Read the Docs build information Build id: 10736 Project: pydetlib-test2 Version: latest Commit: d55e55efe72d2212f02daeb822f20a2375baaab4 Date: 2019-06-12T05:48:41.315805Z State: finished Success: True [rtd-command-info] start-time: 2019-06-12T10:48:54.426000Z, end-time: 2019-06-12T10:49:14.324000Z, duration: 19, exit-code: 0 python3 -mvirtualenv --no-site-packages --no-download /user_builds/pydetlib-test2/envs/latest Using base prefix '/usr' New python executable in /user_builds/pydetlib-test2/envs/latest/bin/python3 Not overwriting existing python script /user_builds/pydetlib-test2/envs/latest/bin/python (you must use /user_builds/pydetlib-test2/envs/latest/bin/python3) Installing setuptools, pip, wheel...done. [rtd-command-info] start-time: 2019-06-12T10:49:14.392000Z, end-time: 2019-06-12T10:50:06.524000Z, duration: 52, exit-code: 0 python /user_builds/pydetlib-test2/envs/latest/bin/pip install --use-wheel -U --cache-dir /user_builds/pydetlib-test2/.cache/pip sphinx==1.3.5 Pygments==2.1.3 setuptools==20.1.1 docutils==0.12 mkdocs==0.15.0 mock==1.0.1 pillow==2.6.1 git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext sphinx-rtd-theme==0.1.9 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.5.4 recommonmark==0.1.1 Collecting sphinx==1.3.5 Using cached https://files.pythonhosted.org/packages/ff/91/45883bc962bda1be7e78039b41cc15e1eb3327ec75679eedd067b5d07bd5/Sphinx-1.3.5-py2.py3-none-any.whl Requirement already up-to-date: Pygments==2.1.3 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages Collecting setuptools==20.1.1 Using cached https://files.pythonhosted.org/packages/e8/82/3b5455f74bf9ac0757d09c625b7741e6fc284d7519cffc3babb6c5173cf5/setuptools-20.1.1-py2.py3-none-any.whl Requirement already up-to-date: docutils==0.12 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: mkdocs==0.15.0 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: mock==1.0.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: pillow==2.6.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages Collecting readthedocs-sphinx-ext from git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext Cloning https://github.com/rtfd/readthedocs-sphinx-ext.git (to 0.6-alpha) to /tmp/pip-build-spnin9rk/readthedocs-sphinx-ext Requirement already up-to-date: sphinx-rtd-theme==0.1.9 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: alabaster!=0.7.5,<0.8,>=0.7 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: commonmark==0.5.4 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: recommonmark==0.1.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: babel!=2.0,>=1.3 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: Jinja2>=2.3 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: six>=1.4 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: snowballstemmer>=1.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: PyYAML>=3.10 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: Markdown>=2.3.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: mkdocs-bootstrap>=0.1.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: tornado>=4.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: click>=4.0 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: mkdocs-bootswatch>=0.1.0 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: livereload>=2.3.2 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: requests in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from readthedocs-sphinx-ext) Requirement already up-to-date: nilsimsa>=0.3.7 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from readthedocs-sphinx-ext) Requirement already up-to-date: pytz>=2015.7 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from babel!=2.0,>=1.3->sphinx==1.3.5) Requirement already up-to-date: MarkupSafe>=0.23 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from Jinja2>=2.3->sphinx==1.3.5) Requirement already up-to-date: backports-abc>=0.4 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from tornado>=4.1->mkdocs==0.15.0) Requirement already up-to-date: chardet<3.1.0,>=3.0.2 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: urllib3<1.25,>=1.21.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: certifi>=2017.4.17 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: idna<2.9,>=2.5 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Installing collected packages: sphinx, setuptools, readthedocs-sphinx-ext Found existing installation: Sphinx 1.8.5 Uninstalling Sphinx-1.8.5: Successfully uninstalled Sphinx-1.8.5 Found existing installation: setuptools 28.8.0 Uninstalling setuptools-28.8.0: Successfully uninstalled setuptools-28.8.0 Found existing installation: readthedocs-sphinx-ext 0.5.4 Uninstalling readthedocs-sphinx-ext-0.5.4: Successfully uninstalled readthedocs-sphinx-ext-0.5.4 Running setup.py install for readthedocs-sphinx-ext: started Running setup.py install for readthedocs-sphinx-ext: finished with status 'done' Successfully installed readthedocs-sphinx-ext-0.5.4 setuptools-20.1.1 sphinx-1.3.5 You are using pip version 9.0.1, however version 19.1.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2019-06-12T10:50:06.591000Z, end-time: 2019-06-12T10:50:33.655000Z, duration: 27, exit-code: 0 python /user_builds/pydetlib-test2/envs/latest/bin/pip install --exists-action=w --cache-dir /user_builds/pydetlib-test2/.cache/pip -rlib/docs/requirements.txt Collecting sphinx>=1.4.5 (from -r lib/docs/requirements.txt (line 1)) Using cached https://files.pythonhosted.org/packages/7d/66/a4af242b4348b729b9d46ce5db23943ce9bca7da9bbe2ece60dc27f26420/Sphinx-1.8.5-py2.py3-none-any.whl Requirement already satisfied: ipython in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 2)) Requirement already satisfied: ipyparallel in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 3)) Requirement already satisfied: jupyter in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 4)) Requirement already satisfied: matplotlib>=2.0.2 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 5)) Requirement already satisfied: numpy>=1.12 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 6)) Requirement already satisfied: tornado>=4.3 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 7)) Requirement already satisfied: pandas==0.18 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 8)) Requirement already satisfied: seaborn>=0.7.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 9)) Requirement already satisfied: brewer2mpl>=1.4 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 10)) Requirement already satisfied: dill>=0.2.5 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 11)) Requirement already satisfied: sphinxcontrib-napoleon>=0.5.2 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 12)) Requirement already satisfied: pypandoc in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 13)) Requirement already satisfied: requests>=2.0.0 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx>=1.4.5->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: babel!=2.0,>=1.3 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx>=1.4.5->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: snowballstemmer>=1.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx>=1.4.5->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: imagesize in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx>=1.4.5->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: Pygments>=2.0 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx>=1.4.5->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: sphinxcontrib-websupport in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx>=1.4.5->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: setuptools in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx>=1.4.5->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: typing; python_version < "3.5" in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx>=1.4.5->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: Jinja2>=2.3 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx>=1.4.5->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: six>=1.5 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx>=1.4.5->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: packaging in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx>=1.4.5->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: alabaster<0.8,>=0.7 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx>=1.4.5->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: docutils>=0.11 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx>=1.4.5->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: traitlets>=4.2 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from ipython->-r lib/docs/requirements.txt (line 2)) Requirement already satisfied: prompt-toolkit<2.0.0,>=1.0.15 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from ipython->-r lib/docs/requirements.txt (line 2)) Requirement already satisfied: pickleshare in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from ipython->-r lib/docs/requirements.txt (line 2)) Requirement already satisfied: backcall in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from ipython->-r lib/docs/requirements.txt (line 2)) Requirement already satisfied: jedi>=0.10 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from ipython->-r lib/docs/requirements.txt (line 2)) Requirement already satisfied: simplegeneric>0.8 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from ipython->-r lib/docs/requirements.txt (line 2)) Requirement already satisfied: decorator in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from ipython->-r lib/docs/requirements.txt (line 2)) Requirement already satisfied: pexpect; 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sys_platform != "win32"->ipython->-r lib/docs/requirements.txt (line 2)) Requirement already satisfied: jupyter-core in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from jupyter-client->ipyparallel->-r lib/docs/requirements.txt (line 3)) Requirement already satisfied: testpath in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from nbconvert->jupyter->-r lib/docs/requirements.txt (line 4)) Requirement already satisfied: defusedxml in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from nbconvert->jupyter->-r lib/docs/requirements.txt (line 4)) Requirement already satisfied: bleach in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from nbconvert->jupyter->-r lib/docs/requirements.txt (line 4)) Requirement already satisfied: pandocfilters>=1.4.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from nbconvert->jupyter->-r lib/docs/requirements.txt (line 4)) Requirement already satisfied: entrypoints>=0.2.2 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from nbconvert->jupyter->-r lib/docs/requirements.txt (line 4)) Requirement already satisfied: nbformat>=4.4 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from nbconvert->jupyter->-r lib/docs/requirements.txt (line 4)) Requirement already satisfied: mistune>=0.8.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from nbconvert->jupyter->-r lib/docs/requirements.txt (line 4)) Requirement already satisfied: prometheus-client in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from notebook->jupyter->-r lib/docs/requirements.txt (line 4)) Requirement already satisfied: Send2Trash in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from notebook->jupyter->-r lib/docs/requirements.txt (line 4)) Requirement already satisfied: terminado>=0.8.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from notebook->jupyter->-r lib/docs/requirements.txt (line 4)) Requirement already satisfied: widgetsnbextension~=3.4.0 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from ipywidgets->jupyter->-r lib/docs/requirements.txt (line 4)) Requirement already satisfied: webencodings in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from bleach->nbconvert->jupyter->-r lib/docs/requirements.txt (line 4)) Requirement already satisfied: jsonschema!=2.5.0,>=2.4 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from nbformat>=4.4->nbconvert->jupyter->-r lib/docs/requirements.txt (line 4)) Requirement already satisfied: pyrsistent>=0.14.0 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.4->nbconvert->jupyter->-r lib/docs/requirements.txt (line 4)) Requirement already satisfied: attrs>=17.4.0 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.4->nbconvert->jupyter->-r lib/docs/requirements.txt (line 4)) Installing collected packages: sphinx Found existing installation: Sphinx 1.3.5 Uninstalling Sphinx-1.3.5: Successfully uninstalled Sphinx-1.3.5 Successfully installed sphinx-1.8.5 You are using pip version 9.0.1, however version 19.1.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2019-06-12T10:50:35.755000Z, end-time: 2019-06-12T10:50:35.781000Z, duration: 0, exit-code: 0 cat conf.py # -*- coding: utf-8 -*- # # src documentation build configuration file, created by # sphinx-quickstart on Tue Sep 30 09:45:40 2014. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. import sys import os from subprocess import Popen sys.path.append(os.path.abspath("../src/")) p = Popen(["./makeAllDocs.sh"]) p.communicate() from unittest.mock import MagicMock class Mock(MagicMock): @classmethod def __getattr__(cls, name): return Mock() MOCK_MODULES = ['pycuda', 'pycuda.driver', 'pycuda.compiler', 'pycuda.autoinit', 'h5py', 'brewer2mpl', 'matplotlib', 'matplotlib.pyplot', 'matplotlib.colors', 'matplotlib.axes', 'matplotlib.collections', 'matplotlib.offsetbox', 'matplotlib.transforms', 'iminuit.util', 'scipy.special', 'scipy', 'scipy.stats', 'matplotlib.patches', 'scipy.ndimage', 'scipy.ndimage.filters', 'iminuit', 'mpl_toolkits', 'mpl_toolkits.mplot3d', 'mpl_toolkits.axes_grid1', 'mpl_toolkits.axes_grid1.inset_locator', 'pandoc', 'pypandoc'] sys.modules.update((mod_name, Mock()) for mod_name in MOCK_MODULES) # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. #sys.path.insert(0, os.path.abspath('.')) # -- General configuration ------------------------------------------------ # If your documentation needs a minimal Sphinx version, state it here. #needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.autodoc', 'sphinx.ext.viewcode', 'sphinxcontrib.napoleon', 'sphinx.ext.mathjax', 'sphinx.ext.intersphinx', 'sphinx.ext.autosectionlabel', 'sphinx.ext.apidoc' ] # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix of source filenames. source_suffix = '.rst' # The encoding of source files. #source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'XFEL Detector Tools' copyright = u'2014, European X-ray Free Electron Laser Facility GmbH' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. version = '' # The full version, including alpha/beta/rc tags. release = '' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. #language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: #today = '' # Else, today_fmt is used as the format for a strftime call. #today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. exclude_patterns = ['_build'] # The reST default role (used for this markup: `text`) to use for all # documents. #default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. #add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). #add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. #show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. #modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. #keep_warnings = False # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. #html_theme_options = {} # Add any paths that contain custom themes here, relative to this directory. #html_theme_path = [] # The name for this set of Sphinx documents. If None, it defaults to # " v documentation". #html_title = None # A shorter title for the navigation bar. Default is the same as html_title. #html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. #html_logo = None # The name of an image file (within the static path) to use as favicon of the # docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. #html_favicon = None # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the documentation. #html_extra_path = [] # If not '', a 'Last updated on:' timestamp is inserted at every page bottom, # using the given strftime format. #html_last_updated_fmt = '%b %d, %Y' # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. #html_use_smartypants = True # Custom sidebar templates, maps document names to template names. #html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. #html_additional_pages = {} # If false, no module index is generated. #html_domain_indices = True # If false, no index is generated. #html_use_index = True # If true, the index is split into individual pages for each letter. #html_split_index = False # If true, links to the reST sources are added to the pages. #html_show_sourcelink = True # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. #html_show_sphinx = True # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. #html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. #html_use_opensearch = '' # This is the file name suffix for HTML files (e.g. ".xhtml"). #html_file_suffix = None # Output file base name for HTML help builder. htmlhelp_basename = 'srcdoc' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). #'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). #'pointsize': '10pt', # Additional stuff for the LaTeX preamble. #'preamble': '', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ ('index', 'src.tex', u'XFEL Detector Tools', u'Steffen Hauf', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. #latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. #latex_use_parts = False # If true, show page references after internal links. #latex_show_pagerefs = False # If true, show URL addresses after external links. #latex_show_urls = False # Documents to append as an appendix to all manuals. #latex_appendices = [] # If false, no module index is generated. #latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ ('index', 'src', u'XFEL Detector Tools', [u'Author'], 1) ] # If true, show URL addresses after external links. #man_show_urls = False # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ ('index', 'src', u'XFEL Detector Tools', u'Author', 'src', 'One line description of project.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. #texinfo_appendices = [] # If false, no module index is generated. #texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. #texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. #texinfo_no_detailmenu = False # -- Options for Epub output ---------------------------------------------- # Bibliographic Dublin Core info. epub_title = u'XFEL Detector Tools' epub_author = u'Steffen Hauf' epub_publisher = u'European X-ray Free Electron Laser GmbH' epub_copyright = u'2014, Steffen Hauf' # The basename for the epub file. It defaults to the project name. #epub_basename = u'src' # The HTML theme for the epub output. Since the default themes are not optimized # for small screen space, using the same theme for HTML and epub output is # usually not wise. This defaults to 'epub', a theme designed to save visual # space. #epub_theme = 'epub' # The language of the text. It defaults to the language option # or en if the language is not set. #epub_language = '' # The scheme of the identifier. Typical schemes are ISBN or URL. #epub_scheme = '' # The unique identifier of the text. This can be a ISBN number # or the project homepage. #epub_identifier = '' # A unique identification for the text. #epub_uid = '' # A tuple containing the cover image and cover page html template filenames. #epub_cover = () # A sequence of (type, uri, title) tuples for the guide element of content.opf. #epub_guide = () # HTML files that should be inserted before the pages created by sphinx. # The format is a list of tuples containing the path and title. #epub_pre_files = [] # HTML files shat should be inserted after the pages created by sphinx. # The format is a list of tuples containing the path and title. #epub_post_files = [] # A list of files that should not be packed into the epub file. epub_exclude_files = ['search.html'] # The depth of the table of contents in toc.ncx. #epub_tocdepth = 3 # Allow duplicate toc entries. #epub_tocdup = True # Choose between 'default' and 'includehidden'. #epub_tocscope = 'default' # Fix unsupported image types using the PIL. #epub_fix_images = False # Scale large images. #epub_max_image_width = 0 # How to display URL addresses: 'footnote', 'no', or 'inline'. #epub_show_urls = 'inline' # If false, no index is generated. #epub_use_index = True autoclass_content = 'both' napoleon_google_docstring = True napoleon_numpy_docstring = True napoleon_include_private_with_doc = True napoleon_include_special_with_doc = False napoleon_use_admonition_for_examples = False napoleon_use_admonition_for_notes = False napoleon_use_admonition_for_references = False napoleon_use_ivar = False napoleon_use_param = True napoleon_use_rtype = True intersphinx_mapping = { #'python': ('http://docs.python.org/2.7', None), 'python': ('https://python.readthedocs.io/en/latest/', None), 'numpy': ('http://docs.scipy.org/doc/numpy/', None), 'scipy': ('http://docs.scipy.org/doc/scipy/reference/', None), 'matplotlib': ('http://matplotlib.sourceforge.net/', None), 'sphinx': ('https://sphinx.readthedocs.io/en/latest/', None)} ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix else: SUFFIX = source_suffix[0] else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') html_static_path.append('/rtd_root/readthedocs/templates/sphinx/_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = False if 'html_theme' in globals(): if html_theme in ['default']: # Allow people to bail with a hack of having an html_style if not 'html_style' in globals(): import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True else: import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.org/websupport' if 'http' not in settings.MEDIA_URL: websupport2_static_url = '/static/' else: websupport2_static_url = '/media//static' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'MEDIA_URL': "/media/", 'PRODUCTION_DOMAIN': "exflrtd.desy.de", 'versions': [ ("latest", "/en/latest/"), ], 'downloads': [ ("pdf", "//exflrtd.desy.de/projects/pydetlib-test2/downloads/pdf/latest/"), ("htmlzip", "//exflrtd.desy.de/projects/pydetlib-test2/downloads/htmlzip/latest/"), ("epub", "//exflrtd.desy.de/projects/pydetlib-test2/downloads/epub/latest/"), ], 'subprojects': [ ], 'slug': 'pydetlib-test2', 'name': u'pydetlib_test2', 'rtd_language': u'en', 'canonical_url': 'http://exflrtd.desy.de/docs/pydetlib-test2/en/latest/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/doc/', 'api_host': 'https://readthedocs.org', 'github_user': 'None', 'github_repo': 'None', 'github_version': 'fix/building_readthedocs_2', 'display_github': False, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'fix/building_readthedocs_2', 'display_bitbucket': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-1', 'commit': 'd55e55ef', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): extensions.append("readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] [rtd-command-info] start-time: 2019-06-12T10:50:37.003000Z, end-time: 2019-06-12T10:51:49.992000Z, duration: 72, exit-code: 0 python /user_builds/pydetlib-test2/envs/latest/bin/sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 mkdir: cannot create directory ‘_notebooks’: File exists [NbConvertApp] Converting notebook ../examples/gainMapStability.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in gainMapStability_files/ [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Writing 48113 bytes to ./gainMapStability.rst [NbConvertApp] Converting notebook ../examples/DataGeneratorExample.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in DataGeneratorExample_files/ [NbConvertApp] Making directory ./DataGeneratorExample_files [NbConvertApp] Writing 1984561 bytes to ./DataGeneratorExample.rst [NbConvertApp] Converting notebook ../examples/calculatorCreation.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Writing 15602 bytes to ./calculatorCreation.rst [NbConvertApp] Converting notebook ../examples/PlotExamples.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in PlotExamples_files/ [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Writing 23677 bytes to ./PlotExamples.rst Creating file ./api/XFELDetAna.rst. Creating file ./api/XFELDetAna.algorithms.rst. Creating file ./api/XFELDetAna.algorithms.cython.rst. Creating file ./api/XFELDetAna.algorithms.gpu.rst. Creating file ./api/XFELDetAna.algorithms.gpu.kernels.rst. Creating file ./api/XFELDetAna.algorithms.tests.rst. Creating file ./api/XFELDetAna.core.rst. Creating file ./api/XFELDetAna.detectors.rst. Creating file ./api/XFELDetAna.detectors.agipd.rst. Creating file ./api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.kernels.rst. Creating file ./api/XFELDetAna.detectors.agipd.tests.rst. Creating file ./api/XFELDetAna.detectors.dssc.rst. Creating file ./api/XFELDetAna.detectors.edf_data.rst. Creating file ./api/XFELDetAna.detectors.epix.rst. Creating file ./api/XFELDetAna.detectors.fastccd.rst. Creating file ./api/XFELDetAna.detectors.generator.rst. Creating file ./api/XFELDetAna.detectors.jungfrau.rst. Creating file ./api/XFELDetAna.detectors.lpd.rst. Creating file ./api/XFELDetAna.detectors.pnccd.rst. Creating file ./api/XFELDetAna.plotting.rst. Creating file ./api/XFELDetAna.util.rst. Creating file ./api/modules.rst. loading translations [en]... done WARNING: extension 'sphinx.ext.apidoc' has no setup() function; is it really a Sphinx extension module? making output directory... loading intersphinx inventory from https://sphinx.readthedocs.io/en/latest/objects.inv... loading intersphinx inventory from http://matplotlib.sourceforge.net/objects.inv... intersphinx inventory has moved: http://matplotlib.sourceforge.net/objects.inv -> https://matplotlib.org/objects.inv loading intersphinx inventory from http://docs.scipy.org/doc/scipy/reference/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/scipy/reference/objects.inv -> https://docs.scipy.org/doc/scipy/reference/objects.inv loading intersphinx inventory from http://docs.scipy.org/doc/numpy/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/numpy/objects.inv -> https://docs.scipy.org/doc/numpy/objects.inv loading intersphinx inventory from https://python.readthedocs.io/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 30 source files that are out of date updating environment: 30 added, 0 changed, 0 removed reading sources... [ 3%] _notebooks/DataGeneratorExample reading sources... [ 6%] _notebooks/PlotExamples reading sources... [ 10%] _notebooks/calculatorCreation reading sources... [ 13%] _notebooks/gainMapStability reading sources... [ 16%] _notebooks/index reading sources... [ 20%] api/XFELDetAna reading sources... [ 23%] api/XFELDetAna.algorithms reading sources... [ 26%] api/XFELDetAna.algorithms.gpu reading sources... [ 30%] api/XFELDetAna.algorithms.gpu.kernels reading sources... [ 33%] api/XFELDetAna.algorithms.tests reading sources... [ 36%] api/XFELDetAna.core reading sources... [ 40%] api/XFELDetAna.detectors reading sources... [ 43%] api/XFELDetAna.detectors.agipd reading sources... [ 46%] api/XFELDetAna.detectors.agipd.dyrange_algorithms reading sources... [ 50%] api/XFELDetAna.detectors.agipd.gpu reading sources... [ 53%] api/XFELDetAna.detectors.agipd.gpu.kernels reading sources... [ 56%] api/XFELDetAna.detectors.agipd.tests reading sources... [ 60%] api/XFELDetAna.detectors.dssc reading sources... [ 63%] api/XFELDetAna.detectors.edf_data reading sources... [ 66%] api/XFELDetAna.detectors.epix reading sources... [ 70%] api/XFELDetAna.detectors.fastccd reading sources... [ 73%] api/XFELDetAna.detectors.generator reading sources... [ 76%] api/XFELDetAna.detectors.jungfrau reading sources... [ 80%] api/XFELDetAna.detectors.lpd reading sources... [ 83%] api/XFELDetAna.detectors.pnccd reading sources... [ 86%] api/XFELDetAna.plotting reading sources... [ 90%] api/XFELDetAna.util reading sources... [ 93%] api/modules reading sources... [ 96%] index reading sources... [100%] installation /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. RemovedInSphinx20Warning) /user_builds/pydetlib-test2/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:18: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:24: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:44: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:48: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:54: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:7: WARNING: toctree contains reference to nonexisting document 'api/XFELDetAna.algorithms.cython' /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator:38: WARNING: Unknown interpreted text role "method". /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator.get:26: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:88: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/algorithms/gpu/correct_common_mode.py:docstring of XFELDetAna.algorithms.gpu.correct_common_mode._gpuCommonMode:11: WARNING: Unexpected indentation. /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:12: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:56: WARNING: duplicate label module contents, other instance in 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'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_rel_gain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_split_events' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_common_mode' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_relgain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_statistics' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_unitary' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'testing_base' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:69: WARNING: duplicate label module contents, other 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/user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:15: WARNING: Unexpected indentation. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of 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/user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:15: WARNING: Unexpected indentation. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of 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/user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of 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Copying readthedocs-dynamic-include.js_t... done Copying readthedocs-data.js_t... done Copying searchtools.js_t... done /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/readthedocs_ext/readthedocs.py:122: RemovedInSphinx20Warning: app.info() is now deprecated. Use sphinx.util.logging instead. app.info(bold('Copying %s... ' % file), nonl=True) /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/readthedocs_ext/readthedocs.py:136: RemovedInSphinx20Warning: app.info() is now deprecated. Use sphinx.util.logging instead. app.info('done') [rtd-command-info] start-time: 2019-06-12T10:52:06.630000Z, end-time: 2019-06-12T10:53:03.995000Z, duration: 57, exit-code: 0 python /user_builds/pydetlib-test2/envs/latest/bin/sphinx-build -T -b json -d _build/doctrees-json -D language=en . _build/json Running Sphinx v1.8.5 mkdir: cannot create directory ‘_notebooks’: File exists [NbConvertApp] Converting notebook ../examples/gainMapStability.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in gainMapStability_files/ [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Writing 48113 bytes to ./gainMapStability.rst [NbConvertApp] Converting notebook ../examples/DataGeneratorExample.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in DataGeneratorExample_files/ [NbConvertApp] Making directory ./DataGeneratorExample_files [NbConvertApp] Writing 1984561 bytes to ./DataGeneratorExample.rst [NbConvertApp] Converting notebook ../examples/calculatorCreation.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Writing 15602 bytes to ./calculatorCreation.rst [NbConvertApp] Converting notebook ../examples/PlotExamples.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in PlotExamples_files/ [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Writing 23677 bytes to ./PlotExamples.rst Creating file ./api/XFELDetAna.rst. Creating file ./api/XFELDetAna.algorithms.rst. Creating file ./api/XFELDetAna.algorithms.cython.rst. Creating file ./api/XFELDetAna.algorithms.gpu.rst. Creating file ./api/XFELDetAna.algorithms.gpu.kernels.rst. Creating file ./api/XFELDetAna.algorithms.tests.rst. Creating file ./api/XFELDetAna.core.rst. Creating file ./api/XFELDetAna.detectors.rst. Creating file ./api/XFELDetAna.detectors.agipd.rst. Creating file ./api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.kernels.rst. Creating file ./api/XFELDetAna.detectors.agipd.tests.rst. Creating file ./api/XFELDetAna.detectors.dssc.rst. Creating file ./api/XFELDetAna.detectors.edf_data.rst. Creating file ./api/XFELDetAna.detectors.epix.rst. Creating file ./api/XFELDetAna.detectors.fastccd.rst. Creating file ./api/XFELDetAna.detectors.generator.rst. Creating file ./api/XFELDetAna.detectors.jungfrau.rst. Creating file ./api/XFELDetAna.detectors.lpd.rst. Creating file ./api/XFELDetAna.detectors.pnccd.rst. Creating file ./api/XFELDetAna.plotting.rst. Creating file ./api/XFELDetAna.util.rst. Creating file ./api/modules.rst. loading translations [en]... done WARNING: extension 'sphinx.ext.apidoc' has no setup() function; is it really a Sphinx extension module? making output directory... loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [json]: targets for 30 source files that are out of date updating environment: [] 0 added, 28 changed, 0 removed reading sources... [ 3%] _notebooks/DataGeneratorExample reading sources... [ 7%] _notebooks/PlotExamples reading sources... [ 10%] _notebooks/calculatorCreation reading sources... [ 14%] _notebooks/gainMapStability reading sources... [ 17%] _notebooks/index reading sources... [ 21%] api/XFELDetAna reading sources... [ 25%] api/XFELDetAna.algorithms reading sources... 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'test_characterize_split_events' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_common_mode' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_relgain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_statistics' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_unitary' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'testing_base' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:69: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/core/reader.py:docstring of XFELDetAna.core.reader.ChunkReader.readChunks:8: WARNING: Definition list ends without a blank line; unexpected 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/user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of 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/user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:29: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of 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WARNING: html_static_path entry '/user_builds/pydetlib-test2/checkouts/latest/lib/docs/_static' does not exist WARNING: html_static_path entry '/rtd_root/readthedocs/templates/sphinx/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 141 warnings. You can now process the JSON files in _build/json. [rtd-command-info] start-time: 2019-06-12T10:53:11.944000Z, end-time: 2019-06-12T10:54:01.988000Z, duration: 50, exit-code: 0 python /user_builds/pydetlib-test2/envs/latest/bin/sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.8.5 mkdir: cannot create directory ‘_notebooks’: File exists [NbConvertApp] Converting notebook ../examples/gainMapStability.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in gainMapStability_files/ [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Writing 48113 bytes to ./gainMapStability.rst [NbConvertApp] Converting notebook ../examples/DataGeneratorExample.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in DataGeneratorExample_files/ [NbConvertApp] Making directory ./DataGeneratorExample_files [NbConvertApp] Writing 1984561 bytes to ./DataGeneratorExample.rst [NbConvertApp] Converting notebook ../examples/calculatorCreation.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Writing 15602 bytes to ./calculatorCreation.rst [NbConvertApp] Converting notebook ../examples/PlotExamples.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in PlotExamples_files/ [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Writing 23677 bytes to ./PlotExamples.rst Creating file ./api/XFELDetAna.rst. Creating file ./api/XFELDetAna.algorithms.rst. Creating file ./api/XFELDetAna.algorithms.cython.rst. Creating file ./api/XFELDetAna.algorithms.gpu.rst. Creating file ./api/XFELDetAna.algorithms.gpu.kernels.rst. Creating file ./api/XFELDetAna.algorithms.tests.rst. Creating file ./api/XFELDetAna.core.rst. Creating file ./api/XFELDetAna.detectors.rst. Creating file ./api/XFELDetAna.detectors.agipd.rst. Creating file ./api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.kernels.rst. Creating file ./api/XFELDetAna.detectors.agipd.tests.rst. Creating file ./api/XFELDetAna.detectors.dssc.rst. Creating file ./api/XFELDetAna.detectors.edf_data.rst. Creating file ./api/XFELDetAna.detectors.epix.rst. Creating file ./api/XFELDetAna.detectors.fastccd.rst. Creating file ./api/XFELDetAna.detectors.generator.rst. Creating file ./api/XFELDetAna.detectors.jungfrau.rst. Creating file ./api/XFELDetAna.detectors.lpd.rst. Creating file ./api/XFELDetAna.detectors.pnccd.rst. Creating file ./api/XFELDetAna.plotting.rst. Creating file ./api/XFELDetAna.util.rst. Creating file ./api/modules.rst. loading translations [en]... done WARNING: extension 'sphinx.ext.apidoc' has no setup() function; is it really a Sphinx extension module? making output directory... loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: [] 0 added, 28 changed, 0 removed reading sources... [ 3%] _notebooks/DataGeneratorExample reading sources... [ 7%] _notebooks/PlotExamples reading sources... [ 10%] _notebooks/calculatorCreation reading sources... [ 14%] _notebooks/gainMapStability reading sources... [ 17%] _notebooks/index reading sources... [ 21%] api/XFELDetAna reading sources... [ 25%] api/XFELDetAna.algorithms reading sources... [ 28%] api/XFELDetAna.algorithms.gpu reading sources... [ 32%] api/XFELDetAna.algorithms.gpu.kernels reading sources... [ 35%] api/XFELDetAna.algorithms.tests reading sources... [ 39%] api/XFELDetAna.core reading sources... [ 42%] api/XFELDetAna.detectors reading sources... [ 46%] api/XFELDetAna.detectors.agipd reading sources... [ 50%] api/XFELDetAna.detectors.agipd.dyrange_algorithms reading sources... [ 53%] api/XFELDetAna.detectors.agipd.gpu reading sources... [ 57%] api/XFELDetAna.detectors.agipd.gpu.kernels reading sources... [ 60%] api/XFELDetAna.detectors.agipd.tests reading sources... [ 64%] api/XFELDetAna.detectors.dssc reading sources... [ 67%] api/XFELDetAna.detectors.edf_data reading sources... [ 71%] api/XFELDetAna.detectors.epix reading sources... [ 75%] api/XFELDetAna.detectors.fastccd reading sources... [ 78%] api/XFELDetAna.detectors.generator reading sources... [ 82%] api/XFELDetAna.detectors.jungfrau reading sources... [ 85%] api/XFELDetAna.detectors.lpd reading sources... [ 89%] api/XFELDetAna.detectors.pnccd reading sources... [ 92%] api/XFELDetAna.plotting reading sources... [ 96%] api/XFELDetAna.util reading sources... [100%] api/modules /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. RemovedInSphinx20Warning) /user_builds/pydetlib-test2/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:18: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:24: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:44: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:48: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:54: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst:16: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.util.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst:45: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.util.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:7: WARNING: toctree contains reference to nonexisting document 'api/XFELDetAna.algorithms.cython' /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator:38: WARNING: Unknown interpreted text role "method". /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator.get:26: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:88: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/algorithms/gpu/correct_common_mode.py:docstring of XFELDetAna.algorithms.gpu.correct_common_mode._gpuCommonMode:11: WARNING: Unexpected indentation. /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:12: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:56: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst:49: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst WARNING: autodoc: failed to import module 'test_characterize_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_noise' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_rel_gain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_split_events' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_common_mode' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_relgain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_statistics' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_unitary' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'testing_base' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:69: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/core/reader.py:docstring of XFELDetAna.core.reader.ChunkReader.readChunks:8: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:34: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst:20: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.core.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.core.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:38: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:15: WARNING: Unexpected indentation. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:29: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of 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/user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst:5: WARNING: duplicate label submodules, other instance in 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/user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:31: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.edf_data.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.dssc.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.edf_data.rst:24: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.dssc.rst 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/user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/characterize_jfgain.py:docstring of XFELDetAna.detectors.jungfrau.characterize_jfgain.JFGainMapCalculator.getG0Calibration:8: WARNING: Unexpected indentation. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/characterize_jfgain.py:docstring of XFELDetAna.detectors.jungfrau.characterize_jfgain.JFGainMapCalculator.getHigerGainCalibration:8: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/characterize_jfgain.py:docstring of XFELDetAna.detectors.jungfrau.characterize_jfgain.JFGainMapCalculator.getHigerGainCalibration:10: WARNING: Unexpected indentation. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/characterize_jfgain.py:docstring of XFELDetAna.detectors.jungfrau.characterize_jfgain.JFGainMapCalculator.getHigerGainCalibration:10: 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0x7f0837a592f0> (in module XFELDetAna.util.knumpy) -- ignoring __all__ /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:34: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation _notebooks/index _notebooks/gainMapStability _notebooks/DataGeneratorExample _notebooks/calculatorCreation _notebooks/PlotExamples api/modules api/XFELDetAna api/XFELDetAna.algorithms api/XFELDetAna.algorithms.gpu api/XFELDetAna.algorithms.gpu.kernels api/XFELDetAna.algorithms.tests api/XFELDetAna.core api/XFELDetAna.detectors api/XFELDetAna.detectors.agipd api/XFELDetAna.detectors.agipd.dyrange_algorithms api/XFELDetAna.detectors.agipd.gpu api/XFELDetAna.detectors.agipd.gpu.kernels api/XFELDetAna.detectors.agipd.tests api/XFELDetAna.detectors.dssc api/XFELDetAna.detectors.edf_data api/XFELDetAna.detectors.epix api/XFELDetAna.detectors.fastccd api/XFELDetAna.detectors.generator api/XFELDetAna.detectors.jungfrau api/XFELDetAna.detectors.lpd api/XFELDetAna.detectors.pnccd api/XFELDetAna.plotting api/XFELDetAna.util /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_relgain.py:docstring of XFELDetAna.algorithms.characterize_relgain.GainMapCalculator:9: WARNING: undefined label: _gainmapstability (if the link has no caption the label must precede a section header) writing... done writing additional files... copying images... 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Please use app.add_stylesheet() instead. app.builder.css_files.insert(0, theme_css) WARNING: html_static_path entry '/user_builds/pydetlib-test2/checkouts/latest/lib/docs/_static' does not exist WARNING: html_static_path entry '/rtd_root/readthedocs/templates/sphinx/_static' does not exist done copying extra files... done dumping object inventory... done build succeeded, 141 warnings. The HTML page is in _build/localmedia. [rtd-command-info] start-time: 2019-06-12T10:54:04.082000Z, end-time: 2019-06-12T10:54:52.009000Z, duration: 47, exit-code: 0 python /user_builds/pydetlib-test2/envs/latest/bin/sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.8.5 mkdir: cannot create directory ‘_notebooks’: File exists [NbConvertApp] Converting notebook ../examples/gainMapStability.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in gainMapStability_files/ [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Writing 48113 bytes to ./gainMapStability.rst [NbConvertApp] Converting notebook ../examples/DataGeneratorExample.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in DataGeneratorExample_files/ [NbConvertApp] Making directory ./DataGeneratorExample_files [NbConvertApp] Writing 1984561 bytes to ./DataGeneratorExample.rst [NbConvertApp] Converting notebook ../examples/calculatorCreation.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Writing 15602 bytes to ./calculatorCreation.rst [NbConvertApp] Converting notebook ../examples/PlotExamples.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in PlotExamples_files/ [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Writing 23677 bytes to ./PlotExamples.rst Creating file ./api/XFELDetAna.rst. Creating file ./api/XFELDetAna.algorithms.rst. Creating file ./api/XFELDetAna.algorithms.cython.rst. Creating file ./api/XFELDetAna.algorithms.gpu.rst. Creating file ./api/XFELDetAna.algorithms.gpu.kernels.rst. Creating file ./api/XFELDetAna.algorithms.tests.rst. Creating file ./api/XFELDetAna.core.rst. Creating file ./api/XFELDetAna.detectors.rst. Creating file ./api/XFELDetAna.detectors.agipd.rst. Creating file ./api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.kernels.rst. Creating file ./api/XFELDetAna.detectors.agipd.tests.rst. Creating file ./api/XFELDetAna.detectors.dssc.rst. Creating file ./api/XFELDetAna.detectors.edf_data.rst. Creating file ./api/XFELDetAna.detectors.epix.rst. Creating file ./api/XFELDetAna.detectors.fastccd.rst. Creating file ./api/XFELDetAna.detectors.generator.rst. Creating file ./api/XFELDetAna.detectors.jungfrau.rst. Creating file ./api/XFELDetAna.detectors.lpd.rst. Creating file ./api/XFELDetAna.detectors.pnccd.rst. Creating file ./api/XFELDetAna.plotting.rst. Creating file ./api/XFELDetAna.util.rst. Creating file ./api/modules.rst. loading translations [en]... done WARNING: extension 'sphinx.ext.apidoc' has no setup() function; is it really a Sphinx extension module? making output directory... loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: [] 0 added, 28 changed, 0 removed reading sources... [ 3%] _notebooks/DataGeneratorExample reading sources... [ 7%] _notebooks/PlotExamples reading sources... [ 10%] _notebooks/calculatorCreation reading sources... [ 14%] _notebooks/gainMapStability reading sources... [ 17%] _notebooks/index reading sources... [ 21%] api/XFELDetAna reading sources... [ 25%] api/XFELDetAna.algorithms reading sources... [ 28%] api/XFELDetAna.algorithms.gpu reading sources... [ 32%] api/XFELDetAna.algorithms.gpu.kernels reading sources... [ 35%] api/XFELDetAna.algorithms.tests reading sources... [ 39%] api/XFELDetAna.core reading sources... [ 42%] api/XFELDetAna.detectors reading sources... [ 46%] api/XFELDetAna.detectors.agipd reading sources... [ 50%] api/XFELDetAna.detectors.agipd.dyrange_algorithms reading sources... [ 53%] api/XFELDetAna.detectors.agipd.gpu reading sources... [ 57%] api/XFELDetAna.detectors.agipd.gpu.kernels reading sources... [ 60%] api/XFELDetAna.detectors.agipd.tests reading sources... [ 64%] api/XFELDetAna.detectors.dssc reading sources... [ 67%] api/XFELDetAna.detectors.edf_data reading sources... [ 71%] api/XFELDetAna.detectors.epix reading sources... [ 75%] api/XFELDetAna.detectors.fastccd reading sources... [ 78%] api/XFELDetAna.detectors.generator reading sources... [ 82%] api/XFELDetAna.detectors.jungfrau reading sources... [ 85%] api/XFELDetAna.detectors.lpd reading sources... [ 89%] api/XFELDetAna.detectors.pnccd reading sources... [ 92%] api/XFELDetAna.plotting reading sources... [ 96%] api/XFELDetAna.util reading sources... [100%] api/modules /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. RemovedInSphinx20Warning) /user_builds/pydetlib-test2/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:18: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:24: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:44: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:48: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:54: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst:16: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.util.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst:45: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.util.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:7: WARNING: toctree contains reference to nonexisting document 'api/XFELDetAna.algorithms.cython' /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator:38: WARNING: Unknown interpreted text role "method". /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator.get:26: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:88: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/algorithms/gpu/correct_common_mode.py:docstring of XFELDetAna.algorithms.gpu.correct_common_mode._gpuCommonMode:11: WARNING: Unexpected indentation. /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:12: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:56: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst:49: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst WARNING: autodoc: failed to import module 'test_characterize_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_noise' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_rel_gain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_split_events' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_common_mode' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_relgain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_statistics' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_unitary' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'testing_base' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:69: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/core/reader.py:docstring of XFELDetAna.core.reader.ChunkReader.readChunks:8: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:34: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst:20: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.core.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.core.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:38: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:15: WARNING: Unexpected indentation. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:29: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:8: WARNING: Block quote ends without a blank 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/user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst:5: WARNING: duplicate label submodules, other instance in 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WARNING: Unexpected indentation. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.GetData:10: WARNING: Unexpected indentation. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.GetData:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:3: WARNING: Unexpected indentation. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:5: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:31: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.edf_data.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.dssc.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.edf_data.rst:24: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.dssc.rst 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/user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.generator.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.fastccd.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.generator.rst:14: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.fastccd.rst /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/characterize_jfgain.py:docstring of XFELDetAna.detectors.jungfrau.characterize_jfgain.JFGainMapCalculator.fill:19: WARNING: Unexpected indentation. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/characterize_jfgain.py:docstring of XFELDetAna.detectors.jungfrau.characterize_jfgain.JFGainMapCalculator.fill:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/characterize_jfgain.py:docstring of XFELDetAna.detectors.jungfrau.characterize_jfgain.JFGainMapCalculator.getG0Calibration:8: WARNING: Unexpected indentation. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/characterize_jfgain.py:docstring of XFELDetAna.detectors.jungfrau.characterize_jfgain.JFGainMapCalculator.getHigerGainCalibration:8: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/characterize_jfgain.py:docstring of XFELDetAna.detectors.jungfrau.characterize_jfgain.JFGainMapCalculator.getHigerGainCalibration:10: WARNING: Unexpected indentation. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/characterize_jfgain.py:docstring of XFELDetAna.detectors.jungfrau.characterize_jfgain.JFGainMapCalculator.getHigerGainCalibration:10: 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XFELDetAna.detectors.jungfrau.characterize_jfgain._gainMapFitter:4: WARNING: Unexpected indentation. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/characterize_jfgain.py:docstring of XFELDetAna.detectors.jungfrau.characterize_jfgain._gainMapFitter:20: WARNING: Inline emphasis start-string without end-string. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/characterize_jfgain.py:docstring of XFELDetAna.detectors.jungfrau.characterize_jfgain._gainSpectraFitter:6: WARNING: Unexpected indentation. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/jf_chunk_reader.py:docstring of XFELDetAna.detectors.jungfrau.jf_chunk_reader.JFChunkReader.readChunks:10: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst:5: WARNING: duplicate label submodules, other instance in 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[120] [121] Underfull \hbox (badness 10000) in paragraph at lines 7172--7172 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7172--7172 \T1/ptm/m/it/10 thresh- Underfull \hbox (badness 10000) in paragraph at lines 7172--7172 \T1/ptm/m/it/10 oldMap\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7172--7172 \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , Overfull \hbox (14.44444pt too wide) in paragraph at lines 7172--7172 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , Overfull \hbox (1.76465pt too wide) in paragraph at lines 7172--7172 \T1/ptm/m/it/10 **kwargs\T1/pcr/m/n/10 ) LaTeX Warning: Hyper reference `api/XFELDetAna.algorithms:XFELDetAna.algorithms .correction.CorrectionBase' on page 122 undefined on input line 7173. [122] [123] Underfull \hbox (badness 10000) in paragraph at lines 7323--7325 []\T1/ptm/m/n/10 Usually the Underfull \hbox (badness 10000) in paragraph at lines 7363--7371 []\T1/ptm/m/n/10 __init__(self,FileName) Get-N-u-mIm-ages(self) def Get-Data(se lf,Index, Underfull \hbox (badness 10000) in paragraph at lines 7363--7371 \T1/ptm/m/n/10 DataType=^^Q^^P,Pos=None,Size=None): Get-Pixel(self,Index,Positi on) Get-H-eader(self,Index) Get-Static- Overfull \hbox (4.81061pt too wide) in paragraph at lines 7363--7371 \T1/ptm/m/n/10 Header(self,Index) WriteIm-age (self,Header,Data,Append=1,DataTy pe=^^Q^^P,WriteAsUnsigened=0,ByteOrder=^^Q^^P) [124] LaTeX Warning: Hyper reference `api/XFELDetAna.detectors.edf_data:XFELDetAna.de tectors.edf_data.EdfFile.EdfFile' on page 125 undefined on input line 7450. [125] LaTeX Warning: Hyper reference `api/XFELDetAna.detectors.edf_data:XFELDetAna.de tectors.edf_data.EdfFile.EdfFile' on page 126 undefined on input line 7619. [126] [127] [128] [129] Underfull \hbox (badness 10000) in paragraph at lines 8018--8018 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 path='/stream'\T1/pt m/m/n/10 , Overfull \hbox (37.07484pt too wide) in paragraph at lines 8105--8105 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , Overfull \hbox (81.04456pt too wide) in paragraph at lines 8105--8105 \T1/ptm/m/it/10 noiseMap=None\T1/ptm/m/n/10 , Overfull \hbox (51.05455pt too wide) in paragraph at lines 8105--8105 \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , Overfull \hbox (68.44444pt too wide) in paragraph at lines 8105--8105 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , Overfull \hbox (55.76465pt too wide) in paragraph at lines 8105--8105 \T1/ptm/m/it/10 **kwargs\T1/pcr/m/n/10 ) LaTeX Warning: Hyper reference `api/XFELDetAna.core:XFELDetAna.core.mapcalculat or.MapCalculator' on page 130 undefined on input line 8106. 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[135] [136] [137] Underfull \hbox (badness 10000) in paragraph at lines 8926--8928 []\T1/ptm/m/n/10 Usually the [138] [139] [140] Underfull \hbox (badness 10000) in paragraph at lines 9388--9388 []\T1/ptm/m/it/10 ax\T1/ptm/m/n/10 , \T1/ptm/m/it/10 d\T1/ptm/m/n/10 , \T1/ptm/ m/it/10 cmap=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 norm=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9388--9388 \T1/ptm/m/it/10 vmin=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 vmax=None\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 al-pha=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9388--9388 \T1/ptm/m/it/10 linewidths=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 edge-col-ors='f ace'\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 9388--9388 \T1/ptm/m/it/10 duce_C_function=\T1/ptm/m/n/10 , [141] Underfull \hbox (badness 6792) in paragraph at lines 9508--9508 []\T1/ptm/m/it/10 data\T1/ptm/m/n/10 , \T1/ptm/m/it/10 axes\T1/ptm/m/n/10 , \T1 /ptm/m/it/10 ax-is-Names\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ti-tle=None\T1/ptm/m/n /10 , [142] Underfull \hbox (badness 10000) in paragraph at lines 9534--9535 []\T1/pcr/b/n/10 will be passed to the matplotlib fill_between() function. [143] [144] [145] [146] LaTeX Warning: Hyper reference `api/XFELDetAna.util:XFELDetAna.util.knumpy.axis Meaning' on page 147 undefined on input line 10540. [147] [148] [149] LaTeX Warning: Hyper reference `api/XFELDetAna.util:XFELDetAna.util.knumpy.axis Meaning' on page 150 undefined on input line 11112. LaTeX Warning: Hyper reference `api/XFELDetAna.util:XFELDetAna.util.knumpy.axis Meaning' on page 150 undefined on input line 11120. LaTeX Warning: Hyper reference `api/XFELDetAna.util:XFELDetAna.util.knumpy.axis Meaning' on page 150 undefined on input line 11128. [150] [151] [152] [153] [154] LaTeX Warning: Hyper reference `api/XFELDetAna.util:XFELDetAna.util.knumpy.axis Meaning' on page 155 undefined on input line 12198. [155] [156] [157] LaTeX Warning: Hyper reference `api/XFELDetAna.util:XFELDetAna.util.knumpy.axis Meaning' on page 158 undefined on input line 12656. 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[rtd-command-info] start-time: 2019-06-12T10:54:59.522000Z, end-time: 2019-06-12T10:54:59.601000Z, duration: 0, exit-code: 0 makeindex -s python.ist src.idx This is makeindex, version 2.15 [TeX Live 2015/dev] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file src.idx.....done (1013 entries accepted, 0 rejected). Sorting entries...........done (11204 comparisons). Generating output file src.ind.....done (1477 lines written, 0 warnings). Output written in src.ind. Transcript written in src.ilg. [rtd-command-info] start-time: 2019-06-12T10:54:59.662000Z, end-time: 2019-06-12T10:55:07.302000Z, duration: 7, exit-code: 0 pdflatex -interaction=nonstopmode /user_builds/pydetlib-test2/checkouts/latest/doc/_build/latex/src.tex This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (/user_builds/pydetlib-test2/checkouts/latest/doc/_build/latex/src.tex LaTeX2e <2014/05/01> Babel <3.9l> and hyphenation patterns for 2 languages loaded. 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noiseMap=None\T1/pcr/m/n/10 ) [86] Overfull \hbox (19.07484pt too wide) in paragraph at lines 3288--3288 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , Overfull \hbox (15.45485pt too wide) in paragraph at lines 3288--3288 \T1/ptm/m/it/10 mem- Overfull \hbox (16.30455pt too wide) in paragraph at lines 3288--3288 \T1/ptm/m/it/10 Cells\T1/ptm/m/n/10 , Overfull \hbox (17.4148pt too wide) in paragraph at lines 3288--3288 \T1/ptm/m/it/10 gains\T1/ptm/m/n/10 , Overfull \hbox (40.27449pt too wide) in paragraph at lines 3288--3288 \T1/ptm/m/it/10 tile_dim=4\T1/ptm/m/n/10 , Overfull \hbox (28.60474pt too wide) in paragraph at lines 3288--3288 \T1/ptm/m/it/10 zDim=1\T1/ptm/m/n/10 , Overfull \hbox (14.7948pt too wide) in paragraph at lines 3288--3288 \T1/ptm/m/it/10 keep- Overfull \hbox (56.90466pt too wide) in paragraph at lines 3288--3288 \T1/ptm/m/it/10 OnGpu=False\T1/pcr/m/n/10 ) [87] Underfull \hbox (badness 10000) in paragraph at lines 3332--3332 \T1/ptm/m/it/10 crange=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3332--3332 \T1/ptm/m/it/10 noisemap=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3332--3332 \T1/ptm/m/it/10 shape=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3371--3371 []\T1/ptm/m/it/10 a\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-rec-tion\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3371--3371 \T1/ptm/m/it/10 block-Size\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3371--3371 \T1/ptm/m/it/10 m\T1/ptm/m/n/10 , \T1/ptm/m/it/10 crange\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3371--3371 \T1/ptm/m/it/10 shape=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3371--3371 \T1/ptm/m/it/10 keep- [88] Underfull \hbox (badness 10000) in paragraph at lines 3407--3407 []\T1/ptm/m/it/10 a\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-rec-tion\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3407--3407 \T1/ptm/m/it/10 block-Size\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3407--3407 \T1/ptm/m/it/10 noisemap\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3407--3407 \T1/ptm/m/it/10 crange\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mem- Underfull \hbox (badness 10000) in paragraph at lines 3407--3407 \T1/ptm/m/it/10 Cells\T1/ptm/m/n/10 , \T1/ptm/m/it/10 stack\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3407--3407 \T1/ptm/m/it/10 sig\T1/ptm/m/n/10 , \T1/ptm/m/it/10 bs=4\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3407--3407 \T1/ptm/m/it/10 cellTable=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3407--3407 \T1/ptm/m/it/10 gain- Underfull \hbox (badness 10000) in paragraph at lines 3407--3407 \T1/ptm/m/it/10 Code=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3407--3407 \T1/ptm/m/it/10 shape=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3407--3407 \T1/ptm/m/it/10 keep- Underfull \hbox (badness 10000) in paragraph at lines 3407--3407 \T1/ptm/m/it/10 OnGpu=False\T1/ptm/m/n/10 , [89] Underfull \hbox (badness 10000) in paragraph at lines 3491--3491 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , \T1/ptm/m/it/10 noisemap\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3491--3491 \T1/ptm/m/it/10 axis\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3491--3491 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , [90] Underfull \hbox (badness 10000) in paragraph at lines 3651--3651 []\T1/ptm/m/it/10 *args\T1/ptm/m/n/10 , [91] Underfull \hbox (badness 10000) in paragraph at lines 3707--3707 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3707--3707 \T1/ptm/m/it/10 peakEs- Underfull \hbox (badness 10000) in paragraph at lines 3707--3707 \T1/ptm/m/it/10 ti-mates\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3707--3707 \T1/ptm/m/it/10 al-lowed- Underfull \hbox (badness 10000) in paragraph at lines 3707--3707 \T1/ptm/m/it/10 Devs\T1/ptm/m/n/10 , Overfull \hbox (27.04456pt too wide) in paragraph at lines 3707--3707 \T1/ptm/m/it/10 noiseMap=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3707--3707 \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , Overfull \hbox (28.14453pt too wide) in paragraph at lines 3707--3707 \T1/ptm/m/it/10 method='means'\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3707--3707 \T1/ptm/m/it/10 de-vi-a-tion- Overfull \hbox (21.78412pt too wide) in paragraph at lines 3707--3707 \T1/ptm/m/it/10 Type='relative'\T1/ptm/m/n/10 , Overfull \hbox (14.44444pt too wide) in paragraph at lines 3707--3707 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , Overfull \hbox (1.76465pt too wide) in paragraph at lines 3707--3707 \T1/ptm/m/it/10 **kwargs\T1/pcr/m/n/10 ) [92] Underfull \hbox (badness 10000) in paragraph at lines 3835--3838 []\T1/pcr/b/n/10 restrictPeaks \T1/ptm/m/n/10 (\T1/pcr/m/sl/10 List of peak ind exes to restrict evaluation [93] Underfull \hbox (badness 10000) in paragraph at lines 3971--3971 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3971--3971 \T1/ptm/m/it/10 block- Underfull \hbox (badness 10000) in paragraph at lines 3971--3971 \T1/ptm/m/it/10 Size\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3971--3971 \T1/ptm/m/it/10 ori-en- Underfull \hbox (badness 10000) in paragraph at lines 3971--3971 \T1/ptm/m/it/10 ta-tion\T1/ptm/m/n/10 , Overfull \hbox (4.78467pt too wide) in paragraph at lines 3971--3971 \T1/ptm/m/it/10 cores=4\T1/ptm/m/n/10 , Overfull \hbox (9.05455pt too wide) in paragraph at lines 3971--3971 \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , Overfull \hbox (26.44444pt too wide) in paragraph at lines 3971--3971 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , Overfull \hbox (13.76465pt too wide) in paragraph at lines 3971--3971 \T1/ptm/m/it/10 **kwargs\T1/pcr/m/n/10 ) [94] Underfull \hbox (badness 10000) in paragraph at lines 4108--4108 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ctiVec-tor\T1/ptm/m/n/1 0 , \T1/ptm/m/it/10 axis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4108--4108 \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , Overfull \hbox (1.76465pt too wide) in paragraph at lines 4238--4238 \T1/ptm/m/it/10 **kwargs\T1/pcr/m/n/10 ) [96] Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , \T1/ptm/m/it/10 cor-rec-tion-Map\T1/ptm /m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , \T1/ptm/m/it/10 check_dims=True\T1/ptm /m/n/10 , [97] Underfull \hbox (badness 10000) in paragraph at lines 4452--4452 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , \T1/ptm/m/it/10 bins\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4452--4452 \T1/ptm/m/it/10 range\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , [98] Underfull \hbox (badness 5954) in paragraph at lines 4506--4508 []\T1/ptm/m/n/10 complete sen-sor but on a per- [99] [100] [101] Underfull \hbox (badness 10000) in paragraph at lines 4874--4875 []\T1/pcr/b/n/10 function. For any 1-d vector in this list it will be Underfull \hbox (badness 10000) in paragraph at lines 4877--4878 []\T1/pcr/b/n/10 to mask/remove data as is done with the data block. [102] Underfull \hbox (badness 10000) in paragraph at lines 4883--4884 []\T1/pcr/b/n/10 where True denotes remove of an image at this position. Underfull \hbox (badness 10000) in paragraph at lines 4886--4887 []\T1/pcr/b/n/10 indices is given, the evaluation function is NOT evaluated. Underfull \hbox (badness 10000) in paragraph at lines 4907--4907 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , \T1/ptm/m/it/10 fil-l-Value=None\T1/ptm /m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4907--4907 \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dType= for immediate help. ... l.5102 \item {} \begin{description} Underfull \hbox (badness 5711) in paragraph at lines 5135--5138 []\T1/ptm/m/n/10 the iden-ti-fied pat- [105] Underfull \hbox (badness 10000) in paragraph at lines 5289--5289 \T1/ptm/m/it/10 nCells=1, dType=\T1/ptm/m/n/10 , [106] Underfull \hbox (badness 10000) in paragraph at lines 5363--5363 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5363--5363 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5416--5416 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5416--5416 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5469--5469 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5469--5469 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5469--5469 \T1/ptm/m/it/10 Pulse=False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 statsPer- Underfull \hbox (badness 10000) in paragraph at lines 5469--5469 \T1/ptm/m/it/10 Gain=False\T1/ptm/m/n/10 , \T1/ptm/m/it/10 thresh- Underfull \hbox (badness 10000) in paragraph at lines 5469--5469 \T1/ptm/m/it/10 old-High=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 thresh- Underfull \hbox (badness 10000) in paragraph at lines 5469--5469 \T1/ptm/m/it/10 old-Low=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 thresh- Underfull \hbox (badness 10000) in paragraph at lines 5469--5469 \T1/ptm/m/it/10 oldA-gain-st-Noise=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5469--5469 \T1/ptm/m/it/10 std=True\T1/ptm/m/n/10 , \T1/ptm/m/it/10 min-Max=True\T1/ptm/m/ n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5469--5469 \T1/ptm/m/it/10 mean=True\T1/ptm/m/n/10 , \T1/ptm/m/it/10 me-dian=False\T1/ptm/ m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5469--5469 \T1/ptm/m/it/10 noiseMap=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 gains=1\T1/ptm/m/ n/10 , [107] Underfull \hbox (badness 10000) in paragraph at lines 5583--5583 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5583--5583 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , [108] Underfull \hbox (badness 10000) in paragraph at lines 5636--5636 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5636--5636 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5677--5677 []\T1/ptm/m/it/10 offsetmap\T1/ptm/m/n/10 , \T1/ptm/m/it/10 noisemap\T1/ptm/m/n /10 , [109] Underfull \hbox (badness 10000) in paragraph at lines 5786--5786 []\T1/ptm/m/it/10 offsetmap\T1/ptm/m/n/10 , \T1/ptm/m/it/10 noisemap\T1/ptm/m/n /10 , [110] Underfull \hbox (badness 10000) in paragraph at lines 5860--5860 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , \T1/ptm/m/it/10 par-al-lel=Tru e\T1/ptm/m/n/10 , [111] [112] Underfull \hbox (badness 10000) in paragraph at lines 6185--6185 []\T1/ptm/m/it/10 functionsToProfile\T1/ptm/m/n/10 , \T1/ptm/m/it/10 val-uesTo- VaryCpu\T1/ptm/m/n/10 , \T1/ptm/m/it/10 val-uesTo- Underfull \hbox (badness 10000) in paragraph at lines 6185--6185 \T1/ptm/m/it/10 VaryGpu=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nRe-peats=None\T1/ ptm/m/n/10 , \T1/ptm/m/it/10 val-uesTo-P-re- Underfull \hbox (badness 7081) in paragraph at lines 6197--6197 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 read-Fun\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 size\T1/ptm/m/n/10 , \T1/ptm/m/it/10 chunk-Size\T1/ptm/m/n /10 , \T1/ptm/m/it/10 *args\T1/ptm/m/n/10 , [113] Overfull \hbox (131.85474pt too wide) in paragraph at lines 6306--6306 []\T1/ptm/m/it/10 asic, Overfull \hbox (124.35486pt too wide) in paragraph at lines 6306--6306 \T1/ptm/m/it/10 in- Overfull \hbox (145.64474pt too wide) in paragraph at lines 6306--6306 \T1/ptm/m/it/10 put_file, Overfull \hbox (129.35486pt too wide) in paragraph at lines 6306--6306 \T1/ptm/m/it/10 out- Overfull \hbox (172.30466pt too wide) in paragraph at lines 6306--6306 \T1/ptm/m/it/10 put_file_name, Overfull \hbox (181.83458pt too wide) in paragraph at lines 6306--6306 \T1/ptm/m/it/10 max_part=None, Overfull \hbox (173.7644pt too wide) in paragraph at lines 6306--6306 \T1/ptm/m/it/10 col_spec=[0]\T1/pcr/m/n/10 ) [114] [115] Overfull \hbox (101.85474pt too wide) in paragraph at lines 6498--6498 []\T1/ptm/m/it/10 asic, Overfull \hbox (94.35486pt too wide) in paragraph at lines 6498--6498 \T1/ptm/m/it/10 in- Overfull \hbox (115.64474pt too wide) in paragraph at lines 6498--6498 \T1/ptm/m/it/10 put_file, Overfull \hbox (99.35486pt too wide) in paragraph at lines 6498--6498 \T1/ptm/m/it/10 out- Overfull \hbox (142.30466pt too wide) in paragraph at lines 6498--6498 \T1/ptm/m/it/10 put_file_name, Overfull \hbox (151.83458pt too wide) in paragraph at lines 6498--6498 \T1/ptm/m/it/10 max_part=None, Overfull \hbox (140.2644pt too wide) in paragraph at lines 6498--6498 \T1/ptm/m/it/10 col_spec=[0], Overfull \hbox (105.2549pt too wide) in paragraph at lines 6498--6498 \T1/ptm/m/it/10 back- Overfull \hbox (151.74435pt too wide) in paragraph at lines 6498--6498 \T1/ptm/m/it/10 ing_store=True\T1/pcr/m/n/10 ) [116] [117] Overfull \hbox (29.85474pt too wide) in paragraph at lines 6729--6729 []\T1/ptm/m/it/10 asic\T1/ptm/m/n/10 , Overfull \hbox (22.35486pt too wide) in paragraph at lines 6729--6729 \T1/ptm/m/it/10 in- Overfull \hbox (55.9647pt too wide) in paragraph at lines 6729--6729 \T1/ptm/m/it/10 put_fname\T1/ptm/m/n/10 , Overfull \hbox (59.85419pt too wide) in paragraph at lines 6729--6729 \T1/ptm/m/it/10 pixel_v_list\T1/ptm/m/n/10 , Overfull \hbox (60.41425pt too wide) in paragraph at lines 6729--6729 \T1/ptm/m/it/10 pixel_u_list\T1/ptm/m/n/10 , Overfull \hbox (69.29413pt too wide) in paragraph at lines 6729--6729 \T1/ptm/m/it/10 mem_cell_list\T1/ptm/m/n/10 , Overfull \hbox (62.17444pt too wide) in paragraph at lines 6729--6729 \T1/ptm/m/it/10 n_processes\T1/ptm/m/n/10 , Overfull \hbox (65.96419pt too wide) in paragraph at lines 6729--6729 \T1/ptm/m/it/10 safety_factor\T1/ptm/m/n/10 , Overfull \hbox (27.35486pt too wide) in paragraph at lines 6729--6729 \T1/ptm/m/it/10 out- Overfull \hbox (55.9647pt too wide) in paragraph at lines 6729--6729 \T1/ptm/m/it/10 put_fname\T1/ptm/m/n/10 , Overfull \hbox (69.83406pt too wide) in paragraph at lines 6729--6729 \T1/ptm/m/it/10 reuse_results\T1/pcr/m/n/10 ) Overfull \hbox (11.85474pt too wide) in paragraph at lines 6779--6779 []\T1/ptm/m/it/10 asic\T1/ptm/m/n/10 , Overfull \hbox (4.35486pt too wide) in paragraph at lines 6779--6779 \T1/ptm/m/it/10 in- Overfull \hbox (65.82457pt too wide) in paragraph at lines 6779--6779 \T1/ptm/m/it/10 put_fname=None\T1/ptm/m/n/10 , Overfull \hbox (9.35486pt too wide) in paragraph at lines 6779--6779 \T1/ptm/m/it/10 out- Overfull \hbox (65.82457pt too wide) in paragraph at lines 6779--6779 \T1/ptm/m/it/10 put_fname=None\T1/ptm/m/n/10 , Overfull \hbox (74.71419pt too wide) in paragraph at lines 6779--6779 \T1/ptm/m/it/10 safety_factor=1000\T1/ptm/m/n/10 , Overfull \hbox (66.56442pt too wide) in paragraph at lines 6779--6779 \T1/ptm/m/it/10 plot_prefix=None\T1/ptm/m/n/10 , Overfull \hbox (55.83444pt too wide) in paragraph at lines 6779--6779 \T1/ptm/m/it/10 plot_dir=None\T1/ptm/m/n/10 , Overfull \hbox (8.97473pt too wide) in paragraph at lines 6779--6779 \T1/ptm/m/it/10 cre- Overfull \hbox (60.63423pt too wide) in paragraph at lines 6779--6779 \T1/ptm/m/it/10 ate_plots=False\T1/ptm/m/n/10 , Overfull \hbox (64.62431pt too wide) in paragraph at lines 6779--6779 \T1/ptm/m/it/10 log_level='info'\T1/pcr/m/n/10 ) [118] Overfull \hbox (30.16438pt too wide) in paragraph at lines 6881--6881 []\T1/ptm/m/it/10 list_to_check\T1/ptm/m/n/10 , Overfull \hbox (32.12476pt too wide) in paragraph at lines 6887--6887 []\T1/ptm/m/it/10 file_name\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 6893--6893 []\T1/ptm/m/it/10 asic\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Underfull \hbox (badness 10000) in paragraph at lines 6893--6893 \T1/ptm/m/it/10 put_file\T1/ptm/m/n/10 , Overfull \hbox (5.85419pt too wide) in paragraph at lines 6893--6893 \T1/ptm/m/it/10 pixel_v_list\T1/ptm/m/n/10 , Overfull \hbox (6.41425pt too wide) in paragraph at lines 6893--6893 \T1/ptm/m/it/10 pixel_u_list\T1/ptm/m/n/10 , Overfull \hbox (15.29413pt too wide) in paragraph at lines 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(14.12476pt too wide) in paragraph at lines 6917--6917 []\T1/ptm/m/it/10 file_name\T1/pcr/m/n/10 ) [119] Overfull \hbox (18.97485pt too wide) in paragraph at lines 6961--6961 []\T1/ptm/m/it/10 shape, Overfull \hbox (4.35486pt too wide) in paragraph at lines 6961--6961 \T1/ptm/m/it/10 in- Overfull \hbox (25.64474pt too wide) in paragraph at lines 6961--6961 \T1/ptm/m/it/10 put_file, Overfull \hbox (43.5045pt too wide) in paragraph at lines 6961--6961 \T1/ptm/m/it/10 asics=None, Overfull \hbox (33.05455pt too wide) in paragraph at lines 6961--6961 \T1/ptm/m/it/10 nCells=1, Overfull \hbox (15.45485pt too wide) in paragraph at lines 6961--6961 \T1/ptm/m/it/10 mem- Overfull \hbox (38.05455pt too wide) in paragraph at lines 6961--6961 \T1/ptm/m/it/10 Cells=352, Overfull \hbox (50.44444pt too wide) in paragraph at lines 6961--6961 \T1/ptm/m/it/10 dType=, Overfull \hbox (61.83458pt too wide) in paragraph at lines 6961--6961 \T1/ptm/m/it/10 max_part=None, Overfull \hbox (50.2644pt too wide) in paragraph at lines 6961--6961 \T1/ptm/m/it/10 col_spec=[0], Overfull \hbox (9.35486pt too wide) in paragraph at lines 6961--6961 \T1/ptm/m/it/10 out- Overfull \hbox (53.50461pt too wide) in paragraph at lines 6961--6961 \T1/ptm/m/it/10 put_file=None, Overfull \hbox (74.71419pt too wide) in paragraph at lines 6961--6961 \T1/ptm/m/it/10 safety_factor=1000, Overfull \hbox (104.43364pt too wide) in paragraph at lines 6961--6961 \T1/ptm/m/it/10 reuse_gather_results=True, Overfull \hbox (108.42351pt too wide) in paragraph at lines 6961--6961 \T1/ptm/m/it/10 reuse_process_results=True, Overfull \hbox (37.76465pt too wide) in paragraph at lines 6961--6961 \T1/ptm/m/it/10 **kwargs\T1/pcr/m/n/10 ) Overfull \hbox (7.07484pt too wide) in paragraph at lines 6975--6975 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6975--6975 \T1/ptm/m/it/10 pro- Overfull \hbox (31.70407pt too wide) in paragraph at lines 6975--6975 \T1/ptm/m/it/10 cess_results\T1/ptm/m/n/10 , Overfull \hbox (37.2843pt too wide) in paragraph at lines 6975--6975 \T1/ptm/m/it/10 asics=array([ Underfull \hbox (badness 10000) in paragraph at lines 6975--6975 \T1/ptm/m/it/10 9\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6975--6975 \T1/ptm/m/it/10 10\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6975--6975 \T1/ptm/m/it/10 11\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6975--6975 \T1/ptm/m/it/10 12\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6975--6975 \T1/ptm/m/it/10 13\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6975--6975 \T1/ptm/m/it/10 14\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6975--6975 \T1/ptm/m/it/10 15\T1/ptm/m/n/10 , Overfull \hbox (0.96486pt too wide) in paragraph at lines 6975--6975 \T1/ptm/m/it/10 16])\T1/ptm/m/n/10 , Overfull \hbox (21.05455pt too wide) in paragraph at lines 6975--6975 \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , Overfull \hbox (38.44444pt too wide) in paragraph at lines 6975--6975 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , Overfull \hbox (25.76465pt too wide) in paragraph at lines 6975--6975 \T1/ptm/m/it/10 **kwargs\T1/pcr/m/n/10 ) [120] [121] Underfull \hbox (badness 10000) in paragraph at lines 7172--7172 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7172--7172 \T1/ptm/m/it/10 thresh- Underfull \hbox (badness 10000) in paragraph at lines 7172--7172 \T1/ptm/m/it/10 oldMap\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 7172--7172 \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , Overfull \hbox (14.44444pt too wide) in paragraph at lines 7172--7172 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , Overfull \hbox (1.76465pt too wide) in paragraph at lines 7172--7172 \T1/ptm/m/it/10 **kwargs\T1/pcr/m/n/10 ) [122] [123] Underfull \hbox (badness 10000) in paragraph at lines 7323--7325 []\T1/ptm/m/n/10 Usually the Underfull \hbox (badness 10000) in paragraph at lines 7363--7371 []\T1/ptm/m/n/10 __init__(self,FileName) Get-N-u-mIm-ages(self) def Get-Data(se lf,Index, Underfull \hbox (badness 10000) in paragraph at lines 7363--7371 \T1/ptm/m/n/10 DataType=^^Q^^P,Pos=None,Size=None): Get-Pixel(self,Index,Positi on) Get-H-eader(self,Index) Get-Static- Overfull \hbox (4.81061pt too wide) in paragraph at lines 7363--7371 \T1/ptm/m/n/10 Header(self,Index) WriteIm-age (self,Header,Data,Append=1,DataTy pe=^^Q^^P,WriteAsUnsigened=0,ByteOrder=^^Q^^P) [124] [125] [126] [127] [128] [129] Underfull \hbox (badness 10000) in paragraph at lines 8018--8018 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 path='/stream'\T1/pt m/m/n/10 , Overfull \hbox (37.07484pt too wide) in paragraph at lines 8105--8105 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , Overfull \hbox (81.04456pt too wide) in paragraph at lines 8105--8105 \T1/ptm/m/it/10 noiseMap=None\T1/ptm/m/n/10 , Overfull \hbox (51.05455pt too wide) in paragraph at lines 8105--8105 \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , Overfull \hbox (68.44444pt too wide) in paragraph at lines 8105--8105 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , Overfull \hbox (55.76465pt too wide) in paragraph at lines 8105--8105 \T1/ptm/m/it/10 **kwargs\T1/pcr/m/n/10 ) [130] [131] [132] Underfull \hbox (badness 10000) in paragraph at lines 8385--8385 []\T1/ptm/m/it/10 h\T1/ptm/m/n/10 , \T1/ptm/m/it/10 x_values\T1/ptm/m/n/10 , Overfull \hbox (20.07457pt too wide) in paragraph at lines 8416--8416 []\T1/ptm/m/it/10 cells\T1/ptm/m/n/10 , Overfull \hbox (38.04451pt too wide) in paragraph at lines 8416--8416 \T1/ptm/m/it/10 cellTable\T1/ptm/m/n/10 , Overfull \hbox (37.30455pt too wide) in paragraph at lines 8416--8416 \T1/ptm/m/it/10 sc_width\T1/ptm/m/n/10 , Overfull \hbox (40.07457pt too wide) in paragraph at lines 8416--8416 \T1/ptm/m/it/10 sc_height\T1/ptm/m/n/10 , Overfull \hbox (10.35486pt too wide) in paragraph at lines 8416--8416 \T1/ptm/m/it/10 in- Overfull \hbox (18.20482pt too wide) in paragraph at lines 8416--8416 \T1/ptm/m/it/10 put\T1/pcr/m/n/10 ) Overfull \hbox (8.56117pt too wide) in paragraph at lines 8422--8425 [] Underfull \hbox (badness 10000) in paragraph at lines 8426--8429 [] Underfull \hbox (badness 10000) in paragraph at lines 8447--8447 \T1/ptm/m/it/10 cal-Method\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 8447--8447 \T1/ptm/m/it/10 fit_segment\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 8447--8447 \T1/ptm/m/it/10 par_ini\T1/ptm/m/n/10 , [133] Underfull \hbox (badness 10000) in paragraph at lines 8508--8508 []\T1/ptm/m/it/10 cells\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 8508--8508 \T1/ptm/m/it/10 x_vals\T1/ptm/m/n/10 , Overfull \hbox (1.19469pt too wide) in paragraph at lines 8508--8508 \T1/ptm/m/it/10 par_ini\T1/ptm/m/n/10 , [134] Underfull \hbox (badness 10000) in paragraph at lines 8596--8596 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 8596--8596 \T1/ptm/m/it/10 read- Underfull \hbox (badness 10000) in paragraph at lines 8596--8596 \T1/ptm/m/it/10 Fun\T1/ptm/m/n/10 , \T1/ptm/m/it/10 size\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 8596--8596 \T1/ptm/m/it/10 chunk-Size\T1/ptm/m/n/10 , Overfull \hbox (23.16454pt too wide) in paragraph at lines 8596--8596 \T1/ptm/m/it/10 filesRange=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 8596--8596 \T1/ptm/m/it/10 *args\T1/ptm/m/n/10 , [135] [136] [137] Underfull \hbox (badness 10000) in paragraph at lines 8926--8928 []\T1/ptm/m/n/10 Usually the [138] [139] [140] Underfull \hbox (badness 10000) in paragraph at lines 9388--9388 []\T1/ptm/m/it/10 ax\T1/ptm/m/n/10 , \T1/ptm/m/it/10 d\T1/ptm/m/n/10 , \T1/ptm/ m/it/10 cmap=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 norm=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9388--9388 \T1/ptm/m/it/10 vmin=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 vmax=None\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 al-pha=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9388--9388 \T1/ptm/m/it/10 linewidths=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 edge-col-ors='f ace'\T1/ptm/m/n/10 , \T1/ptm/m/it/10 re- Underfull \hbox (badness 10000) in paragraph at lines 9388--9388 \T1/ptm/m/it/10 duce_C_function=\T1/ptm/m/n/10 , [141] Underfull \hbox (badness 6792) in paragraph at lines 9508--9508 []\T1/ptm/m/it/10 data\T1/ptm/m/n/10 , \T1/ptm/m/it/10 axes\T1/ptm/m/n/10 , \T1 /ptm/m/it/10 ax-is-Names\T1/ptm/m/n/10 , \T1/ptm/m/it/10 ti-tle=None\T1/ptm/m/n /10 , [142] Underfull \hbox (badness 10000) in paragraph at lines 9534--9535 []\T1/pcr/b/n/10 will be passed to the matplotlib fill_between() function. [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] Underfull \hbox (badness 10000) in paragraph at lines 12971--12971 []\T1/ptm/m/it/10 host=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 port=None\T1/ptm/m/ n/10 , \T1/ptm/m/it/10 read-Han- Underfull \hbox (badness 10000) in paragraph at lines 12991--12991 []\T1/ptm/m/it/10 host=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 port=None\T1/ptm/m/ n/10 , \T1/ptm/m/it/10 read-Han- [159] [160] [161] [162] Chapter 5. [163] [164] Overfull \hbox (0.6225pt too wide) in paragraph at lines 13286--13287 []\T1/pcr/m/n/10 XFELDetAna.algorithms.characterize_cti\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 13287--13288 []\T1/pcr/m/n/10 XFELDetAna.algorithms.characterize_noise\T1/ptm/m/n/10 , Overfull \hbox (24.6225pt too wide) in paragraph at lines 13288--13289 []\T1/pcr/m/n/10 XFELDetAna.algorithms.characterize_relgain\T1/ptm/m/n/10 , Overfull \hbox (18.6225pt too wide) in paragraph at lines 13289--13290 []\T1/pcr/m/n/10 XFELDetAna.algorithms.correct_common_mode\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13291--13292 []\T1/pcr/m/n/10 XFELDetAna.algorithms.correct_offset\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13292--13293 []\T1/pcr/m/n/10 XFELDetAna.algorithms.correct_relgain\T1/ptm/m/n/10 , Overfull \hbox (54.6225pt too wide) in paragraph at lines 13295--13296 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.calc_offset_and_noise\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 13296--13297 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.correct_common_mode\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 13297--13298 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.correct_offset\T1/ptm/m/n/10 , Overfull \hbox (18.6225pt too wide) in paragraph at lines 13298--13299 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.correct_relgain\T1/ptm/m/n/10 , Overfull \hbox (102.6225pt too wide) in paragraph at lines 13300--13301 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.calc_offset_and_noise\T1/ptm /m/n/10 , Overfull \hbox (90.6225pt too wide) in paragraph at lines 13301--13302 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m /n/10 , Overfull \hbox (138.6225pt too wide) in paragraph at lines 13302--13303 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.correct_common_mode_batcher\ T1/ptm/m/n/10 , Overfull \hbox (78.6225pt too wide) in paragraph at lines 13303--13304 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.simple_correction\T1/ptm/m/n /10 , Overfull \hbox (48.6225pt too wide) in paragraph at lines 13304--13305 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.split_events\T1/ptm/m/n/10 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 13305--13306 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.statistics\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 13306--13307 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.util\T1/ptm/m/n/10 , Overfull \hbox (60.6225pt too wide) in paragraph at lines 13307--13308 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.xfelgpukernels\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 13308--13309 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.split_events\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13309--13310 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.statistics\T1/ptm/m/n/10 , Overfull \hbox (18.6225pt too wide) in paragraph at lines 13311--13312 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.xfelcalgputools\T1/ptm/m/n/10 , Overfull \hbox (60.6225pt too wide) in paragraph at lines 13327--13328 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.characterize_dynrange\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 13328--13329 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms\T1/ptm/m/n/10 , Overfull \hbox (84.6225pt too wide) in paragraph at lines 13329--13330 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms.gather\T1/ptm/m/ n/10 , Overfull \hbox (90.6225pt too wide) in paragraph at lines 13330--13331 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms.process\T1/ptm/m /n/10 , Overfull \hbox (72.6225pt too wide) in paragraph at lines 13331--13332 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms.util\T1/ptm/m/n/ 10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 13333--13334 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.gpu.kernels\T1/ptm/m/n/10 , Overfull \hbox (90.6225pt too wide) in paragraph at lines 13334--13335 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.gpu.kernels.threshold_gain\T1/ptm/m /n/10 , [165] Overfull \hbox (42.6225pt too wide) in paragraph at lines 13335--13336 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.gpu.threshold_gain\T1/ptm/m/n/10 , Overfull \hbox (18.6225pt too wide) in paragraph at lines 13336--13337 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.merge_dynrange\T1/ptm/m/n/10 , Overfull \hbox (18.6225pt too wide) in paragraph at lines 13339--13340 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.threshold_gain\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13343--13344 []\T1/pcr/m/n/10 XFELDetAna.detectors.edf_data.EdfFile\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13344--13345 []\T1/pcr/m/n/10 XFELDetAna.detectors.edf_data.loadedf\T1/ptm/m/n/10 , 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Overfull \hbox (6.6225pt too wide) in paragraph at lines 13358--13359 []\T1/pcr/m/n/10 XFELDetAna.detectors.jungfrau.readerPSI\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13363--13364 []\T1/pcr/m/n/10 XFELDetAna.detectors.pnccd.frm6reader\T1/ptm/m/n/10 , [166] (./src.ind Underfull \hbox (badness 10000) in paragraph at lines 8--9 []\T1/pcr/m/n/10 _axisFuncWrapper() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 9--11 []\T1/pcr/m/n/10 _commonmodeBase3d \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule X FELDe- Overfull \hbox (26.01056pt too wide) in paragraph at lines 9--11 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Overfull \hbox (26.01056pt too wide) in paragraph at lines 11--13 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 13--15 []\T1/pcr/m/n/10 _commonmodeBase3dBitonicZ1 Underfull \hbox (badness 10000) in paragraph at lines 13--15 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Overfull \hbox (26.01056pt too wide) in paragraph at lines 13--15 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 15--16 []\T1/pcr/m/n/10 _decorateModule() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule X FELDe- Underfull \hbox (badness 5331) in paragraph at lines 16--18 []\T1/pcr/m/n/10 _fill_between_steps() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 18--20 []\T1/pcr/m/n/10 _fit_spectrum() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFE LDe- Underfull \hbox (badness 10000) in paragraph at lines 18--20 \T1/ptm/m/it/10 tAna.detectors.jungfrau.characterize_jfgain\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/pcr/m/n/10 _gainMapCurrSourceChunk() Underfull \hbox (badness 10000) in paragraph at lines 20--22 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tAna.algorithms.gpu.correct_common_mode\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 28--30 []\T1/pcr/m/n/10 _gpuCommonMode2D() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 28--30 \T1/ptm/m/it/10 tAna.algorithms.gpu.correct_common_mode\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/pcr/m/n/10 _gpuCommonMode3D() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 30--32 \T1/ptm/m/it/10 tAna.algorithms.gpu.correct_common_mode\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/pcr/m/n/10 add_can_expand \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/pcr/m/n/10 add_can_expand \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 40--42 \T1/ptm/m/it/10 tAna.util.knumpy.krbMaskedArray at-tribute\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 42--43 []\T1/pcr/m/n/10 add_docstring() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFE LDe- Underfull \hbox (badness 10000) in paragraph at lines 44--45 []\T1/pcr/m/n/10 add_newdoc_ufunc() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 45--47 []\T1/pcr/m/n/10 AgipdDynamicRange \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFE LDe- Underfull \hbox (badness 10000) in paragraph at lines 45--47 \T1/ptm/m/it/10 tAna.detectors.agipd.characterize_dynrange\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 47--49 []\T1/pcr/m/n/10 AgipdDynamicRangeGatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 47--49 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Overfull \hbox (11.28064pt too wide) in paragraph at lines 47--49 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.gather\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 49--51 []\T1/pcr/m/n/10 AgipdDynamicRangeSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 49--51 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Overfull \hbox (15.04054pt too wide) in paragraph at lines 49--51 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 51--53 []\T1/pcr/m/n/10 AgipdMergeDynamicRange \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class i n XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 54--56 []\T1/pcr/m/n/10 algorithmDescription() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (21.62013pt too wide) in paragraph at lines 54--56 \T1/ptm/m/it/10 tAna.algorithms.characterize_noise.NoiseCalculator Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/pcr/m/n/10 algorithmDescription() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (22.55005pt too wide) in paragraph at lines 56--58 \T1/ptm/m/it/10 tAna.algorithms.characterize_noise.OffsetCalculator Underfull \hbox (badness 10000) in paragraph at lines 58--60 []\T1/pcr/m/n/10 algorithmDescription() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (44.73009pt too wide) in paragraph at lines 58--60 \T1/ptm/m/it/10 tAna.algorithms.characterize_relgain.GainMapCalculator Underfull \hbox (badness 10000) in paragraph at lines 60--62 []\T1/pcr/m/n/10 algorithmDescription() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (2.07982pt too wide) in paragraph at lines 60--62 \T1/ptm/m/it/10 tAna.algorithms.correct_offset.OffsetCorrection [167] Underfull \hbox (badness 10000) in paragraph at lines 62--64 []\T1/pcr/m/n/10 algorithmDescription() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (38.16962pt too wide) in paragraph at lines 62--64 \T1/ptm/m/it/10 tAna.algorithms.correct_relgain.RelativeGainCorrection Underfull \hbox (badness 10000) in paragraph at lines 64--66 []\T1/pcr/m/n/10 algorithmDescription() \T1/ptm/m/n/10 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[]\T1/pcr/m/n/10 algorithmDescription() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 72--74 \T1/ptm/m/it/10 tAna.algorithms.statistics.MinCalculator Underfull \hbox (badness 10000) in paragraph at lines 74--76 []\T1/pcr/m/n/10 algorithmDescription() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 74--76 \T1/ptm/m/it/10 tAna.algorithms.statistics.StatCalculator Underfull \hbox (badness 10000) in paragraph at lines 76--78 []\T1/pcr/m/n/10 algorithmDescription() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 76--78 \T1/ptm/m/it/10 tAna.algorithms.statistics.StdCalculator Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/pcr/m/n/10 algorithmDescription() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 78--80 \T1/ptm/m/it/10 tAna.core.mapcalculator.MapCalculator Underfull \hbox (badness 10000) in paragraph at lines 80--82 []\T1/pcr/m/n/10 algorithmDescription() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (80.11983pt too wide) in paragraph at lines 80--82 \T1/ptm/m/it/10 tAna.detectors.jungfrau.characterize_jfgain.JFGainMapCalculator Underfull \hbox (badness 10000) in paragraph at lines 82--84 []\T1/pcr/m/n/10 algorithmSpecificSettings() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XF ELDe- Underfull \hbox (badness 10000) in paragraph at lines 82--84 \T1/ptm/m/it/10 tAna.core.mapcalculator.MapCalculator Underfull \hbox (badness 10000) in paragraph at lines 86--87 []\T1/pcr/m/n/10 ALLOW_THREADS() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFE LDe- Underfull \hbox (badness 10000) in paragraph at lines 95--96 []\T1/pcr/m/n/10 apply_along_axis() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 96--97 []\T1/pcr/m/n/10 apply_over_axes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule X FELDe- Underfull \hbox (badness 10000) in paragraph at lines 107--108 []\T1/pcr/m/n/10 argpartition() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFEL De- Underfull \hbox (badness 10000) in paragraph at lines 112--113 []\T1/pcr/m/n/10 array2string() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFEL De- Underfull \hbox (badness 10000) in paragraph at lines 113--114 []\T1/pcr/m/n/10 array_equal() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 114--115 []\T1/pcr/m/n/10 array_equiv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 116--117 []\T1/pcr/m/n/10 array_split() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 120--121 []\T1/pcr/m/n/10 asarray_chkfinite() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 121--122 []\T1/pcr/m/n/10 ascontiguousarray() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- 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(badness 10000) in paragraph at lines 150--152 []\T1/pcr/m/n/10 biggest_entries() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule X FELDe- Overfull \hbox (15.04054pt too wide) in paragraph at lines 150--152 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 152--153 []\T1/pcr/m/n/10 binary_repr() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 154--155 []\T1/pcr/m/n/10 bitwise_and() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 155--156 []\T1/pcr/m/n/10 bitwise_not() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 157--158 []\T1/pcr/m/n/10 bitwise_xor() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 163--164 []\T1/pcr/m/n/10 broadcast_arrays() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 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\T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRan geSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 187--189 []\T1/pcr/m/n/10 charge_sharing() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XF ELDe- Underfull \hbox (badness 10000) in paragraph at lines 189--191 []\T1/pcr/m/n/10 check_file_exists() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Overfull \hbox (15.04054pt too wide) in paragraph at lines 189--191 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 191--193 []\T1/pcr/m/n/10 check_file_exists() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 191--193 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.util\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 193--195 []\T1/pcr/m/n/10 check_file_number() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox 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\hbox (badness 10000) in paragraph at lines 207--209 []\T1/pcr/m/n/10 Chi2Functor \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 209--211 []\T1/pcr/m/n/10 chi_square_fit() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XF ELDe- [169] Underfull \hbox (badness 10000) in paragraph at lines 213--215 []\T1/pcr/m/n/10 classify() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 213--215 \T1/ptm/m/it/10 tAna.algorithms.split_event.PatternClassifier Underfull \hbox (badness 10000) in paragraph at lines 215--217 []\T1/pcr/m/n/10 clearSum() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (80.11983pt too wide) in paragraph at lines 215--217 \T1/ptm/m/it/10 tAna.detectors.jungfrau.characterize_jfgain.JFGainMapCalculator Underfull \hbox (badness 10000) in paragraph at lines 221--223 []\T1/pcr/m/n/10 collect_incoming_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe - Underfull \hbox (badness 10000) in paragraph at lines 223--224 []\T1/pcr/m/n/10 column_stack() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFEL De- Underfull \hbox (badness 10000) in paragraph at lines 224--225 []\T1/pcr/m/n/10 common_type() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 225--227 []\T1/pcr/m/n/10 commonmode3d \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe - Overfull \hbox (26.01056pt too wide) in paragraph at lines 225--227 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 227--229 []\T1/pcr/m/n/10 commonmode3dBitonic \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Overfull \hbox (26.01056pt too wide) in paragraph at lines 227--229 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Underfull \hbox (badness 5331) in paragraph at lines 229--231 []\T1/pcr/m/n/10 commonmode3dBitonicZ1 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le 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\hbox (badness 10000) in paragraph at lines 255--257 []\T1/pcr/m/n/10 correct() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 255--257 \T1/ptm/m/it/10 tAna.algorithms.correction.CorrectionBase Underfull \hbox (badness 10000) in paragraph at lines 257--259 []\T1/pcr/m/n/10 correct() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 257--259 \T1/ptm/m/it/10 tAna.algorithms.unitary.UnitaryCalculator Underfull \hbox (badness 10000) in paragraph at lines 259--261 []\T1/pcr/m/n/10 CorrectionBase \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe - Underfull \hbox (badness 10000) in paragraph at lines 264--265 []\T1/pcr/m/n/10 count_nonzero() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFE LDe- Underfull \hbox (badness 10000) in paragraph at lines 267--269 []\T1/pcr/m/n/10 CTICalculator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 269--271 []\T1/pcr/m/n/10 CTICorrection \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 275--277 []\T1/pcr/m/n/10 current_list_to_ndarray() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFEL De- Overfull \hbox (76.21066pt too wide) in paragraph at lines 275--277 \T1/ptm/m/it/10 tAna.detectors.agipd.merge_dynrange.AgipdMergeDynamicRange Underfull \hbox (badness 10000) in paragraph at lines 282--283 []\T1/pcr/m/n/10 data \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.util.knumpy.p ulseAxis at-tribute\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 283--284 []\T1/pcr/m/n/10 data \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.util.knumpy.s tackAxis at-tribute\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 285--286 []\T1/pcr/m/n/10 dataReceiver() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFEL De- Underfull \hbox (badness 10000) in paragraph at lines 286--287 []\T1/pcr/m/n/10 DataSelector \T1/ptm/m/n/10 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[]\T1/pcr/m/n/10 get() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.algorithms.c haracterize_cti.CTICalculator Overfull \hbox (52.39992pt too wide) in paragraph at lines 490--492 []\T1/pcr/m/n/10 get() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.algorithms.c haracterize_noise.NoiseCalculator Overfull \hbox (53.32983pt too wide) in paragraph at lines 492--494 []\T1/pcr/m/n/10 get() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.algorithms.c haracterize_noise.OffsetCalculator Overfull \hbox (75.50987pt too wide) in paragraph at lines 494--496 []\T1/pcr/m/n/10 get() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.algorithms.c haracterize_relgain.GainMapCalculator Overfull \hbox (106.9301pt too wide) in paragraph at lines 496--498 []\T1/pcr/m/n/10 get() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.algorithms.c orrect_common_mode.CommonModeCorrection Overfull \hbox (99.83972pt too wide) in paragraph at lines 498--500 []\T1/pcr/m/n/10 get() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.algorithms.g 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in paragraph at lines 627--629 []\T1/pcr/m/n/10 getNoise() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (69.05994pt too wide) in paragraph at lines 627--629 \T1/ptm/m/it/10 tAna.algorithms.gpu.calc_offset_and_noise.GpuOffsetNoiseCalc Underfull \hbox (badness 10000) in paragraph at lines 629--631 []\T1/pcr/m/n/10 GetNumImages() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 629--631 \T1/ptm/m/it/10 tAna.detectors.edf_data.EdfFile.EdfFile Underfull \hbox (badness 10000) in paragraph at lines 631--633 []\T1/pcr/m/n/10 getOffset() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (21.62013pt too wide) in paragraph at lines 631--633 \T1/ptm/m/it/10 tAna.algorithms.characterize_noise.NoiseCalculator Underfull \hbox (badness 10000) in paragraph at lines 633--635 []\T1/pcr/m/n/10 getOffset() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (69.05994pt too wide) in paragraph at lines 633--635 \T1/ptm/m/it/10 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selection.DataSelector [175] Overfull \hbox (10.94975pt too wide) in paragraph at lines 701--703 []\T1/pcr/m/n/10 INDICES \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.algorithms .selection.DataSelector Underfull \hbox (badness 10000) in paragraph at lines 710--712 []\T1/pcr/m/n/10 init_metadata() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (162.59938pt too wide) in paragraph at lines 710--712 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRang eGatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 712--714 []\T1/pcr/m/n/10 init_metadata() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (139.36955pt too wide) in paragraph at lines 712--714 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRan geSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 714--716 []\T1/pcr/m/n/10 init_with_nan() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFE LDe- Overfull \hbox (15.04054pt too wide) in paragraph 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paragraph at lines 724--725 []\T1/pcr/m/n/10 int_asbuffer() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFEL De- Underfull \hbox (badness 10000) in paragraph at lines 725--727 []\T1/pcr/m/n/10 integrate_result() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (74.74982pt too wide) in paragraph at lines 725--727 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.ParallelProcess Underfull \hbox (badness 10000) in paragraph at lines 728--729 []\T1/pcr/m/n/10 intersect1d() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 732--733 []\T1/pcr/m/n/10 invertADC \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 738--739 []\T1/pcr/m/n/10 iscomplexobj() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFEL De- Underfull \hbox (badness 10000) in paragraph at lines 739--740 []\T1/pcr/m/n/10 isEnabled() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.core.p rofiler.Profiler Underfull \hbox (badness 10000) in paragraph at lines 752--753 []\T1/pcr/m/n/10 issubclass_() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 754--755 []\T1/pcr/m/n/10 issubsctype() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 760--762 []\T1/pcr/m/n/10 JFChunkReader \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 760--762 \T1/ptm/m/it/10 tAna.detectors.jungfrau.jf_chunk_reader\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 762--764 []\T1/pcr/m/n/10 JFGainMapCalculator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in X FELDe- Underfull \hbox (badness 10000) in paragraph at lines 762--764 \T1/ptm/m/it/10 tAna.detectors.jungfrau.characterize_jfgain\T1/ptm/m/n/10 ), Overfull \hbox (12.9695pt too wide) in paragraph at lines 768--770 []\T1/pcr/m/n/10 kernelC \T1/ptm/m/n/10 (\T1/ptm/m/it/10 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[]\T1/pcr/m/n/10 kernelQ1 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.util.patt ern_kernels.patternkernels Overfull \hbox (18.9701pt too wide) in paragraph at lines 782--784 []\T1/pcr/m/n/10 kernelQ2 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.util.patt ern_kernels.patternkernels Overfull \hbox (18.9701pt too wide) in paragraph at lines 784--786 []\T1/pcr/m/n/10 kernelQ3 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.util.patt ern_kernels.patternkernels Overfull \hbox (12.9695pt too wide) in paragraph at lines 786--788 []\T1/pcr/m/n/10 kernelS \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.util.patte rn_kernels.patternkernels Overfull \hbox (18.9701pt too wide) in paragraph at lines 788--790 []\T1/pcr/m/n/10 kernelT0 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.util.patt ern_kernels.patternkernels Overfull \hbox (18.9701pt too wide) in paragraph at lines 790--792 []\T1/pcr/m/n/10 kernelT1 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.util.patt ern_kernels.patternkernels Overfull \hbox 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XFELDe-tAna.util.patt ern_kernels.patternkernels Overfull \hbox (18.9701pt too wide) in paragraph at lines 804--806 []\T1/pcr/m/n/10 kernelT8 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.util.patt ern_kernels.patternkernels Overfull \hbox (18.9701pt too wide) in paragraph at lines 806--808 []\T1/pcr/m/n/10 kernelT9 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.util.patt ern_kernels.patternkernels Underfull \hbox (badness 10000) in paragraph at lines 809--810 []\T1/pcr/m/n/10 krbMaskedArray \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe - Underfull \hbox (badness 5331) in paragraph at lines 814--816 []\T1/pcr/m/n/10 latexLabelFormatter() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 824--826 []\T1/pcr/m/n/10 linear() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 827--828 []\T1/pcr/m/n/10 little_endian() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFE LDe- Underfull \hbox (badness 10000) in paragraph at lines 829--831 []\T1/pcr/m/n/10 load_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (66.14977pt too wide) in paragraph at lines 829--831 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.ProcessDrscs Underfull \hbox (badness 10000) in paragraph at lines 831--833 []\T1/pcr/m/n/10 loadedf() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 841--842 []\T1/pcr/m/n/10 logical_and() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 842--843 []\T1/pcr/m/n/10 logical_not() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 844--845 []\T1/pcr/m/n/10 logical_xor() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 854--855 []\T1/pcr/m/n/10 make_colormap() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFE LDe- Underfull \hbox (badness 10000) in paragraph at lines 855--857 []\T1/pcr/m/n/10 makeReport() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 855--857 \T1/ptm/m/it/10 tAna.core.mapcalculator.MapCalculator Underfull \hbox (badness 10000) in paragraph at lines 857--858 []\T1/pcr/m/n/10 MapCalculator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Underfull \hbox (badness 7963) in paragraph at lines 858--860 []\T1/pcr/m/n/10 MASK \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.algorithms.se lection.DataSelector Underfull \hbox (badness 10000) in paragraph at lines 860--861 []\T1/pcr/m/n/10 mask_indices() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFEL De- Underfull \hbox (badness 10000) in paragraph at lines 867--869 []\T1/pcr/m/n/10 MaxCalculator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- [177] Underfull \hbox (badness 10000) in paragraph at lines 871--872 []\T1/pcr/m/n/10 maximum_sctype() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XF ELDe- Underfull \hbox (badness 10000) in paragraph at lines 872--873 []\T1/pcr/m/n/10 MAY_SHARE_BOUNDS() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 873--874 []\T1/pcr/m/n/10 MAY_SHARE_EXACT() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule X FELDe- Underfull \hbox (badness 10000) in paragraph at lines 874--875 []\T1/pcr/m/n/10 may_share_memory() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 876--878 []\T1/pcr/m/n/10 MeanCalculator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe - Underfull \hbox (badness 10000) in paragraph at lines 879--881 []\T1/pcr/m/n/10 median3d \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Overfull \hbox (26.01056pt too wide) in paragraph at lines 879--881 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 881--883 []\T1/pcr/m/n/10 median3dBitonic \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFE LDe- Overfull \hbox (26.01056pt too wide) in paragraph at lines 881--883 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 883--885 []\T1/pcr/m/n/10 median3dNetwork() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule X FELDe- Overfull \hbox (61.64029pt too wide) in paragraph at lines 883--885 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode_batcher\T1/ptm/ m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 886--888 []\T1/pcr/m/n/10 MergeDrscs \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 891--892 []\T1/pcr/m/n/10 min_scalar_type() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule X FELDe- Underfull \hbox (badness 10000) in paragraph at lines 892--894 []\T1/pcr/m/n/10 MinCalculator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 895--896 []\T1/pcr/m/n/10 mintypecode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 899--901 []\T1/pcr/m/n/10 ModuleDeprecationWarning() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 919--920 []\T1/pcr/m/n/10 nanpercentile() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFE LDe- Underfull \hbox (badness 10000) in paragraph at lines 921--922 []\T1/pcr/m/n/10 nanquantile() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 926--927 []\T1/pcr/m/n/10 ndenumerate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 931--932 []\T1/pcr/m/n/10 nested_iters() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFEL De- Underfull \hbox (badness 10000) in paragraph at lines 935--937 []\T1/pcr/m/n/10 NoiseCalculator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 937--939 []\T1/pcr/m/n/10 non_empty_trains() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- [178] Underfull \hbox (badness 10000) in paragraph at lines 949--951 []\T1/pcr/m/n/10 oddeven_merge() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFE LDe- Overfull \hbox (61.64029pt too wide) in paragraph at lines 949--951 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode_batcher\T1/ptm/ m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 951--953 []\T1/pcr/m/n/10 oddeven_merge_sort() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e XFELDe- Overfull \hbox (61.64029pt too wide) in paragraph at lines 951--953 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode_batcher\T1/ptm/ m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 953--955 []\T1/pcr/m/n/10 oddeven_merge_sort_range() Underfull \hbox (badness 10000) in paragraph at lines 953--955 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Overfull \hbox (61.64029pt too wide) in paragraph at lines 953--955 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode_batcher\T1/ptm/ m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 955--957 []\T1/pcr/m/n/10 OffsetCalculator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFEL De- Underfull \hbox (badness 10000) in paragraph at lines 957--959 []\T1/pcr/m/n/10 OffsetCorrection \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFEL De- Underfull \hbox (badness 10000) in paragraph at lines 965--966 []\T1/pcr/m/n/10 outputPipe() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe - Underfull \hbox (badness 10000) in paragraph at lines 969--970 []\T1/pcr/m/n/10 P2pInterface \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 972--974 []\T1/pcr/m/n/10 parabola() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 974--976 []\T1/pcr/m/n/10 ParallelProcess \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELD e- Overfull \hbox (15.04054pt too wide) in paragraph at lines 974--976 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 977--979 []\T1/pcr/m/n/10 PatternClassifier \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFE LDe- Underfull \hbox (badness 10000) in paragraph at lines 979--981 []\T1/pcr/m/n/10 patternkernels \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe - Underfull \hbox (badness 10000) in paragraph at lines 981--983 []\T1/pcr/m/n/10 PatternSelector \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 984--985 []\T1/pcr/m/n/10 pertinent_kwargs() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Overfull \hbox (12.9701pt too wide) in paragraph at lines 988--990 []\T1/pcr/m/n/10 pkernel \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.util.patte rn_kernels.patternkernels Underfull \hbox (badness 10000) in paragraph at lines 1006--1007 []\T1/pcr/m/n/10 prepare_maxwell() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule X FELDe- Underfull \hbox (badness 10000) in paragraph at lines 1007--1009 []\T1/pcr/m/n/10 print() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Overfull \hbox (15.04054pt too wide) in paragraph at lines 1007--1009 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 1009--1011 []\T1/pcr/m/n/10 printFormattedLogs() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 1011--1012 []\T1/pcr/m/n/10 printoptions() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFEL De- Underfull \hbox (badness 10000) in paragraph at lines 1012--1014 []\T1/pcr/m/n/10 process() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (75.75061pt too wide) in paragraph at lines 1012--1014 \T1/ptm/m/it/10 tAna.detectors.agipd.characterize_dynrange.AgipdDynamicRange Underfull \hbox (badness 10000) in paragraph at lines 1014--1016 []\T1/pcr/m/n/10 process() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (76.21066pt too wide) in paragraph at lines 1014--1016 \T1/ptm/m/it/10 tAna.detectors.agipd.merge_dynrange.AgipdMergeDynamicRange Underfull \hbox (badness 10000) in paragraph at lines 1016--1018 []\T1/pcr/m/n/10 process_data_point() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (66.14977pt too wide) in paragraph at lines 1016--1018 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.ProcessDrscs Underfull \hbox (badness 10000) in paragraph at lines 1018--1020 []\T1/pcr/m/n/10 ProcessDrscs \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Overfull \hbox (15.04054pt too wide) in paragraph at lines 1018--1020 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 1022--1023 []\T1/pcr/m/n/10 profilable() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe - Underfull \hbox (badness 10000) in paragraph at lines 1024--1025 []\T1/pcr/m/n/10 profilerMethod() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XF ELDe- Underfull \hbox (badness 10000) in paragraph at lines 1025--1026 []\T1/pcr/m/n/10 promote_types() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFE LDe- Underfull \hbox (badness 10000) in paragraph at lines 1029--1030 []\T1/pcr/m/n/10 put_along_axis() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XF ELDe- [179] Underfull \hbox (badness 10000) in paragraph at lines 1045--1046 []\T1/pcr/m/n/10 RankWarning() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 1048--1050 []\T1/pcr/m/n/10 ravel_multi_index() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 1050--1052 []\T1/pcr/m/n/10 read_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (74.74982pt too wide) in paragraph at lines 1050--1052 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.ParallelProcess Underfull 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at lines 1294--1295 []\T1/pcr/m/n/10 triu_indices() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFEL De- Underfull \hbox (badness 10000) in paragraph at lines 1295--1297 []\T1/pcr/m/n/10 triu_indices_from() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 1298--1299 []\T1/pcr/m/n/10 true_divide() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 1308--1310 []\T1/pcr/m/n/10 UFUNC_PYVALS_NAME() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 1310--1312 []\T1/pcr/m/n/10 undebug() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 1310--1312 \T1/ptm/m/it/10 tAna.core.mapcalculator.MapCalculator Underfull \hbox (badness 10000) in paragraph at lines 1314--1316 []\T1/pcr/m/n/10 UnitaryCalculator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFE LDe- Underfull \hbox (badness 10000) in paragraph at lines 1317--1318 []\T1/pcr/m/n/10 unravel_index() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFE LDe- Underfull \hbox (badness 10000) in paragraph at lines 1327--1329 []\T1/pcr/m/n/10 VisibleDeprecationWarning() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 5893) in paragraph at lines 1338--1340 []\T1/pcr/m/n/10 write() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.util.p2pIn terface.AsyncServer Underfull \hbox (badness 10000) in paragraph at lines 1342--1344 []\T1/pcr/m/n/10 write_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (162.59938pt too wide) in paragraph at lines 1342--1344 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRang eGatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 1344--1346 []\T1/pcr/m/n/10 write_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (139.36955pt too wide) in paragraph at lines 1344--1346 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRan geSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 1346--1348 []\T1/pcr/m/n/10 write_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (74.74982pt too wide) in paragraph at lines 1346--1348 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.ParallelProcess Underfull \hbox (badness 10000) in paragraph at lines 1348--1350 []\T1/pcr/m/n/10 write_metadata() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (162.59938pt too wide) in paragraph at lines 1348--1350 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRang eGatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 1350--1352 []\T1/pcr/m/n/10 write_metadata() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (139.36955pt too wide) in paragraph at lines 1350--1352 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRan geSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 1352--1354 []\T1/pcr/m/n/10 write_to_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (162.59938pt too wide) in paragraph at lines 1352--1354 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRang eGatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 1354--1356 []\T1/pcr/m/n/10 write_to_file() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (139.36955pt too wide) in paragraph at lines 1354--1356 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRan geSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 1356--1358 []\T1/pcr/m/n/10 WriteImage() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 1356--1358 \T1/ptm/m/it/10 tAna.detectors.edf_data.EdfFile.EdfFile Underfull \hbox (badness 10000) in paragraph at lines 1363--1364 []\T1/pcr/m/n/10 XFELDetAna.algorithms.characterize_cti Overfull \hbox (10.1225pt too wide) in 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XFELDetAna.algorithms.gpu.kernels.split_events Overfull \hbox (34.1225pt too wide) in paragraph at lines 1387--1388 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.statistics Underfull \hbox (badness 10000) in paragraph at lines 1388--1389 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.util Overfull \hbox (58.1225pt too wide) in paragraph at lines 1389--1391 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.xfelgpukernels Underfull \hbox (badness 10000) in paragraph at lines 1391--1392 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.split_events Underfull \hbox (badness 10000) in paragraph at lines 1392--1393 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.statistics Underfull \hbox (badness 10000) in paragraph at lines 1393--1394 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.util \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mod-ule\T1/ptm/m/n/10 ), Overfull \hbox (16.1225pt too wide) in paragraph at lines 1394--1395 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.xfelcalgputools Underfull \hbox (badness 10000) in paragraph at lines 1398--1399 []\T1/pcr/m/n/10 XFELDetAna.algorithms.statistics \T1/ptm/m/n/10 (\T1/ptm/m/it/ 10 mod- Underfull \hbox (badness 10000) in paragraph at lines 1400--1401 []\T1/pcr/m/n/10 XFELDetAna.algorithms.unitary \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mod-ule\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 1404--1405 []\T1/pcr/m/n/10 XFELDetAna.core.mapcalculator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mod-ule\T1/ptm/m/n/10 ), Overfull \hbox (58.1225pt too wide) in paragraph at lines 1410--1412 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.characterize_dynrange Overfull \hbox (40.1225pt too wide) in paragraph at lines 1412--1413 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms Overfull \hbox (82.1225pt too wide) in paragraph at lines 1413--1415 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms.gather Overfull \hbox (88.1225pt too wide) in paragraph at lines 1415--1417 []\T1/pcr/m/n/10 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on src.pdf (189 pages, 2525936 bytes). Transcript written on src.log. [rtd-command-info] start-time: 2019-06-12T10:55:07.443000Z, end-time: 2019-06-12T10:55:07.476000Z, duration: 0, exit-code: 0 mv -f /user_builds/pydetlib-test2/checkouts/latest/doc/_build/latex/src.pdf /user_builds/pydetlib-test2/artifacts/latest/sphinx_pdf/pydetlib-test2.pdf [rtd-command-info] start-time: 2019-06-12T10:55:09.196000Z, end-time: 2019-06-12T10:55:56.840000Z, duration: 47, exit-code: 0 python /user_builds/pydetlib-test2/envs/latest/bin/sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.8.5 mkdir: cannot create directory ‘_notebooks’: File exists [NbConvertApp] Converting notebook ../examples/gainMapStability.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in gainMapStability_files/ [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Writing 48113 bytes to ./gainMapStability.rst [NbConvertApp] Converting notebook ../examples/DataGeneratorExample.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in DataGeneratorExample_files/ [NbConvertApp] Making directory ./DataGeneratorExample_files [NbConvertApp] Writing 1984561 bytes to ./DataGeneratorExample.rst [NbConvertApp] Converting notebook ../examples/calculatorCreation.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Writing 15602 bytes to ./calculatorCreation.rst [NbConvertApp] Converting notebook ../examples/PlotExamples.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in PlotExamples_files/ [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Writing 23677 bytes to ./PlotExamples.rst Creating file ./api/XFELDetAna.rst. Creating file ./api/XFELDetAna.algorithms.rst. Creating file ./api/XFELDetAna.algorithms.cython.rst. Creating file ./api/XFELDetAna.algorithms.gpu.rst. Creating file ./api/XFELDetAna.algorithms.gpu.kernels.rst. Creating file ./api/XFELDetAna.algorithms.tests.rst. Creating file ./api/XFELDetAna.core.rst. Creating file ./api/XFELDetAna.detectors.rst. Creating file ./api/XFELDetAna.detectors.agipd.rst. Creating file ./api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.kernels.rst. Creating file ./api/XFELDetAna.detectors.agipd.tests.rst. Creating file ./api/XFELDetAna.detectors.dssc.rst. Creating file ./api/XFELDetAna.detectors.edf_data.rst. Creating file ./api/XFELDetAna.detectors.epix.rst. Creating file ./api/XFELDetAna.detectors.fastccd.rst. Creating file ./api/XFELDetAna.detectors.generator.rst. Creating file ./api/XFELDetAna.detectors.jungfrau.rst. Creating file ./api/XFELDetAna.detectors.lpd.rst. Creating file ./api/XFELDetAna.detectors.pnccd.rst. Creating file ./api/XFELDetAna.plotting.rst. Creating file ./api/XFELDetAna.util.rst. Creating file ./api/modules.rst. loading translations [en]... done WARNING: extension 'sphinx.ext.apidoc' has no setup() function; is it really a Sphinx extension module? making output directory... loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [epub]: targets for 30 source files that are out of date updating environment: [] 0 added, 28 changed, 0 removed reading sources... [ 3%] _notebooks/DataGeneratorExample reading sources... [ 7%] _notebooks/PlotExamples reading sources... [ 10%] _notebooks/calculatorCreation reading sources... [ 14%] _notebooks/gainMapStability reading sources... [ 17%] _notebooks/index reading sources... [ 21%] api/XFELDetAna reading sources... [ 25%] api/XFELDetAna.algorithms reading sources... [ 28%] api/XFELDetAna.algorithms.gpu reading sources... [ 32%] api/XFELDetAna.algorithms.gpu.kernels reading sources... [ 35%] api/XFELDetAna.algorithms.tests reading sources... [ 39%] api/XFELDetAna.core reading sources... [ 42%] api/XFELDetAna.detectors reading sources... [ 46%] api/XFELDetAna.detectors.agipd reading sources... [ 50%] api/XFELDetAna.detectors.agipd.dyrange_algorithms reading sources... [ 53%] api/XFELDetAna.detectors.agipd.gpu reading sources... [ 57%] api/XFELDetAna.detectors.agipd.gpu.kernels reading sources... [ 60%] api/XFELDetAna.detectors.agipd.tests reading sources... [ 64%] api/XFELDetAna.detectors.dssc reading sources... [ 67%] api/XFELDetAna.detectors.edf_data reading sources... [ 71%] api/XFELDetAna.detectors.epix reading sources... [ 75%] api/XFELDetAna.detectors.fastccd reading sources... [ 78%] api/XFELDetAna.detectors.generator reading sources... [ 82%] api/XFELDetAna.detectors.jungfrau reading sources... [ 85%] api/XFELDetAna.detectors.lpd reading sources... [ 89%] api/XFELDetAna.detectors.pnccd reading sources... [ 92%] api/XFELDetAna.plotting reading sources... [ 96%] api/XFELDetAna.util reading sources... [100%] api/modules /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. RemovedInSphinx20Warning) /user_builds/pydetlib-test2/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:18: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:24: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:44: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:48: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:54: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst:16: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.util.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst:45: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.util.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:7: WARNING: toctree contains reference to nonexisting document 'api/XFELDetAna.algorithms.cython' /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator:38: WARNING: Unknown interpreted text role "method". /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator.get:26: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:88: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/algorithms/gpu/correct_common_mode.py:docstring of XFELDetAna.algorithms.gpu.correct_common_mode._gpuCommonMode:11: WARNING: Unexpected indentation. 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'test_characterize_split_events' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_common_mode' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_relgain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_statistics' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_unitary' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'testing_base' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:69: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/core/reader.py:docstring of XFELDetAna.core.reader.ChunkReader.readChunks:8: WARNING: Definition list ends without a blank line; unexpected 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/user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:15: WARNING: Unexpected indentation. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected 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/user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:29: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:8: WARNING: Block quote ends without a blank 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/user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:7: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:11: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib-test2/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst:5: WARNING: duplicate label submodules, other instance in 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instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.kernels.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.kernels.rst:14: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst WARNING: autodoc: failed to import module 'test_threshold_gain' from module 'XFELDetAna.detectors.agipd.tests'; the following exception was raised: No module named 'psutil' /user_builds/pydetlib-test2/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.tests.rst:5: WARNING: duplicate label submodules, other instance in 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