Read the Docs build information Build id: 10744 Project: pydetlib Version: latest Commit: c8c0f63ac9e5e61a4b23c89baee591d86a6fd4a9 Date: 2019-06-12T07:53:16.106079Z State: finished Success: True [rtd-command-info] start-time: 2019-06-12T12:53:27.971000Z, end-time: 2019-06-12T12:53:41.542000Z, duration: 13, exit-code: 0 python3 -mvirtualenv --no-site-packages --no-download /user_builds/pydetlib/envs/latest Using base prefix '/usr' New python executable in /user_builds/pydetlib/envs/latest/bin/python3 Not overwriting existing python script /user_builds/pydetlib/envs/latest/bin/python (you must use /user_builds/pydetlib/envs/latest/bin/python3) Installing setuptools, pip, wheel...done. [rtd-command-info] start-time: 2019-06-12T12:53:41.604000Z, end-time: 2019-06-12T12:54:05.809000Z, duration: 24, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/pip install --use-wheel -U --cache-dir /user_builds/pydetlib/.cache/pip sphinx==1.3.5 Pygments==2.1.3 setuptools==20.1.1 docutils==0.12 mkdocs==0.15.0 mock==1.0.1 pillow==2.6.1 git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext sphinx-rtd-theme==0.1.9 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.5.4 recommonmark==0.1.1 Requirement already up-to-date: sphinx==1.3.5 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: Pygments==2.1.3 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages Collecting setuptools==20.1.1 Using cached https://files.pythonhosted.org/packages/e8/82/3b5455f74bf9ac0757d09c625b7741e6fc284d7519cffc3babb6c5173cf5/setuptools-20.1.1-py2.py3-none-any.whl Requirement already up-to-date: docutils==0.12 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: mkdocs==0.15.0 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: mock==1.0.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: pillow==2.6.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages Collecting readthedocs-sphinx-ext from git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext Cloning https://github.com/rtfd/readthedocs-sphinx-ext.git (to 0.6-alpha) to /tmp/pip-build-83se0b7r/readthedocs-sphinx-ext Requirement already up-to-date: sphinx-rtd-theme==0.1.9 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: alabaster!=0.7.5,<0.8,>=0.7 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: commonmark==0.5.4 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: recommonmark==0.1.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: babel!=2.0,>=1.3 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: six>=1.4 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: Jinja2>=2.3 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: snowballstemmer>=1.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: mkdocs-bootstrap>=0.1.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: livereload>=2.3.2 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: mkdocs-bootswatch>=0.1.0 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: PyYAML>=3.10 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: click>=4.0 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: Markdown>=2.3.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: tornado>=4.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: requests in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from readthedocs-sphinx-ext) Requirement already up-to-date: nilsimsa>=0.3.7 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from readthedocs-sphinx-ext) Requirement already up-to-date: pytz>=2015.7 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from babel!=2.0,>=1.3->sphinx==1.3.5) Requirement already up-to-date: MarkupSafe>=0.23 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from Jinja2>=2.3->sphinx==1.3.5) Requirement already up-to-date: backports-abc>=0.4 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from tornado>=4.1->mkdocs==0.15.0) Requirement already up-to-date: urllib3<1.25,>=1.21.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: chardet<3.1.0,>=3.0.2 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: certifi>=2017.4.17 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: idna<2.9,>=2.5 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Installing collected packages: setuptools, readthedocs-sphinx-ext Found existing installation: setuptools 28.8.0 Uninstalling setuptools-28.8.0: Successfully uninstalled setuptools-28.8.0 Found existing installation: readthedocs-sphinx-ext 0.5.4 Uninstalling readthedocs-sphinx-ext-0.5.4: Successfully uninstalled readthedocs-sphinx-ext-0.5.4 Running setup.py install for readthedocs-sphinx-ext: started Running setup.py install for readthedocs-sphinx-ext: finished with status 'done' Successfully installed readthedocs-sphinx-ext-0.5.4 setuptools-20.1.1 You are using pip version 9.0.1, however version 19.1.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2019-06-12T12:54:05.872000Z, end-time: 2019-06-12T12:54:09.900000Z, duration: 4, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/pip install --exists-action=w --cache-dir /user_builds/pydetlib/.cache/pip -rlib/docs/requirements.txt Requirement already satisfied: ipython in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 1)) Requirement already satisfied: ipyparallel in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 2)) Requirement already satisfied: jupyter in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 3)) Requirement already satisfied: matplotlib>=2.0.0 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 4)) Requirement already satisfied: numpy>=1.12 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 5)) Requirement already satisfied: tornado>=4.3 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 6)) Requirement already satisfied: pandas==0.18 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 7)) Requirement already satisfied: seaborn>=0.7.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 8)) Requirement already satisfied: brewer2mpl>=1.4 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 9)) Requirement already satisfied: dill>=0.2.5 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 10)) Requirement already satisfied: sphinxcontrib-napoleon>=0.5.2 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 11)) Requirement already satisfied: pypandoc in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 12)) Requirement already satisfied: pexpect; sys_platform != "win32" in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from ipython->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: pygments in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from ipython->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: traitlets>=4.2 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from ipython->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: pickleshare in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from ipython->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: setuptools>=18.5 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from ipython->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: prompt-toolkit<2.0.0,>=1.0.4 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from ipython->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: decorator in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from ipython->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: simplegeneric>0.8 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from ipython->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: ipykernel in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from ipyparallel->-r lib/docs/requirements.txt (line 2)) Requirement already satisfied: jupyter-client in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from ipyparallel->-r lib/docs/requirements.txt (line 2)) Requirement already satisfied: ipython-genutils in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from ipyparallel->-r lib/docs/requirements.txt (line 2)) Requirement already satisfied: python-dateutil>=2.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from ipyparallel->-r lib/docs/requirements.txt (line 2)) Requirement already satisfied: pyzmq>=13 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from ipyparallel->-r lib/docs/requirements.txt (line 2)) Requirement already satisfied: notebook in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from jupyter->-r lib/docs/requirements.txt (line 3)) Requirement already satisfied: jupyter-console in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from jupyter->-r lib/docs/requirements.txt (line 3)) Requirement already satisfied: ipywidgets in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from jupyter->-r lib/docs/requirements.txt (line 3)) Requirement already satisfied: nbconvert in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from jupyter->-r lib/docs/requirements.txt (line 3)) Requirement already satisfied: qtconsole in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from jupyter->-r lib/docs/requirements.txt (line 3)) Requirement already satisfied: pytz in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from matplotlib>=2.0.0->-r lib/docs/requirements.txt (line 4)) Requirement already satisfied: cycler>=0.10 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from matplotlib>=2.0.0->-r lib/docs/requirements.txt (line 4)) Requirement already satisfied: pyparsing!=2.0.0,!=2.0.4,!=2.1.2,!=2.1.6,>=1.5.6 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from matplotlib>=2.0.0->-r lib/docs/requirements.txt (line 4)) Requirement already satisfied: six>=1.10 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from matplotlib>=2.0.0->-r lib/docs/requirements.txt (line 4)) Requirement already satisfied: backports-abc>=0.4 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from tornado>=4.3->-r lib/docs/requirements.txt (line 6)) Requirement already satisfied: scipy in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from seaborn>=0.7.1->-r lib/docs/requirements.txt (line 8)) Requirement already satisfied: pockets>=0.3 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from sphinxcontrib-napoleon>=0.5.2->-r lib/docs/requirements.txt (line 11)) Requirement already satisfied: pip>=8.1.0 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from pypandoc->-r lib/docs/requirements.txt (line 12)) Requirement already satisfied: wheel>=0.25.0 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from pypandoc->-r lib/docs/requirements.txt (line 12)) Requirement already satisfied: ptyprocess>=0.5 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from pexpect; sys_platform != "win32"->ipython->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: wcwidth in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from prompt-toolkit<2.0.0,>=1.0.4->ipython->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: jupyter-core in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from jupyter-client->ipyparallel->-r lib/docs/requirements.txt (line 2)) Requirement already satisfied: nbformat in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from notebook->jupyter->-r lib/docs/requirements.txt (line 3)) Requirement already satisfied: terminado>=0.3.3; sys_platform != "win32" in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from notebook->jupyter->-r lib/docs/requirements.txt (line 3)) Requirement already satisfied: jinja2 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from notebook->jupyter->-r lib/docs/requirements.txt (line 3)) Requirement already satisfied: widgetsnbextension>=1.2.6 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from ipywidgets->jupyter->-r lib/docs/requirements.txt (line 3)) Requirement already satisfied: pandocfilters>=1.4.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from nbconvert->jupyter->-r lib/docs/requirements.txt (line 3)) Requirement already satisfied: testpath in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from nbconvert->jupyter->-r lib/docs/requirements.txt (line 3)) Requirement already satisfied: entrypoints>=0.2.2 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from nbconvert->jupyter->-r lib/docs/requirements.txt (line 3)) Requirement already satisfied: bleach in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from nbconvert->jupyter->-r lib/docs/requirements.txt (line 3)) Requirement already satisfied: mistune!=0.6 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from nbconvert->jupyter->-r lib/docs/requirements.txt (line 3)) Requirement already satisfied: jsonschema!=2.5.0,>=2.4 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from nbformat->notebook->jupyter->-r lib/docs/requirements.txt (line 3)) Requirement already satisfied: MarkupSafe>=0.23 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from jinja2->notebook->jupyter->-r lib/docs/requirements.txt (line 3)) Requirement already satisfied: html5lib!=0.9999,!=0.99999,<0.99999999,>=0.999 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from bleach->nbconvert->jupyter->-r lib/docs/requirements.txt (line 3)) You are using pip version 9.0.1, however version 19.1.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2019-06-12T12:54:11.361000Z, end-time: 2019-06-12T12:54:11.388000Z, duration: 0, exit-code: 0 cat conf.py # -*- coding: utf-8 -*- # # src documentation build configuration file, created by # sphinx-quickstart on Tue Sep 30 09:45:40 2014. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. import sys import os sys.path.append(os.path.abspath("../src/")) from unittest.mock import MagicMock class Mock(MagicMock): @classmethod def __getattr__(cls, name): return Mock() MOCK_MODULES = ['pycuda', 'pycuda.driver', 'pycuda.compiler', 'pycuda.autoinit', 'h5py', 'brewer2mpl', 'matplotlib', 'matplotlib.pyplot', 'matplotlib.colors', 'matplotlib.axes', 'scipy', 'scipy.stats', 'matplotlib.patches', 'scipy.ndimage', 'scipy.ndimage.filters', 'iminuit', 'mpl_toolkits', 'mpl_toolkits.mplot3d', 'mpl_toolkits.axes_grid1', 'mpl_toolkits.axes_grid1.inset_locator', 'pandoc', 'pypandoc'] sys.modules.update((mod_name, Mock()) for mod_name in MOCK_MODULES) # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. #sys.path.insert(0, os.path.abspath('.')) # -- General configuration ------------------------------------------------ # If your documentation needs a minimal Sphinx version, state it here. #needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.autodoc', 'sphinx.ext.viewcode', 'sphinxcontrib.napoleon', 'sphinx.ext.mathjax', 'sphinx.ext.intersphinx', ] # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix of source filenames. source_suffix = '.rst' # The encoding of source files. #source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'XFEL Detector Tools' copyright = u'2014, European X-ray Free Electron Laser Facility GmbH' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. version = '' # The full version, including alpha/beta/rc tags. release = '' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. #language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: #today = '' # Else, today_fmt is used as the format for a strftime call. #today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. exclude_patterns = ['_build'] # The reST default role (used for this markup: `text`) to use for all # documents. #default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. #add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). #add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. #show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. #modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. #keep_warnings = False # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # html_theme = 'sphinxdoc' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. #html_theme_options = {} # Add any paths that contain custom themes here, relative to this directory. #html_theme_path = [] # The name for this set of Sphinx documents. If None, it defaults to # " v documentation". #html_title = None # A shorter title for the navigation bar. Default is the same as html_title. #html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. #html_logo = None # The name of an image file (within the static path) to use as favicon of the # docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. #html_favicon = None # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the documentation. #html_extra_path = [] # If not '', a 'Last updated on:' timestamp is inserted at every page bottom, # using the given strftime format. #html_last_updated_fmt = '%b %d, %Y' # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. #html_use_smartypants = True # Custom sidebar templates, maps document names to template names. #html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. #html_additional_pages = {} # If false, no module index is generated. #html_domain_indices = True # If false, no index is generated. #html_use_index = True # If true, the index is split into individual pages for each letter. #html_split_index = False # If true, links to the reST sources are added to the pages. #html_show_sourcelink = True # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. #html_show_sphinx = True # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. #html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. #html_use_opensearch = '' # This is the file name suffix for HTML files (e.g. ".xhtml"). #html_file_suffix = None # Output file base name for HTML help builder. htmlhelp_basename = 'srcdoc' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). #'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). #'pointsize': '10pt', # Additional stuff for the LaTeX preamble. #'preamble': '', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ ('index', 'src.tex', u'XFEL Detector Tools', u'Steffen Hauf', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. #latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. #latex_use_parts = False # If true, show page references after internal links. #latex_show_pagerefs = False # If true, show URL addresses after external links. #latex_show_urls = False # Documents to append as an appendix to all manuals. #latex_appendices = [] # If false, no module index is generated. #latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ ('index', 'src', u'XFEL Detector Tools', [u'Author'], 1) ] # If true, show URL addresses after external links. #man_show_urls = False # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ ('index', 'src', u'XFEL Detector Tools', u'Author', 'src', 'One line description of project.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. #texinfo_appendices = [] # If false, no module index is generated. #texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. #texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. #texinfo_no_detailmenu = False # -- Options for Epub output ---------------------------------------------- # Bibliographic Dublin Core info. epub_title = u'XFEL Detector Tools' epub_author = u'Steffen Hauf' epub_publisher = u'European X-ray Free Electron Laser GmbH' epub_copyright = u'2014, Steffen Hauf' # The basename for the epub file. It defaults to the project name. #epub_basename = u'src' # The HTML theme for the epub output. Since the default themes are not optimized # for small screen space, using the same theme for HTML and epub output is # usually not wise. This defaults to 'epub', a theme designed to save visual # space. #epub_theme = 'epub' # The language of the text. It defaults to the language option # or en if the language is not set. #epub_language = '' # The scheme of the identifier. Typical schemes are ISBN or URL. #epub_scheme = '' # The unique identifier of the text. This can be a ISBN number # or the project homepage. #epub_identifier = '' # A unique identification for the text. #epub_uid = '' # A tuple containing the cover image and cover page html template filenames. #epub_cover = () # A sequence of (type, uri, title) tuples for the guide element of content.opf. #epub_guide = () # HTML files that should be inserted before the pages created by sphinx. # The format is a list of tuples containing the path and title. #epub_pre_files = [] # HTML files shat should be inserted after the pages created by sphinx. # The format is a list of tuples containing the path and title. #epub_post_files = [] # A list of files that should not be packed into the epub file. epub_exclude_files = ['search.html'] # The depth of the table of contents in toc.ncx. #epub_tocdepth = 3 # Allow duplicate toc entries. #epub_tocdup = True # Choose between 'default' and 'includehidden'. #epub_tocscope = 'default' # Fix unsupported image types using the PIL. #epub_fix_images = False # Scale large images. #epub_max_image_width = 0 # How to display URL addresses: 'footnote', 'no', or 'inline'. #epub_show_urls = 'inline' # If false, no index is generated. #epub_use_index = True autoclass_content = 'both' napoleon_google_docstring = True napoleon_numpy_docstring = True napoleon_include_private_with_doc = True napoleon_include_special_with_doc = False napoleon_use_admonition_for_examples = False napoleon_use_admonition_for_notes = False napoleon_use_admonition_for_references = False napoleon_use_ivar = False napoleon_use_param = True napoleon_use_rtype = True intersphinx_mapping = {'python': ('http://docs.python.org/2.7', None), 'numpy': ('http://docs.scipy.org/doc/numpy/', None), 'scipy': ('http://docs.scipy.org/doc/scipy/reference/', None), 'matplotlib': ('http://matplotlib.sourceforge.net/', None)} ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix else: SUFFIX = source_suffix[0] else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') html_static_path.append('/rtd_root/readthedocs/templates/sphinx/_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = False if 'html_theme' in globals(): if html_theme in ['default']: # Allow people to bail with a hack of having an html_style if not 'html_style' in globals(): import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True else: import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.org/websupport' if 'http' not in settings.MEDIA_URL: websupport2_static_url = '/static/' else: websupport2_static_url = '/media//static' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'MEDIA_URL': "/media/", 'PRODUCTION_DOMAIN': "exflrtd.desy.de", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ], 'downloads': [ ("pdf", "//exflrtd.desy.de/projects/pydetlib/downloads/pdf/latest/"), ("htmlzip", "//exflrtd.desy.de/projects/pydetlib/downloads/htmlzip/latest/"), ("epub", "//exflrtd.desy.de/projects/pydetlib/downloads/epub/latest/"), ], 'subprojects': [ ], 'slug': 'pydetlib', 'name': u'PyDetLib', 'rtd_language': u'en', 'canonical_url': 'http://exflrtd.desy.de/docs/pydetlib/en/latest/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/doc/', 'api_host': 'https://readthedocs.org', 'github_user': 'None', 'github_repo': 'None', 'github_version': 'master', 'display_github': False, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-1', 'commit': 'c8c0f63a', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): extensions.append("readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] [rtd-command-info] start-time: 2019-06-12T12:54:13Z, end-time: 2019-06-12T12:54:56.378000Z, duration: 43, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.3.5 making output directory... loading translations [en]... done loading intersphinx inventory from http://matplotlib.sourceforge.net/objects.inv... loading intersphinx inventory from http://docs.scipy.org/doc/numpy/objects.inv... loading intersphinx inventory from http://docs.python.org/2.7/objects.inv... loading intersphinx inventory from http://docs.scipy.org/doc/scipy/reference/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 33 source files that are out of date updating environment: 33 added, 0 changed, 0 removed reading sources... [ 3%] _notebooks/DataGeneratorExample reading sources... [ 6%] _notebooks/PlotExamples reading sources... [ 9%] _notebooks/calculatorCreation reading sources... [ 12%] _notebooks/gainMapStability reading sources... [ 15%] _notebooks/index reading sources... [ 18%] api/XFELDetAna Plotting not available No module named 'matplotlib.collections' reading sources... [ 21%] api/XFELDetAna.algorithms reading sources... [ 24%] api/XFELDetAna.algorithms.gpu reading sources... [ 27%] api/XFELDetAna.algorithms.gpu.kernels reading sources... [ 30%] api/XFELDetAna.algorithms.tests reading sources... [ 33%] api/XFELDetAna.core reading sources... [ 36%] api/XFELDetAna.detectors reading sources... [ 39%] api/XFELDetAna.detectors.agipd reading sources... [ 42%] api/XFELDetAna.detectors.agipd.dyrange_algorithms reading sources... [ 45%] api/XFELDetAna.detectors.agipd.gpu reading sources... [ 48%] api/XFELDetAna.detectors.agipd.gpu.kernels reading sources... [ 51%] api/XFELDetAna.detectors.agipd.tests reading sources... [ 54%] api/XFELDetAna.detectors.dssc reading sources... [ 57%] api/XFELDetAna.detectors.edf_data reading sources... [ 60%] api/XFELDetAna.detectors.epix reading sources... [ 63%] api/XFELDetAna.detectors.fastccd reading sources... [ 66%] api/XFELDetAna.detectors.generator reading sources... [ 69%] api/XFELDetAna.detectors.jungfrau reading sources... [ 72%] api/XFELDetAna.detectors.lpd reading sources... [ 75%] api/XFELDetAna.detectors.pnccd reading sources... [ 78%] api/XFELDetAna.plotting reading sources... [ 81%] api/XFELDetAna.util reading sources... [ 84%] api/modules reading sources... [ 87%] examples/DataGeneratorExample reading sources... [ 90%] examples/PlotExamples reading sources... [ 93%] examples/gainMapStability reading sources... [ 96%] index reading sources... [100%] installation /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:18: ERROR: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:24: ERROR: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:44: ERROR: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:48: ERROR: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:54: ERROR: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst:28: WARNING: autodoc: failed to import module 'XFELDetAna.xfelpycaltools'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/xfelpycaltools.py", line 68, in from .algorithms.characterize_cti import CTICalculator File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_cti.py", line 18, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:7: WARNING: toctree contains reference to nonexisting document 'api/XFELDetAna.algorithms.cython' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:16: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.characterize_cti'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_cti.py", line 18, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:21: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.characterize_noise'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_noise.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:26: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.characterize_relgain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_relgain.py", line 14, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:36: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.correct_cti'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correct_cti.py", line 10, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:41: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.correct_offset'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correct_offset.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:46: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.correct_relgain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correct_relgain.py", line 15, in from XFELDetAna.plotting.multidim import deviationPlot3D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:51: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.correction'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator:38: ERROR: Unknown interpreted text role "method". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator.get:26: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:71: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.statistics'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/statistics.py", line 14, in from .characterize_noise import (NoiseCalculator, _noiseCalChunk, File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_noise.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/gpu/correct_common_mode.py:docstring of XFELDetAna.algorithms.gpu.correct_common_mode._gpuCommonMode:11: ERROR: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_cti'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_cti.py", line 5, in from XFELDetAna.algorithms.characterize_cti import CTICalculator File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_cti.py", line 18, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:12: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_noise'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_noise.py", line 5, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:17: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_offset'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_offset.py", line 5, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:22: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_rel_gain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_rel_gain.py", line 5, in from XFELDetAna.algorithms.characterize_relgain import GainMapCalculator File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_relgain.py", line 14, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:27: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_split_events'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_split_events.py", line 6, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:32: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_correct_common_mode'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_correct_common_mode.py", line 6, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:37: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_correct_cti'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_correct_cti.py", line 5, in from XFELDetAna.algorithms.correct_cti import CTICorrection File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correct_cti.py", line 10, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:42: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_correct_offset'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_correct_offset.py", line 6, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:47: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_correct_relgain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_correct_relgain.py", line 5, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:52: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_statistics'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_statistics.py", line 6, in from XFELDetAna.algorithms.statistics import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/statistics.py", line 14, in from .characterize_noise import (NoiseCalculator, _noiseCalChunk, File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_noise.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:57: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_unitary'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_unitary.py", line 7, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:62: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.testing_base'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/core/reader.py:docstring of XFELDetAna.core.reader.ChunkReader.readChunks:8: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:16: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.agipd.characterize_dynrange'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/characterize_dynrange.py", line 18, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:31: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.agipd.threshold_gain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/threshold_gain.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:5: SEVERE: Unexpected section title or transition. ____________ /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:15: ERROR: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:29: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:5: SEVERE: Unexpected section title or transition. ____________ /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:15: ERROR: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:29: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:7: ERROR: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:11: ERROR: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: ERROR: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: ERROR: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:25: ERROR: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:25: ERROR: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:7: ERROR: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:11: ERROR: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: ERROR: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: ERROR: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:25: ERROR: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:25: ERROR: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.tests.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.agipd.tests.test_threshold_gain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/tests/test_threshold_gain.py", line 6, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile:22: ERROR: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile:23: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile:31: ERROR: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile:44: ERROR: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile:50: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.GetData:4: ERROR: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.GetData:10: ERROR: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.GetData:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:3: ERROR: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:5: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:31: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.jungfrau.characterize_jfgain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/characterize_jfgain.py", line 14, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst:12: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.jungfrau.fitFuncs'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/fitFuncs.py", line 2, in from iminuit.util import make_func_code ImportError: No module named 'iminuit.util' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/jf_chunk_reader.py:docstring of XFELDetAna.detectors.jungfrau.jf_chunk_reader.JFChunkReader.readChunks:10: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.plotting.heatmap'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/heatmap.py", line 273, in import matplotlib.collections as mcoll ImportError: No module named 'matplotlib.collections' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst:17: WARNING: autodoc: failed to import module 'XFELDetAna.plotting.multidim'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.util.cluster'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:17: WARNING: __all__ should be a list of strings, not .wrapped at 0x7f9e76014400> (in module XFELDetAna.util.knumpy) -- ignoring __all__ /user_builds/pydetlib/checkouts/latest/lib/docs/examples/DataGeneratorExample.rst:161: WARNING: Inline emphasis start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/docs/index.rst:7: WARNING: Title underline too short. Welcome to XFEL Detector Tools' documentation! =============================== looking for now-outdated files... none found pickling environment... done checking consistency... /user_builds/pydetlib/checkouts/latest/lib/docs/examples/DataGeneratorExample.rst:: WARNING: document isn't included in any toctree /user_builds/pydetlib/checkouts/latest/lib/docs/examples/PlotExamples.rst:: WARNING: document isn't included in any toctree /user_builds/pydetlib/checkouts/latest/lib/docs/examples/gainMapStability.rst:: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 3%] _notebooks/DataGeneratorExample writing output... [ 6%] _notebooks/PlotExamples writing output... [ 9%] _notebooks/calculatorCreation writing output... [ 12%] _notebooks/gainMapStability writing output... [ 15%] _notebooks/index writing output... [ 18%] api/XFELDetAna writing output... [ 21%] api/XFELDetAna.algorithms writing output... [ 24%] api/XFELDetAna.algorithms.gpu writing output... [ 27%] api/XFELDetAna.algorithms.gpu.kernels writing output... [ 30%] api/XFELDetAna.algorithms.tests writing output... [ 33%] api/XFELDetAna.core writing output... [ 36%] api/XFELDetAna.detectors writing output... [ 39%] api/XFELDetAna.detectors.agipd writing output... [ 42%] api/XFELDetAna.detectors.agipd.dyrange_algorithms writing output... [ 45%] api/XFELDetAna.detectors.agipd.gpu writing output... [ 48%] api/XFELDetAna.detectors.agipd.gpu.kernels writing output... [ 51%] api/XFELDetAna.detectors.agipd.tests writing output... [ 54%] api/XFELDetAna.detectors.dssc writing output... [ 57%] api/XFELDetAna.detectors.edf_data writing output... [ 60%] api/XFELDetAna.detectors.epix writing output... [ 63%] api/XFELDetAna.detectors.fastccd writing output... [ 66%] api/XFELDetAna.detectors.generator writing output... [ 69%] api/XFELDetAna.detectors.jungfrau writing output... [ 72%] api/XFELDetAna.detectors.lpd writing output... [ 75%] api/XFELDetAna.detectors.pnccd writing output... [ 78%] api/XFELDetAna.plotting writing output... [ 81%] api/XFELDetAna.util writing output... [ 84%] api/modules writing output... [ 87%] examples/DataGeneratorExample writing output... [ 90%] examples/PlotExamples writing output... [ 93%] examples/gainMapStability writing output... [ 96%] index writing output... [100%] installation generating indices... genindex py-modindex highlighting module code... [ 2%] XFELDetAna.algorithms.gpu.calc_offset_and_noise highlighting module code... [ 4%] XFELDetAna.algorithms.gpu.kernels.correct_common_mode_batcher highlighting module code... [ 6%] XFELDetAna.plotting.histogram highlighting module code... [ 9%] XFELDetAna.detectors.pnccd.reader highlighting module code... [ 11%] XFELDetAna.detectors.fastccd.readerh5 highlighting module code... [ 13%] XFELDetAna.core.decorators highlighting module code... [ 15%] XFELDetAna.core.reader highlighting module code... [ 18%] XFELDetAna.detectors.lpd.reader highlighting module code... [ 20%] XFELDetAna.algorithms.histogram highlighting module code... [ 22%] XFELDetAna.plotting.simpleplot highlighting module code... [ 25%] XFELDetAna.detectors.jungfrau.util highlighting module code... [ 27%] XFELDetAna.detectors.edf_data.reader highlighting module code... [ 29%] XFELDetAna.detectors.jungfrau.readerPSI highlighting module code... [ 31%] XFELDetAna.detectors.agipd.merge_dynrange highlighting module code... [ 34%] XFELDetAna.detectors.jungfrau.jf_chunk_reader highlighting module code... [ 36%] XFELDetAna.algorithms.util highlighting module code... [ 38%] numpy.ma.core highlighting module code... [ 40%] XFELDetAna.util.knumpy highlighting module code... [ 43%] XFELDetAna.detectors.generator.reader highlighting module code... [ 45%] XFELDetAna.detectors.agipd.dyrange_algorithms.gather highlighting module code... [ 47%] XFELDetAna.detectors.edf_data.loadedf highlighting module code... [ 50%] XFELDetAna.algorithms.selection highlighting module code... [ 52%] XFELDetAna.detectors.jungfrau.reader highlighting module code... [ 54%] XFELDetAna.detectors.epix.reader highlighting module code... [ 56%] XFELDetAna.algorithms.split_event highlighting module code... [ 59%] XFELDetAna.util.env highlighting module code... [ 61%] XFELDetAna.algorithms.gpu.kernels.statistics highlighting module code... [ 63%] XFELDetAna.plotting.util highlighting module code... [ 65%] XFELDetAna.util.pattern_kernels highlighting module code... [ 68%] XFELDetAna.core.mapcalculator highlighting module code... [ 70%] XFELDetAna.core.profiler highlighting module code... [ 72%] XFELDetAna.util.p2pInterface highlighting module code... [ 75%] XFELDetAna.core.util highlighting module code... [ 77%] XFELDetAna.detectors.edf_data.EdfFile highlighting module code... [ 79%] XFELDetAna.detectors.agipd.dyrange_algorithms.process highlighting module code... [ 81%] XFELDetAna.detectors.agipd.dyrange_algorithms.util highlighting module code... [ 84%] XFELDetAna.algorithms.gpu.correct_common_mode highlighting module code... [ 86%] XFELDetAna.detectors.pnccd.frm6reader highlighting module code... [ 88%] XFELDetAna.algorithms.unitary highlighting module code... [ 90%] numpy highlighting module code... [ 93%] XFELDetAna.detectors.dssc.reader highlighting module code... [ 95%] XFELDetAna.detectors.fastccd.reader highlighting module code... [ 97%] XFELDetAna.algorithms.correct_common_mode highlighting module code... [100%] XFELDetAna.detectors.agipd.reader writing additional pages... search copying images... [ 1%] examples/DataGeneratorExample_files/DataGeneratorExample_23_0.png copying images... [ 2%] examples/DataGeneratorExample_files/DataGeneratorExample_21_0.png copying images... [ 3%] examples/PlotExamples_files/PlotExamples_24_0.png copying images... [ 4%] examples/PlotExamples_files/PlotExamples_2_0.png copying images... [ 5%] examples/PlotExamples_files/PlotExamples_8_1.png copying images... [ 6%] examples/DataGeneratorExample_files/DataGeneratorExample_23_1.png copying images... [ 7%] _notebooks/PlotExamples_files/PlotExamples_8_1.png copying images... [ 8%] _notebooks/gainMapStability_files/gainMapStability_12_6.png copying images... [ 9%] _notebooks/PlotExamples_files/PlotExamples_10_0.png copying images... [ 10%] _notebooks/PlotExamples_files/PlotExamples_28_0.png copying images... [ 11%] _notebooks/PlotExamples_files/PlotExamples_12_0.png copying images... [ 12%] _notebooks/gainMapStability_files/gainMapStability_12_10.png copying images... [ 13%] _notebooks/PlotExamples_files/PlotExamples_10_1.png copying images... [ 15%] examples/PlotExamples_files/PlotExamples_22_0.png copying images... [ 16%] examples/DataGeneratorExample_files/DataGeneratorExample_39_0.png copying images... [ 17%] _notebooks/PlotExamples_files/PlotExamples_22_1.png copying images... [ 18%] _notebooks/gainMapStability_files/gainMapStability_12_1.png copying images... [ 19%] _notebooks/gainMapStability_files/gainMapStability_12_7.png copying images... [ 20%] _notebooks/PlotExamples_files/PlotExamples_36_0.png copying images... [ 21%] examples/DataGeneratorExample_files/DataGeneratorExample_41_1.png copying images... [ 22%] _notebooks/gainMapStability_files/gainMapStability_9_0.png copying images... [ 23%] _notebooks/gainMapStability_files/gainMapStability_12_8.png copying images... [ 24%] _notebooks/gainMapStability_files/gainMapStability_12_4.png copying images... [ 25%] _notebooks/PlotExamples_files/PlotExamples_4_1.png copying images... [ 26%] examples/PlotExamples_files/PlotExamples_6_0.png copying images... [ 27%] examples/PlotExamples_files/PlotExamples_16_0.png copying images... [ 29%] examples/gainMapStability_files/gainMapStability_6_4.png copying images... [ 30%] examples/PlotExamples_files/PlotExamples_14_1.png copying images... [ 31%] _notebooks/PlotExamples_files/PlotExamples_24_0.png copying images... [ 32%] _notebooks/gainMapStability_files/gainMapStability_11_0.png copying images... [ 33%] examples/DataGeneratorExample_files/DataGeneratorExample_21_1.png copying images... [ 34%] examples/DataGeneratorExample_files/DataGeneratorExample_25_0.png copying images... [ 35%] _notebooks/PlotExamples_files/PlotExamples_40_0.png copying images... [ 36%] examples/PlotExamples_files/PlotExamples_34_0.png copying images... [ 37%] examples/PlotExamples_files/PlotExamples_32_0.png copying images... [ 38%] examples/gainMapStability_files/gainMapStability_4_0.png copying images... [ 39%] examples/PlotExamples_files/PlotExamples_8_0.png copying images... [ 40%] _notebooks/PlotExamples_files/PlotExamples_26_0.png copying images... [ 41%] _notebooks/gainMapStability_files/gainMapStability_12_5.png copying images... [ 43%] _notebooks/PlotExamples_files/PlotExamples_16_0.png copying images... [ 44%] examples/DataGeneratorExample_files/DataGeneratorExample_14_0.png copying images... [ 45%] _notebooks/gainMapStability_files/gainMapStability_12_2.png copying images... [ 46%] _notebooks/PlotExamples_files/PlotExamples_42_0.png copying images... [ 47%] examples/PlotExamples_files/PlotExamples_42_0.png copying images... [ 48%] _notebooks/gainMapStability_files/gainMapStability_13_0.png copying images... [ 49%] examples/PlotExamples_files/PlotExamples_4_0.png copying images... [ 50%] _notebooks/DataGeneratorExample_files/DataGeneratorExample_17_1.png copying images... [ 51%] _notebooks/PlotExamples_files/PlotExamples_14_1.png copying images... [ 52%] examples/PlotExamples_files/PlotExamples_36_0.png copying images... [ 53%] examples/PlotExamples_files/PlotExamples_26_0.png copying images... [ 54%] _notebooks/gainMapStability_files/gainMapStability_12_3.png copying images... [ 55%] _notebooks/PlotExamples_files/PlotExamples_6_1.png copying images... [ 56%] examples/gainMapStability_files/gainMapStability_6_1.png copying images... [ 58%] examples/DataGeneratorExample_files/DataGeneratorExample_27_0.png copying images... [ 59%] _notebooks/PlotExamples_files/PlotExamples_8_2.png copying images... [ 60%] _notebooks/PlotExamples_files/PlotExamples_2_0.png copying images... [ 61%] examples/PlotExamples_files/PlotExamples_6_1.png copying images... [ 62%] _notebooks/gainMapStability_files/gainMapStability_16_0.png copying images... [ 63%] examples/DataGeneratorExample_files/DataGeneratorExample_37_1.png copying images... [ 64%] _notebooks/PlotExamples_files/PlotExamples_34_0.png copying images... [ 65%] _notebooks/gainMapStability_files/gainMapStability_12_9.png copying images... [ 66%] _notebooks/gainMapStability_files/gainMapStability_10_0.png copying images... [ 67%] examples/PlotExamples_files/PlotExamples_4_1.png copying images... [ 68%] examples/DataGeneratorExample_files/DataGeneratorExample_46_0.png copying images... [ 69%] _notebooks/PlotExamples_files/PlotExamples_32_0.png copying images... [ 70%] examples/gainMapStability_files/gainMapStability_6_3.png copying images... [ 72%] examples/DataGeneratorExample_files/DataGeneratorExample_25_1.png copying images... [ 73%] _notebooks/PlotExamples_files/PlotExamples_8_0.png copying images... [ 74%] examples/PlotExamples_files/PlotExamples_38_0.png copying images... [ 75%] examples/PlotExamples_files/PlotExamples_12_0.png copying images... [ 76%] _notebooks/PlotExamples_files/PlotExamples_22_2.png copying images... [ 77%] examples/PlotExamples_files/PlotExamples_10_0.png copying images... [ 78%] _notebooks/PlotExamples_files/PlotExamples_30_0.png copying images... [ 79%] _notebooks/PlotExamples_files/PlotExamples_14_0.png copying images... [ 80%] examples/gainMapStability_files/gainMapStability_6_0.png copying images... [ 81%] examples/PlotExamples_files/PlotExamples_30_0.png copying images... [ 82%] _notebooks/PlotExamples_files/PlotExamples_18_0.png copying images... [ 83%] examples/DataGeneratorExample_files/DataGeneratorExample_41_0.png copying images... [ 84%] _notebooks/gainMapStability_files/gainMapStability_4_0.png copying images... [ 86%] _notebooks/PlotExamples_files/PlotExamples_6_0.png copying images... [ 87%] examples/PlotExamples_files/PlotExamples_28_0.png copying images... [ 88%] examples/PlotExamples_files/PlotExamples_10_1.png copying images... [ 89%] examples/DataGeneratorExample_files/DataGeneratorExample_31_0.png copying images... [ 90%] _notebooks/PlotExamples_files/PlotExamples_38_0.png copying images... [ 91%] _notebooks/PlotExamples_files/PlotExamples_20_0.png copying images... [ 92%] examples/PlotExamples_files/PlotExamples_20_0.png copying images... [ 93%] examples/gainMapStability_files/gainMapStability_6_2.png copying images... [ 94%] examples/PlotExamples_files/PlotExamples_8_2.png copying images... [ 95%] examples/PlotExamples_files/PlotExamples_18_0.png copying images... [ 96%] examples/PlotExamples_files/PlotExamples_40_0.png copying images... [ 97%] examples/PlotExamples_files/PlotExamples_14_0.png copying images... [ 98%] examples/PlotExamples_files/PlotExamples_22_1.png copying images... [100%] _notebooks/PlotExamples_files/PlotExamples_4_0.png copying static files... WARNING: html_static_path entry '/user_builds/pydetlib/checkouts/latest/lib/docs/_static' does not exist WARNING: html_static_path entry '/rtd_root/readthedocs/templates/sphinx/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 98 warnings. Copying readthedocs-dynamic-include.js_t... done Copying readthedocs-data.js_t... done Copying searchtools.js_t... done [rtd-command-info] start-time: 2019-06-12T12:55:13.514000Z, end-time: 2019-06-12T12:55:36.156000Z, duration: 22, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/sphinx-build -T -b json -d _build/doctrees-json -D language=en . _build/json Running Sphinx v1.3.5 making output directory... loading translations [en]... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [json]: targets for 33 source files that are out of date updating environment: 0 added, 8 changed, 0 removed reading sources... [ 12%] api/XFELDetAna Plotting not available No module named 'matplotlib.collections' reading sources... [ 25%] api/XFELDetAna.algorithms reading sources... [ 37%] api/XFELDetAna.algorithms.tests reading sources... [ 50%] api/XFELDetAna.detectors.agipd reading sources... [ 62%] api/XFELDetAna.detectors.agipd.tests reading sources... [ 75%] api/XFELDetAna.detectors.jungfrau reading sources... [ 87%] api/XFELDetAna.plotting reading sources... [100%] api/XFELDetAna.util /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst:28: WARNING: autodoc: failed to import module 'XFELDetAna.xfelpycaltools'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/xfelpycaltools.py", line 68, in from .algorithms.characterize_cti import CTICalculator File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_cti.py", line 18, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:7: WARNING: toctree contains reference to nonexisting document 'api/XFELDetAna.algorithms.cython' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:16: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.characterize_cti'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_cti.py", line 18, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:21: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.characterize_noise'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_noise.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:26: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.characterize_relgain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_relgain.py", line 14, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:36: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.correct_cti'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correct_cti.py", line 10, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:41: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.correct_offset'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correct_offset.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:46: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.correct_relgain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correct_relgain.py", line 15, in from XFELDetAna.plotting.multidim import deviationPlot3D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:51: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.correction'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator:38: ERROR: Unknown interpreted text role "method". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator.get:26: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:71: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.statistics'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/statistics.py", line 14, in from .characterize_noise import (NoiseCalculator, _noiseCalChunk, File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_noise.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_cti'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_cti.py", line 5, in from XFELDetAna.algorithms.characterize_cti import CTICalculator File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_cti.py", line 18, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:12: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_noise'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_noise.py", line 5, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:17: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_offset'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_offset.py", line 5, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:22: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_rel_gain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_rel_gain.py", line 5, in from XFELDetAna.algorithms.characterize_relgain import GainMapCalculator File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_relgain.py", line 14, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:27: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_split_events'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_split_events.py", line 6, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:32: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_correct_common_mode'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_correct_common_mode.py", line 6, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:37: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_correct_cti'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_correct_cti.py", line 5, in from XFELDetAna.algorithms.correct_cti import CTICorrection File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correct_cti.py", line 10, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:42: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_correct_offset'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_correct_offset.py", line 6, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:47: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_correct_relgain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_correct_relgain.py", line 5, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:52: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_statistics'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_statistics.py", line 6, in from XFELDetAna.algorithms.statistics import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/statistics.py", line 14, in from .characterize_noise import (NoiseCalculator, _noiseCalChunk, File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_noise.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:57: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_unitary'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_unitary.py", line 7, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:62: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.testing_base'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:16: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.agipd.characterize_dynrange'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/characterize_dynrange.py", line 18, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:31: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.agipd.threshold_gain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/threshold_gain.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.tests.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.agipd.tests.test_threshold_gain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/tests/test_threshold_gain.py", line 6, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.jungfrau.characterize_jfgain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/characterize_jfgain.py", line 14, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst:12: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.jungfrau.fitFuncs'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/fitFuncs.py", line 2, in from iminuit.util import make_func_code ImportError: No module named 'iminuit.util' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/jf_chunk_reader.py:docstring of XFELDetAna.detectors.jungfrau.jf_chunk_reader.JFChunkReader.readChunks:10: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.plotting.heatmap'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/heatmap.py", line 273, in import matplotlib.collections as mcoll ImportError: No module named 'matplotlib.collections' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst:17: WARNING: autodoc: failed to import module 'XFELDetAna.plotting.multidim'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.util.cluster'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:17: WARNING: __all__ should be a list of strings, not .wrapped at 0x7ff4620cbea0> (in module XFELDetAna.util.knumpy) -- ignoring __all__ looking for now-outdated files... none found pickling environment... done checking consistency... /user_builds/pydetlib/checkouts/latest/lib/docs/examples/DataGeneratorExample.rst:: WARNING: document isn't included in any toctree /user_builds/pydetlib/checkouts/latest/lib/docs/examples/PlotExamples.rst:: WARNING: document isn't included in any toctree /user_builds/pydetlib/checkouts/latest/lib/docs/examples/gainMapStability.rst:: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 3%] _notebooks/DataGeneratorExample writing output... [ 6%] _notebooks/PlotExamples writing output... [ 9%] _notebooks/calculatorCreation writing output... [ 12%] _notebooks/gainMapStability writing output... [ 15%] _notebooks/index writing output... [ 18%] api/XFELDetAna writing output... [ 21%] api/XFELDetAna.algorithms writing output... [ 24%] api/XFELDetAna.algorithms.gpu writing output... [ 27%] api/XFELDetAna.algorithms.gpu.kernels writing output... [ 30%] api/XFELDetAna.algorithms.tests writing output... [ 33%] api/XFELDetAna.core writing output... [ 36%] api/XFELDetAna.detectors writing output... [ 39%] api/XFELDetAna.detectors.agipd writing output... [ 42%] api/XFELDetAna.detectors.agipd.dyrange_algorithms writing output... [ 45%] api/XFELDetAna.detectors.agipd.gpu writing output... [ 48%] api/XFELDetAna.detectors.agipd.gpu.kernels writing output... [ 51%] api/XFELDetAna.detectors.agipd.tests writing output... [ 54%] api/XFELDetAna.detectors.dssc writing output... [ 57%] api/XFELDetAna.detectors.edf_data writing output... [ 60%] api/XFELDetAna.detectors.epix writing output... [ 63%] api/XFELDetAna.detectors.fastccd writing output... [ 66%] api/XFELDetAna.detectors.generator writing output... [ 69%] api/XFELDetAna.detectors.jungfrau writing output... [ 72%] api/XFELDetAna.detectors.lpd writing output... [ 75%] api/XFELDetAna.detectors.pnccd writing output... [ 78%] api/XFELDetAna.plotting writing output... [ 81%] api/XFELDetAna.util writing output... [ 84%] api/modules writing output... [ 87%] examples/DataGeneratorExample writing output... [ 90%] examples/PlotExamples writing output... [ 93%] examples/gainMapStability writing output... [ 96%] index writing output... [100%] installation generating indices... genindex py-modindex highlighting module code... [ 2%] XFELDetAna.detectors.generator.reader highlighting module code... [ 4%] numpy highlighting module code... [ 6%] XFELDetAna.detectors.edf_data.EdfFile highlighting module code... [ 9%] XFELDetAna.plotting.util highlighting module code... [ 11%] XFELDetAna.detectors.dssc.reader highlighting module code... [ 13%] XFELDetAna.detectors.edf_data.loadedf highlighting module code... [ 15%] XFELDetAna.plotting.histogram highlighting module code... [ 18%] XFELDetAna.detectors.jungfrau.util highlighting module code... [ 20%] XFELDetAna.core.mapcalculator highlighting module code... [ 22%] XFELDetAna.detectors.jungfrau.jf_chunk_reader highlighting module code... [ 25%] XFELDetAna.plotting.simpleplot highlighting module code... [ 27%] XFELDetAna.detectors.jungfrau.readerPSI highlighting module code... [ 29%] XFELDetAna.detectors.lpd.reader highlighting module code... [ 31%] XFELDetAna.core.decorators highlighting module code... [ 34%] XFELDetAna.core.reader highlighting module code... [ 36%] XFELDetAna.algorithms.histogram highlighting module code... [ 38%] XFELDetAna.detectors.agipd.dyrange_algorithms.process highlighting module code... [ 40%] XFELDetAna.detectors.jungfrau.reader highlighting module code... [ 43%] XFELDetAna.algorithms.gpu.kernels.statistics highlighting module code... [ 45%] XFELDetAna.core.profiler highlighting module code... [ 47%] numpy.ma.core highlighting module code... [ 50%] XFELDetAna.detectors.agipd.reader highlighting module code... [ 52%] XFELDetAna.algorithms.selection highlighting module code... [ 54%] XFELDetAna.algorithms.gpu.correct_common_mode highlighting module code... [ 56%] XFELDetAna.util.knumpy highlighting module code... [ 59%] XFELDetAna.detectors.fastccd.readerh5 highlighting module code... [ 61%] XFELDetAna.detectors.epix.reader highlighting module code... [ 63%] XFELDetAna.detectors.edf_data.reader highlighting module code... [ 65%] XFELDetAna.detectors.fastccd.reader highlighting module code... [ 68%] XFELDetAna.algorithms.unitary highlighting module code... [ 70%] XFELDetAna.algorithms.util highlighting module code... [ 72%] XFELDetAna.algorithms.gpu.kernels.correct_common_mode_batcher highlighting module code... [ 75%] XFELDetAna.algorithms.split_event highlighting module code... [ 77%] XFELDetAna.detectors.pnccd.frm6reader highlighting module code... [ 79%] XFELDetAna.algorithms.gpu.calc_offset_and_noise highlighting module code... [ 81%] XFELDetAna.util.p2pInterface highlighting module code... [ 84%] XFELDetAna.detectors.pnccd.reader highlighting module code... [ 86%] XFELDetAna.algorithms.correct_common_mode highlighting module code... [ 88%] XFELDetAna.util.env highlighting module code... [ 90%] XFELDetAna.detectors.agipd.dyrange_algorithms.util highlighting module code... [ 93%] XFELDetAna.core.util highlighting module code... [ 95%] XFELDetAna.detectors.agipd.merge_dynrange highlighting module code... [ 97%] XFELDetAna.util.pattern_kernels highlighting module code... [100%] XFELDetAna.detectors.agipd.dyrange_algorithms.gather writing additional pages... search copying images... [ 1%] _notebooks/gainMapStability_files/gainMapStability_12_3.png copying images... [ 2%] _notebooks/PlotExamples_files/PlotExamples_10_0.png copying images... [ 3%] _notebooks/PlotExamples_files/PlotExamples_6_0.png copying images... [ 4%] _notebooks/PlotExamples_files/PlotExamples_28_0.png copying images... [ 5%] _notebooks/PlotExamples_files/PlotExamples_8_1.png copying images... [ 6%] _notebooks/gainMapStability_files/gainMapStability_12_2.png copying images... [ 7%] examples/PlotExamples_files/PlotExamples_22_1.png copying images... [ 8%] examples/gainMapStability_files/gainMapStability_6_4.png copying images... [ 9%] _notebooks/PlotExamples_files/PlotExamples_36_0.png copying images... [ 10%] _notebooks/PlotExamples_files/PlotExamples_8_2.png copying images... [ 11%] _notebooks/PlotExamples_files/PlotExamples_12_0.png copying images... [ 12%] examples/PlotExamples_files/PlotExamples_40_0.png copying images... [ 13%] examples/PlotExamples_files/PlotExamples_4_1.png copying images... [ 15%] examples/DataGeneratorExample_files/DataGeneratorExample_21_1.png copying images... [ 16%] _notebooks/PlotExamples_files/PlotExamples_14_1.png copying images... [ 17%] examples/PlotExamples_files/PlotExamples_14_0.png copying images... [ 18%] _notebooks/PlotExamples_files/PlotExamples_16_0.png copying images... [ 19%] examples/DataGeneratorExample_files/DataGeneratorExample_21_0.png copying images... [ 20%] examples/PlotExamples_files/PlotExamples_16_0.png copying images... [ 21%] _notebooks/PlotExamples_files/PlotExamples_4_1.png copying images... [ 22%] examples/PlotExamples_files/PlotExamples_42_0.png copying images... [ 23%] _notebooks/gainMapStability_files/gainMapStability_12_10.png copying images... [ 24%] examples/PlotExamples_files/PlotExamples_36_0.png copying images... [ 25%] examples/PlotExamples_files/PlotExamples_10_0.png copying images... [ 26%] _notebooks/PlotExamples_files/PlotExamples_32_0.png copying images... [ 27%] examples/PlotExamples_files/PlotExamples_8_0.png copying images... [ 29%] examples/PlotExamples_files/PlotExamples_26_0.png copying images... [ 30%] examples/DataGeneratorExample_files/DataGeneratorExample_39_0.png copying images... [ 31%] examples/PlotExamples_files/PlotExamples_8_1.png copying images... [ 32%] _notebooks/PlotExamples_files/PlotExamples_42_0.png copying images... [ 33%] examples/PlotExamples_files/PlotExamples_10_1.png copying images... [ 34%] _notebooks/PlotExamples_files/PlotExamples_38_0.png copying images... [ 35%] examples/DataGeneratorExample_files/DataGeneratorExample_23_0.png copying images... [ 36%] _notebooks/gainMapStability_files/gainMapStability_12_7.png copying images... [ 37%] examples/PlotExamples_files/PlotExamples_24_0.png copying images... [ 38%] examples/gainMapStability_files/gainMapStability_6_0.png copying images... [ 39%] _notebooks/PlotExamples_files/PlotExamples_22_2.png copying images... [ 40%] examples/PlotExamples_files/PlotExamples_14_1.png copying images... [ 41%] _notebooks/PlotExamples_files/PlotExamples_20_0.png copying images... [ 43%] _notebooks/gainMapStability_files/gainMapStability_4_0.png copying images... [ 44%] _notebooks/gainMapStability_files/gainMapStability_10_0.png copying images... [ 45%] examples/DataGeneratorExample_files/DataGeneratorExample_25_1.png copying images... [ 46%] _notebooks/gainMapStability_files/gainMapStability_9_0.png copying images... [ 47%] _notebooks/PlotExamples_files/PlotExamples_34_0.png copying images... [ 48%] _notebooks/PlotExamples_files/PlotExamples_30_0.png copying images... [ 49%] examples/DataGeneratorExample_files/DataGeneratorExample_41_1.png copying images... [ 50%] _notebooks/gainMapStability_files/gainMapStability_16_0.png copying images... [ 51%] examples/PlotExamples_files/PlotExamples_20_0.png copying images... [ 52%] _notebooks/gainMapStability_files/gainMapStability_12_6.png copying images... [ 53%] examples/PlotExamples_files/PlotExamples_12_0.png copying images... [ 54%] _notebooks/gainMapStability_files/gainMapStability_12_1.png copying images... [ 55%] examples/PlotExamples_files/PlotExamples_34_0.png copying images... [ 56%] _notebooks/PlotExamples_files/PlotExamples_40_0.png copying images... [ 58%] _notebooks/gainMapStability_files/gainMapStability_12_5.png copying images... [ 59%] examples/PlotExamples_files/PlotExamples_38_0.png copying images... [ 60%] examples/PlotExamples_files/PlotExamples_6_0.png copying images... [ 61%] _notebooks/gainMapStability_files/gainMapStability_12_8.png copying images... [ 62%] examples/PlotExamples_files/PlotExamples_18_0.png copying images... [ 63%] examples/PlotExamples_files/PlotExamples_22_0.png copying images... [ 64%] _notebooks/DataGeneratorExample_files/DataGeneratorExample_17_1.png copying images... [ 65%] _notebooks/PlotExamples_files/PlotExamples_26_0.png copying images... [ 66%] _notebooks/gainMapStability_files/gainMapStability_13_0.png copying images... [ 67%] examples/PlotExamples_files/PlotExamples_32_0.png copying images... [ 68%] _notebooks/gainMapStability_files/gainMapStability_12_9.png copying images... [ 69%] examples/DataGeneratorExample_files/DataGeneratorExample_41_0.png copying images... [ 70%] _notebooks/PlotExamples_files/PlotExamples_8_0.png copying images... [ 72%] _notebooks/PlotExamples_files/PlotExamples_2_0.png copying images... [ 73%] _notebooks/gainMapStability_files/gainMapStability_11_0.png copying images... [ 74%] examples/PlotExamples_files/PlotExamples_2_0.png copying images... [ 75%] examples/PlotExamples_files/PlotExamples_8_2.png copying images... [ 76%] _notebooks/PlotExamples_files/PlotExamples_14_0.png copying images... [ 77%] examples/PlotExamples_files/PlotExamples_4_0.png copying images... [ 78%] examples/gainMapStability_files/gainMapStability_6_1.png copying images... [ 79%] _notebooks/PlotExamples_files/PlotExamples_24_0.png copying images... [ 80%] examples/DataGeneratorExample_files/DataGeneratorExample_23_1.png copying images... [ 81%] _notebooks/PlotExamples_files/PlotExamples_4_0.png copying images... [ 82%] examples/PlotExamples_files/PlotExamples_6_1.png copying images... [ 83%] examples/gainMapStability_files/gainMapStability_6_3.png copying images... [ 84%] examples/PlotExamples_files/PlotExamples_30_0.png copying images... [ 86%] _notebooks/PlotExamples_files/PlotExamples_18_0.png copying images... [ 87%] _notebooks/PlotExamples_files/PlotExamples_10_1.png copying images... [ 88%] _notebooks/PlotExamples_files/PlotExamples_22_1.png copying images... [ 89%] examples/DataGeneratorExample_files/DataGeneratorExample_46_0.png copying images... [ 90%] examples/DataGeneratorExample_files/DataGeneratorExample_14_0.png copying images... [ 91%] _notebooks/gainMapStability_files/gainMapStability_12_4.png copying images... [ 92%] examples/gainMapStability_files/gainMapStability_6_2.png copying images... [ 93%] _notebooks/PlotExamples_files/PlotExamples_6_1.png copying images... [ 94%] examples/DataGeneratorExample_files/DataGeneratorExample_31_0.png copying images... [ 95%] examples/gainMapStability_files/gainMapStability_4_0.png copying images... [ 96%] examples/DataGeneratorExample_files/DataGeneratorExample_37_1.png copying images... [ 97%] examples/DataGeneratorExample_files/DataGeneratorExample_25_0.png copying images... [ 98%] examples/PlotExamples_files/PlotExamples_28_0.png copying images... [100%] examples/DataGeneratorExample_files/DataGeneratorExample_27_0.png copying static files... WARNING: html_static_path entry '/user_builds/pydetlib/checkouts/latest/lib/docs/_static' does not exist WARNING: html_static_path entry '/rtd_root/readthedocs/templates/sphinx/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 39 warnings. [rtd-command-info] start-time: 2019-06-12T12:55:44.664000Z, end-time: 2019-06-12T12:56:03.765000Z, duration: 19, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.3.5 making output directory... loading translations [en]... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 0 added, 8 changed, 0 removed reading sources... [ 12%] api/XFELDetAna Plotting not available No module named 'matplotlib.collections' reading sources... [ 25%] api/XFELDetAna.algorithms reading sources... [ 37%] api/XFELDetAna.algorithms.tests reading sources... [ 50%] api/XFELDetAna.detectors.agipd reading sources... [ 62%] api/XFELDetAna.detectors.agipd.tests reading sources... [ 75%] api/XFELDetAna.detectors.jungfrau reading sources... [ 87%] api/XFELDetAna.plotting reading sources... [100%] api/XFELDetAna.util /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst:28: WARNING: autodoc: failed to import module 'XFELDetAna.xfelpycaltools'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/xfelpycaltools.py", line 68, in from .algorithms.characterize_cti import CTICalculator File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_cti.py", line 18, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:7: WARNING: toctree contains reference to nonexisting document 'api/XFELDetAna.algorithms.cython' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:16: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.characterize_cti'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_cti.py", line 18, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:21: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.characterize_noise'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_noise.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:26: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.characterize_relgain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_relgain.py", line 14, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:36: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.correct_cti'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correct_cti.py", line 10, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:41: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.correct_offset'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correct_offset.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:46: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.correct_relgain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correct_relgain.py", line 15, in from XFELDetAna.plotting.multidim import deviationPlot3D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:51: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.correction'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator:38: ERROR: Unknown interpreted text role "method". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator.get:26: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:71: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.statistics'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/statistics.py", line 14, in from .characterize_noise import (NoiseCalculator, _noiseCalChunk, File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_noise.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_cti'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_cti.py", line 5, in from XFELDetAna.algorithms.characterize_cti import CTICalculator File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_cti.py", line 18, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:12: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_noise'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_noise.py", line 5, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:17: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_offset'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_offset.py", line 5, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:22: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_rel_gain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_rel_gain.py", line 5, in from XFELDetAna.algorithms.characterize_relgain import GainMapCalculator File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_relgain.py", line 14, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:27: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_split_events'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_split_events.py", line 6, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:32: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_correct_common_mode'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_correct_common_mode.py", line 6, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:37: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_correct_cti'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_correct_cti.py", line 5, in from XFELDetAna.algorithms.correct_cti import CTICorrection File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correct_cti.py", line 10, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:42: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_correct_offset'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_correct_offset.py", line 6, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:47: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_correct_relgain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_correct_relgain.py", line 5, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:52: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_statistics'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_statistics.py", line 6, in from XFELDetAna.algorithms.statistics import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/statistics.py", line 14, in from .characterize_noise import (NoiseCalculator, _noiseCalChunk, File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_noise.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:57: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_unitary'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_unitary.py", line 7, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:62: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.testing_base'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:16: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.agipd.characterize_dynrange'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/characterize_dynrange.py", line 18, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:31: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.agipd.threshold_gain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/threshold_gain.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.tests.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.agipd.tests.test_threshold_gain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/tests/test_threshold_gain.py", line 6, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.jungfrau.characterize_jfgain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/characterize_jfgain.py", line 14, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst:12: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.jungfrau.fitFuncs'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/fitFuncs.py", line 2, in from iminuit.util import make_func_code ImportError: No module named 'iminuit.util' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/jf_chunk_reader.py:docstring of XFELDetAna.detectors.jungfrau.jf_chunk_reader.JFChunkReader.readChunks:10: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.plotting.heatmap'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/heatmap.py", line 273, in import matplotlib.collections as mcoll ImportError: No module named 'matplotlib.collections' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst:17: WARNING: autodoc: failed to import module 'XFELDetAna.plotting.multidim'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.util.cluster'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:17: WARNING: __all__ should be a list of strings, not .wrapped at 0x7fc82080e488> (in module XFELDetAna.util.knumpy) -- ignoring __all__ looking for now-outdated files... none found pickling environment... done checking consistency... /user_builds/pydetlib/checkouts/latest/lib/docs/examples/DataGeneratorExample.rst:: WARNING: document isn't included in any toctree /user_builds/pydetlib/checkouts/latest/lib/docs/examples/PlotExamples.rst:: WARNING: document isn't included in any toctree /user_builds/pydetlib/checkouts/latest/lib/docs/examples/gainMapStability.rst:: WARNING: document isn't included in any toctree done preparing documents... done assembling single document... installation _notebooks/index _notebooks/gainMapStability _notebooks/DataGeneratorExample _notebooks/calculatorCreation _notebooks/PlotExamples api/modules api/XFELDetAna api/XFELDetAna.algorithms api/XFELDetAna.algorithms.gpu api/XFELDetAna.algorithms.gpu.kernels api/XFELDetAna.algorithms.tests api/XFELDetAna.core api/XFELDetAna.detectors api/XFELDetAna.detectors.agipd api/XFELDetAna.detectors.agipd.dyrange_algorithms api/XFELDetAna.detectors.agipd.gpu api/XFELDetAna.detectors.agipd.gpu.kernels api/XFELDetAna.detectors.agipd.tests api/XFELDetAna.detectors.dssc api/XFELDetAna.detectors.edf_data api/XFELDetAna.detectors.epix api/XFELDetAna.detectors.fastccd api/XFELDetAna.detectors.generator api/XFELDetAna.detectors.jungfrau api/XFELDetAna.detectors.lpd api/XFELDetAna.detectors.pnccd api/XFELDetAna.plotting api/XFELDetAna.util writing... done writing additional files... copying images... [ 2%] _notebooks/gainMapStability_files/gainMapStability_9_0.png copying images... [ 4%] _notebooks/PlotExamples_files/PlotExamples_6_0.png copying images... [ 6%] _notebooks/gainMapStability_files/gainMapStability_12_1.png copying images... [ 8%] _notebooks/gainMapStability_files/gainMapStability_12_5.png copying images... [ 11%] _notebooks/PlotExamples_files/PlotExamples_24_0.png copying images... [ 13%] _notebooks/gainMapStability_files/gainMapStability_12_4.png copying images... [ 15%] _notebooks/gainMapStability_files/gainMapStability_16_0.png copying images... [ 17%] _notebooks/DataGeneratorExample_files/DataGeneratorExample_17_1.png copying images... [ 20%] _notebooks/PlotExamples_files/PlotExamples_18_0.png copying images... [ 22%] _notebooks/gainMapStability_files/gainMapStability_12_7.png copying images... [ 24%] _notebooks/PlotExamples_files/PlotExamples_10_1.png copying images... [ 26%] _notebooks/PlotExamples_files/PlotExamples_10_0.png copying images... [ 28%] _notebooks/PlotExamples_files/PlotExamples_26_0.png copying images... [ 31%] _notebooks/gainMapStability_files/gainMapStability_12_10.png copying images... [ 33%] _notebooks/PlotExamples_files/PlotExamples_2_0.png copying images... [ 35%] _notebooks/PlotExamples_files/PlotExamples_40_0.png copying images... [ 37%] _notebooks/PlotExamples_files/PlotExamples_6_1.png copying images... [ 40%] _notebooks/PlotExamples_files/PlotExamples_22_1.png copying images... [ 42%] _notebooks/PlotExamples_files/PlotExamples_42_0.png copying images... [ 44%] _notebooks/PlotExamples_files/PlotExamples_12_0.png copying images... [ 46%] _notebooks/gainMapStability_files/gainMapStability_11_0.png copying images... [ 48%] _notebooks/gainMapStability_files/gainMapStability_12_6.png copying images... [ 51%] _notebooks/PlotExamples_files/PlotExamples_14_0.png copying images... [ 53%] _notebooks/gainMapStability_files/gainMapStability_12_3.png copying images... [ 55%] _notebooks/PlotExamples_files/PlotExamples_4_1.png copying images... [ 57%] _notebooks/PlotExamples_files/PlotExamples_14_1.png copying images... [ 60%] _notebooks/gainMapStability_files/gainMapStability_12_2.png copying images... [ 62%] _notebooks/gainMapStability_files/gainMapStability_4_0.png copying images... [ 64%] _notebooks/PlotExamples_files/PlotExamples_16_0.png copying images... [ 66%] _notebooks/PlotExamples_files/PlotExamples_38_0.png copying images... [ 68%] _notebooks/gainMapStability_files/gainMapStability_12_8.png copying images... [ 71%] _notebooks/PlotExamples_files/PlotExamples_36_0.png copying images... [ 73%] _notebooks/gainMapStability_files/gainMapStability_10_0.png copying images... [ 75%] _notebooks/gainMapStability_files/gainMapStability_12_9.png copying images... [ 77%] _notebooks/gainMapStability_files/gainMapStability_13_0.png copying images... [ 80%] _notebooks/PlotExamples_files/PlotExamples_8_1.png copying images... [ 82%] _notebooks/PlotExamples_files/PlotExamples_8_0.png copying images... [ 84%] _notebooks/PlotExamples_files/PlotExamples_4_0.png copying images... [ 86%] _notebooks/PlotExamples_files/PlotExamples_34_0.png copying images... [ 88%] _notebooks/PlotExamples_files/PlotExamples_8_2.png copying images... [ 91%] _notebooks/PlotExamples_files/PlotExamples_32_0.png copying images... [ 93%] _notebooks/PlotExamples_files/PlotExamples_28_0.png copying images... [ 95%] _notebooks/PlotExamples_files/PlotExamples_22_2.png copying images... [ 97%] _notebooks/PlotExamples_files/PlotExamples_20_0.png copying images... [100%] _notebooks/PlotExamples_files/PlotExamples_30_0.png copying static files... WARNING: html_static_path entry '/user_builds/pydetlib/checkouts/latest/lib/docs/_static' does not exist WARNING: html_static_path entry '/rtd_root/readthedocs/templates/sphinx/_static' does not exist done copying extra files... done dumping object inventory... done build succeeded, 39 warnings. [rtd-command-info] start-time: 2019-06-12T12:56:05.784000Z, end-time: 2019-06-12T12:56:21.748000Z, duration: 15, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.3.5 making output directory... loading translations [en]... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 0 added, 8 changed, 0 removed reading sources... [ 12%] api/XFELDetAna Plotting not available No module named 'matplotlib.collections' reading sources... [ 25%] api/XFELDetAna.algorithms reading sources... [ 37%] api/XFELDetAna.algorithms.tests reading sources... [ 50%] api/XFELDetAna.detectors.agipd reading sources... [ 62%] api/XFELDetAna.detectors.agipd.tests reading sources... [ 75%] api/XFELDetAna.detectors.jungfrau reading sources... [ 87%] api/XFELDetAna.plotting reading sources... [100%] api/XFELDetAna.util /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst:28: WARNING: autodoc: failed to import module 'XFELDetAna.xfelpycaltools'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/xfelpycaltools.py", line 68, in from .algorithms.characterize_cti import CTICalculator File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_cti.py", line 18, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:7: WARNING: toctree contains reference to nonexisting document 'api/XFELDetAna.algorithms.cython' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:16: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.characterize_cti'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_cti.py", line 18, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:21: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.characterize_noise'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_noise.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:26: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.characterize_relgain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_relgain.py", line 14, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:36: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.correct_cti'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correct_cti.py", line 10, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:41: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.correct_offset'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correct_offset.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:46: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.correct_relgain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correct_relgain.py", line 15, in from XFELDetAna.plotting.multidim import deviationPlot3D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:51: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.correction'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator:38: ERROR: Unknown interpreted text role "method". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator.get:26: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:71: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.statistics'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/statistics.py", line 14, in from .characterize_noise import (NoiseCalculator, _noiseCalChunk, File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_noise.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_cti'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_cti.py", line 5, in from XFELDetAna.algorithms.characterize_cti import CTICalculator File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_cti.py", line 18, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:12: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_noise'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_noise.py", line 5, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:17: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_offset'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_offset.py", line 5, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:22: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_rel_gain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_rel_gain.py", line 5, in from XFELDetAna.algorithms.characterize_relgain import GainMapCalculator File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_relgain.py", line 14, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:27: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_split_events'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_split_events.py", line 6, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:32: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_correct_common_mode'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_correct_common_mode.py", line 6, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:37: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_correct_cti'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_correct_cti.py", line 5, in from XFELDetAna.algorithms.correct_cti import CTICorrection File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correct_cti.py", line 10, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:42: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_correct_offset'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_correct_offset.py", line 6, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:47: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_correct_relgain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_correct_relgain.py", line 5, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:52: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_statistics'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_statistics.py", line 6, in from XFELDetAna.algorithms.statistics import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/statistics.py", line 14, in from .characterize_noise import (NoiseCalculator, _noiseCalChunk, File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_noise.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:57: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_unitary'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_unitary.py", line 7, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:62: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.testing_base'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:16: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.agipd.characterize_dynrange'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/characterize_dynrange.py", line 18, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:31: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.agipd.threshold_gain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/threshold_gain.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.tests.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.agipd.tests.test_threshold_gain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/tests/test_threshold_gain.py", line 6, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.jungfrau.characterize_jfgain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/characterize_jfgain.py", line 14, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst:12: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.jungfrau.fitFuncs'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/fitFuncs.py", line 2, in from iminuit.util import make_func_code ImportError: No module named 'iminuit.util' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/jf_chunk_reader.py:docstring of XFELDetAna.detectors.jungfrau.jf_chunk_reader.JFChunkReader.readChunks:10: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.plotting.heatmap'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/heatmap.py", line 273, in import matplotlib.collections as mcoll ImportError: No module named 'matplotlib.collections' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst:17: WARNING: autodoc: failed to import module 'XFELDetAna.plotting.multidim'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.util.cluster'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:17: WARNING: __all__ should be a list of strings, not .wrapped at 0x7f95ff10a510> (in module XFELDetAna.util.knumpy) -- ignoring __all__ looking for now-outdated files... none found pickling environment... done checking consistency... /user_builds/pydetlib/checkouts/latest/lib/docs/examples/DataGeneratorExample.rst:: WARNING: document isn't included in any toctree /user_builds/pydetlib/checkouts/latest/lib/docs/examples/PlotExamples.rst:: WARNING: document isn't included in any toctree /user_builds/pydetlib/checkouts/latest/lib/docs/examples/gainMapStability.rst:: WARNING: document isn't included in any toctree done processing src.tex... index installation _notebooks/index _notebooks/gainMapStability _notebooks/DataGeneratorExample _notebooks/calculatorCreation _notebooks/PlotExamples api/modules api/XFELDetAna api/XFELDetAna.algorithms api/XFELDetAna.algorithms.gpu api/XFELDetAna.algorithms.gpu.kernels api/XFELDetAna.algorithms.tests api/XFELDetAna.core api/XFELDetAna.detectors api/XFELDetAna.detectors.agipd api/XFELDetAna.detectors.agipd.dyrange_algorithms api/XFELDetAna.detectors.agipd.gpu api/XFELDetAna.detectors.agipd.gpu.kernels api/XFELDetAna.detectors.agipd.tests api/XFELDetAna.detectors.dssc api/XFELDetAna.detectors.edf_data api/XFELDetAna.detectors.epix api/XFELDetAna.detectors.fastccd api/XFELDetAna.detectors.generator api/XFELDetAna.detectors.jungfrau api/XFELDetAna.detectors.lpd api/XFELDetAna.detectors.pnccd api/XFELDetAna.plotting api/XFELDetAna.util resolving references... writing... done copying images... _notebooks/PlotExamples_files/PlotExamples_40_0.png _notebooks/PlotExamples_files/PlotExamples_38_0.png _notebooks/PlotExamples_files/PlotExamples_4_1.png _notebooks/PlotExamples_files/PlotExamples_30_0.png _notebooks/PlotExamples_files/PlotExamples_6_0.png _notebooks/PlotExamples_files/PlotExamples_8_2.png _notebooks/gainMapStability_files/gainMapStability_16_0.png _notebooks/PlotExamples_files/PlotExamples_14_1.png _notebooks/PlotExamples_files/PlotExamples_2_0.png _notebooks/PlotExamples_files/PlotExamples_12_0.png _notebooks/PlotExamples_files/PlotExamples_22_2.png _notebooks/gainMapStability_files/gainMapStability_11_0.png _notebooks/PlotExamples_files/PlotExamples_16_0.png _notebooks/PlotExamples_files/PlotExamples_32_0.png _notebooks/gainMapStability_files/gainMapStability_12_8.png _notebooks/gainMapStability_files/gainMapStability_10_0.png _notebooks/gainMapStability_files/gainMapStability_12_3.png _notebooks/gainMapStability_files/gainMapStability_12_9.png _notebooks/gainMapStability_files/gainMapStability_13_0.png _notebooks/PlotExamples_files/PlotExamples_10_1.png _notebooks/gainMapStability_files/gainMapStability_12_7.png _notebooks/PlotExamples_files/PlotExamples_22_1.png _notebooks/gainMapStability_files/gainMapStability_12_10.png _notebooks/PlotExamples_files/PlotExamples_6_1.png _notebooks/PlotExamples_files/PlotExamples_24_0.png _notebooks/gainMapStability_files/gainMapStability_12_1.png _notebooks/gainMapStability_files/gainMapStability_12_4.png _notebooks/PlotExamples_files/PlotExamples_26_0.png _notebooks/gainMapStability_files/gainMapStability_9_0.png _notebooks/gainMapStability_files/gainMapStability_4_0.png _notebooks/PlotExamples_files/PlotExamples_36_0.png _notebooks/PlotExamples_files/PlotExamples_18_0.png _notebooks/PlotExamples_files/PlotExamples_8_0.png _notebooks/PlotExamples_files/PlotExamples_8_1.png _notebooks/PlotExamples_files/PlotExamples_34_0.png _notebooks/PlotExamples_files/PlotExamples_4_0.png _notebooks/PlotExamples_files/PlotExamples_28_0.png _notebooks/PlotExamples_files/PlotExamples_14_0.png _notebooks/gainMapStability_files/gainMapStability_12_6.png _notebooks/PlotExamples_files/PlotExamples_42_0.png _notebooks/PlotExamples_files/PlotExamples_20_0.png _notebooks/PlotExamples_files/PlotExamples_10_0.png _notebooks/gainMapStability_files/gainMapStability_12_2.png _notebooks/gainMapStability_files/gainMapStability_12_5.png _notebooks/DataGeneratorExample_files/DataGeneratorExample_17_1.png copying TeX support files... done build succeeded, 37 warnings. [rtd-command-info] start-time: 2019-06-12T12:56:21.821000Z, end-time: 2019-06-12T12:56:27.739000Z, duration: 5, exit-code: 0 pdflatex -interaction=nonstopmode /user_builds/pydetlib/checkouts/latest/doc/_build/latex/src.tex This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (/user_builds/pydetlib/checkouts/latest/doc/_build/latex/src.tex LaTeX2e <2014/05/01> Babel <3.9l> and hyphenation patterns for 2 languages loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2009/06/02 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./fncychap.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/fancybox/fancybox.sty Style option: `fancybox' v1.4 <2010/05/15> (tvz) ) (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty) (./tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty))) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty )) (/usr/share/texlive/texmf-dist/tex/latex/threeparttable/threeparttable.sty) (/usr/share/texlive/texmf-dist/tex/latex/mdwtools/footnote.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/generic/pdftex/pdfcolor.tex) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) Package hyperref Message: Driver (autodetected): hpdftex. (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (/usr/share/texlive/texmf-dist/tex/latex/caption/newfloat.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (/usr/share/texlive/texmf-dist/tex/latex/multirow/multirow.sty) (/usr/share/texlive/texmf-dist/tex/latex/eqparbox/eqparbox.sty (/usr/share/texlive/texmf-dist/tex/latex/environ/environ.sty (/usr/share/texlive/texmf-dist/tex/latex/trimspaces/trimspaces.sty))) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty) Writing index file src.idx No file src.aux. (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) Underfull \hbox (badness 10000) in paragraph at lines 133--133 (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] Adding blank page after the table of contents. [1] [2] [1] [2] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [3] [4] Chapter 2. [5] [6] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 196--197 []\T1/ptm/b/n/10 :raw-latex:`\begin{equation*} p'_{i,k}(v_i) = \frac{p_{i,k}(v_ i)}{\sum_{k=-1}^{1} p_{i,k}(v_i) } Underfull \hbox (badness 10000) in paragraph at lines 202--203 []\T1/ptm/b/n/10 :raw-latex:`\begin{equation*} \lan-gle px_{x,y,c} \ran-gle = \ frac{\sum_{i=0}^{N} (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Overfull \hbox (24.441pt too wide) in paragraph at lines 229--230 []\T1/ptm/b/n/10 :raw-latex:`\begin{equation*} \sigma_{F,k}(\mathrm{ADU}) = \fr ac{R_F*\omega*A_{\gamma}}{E_{\gamma}} Underfull \hbox (badness 10000) in paragraph at lines 235--236 []\T1/ptm/b/n/10 :raw-latex:`\begin{equation*} \sigma_k(\mathrm{ADU}) = \sqrt{\ sigma_{F,k}^2 + [7] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Underfull \vbox (badness 10000) detected at line 477 Underfull \vbox (badness 10000) detected at line 477 [8] Underfull \vbox (badness 10000) detected at line 477 Underfull \vbox (badness 10000) detected at line 477 [9] Underfull \vbox (badness 10000) detected at line 477 Underfull \vbox (badness 10000) detected at line 477 [10] Underfull \vbox (badness 10000) detected at line 477 Underfull \vbox (badness 10000) detected at line 477 [11] [12 <./gainMapSta bility_4_0.png>] [13] Underfull \vbox (badness 10000) detected at line 695 Underfull \vbox (badness 10000) detected at line 695 [14] Underfull \vbox (badness 10000) detected at line 716 [15] Underfull \vbox (badness 10000) detected at line 812 [16] [17] Underfull \vbox (badness 1122) detected at line 904 [18 <./gainMapStability_9_0.png>] Underfull \vbox (badness 10000) detected at line 904 Underfull \vbox (badness 10000) detected at line 904 [19] [20] Underfull \vbox (badness 10000) detected at line 975 [21 <./gainMapStability_10_0.png>] Underfull \vbox (badness 10000) detected at line 975 Underfull \vbox (badness 10000) detected at line 975 [22] Underfull \vbox (badness 10000) detected at line 1018 [23 <./gainMapStability_11_0.png>] [24] [25 <./gainMapS tability_12_1.png>] [26 <./gainMapS tability_12_2.png>] [27 <./gainMapS tability_12_3.png>] [28 <./gainMapS tability_12_4.png>] [29 <./gainMapS tability_12_5.png>] [30 <./gainMapS tability_12_6.png>] [31 <./gainMapS tability_12_7.png>] [32 <./gainMa pStability_12_8.png>] [33 <./gainMapStability_12_9.png>] Underfull \vbox (badness 5970) detected at line 1068 [34 <./gainMapStability_12_10.png>] Overfull \vbox (0.57379pt too high) detected at line 1167 [35 <./gainMapStability_13_0.png>] Underfull \vbox (badness 10000) detected at line 1167 Underfull \vbox (badness 10000) detected at line 1167 [36] Underfull \vbox (badness 2302) detected at line 1262 [37] [38] [39 <./gai nMapStability_16_0.png>] [40] LaTeX Warning: Hyper reference `api/XFELDetAna.core:XFELDetAna.core.reader.Chun kReader' on page 41 undefined on input line 1431. [41] LaTeX Warning: Hyper reference `api/XFELDetAna.algorithms:XFELDetAna.algorithms .histogram.HistogramCalculator' on page 42 undefined on input line 1463. [42] LaTeX Warning: Hyper reference `api/XFELDetAna:module-XFELDetAna.xfelpyanatools ' on page 43 undefined on input line 1553. [43] [44 <./DataGeneratorExample_17_1.png>] Underfull \vbox (badness 10000) detected at line 1728 Underfull \vbox (badness 10000) detected at line 1728 [45] LaTeX Warning: Hyper reference `api/XFELDetAna:module-XFELDetAna.xfelpyanatools ' on page 46 undefined on input line 1756. [46] [47] LaTeX Warning: Hyper reference `_notebooks/gainMapStability:gainmapstability' o n page 48 undefined on input line 1870. [48] [49] [50] [51] [52] [53] Underfull \vbox (badness 10000) detected at line 2364 Underfull \vbox (badness 10000) detected at line 2364 [54] [55] [56 <./PlotExamples_2_0.p ng>] [57 <./PlotExamples_4_0.p ng> <./PlotExamples_4_1.png>] [58 <./PlotExamples_6_0.p ng> <./PlotExamples_6_1.png>] [59 <./PlotExamples_8_0.p ng> <./PlotExamples_8_1.png>] [60 <./PlotExamples_8_2.png>] [61 <./PlotExamples_10_ 0.png> <./PlotExamples_10_1.png>] [62 <./PlotExamples_12_0.png>] [63 <./PlotExamples_14_0.png> <./PlotExamples_14_1. png>] [64 <./PlotExamples_16_ 0.png>] [65 <./PlotExamples_18_ 0.png> <./PlotExamples_20_0.png>] [66] [67 <./PlotExamples_22_ 1.png> <./PlotExamples_22_2.png>] [68 <./PlotExamples_24_ 0.png>] [69] [70 <./PlotExample s_26_0.png>] [71 <./PlotExamples_28_ 0.png>] [72 <./PlotExamples_30_ 0.png>] [73 <./PlotExamples_32_ 0.png>] [74 <./PlotExamples_34_ 0.png>] [75 <./PlotExamples_36_ 0.png>] [76 <./PlotExamples_38_ 0.png>] [77 <./PlotExamples_40_ 0.png>] [78 <./PlotExamples_42_0.png>] Chapter 4. Overfull \hbox (92.52464pt too wide) in paragraph at lines 3197--3197 []\T1/ptm/m/it/10 datalength\T1/ptm/m/n/10 , Overfull \hbox (58.5348pt too wide) in paragraph at lines 3197--3197 \T1/ptm/m/it/10 re- Overfull \hbox (67.24477pt too wide) in paragraph at lines 3197--3197 \T1/ptm/m/it/10 turn- Overfull \hbox (100.91441pt too wide) in paragraph at lines 3197--3197 \T1/ptm/m/it/10 Stats=False\T1/pcr/m/n/10 ) [79] Overfull \hbox (68.52464pt too wide) in paragraph at lines 3203--3203 []\T1/ptm/m/it/10 datalength\T1/ptm/m/n/10 , Overfull \hbox (34.5348pt too wide) in paragraph at lines 3203--3203 \T1/ptm/m/it/10 re- Overfull \hbox (43.24477pt too wide) in paragraph at lines 3203--3203 \T1/ptm/m/it/10 turn- Overfull \hbox (48.6947pt too wide) in paragraph at lines 3203--3203 \T1/ptm/m/it/10 Stats\T1/pcr/m/n/10 ) Overfull \hbox (72.02464pt too wide) in paragraph at lines 3209--3209 []\T1/ptm/m/it/10 datalength\T1/pcr/m/n/10 ) Overfull \hbox (21.52492pt too wide) in paragraph at lines 3215--3215 []\T1/ptm/m/it/10 lo\T1/ptm/m/n/10 , Overfull \hbox (21.52492pt too wide) in paragraph at lines 3215--3215 \T1/ptm/m/it/10 hi\T1/ptm/m/n/10 , Overfull \hbox (21.36488pt too wide) in paragraph at lines 3215--3215 \T1/ptm/m/it/10 r\T1/pcr/m/n/10 ) Overfull \hbox (72.24475pt too wide) in paragraph at lines 3221--3221 []\T1/ptm/m/it/10 length\T1/pcr/m/n/10 ) Overfull \hbox (87.52492pt too wide) in paragraph at lines 3230--3230 []\T1/ptm/m/it/10 lo\T1/ptm/m/n/10 , Overfull \hbox (91.02492pt too wide) in paragraph at lines 3230--3230 \T1/ptm/m/it/10 hi\T1/pcr/m/n/10 ) Overfull \hbox (34.49384pt too wide) in paragraph at lines 3263--3263 []\T1/ptm/m/it/10 statsPerPixel=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 statsPer- Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 Me-m-o- Overfull \hbox (6.96422pt too wide) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 ryCell=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 statsPer- Overfull \hbox (4.18445pt too wide) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 Pulse=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 statsPer- Overfull \hbox (1.9646pt too wide) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 Gain=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 std=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 min- Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 Max=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 gain- Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 Map=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 me- Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 dian=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 thresh-old- Overfull \hbox (1.60475pt too wide) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 High=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 thresh-old- Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 Low=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 thresh- Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 oldA-gain-st- Overfull \hbox (4.74438pt too wide) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 Noise=False\T1/ptm/m/n/10 , Overfull \hbox (17.90439pt too wide) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 cellTable=None\T1/ptm/m/n/10 , Overfull \hbox (24.54457pt too wide) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 noiseMap=None\T1/pcr/m/n/10 ) [80] Overfull \hbox (5.57448pt too wide) in paragraph at lines 3302--3302 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , Overfull \hbox (1.95448pt too wide) in paragraph at lines 3302--3302 \T1/ptm/m/it/10 mem- Overfull \hbox (2.80418pt too wide) in paragraph at lines 3302--3302 \T1/ptm/m/it/10 Cells\T1/ptm/m/n/10 , Overfull \hbox (3.91443pt too wide) in paragraph at lines 3302--3302 \T1/ptm/m/it/10 gains\T1/ptm/m/n/10 , Overfull \hbox (26.77412pt too wide) in paragraph at lines 3302--3302 \T1/ptm/m/it/10 tile_dim=4\T1/ptm/m/n/10 , Overfull \hbox (15.10437pt too wide) in paragraph at lines 3302--3302 \T1/ptm/m/it/10 zDim=1\T1/ptm/m/n/10 , Overfull \hbox (1.29443pt too wide) in paragraph at lines 3302--3302 \T1/ptm/m/it/10 keep- Overfull \hbox (43.4043pt too wide) in paragraph at lines 3302--3302 \T1/ptm/m/it/10 OnGpu=False\T1/pcr/m/n/10 ) [81] Underfull \hbox (badness 10000) in paragraph at lines 3346--3346 \T1/ptm/m/it/10 crange=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3346--3346 \T1/ptm/m/it/10 noisemap=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3346--3346 \T1/ptm/m/it/10 shape=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3385--3385 []\T1/ptm/m/it/10 a\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-rec-tion\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3385--3385 \T1/ptm/m/it/10 block-Size\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3385--3385 \T1/ptm/m/it/10 m\T1/ptm/m/n/10 , \T1/ptm/m/it/10 crange\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3385--3385 \T1/ptm/m/it/10 shape=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3385--3385 \T1/ptm/m/it/10 keep- Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 []\T1/ptm/m/it/10 a\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-rec-tion\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 block-Size\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 noisemap\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 crange\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mem- Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 Cells\T1/ptm/m/n/10 , \T1/ptm/m/it/10 stack\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 sig\T1/ptm/m/n/10 , \T1/ptm/m/it/10 bs=4\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 cellTable=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 gain- Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 Code=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 shape=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 keep- Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 OnGpu=False\T1/ptm/m/n/10 , [82] Underfull \hbox (badness 10000) in paragraph at lines 3502--3502 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3502--3502 \T1/ptm/m/it/10 block-Size\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3502--3502 \T1/ptm/m/it/10 ori-en- Underfull \hbox (badness 10000) in paragraph at lines 3502--3502 \T1/ptm/m/it/10 ta-tion\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3502--3502 \T1/ptm/m/it/10 cores=4\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3502--3502 \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , Overfull \hbox (12.94408pt too wide) in paragraph at lines 3502--3502 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , LaTeX Warning: Hyper reference `api/XFELDetAna.core:XFELDetAna.core.mapcalculat or.MapCalculator' on page 83 undefined on input line 3503. [83] [84] Underfull \hbox (badness 10000) in paragraph at lines 3644--3644 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , \T1/ptm/m/it/10 bins\T1/ptm/m/n/10 , \T 1/ptm/m/it/10 range\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3644--3644 \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dType= for immediate help. ... l.3826 \begin{Verbatim}[commandchars=\\\{\}] [87] LaTeX Warning: Hyper reference `api/XFELDetAna.core:XFELDetAna.core.mapcalculat or.MapCalculator' on page 88 undefined on input line 3928. [88] Underfull \hbox (badness 10000) in paragraph at lines 4065--4066 []\T1/pcr/b/n/10 function. For any 1-d vector in this list it will be Underfull \hbox (badness 10000) in paragraph at lines 4068--4069 []\T1/pcr/b/n/10 to mask/remove data as is done with the data block. Underfull \hbox (badness 10000) in paragraph at lines 4074--4075 []\T1/pcr/b/n/10 where True denotes remove of an image at this position. Underfull \hbox (badness 10000) in paragraph at lines 4077--4078 []\T1/pcr/b/n/10 indices is given, the evaluation function is NOT evaluated. Underfull \hbox (badness 10000) in paragraph at lines 4098--4098 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , LaTeX Warning: Hyper reference `api/XFELDetAna.core:XFELDetAna.core.mapcalculat or.MapCalculator' on page 89 undefined on input line 4099. [89] Underfull \hbox (badness 10000) in paragraph at lines 4166--4166 \T1/ptm/m/it/10 ry-Thresh-old\T1/ptm/m/n/10 , \T1/ptm/m/it/10 sec-ondary- Underfull \hbox (badness 10000) in paragraph at lines 4166--4166 \T1/ptm/m/it/10 Thresh-old\T1/ptm/m/n/10 , \T1/ptm/m/it/10 up-perThresh- Underfull \hbox (badness 10000) in paragraph at lines 4166--4166 \T1/ptm/m/it/10 old\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tag-FirstS-in-gles=0\T1/ptm /m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4166--4166 \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dType= for immediate help. ... l.4295 \item {} \begin{description} Underfull \hbox (badness 5711) in paragraph at lines 4333--4336 []\T1/ptm/m/n/10 the iden-ti-fied pat- [91] Underfull \hbox (badness 10000) in paragraph at lines 4484--4484 []\T1/ptm/m/it/10 shape, selectionList=[-1], Underfull \hbox (badness 10000) in paragraph at lines 4484--4484 \T1/ptm/m/it/10 nCells=1, dType=\T1/ptm/m/n/10 , \T1/ptm/m/it/10 par-al-lel=Tru e\T1/ptm/m/n/10 , [95] LaTeX Warning: Hyper reference `api/XFELDetAna.core:XFELDetAna.core.profiler.Si ngleton' on page 96 undefined on input line 4949. [96] Underfull \hbox (badness 10000) in paragraph at lines 5066--5066 []\T1/ptm/m/it/10 functionsToProfile\T1/ptm/m/n/10 , \T1/ptm/m/it/10 val-uesTo- VaryCpu\T1/ptm/m/n/10 , \T1/ptm/m/it/10 val-uesTo- Underfull \hbox (badness 10000) in paragraph at lines 5066--5066 \T1/ptm/m/it/10 VaryGpu=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nRe-peats=None\T1/ ptm/m/n/10 , \T1/ptm/m/it/10 val-uesTo-P-re- Underfull \hbox (badness 10000) in paragraph at lines 5078--5078 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 read-Fun\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 size\T1/ptm/m/n/10 , \T1/ptm/m/it/10 chunk-Size\T1/ptm/m/n /10 , \T1/ptm/m/it/10 *args\T1/ptm/m/n/10 , [97] Overfull \hbox (118.35437pt too wide) in paragraph at lines 5187--5187 []\T1/ptm/m/it/10 asic, Overfull \hbox (110.85449pt too wide) in paragraph at lines 5187--5187 \T1/ptm/m/it/10 in- Overfull \hbox (132.14438pt too wide) in paragraph at lines 5187--5187 \T1/ptm/m/it/10 put_file, Overfull \hbox (115.85449pt too wide) in paragraph at lines 5187--5187 \T1/ptm/m/it/10 out- Overfull \hbox (158.80429pt too wide) in paragraph at lines 5187--5187 \T1/ptm/m/it/10 put_file_name, Overfull \hbox (168.33421pt too wide) in paragraph at lines 5187--5187 \T1/ptm/m/it/10 max_part=None, Overfull \hbox (160.26404pt too wide) in paragraph at lines 5187--5187 \T1/ptm/m/it/10 col_spec=[0]\T1/pcr/m/n/10 ) [98] [99] Overfull \hbox (88.35437pt too wide) in paragraph at lines 5379--5379 []\T1/ptm/m/it/10 asic, Overfull \hbox (80.85449pt too wide) in paragraph at lines 5379--5379 \T1/ptm/m/it/10 in- Overfull \hbox (102.14438pt too wide) in paragraph at lines 5379--5379 \T1/ptm/m/it/10 put_file, Overfull \hbox (85.85449pt too wide) in paragraph at lines 5379--5379 \T1/ptm/m/it/10 out- Overfull \hbox (128.80429pt too wide) in paragraph at lines 5379--5379 \T1/ptm/m/it/10 put_file_name, Overfull \hbox (138.33421pt too wide) in paragraph at lines 5379--5379 \T1/ptm/m/it/10 max_part=None, Overfull \hbox (126.76404pt too wide) in paragraph at lines 5379--5379 \T1/ptm/m/it/10 col_spec=[0], Overfull \hbox (91.75453pt too wide) in paragraph at lines 5379--5379 \T1/ptm/m/it/10 back- Overfull \hbox (138.24399pt too wide) in paragraph at lines 5379--5379 \T1/ptm/m/it/10 ing_store=True\T1/pcr/m/n/10 ) [100] Overfull \hbox (16.35437pt too wide) in paragraph at lines 5610--5610 []\T1/ptm/m/it/10 asic\T1/ptm/m/n/10 , Overfull \hbox (8.85449pt too wide) in paragraph at lines 5610--5610 \T1/ptm/m/it/10 in- Overfull \hbox (42.46434pt too wide) in paragraph at lines 5610--5610 \T1/ptm/m/it/10 put_fname\T1/ptm/m/n/10 , Overfull \hbox (46.35382pt too wide) in paragraph at lines 5610--5610 \T1/ptm/m/it/10 pixel_v_list\T1/ptm/m/n/10 , Overfull \hbox (46.91388pt too wide) in paragraph at lines 5610--5610 \T1/ptm/m/it/10 pixel_u_list\T1/ptm/m/n/10 , Overfull \hbox (55.79376pt too wide) in paragraph at lines 5610--5610 \T1/ptm/m/it/10 mem_cell_list\T1/ptm/m/n/10 , Overfull \hbox (48.67407pt too wide) in paragraph at lines 5610--5610 \T1/ptm/m/it/10 n_processes\T1/ptm/m/n/10 , Overfull \hbox (52.46382pt too wide) in paragraph at lines 5610--5610 \T1/ptm/m/it/10 safety_factor\T1/ptm/m/n/10 , Overfull \hbox (13.85449pt too wide) in paragraph at lines 5610--5610 \T1/ptm/m/it/10 out- Overfull \hbox (42.46434pt too wide) in paragraph at lines 5610--5610 \T1/ptm/m/it/10 put_fname\T1/ptm/m/n/10 , Overfull \hbox (56.3337pt too wide) in paragraph at lines 5610--5610 \T1/ptm/m/it/10 reuse_results\T1/pcr/m/n/10 ) [101] Underfull \hbox (badness 10000) in paragraph at lines 5660--5660 []\T1/ptm/m/it/10 asic\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5660--5660 \T1/ptm/m/it/10 in- Overfull \hbox (52.3242pt too wide) in paragraph at lines 5660--5660 \T1/ptm/m/it/10 put_fname=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5660--5660 \T1/ptm/m/it/10 out- Overfull \hbox (52.3242pt too wide) in paragraph at lines 5660--5660 \T1/ptm/m/it/10 put_fname=None\T1/ptm/m/n/10 , Overfull \hbox (61.21382pt too wide) in paragraph at lines 5660--5660 \T1/ptm/m/it/10 safety_factor=1000\T1/ptm/m/n/10 , Overfull \hbox (53.06406pt too wide) in paragraph at lines 5660--5660 \T1/ptm/m/it/10 plot_prefix=None\T1/ptm/m/n/10 , Overfull \hbox (42.33408pt too wide) in paragraph at lines 5660--5660 \T1/ptm/m/it/10 plot_dir=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5660--5660 \T1/ptm/m/it/10 cre- Overfull \hbox (47.13387pt too wide) in paragraph at lines 5660--5660 \T1/ptm/m/it/10 ate_plots=False\T1/ptm/m/n/10 , Overfull \hbox (51.12395pt too wide) in paragraph at lines 5660--5660 \T1/ptm/m/it/10 log_level='info'\T1/pcr/m/n/10 ) Overfull \hbox (30.1644pt too wide) in paragraph at lines 5762--5762 []\T1/ptm/m/it/10 list_to_check\T1/ptm/m/n/10 , Overfull \hbox (32.12477pt too wide) in paragraph at lines 5768--5768 []\T1/ptm/m/it/10 file_name\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 5774--5774 []\T1/ptm/m/it/10 asic\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Underfull \hbox (badness 10000) in paragraph at lines 5774--5774 \T1/ptm/m/it/10 put_file\T1/ptm/m/n/10 , Overfull \hbox (5.8542pt too wide) in paragraph at lines 5774--5774 \T1/ptm/m/it/10 pixel_v_list\T1/ptm/m/n/10 , Overfull \hbox (6.41426pt too wide) in paragraph at lines 5774--5774 \T1/ptm/m/it/10 pixel_u_list\T1/ptm/m/n/10 , Overfull \hbox (15.29414pt too wide) in paragraph at lines 5774--5774 \T1/ptm/m/it/10 mem_cell_list\T1/ptm/m/n/10 , Overfull \hbox (15.69417pt too wide) in paragraph at lines 5774--5774 \T1/ptm/m/it/10 safety_factor\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 5780--5780 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , [102] Overfull \hbox (23.8542pt too wide) in paragraph at lines 5786--5786 []\T1/ptm/m/it/10 pixel_v_list\T1/ptm/m/n/10 , Overfull \hbox (24.41426pt too wide) in paragraph at lines 5786--5786 \T1/ptm/m/it/10 pixel_u_list\T1/ptm/m/n/10 , Overfull \hbox (33.29414pt too wide) in paragraph at lines 5786--5786 \T1/ptm/m/it/10 mem_cell_list\T1/ptm/m/n/10 , Overfull \hbox (35.32455pt too wide) in paragraph at lines 5786--5786 \T1/ptm/m/it/10 n_gain_stages\T1/ptm/m/n/10 , Overfull \hbox (22.74437pt too wide) in paragraph at lines 5786--5786 \T1/ptm/m/it/10 n_intervals\T1/ptm/m/n/10 , Overfull \hbox (71.82417pt too wide) in paragraph at lines 5786--5786 \T1/ptm/m/it/10 n_diff_changes_stored\T1/pcr/m/n/10 ) Overfull \hbox (14.12477pt too wide) in paragraph at lines 5798--5798 []\T1/ptm/m/it/10 file_name\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 5842--5842 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5842--5842 \T1/ptm/m/it/10 pro- Overfull \hbox (18.2037pt too wide) in paragraph at lines 5842--5842 \T1/ptm/m/it/10 cess_results\T1/ptm/m/n/10 , Overfull \hbox (23.78394pt too wide) in paragraph at lines 5842--5842 \T1/ptm/m/it/10 asics=array([ Underfull \hbox (badness 10000) in paragraph at lines 5842--5842 \T1/ptm/m/it/10 16])\T1/ptm/m/n/10 , Overfull \hbox (7.55418pt too wide) in paragraph at lines 5842--5842 \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , Overfull \hbox (24.94408pt too wide) in paragraph at lines 5842--5842 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , Overfull \hbox (12.26428pt too wide) in paragraph at lines 5842--5842 \T1/ptm/m/it/10 **kwargs\T1/pcr/m/n/10 ) LaTeX Warning: Hyper reference `api/XFELDetAna.core:XFELDetAna.core.mapcalculat or.MapCalculator' on page 103 undefined on input line 5843. [103] [104] [105] Underfull \hbox (badness 10000) in paragraph at lines 6114--6116 []\T1/ptm/m/n/10 Usually the Underfull \hbox (badness 10000) in paragraph at lines 6154--6162 []\T1/ptm/m/n/10 __init__(self,FileName) Get-N-u-mIm-ages(self) def Get-Data(se lf,Index, Underfull \hbox (badness 10000) in paragraph at lines 6154--6162 \T1/ptm/m/n/10 DataType='''',Pos=None,Size=None): Get-Pixel(self,Index,Position ) Get-H-eader(self,Index) Get-Static- Overfull \hbox (4.81062pt too wide) in paragraph at lines 6154--6162 \T1/ptm/m/n/10 Header(self,Index) WriteIm-age (self,Header,Data,Append=1,DataTy pe='''',WriteAsUnsigened=0,ByteOrder='''') [106] LaTeX Warning: Hyper reference `api/XFELDetAna.detectors.edf_data:XFELDetAna.de tectors.edf_data.EdfFile.EdfFile' on page 107 undefined on input line 6241. Underfull \hbox (badness 10000) in paragraph at lines 6248--6248 []\T1/ptm/m/it/10 FileNameOrFileDescriptor\T1/ptm/m/n/10 , \T1/ptm/m/it/10 fast - [107] LaTeX Warning: Hyper reference `api/XFELDetAna.detectors.edf_data:XFELDetAna.de tectors.edf_data.EdfFile.EdfFile' on page 108 undefined on input line 6410. [108] [109] [110] [111] Underfull \hbox (badness 10000) in paragraph at lines 6794--6794 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 path='/stream'\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6881--6881 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6881--6881 \T1/ptm/m/it/10 read-Fun\T1/ptm/m/n/10 , Overfull \hbox (9.66417pt too wide) in paragraph at lines 6881--6881 \T1/ptm/m/it/10 filesRange=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6881--6881 \T1/ptm/m/it/10 *args\T1/ptm/m/n/10 , LaTeX Warning: Hyper reference `api/XFELDetAna.core:XFELDetAna.core.reader.Chun kReader' on page 112 undefined on input line 6882. [112] [113] [114] Underfull \hbox (badness 10000) in paragraph at lines 7232--7234 []\T1/ptm/m/n/10 Usually the [115] [116] [117] [118] Underfull \hbox (badness 10000) in paragraph at lines 7697--7698 []\T1/pcr/b/n/10 will be passed to the matplotlib fill_between() function. [119] [120] [121] [122] [123] LaTeX Warning: Hyper reference `api/XFELDetAna.util:XFELDetAna.util.knumpy.axis Meaning' on page 124 undefined on input line 8709. [124] [125] [126] LaTeX Warning: Hyper reference `api/XFELDetAna.util:XFELDetAna.util.knumpy.axis Meaning' on page 127 undefined on input line 9245. LaTeX Warning: Hyper reference `api/XFELDetAna.util:XFELDetAna.util.knumpy.axis Meaning' on page 127 undefined on input line 9253. LaTeX Warning: Hyper reference `api/XFELDetAna.util:XFELDetAna.util.knumpy.axis Meaning' on page 127 undefined on input line 9261. [127] [128] LaTeX Warning: Hyper reference `api/XFELDetAna.util:XFELDetAna.util.knumpy.ndar ray' on page 129 undefined on input line 9598. [129] [130] [131] LaTeX Warning: Hyper reference `api/XFELDetAna.util:XFELDetAna.util.knumpy.axis Meaning' on page 132 undefined on input line 10295. [132] [133] LaTeX Warning: Hyper reference `api/XFELDetAna.util:XFELDetAna.util.knumpy.axis Meaning' on page 134 undefined on input line 10753. [134] Underfull \hbox (badness 10000) in paragraph at lines 11062--11062 []\T1/ptm/m/it/10 host=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 port=None\T1/ptm/m/ n/10 , \T1/ptm/m/it/10 read-Han- [135] Underfull \hbox (badness 10000) in paragraph at lines 11082--11082 []\T1/ptm/m/it/10 host=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 port=None\T1/ptm/m/ n/10 , \T1/ptm/m/it/10 read-Han- [136] [137] [138] Chapter 5. [139] [140] LaTeX Warning: Reference `api/XFELDetAna:module-XFELDetAna' on page 141 undefin ed on input line 11276. LaTeX Warning: Reference `api/XFELDetAna.algorithms:module-XFELDetAna.algorithm s' on page 141 undefined on input line 11277. LaTeX Warning: Reference `api/XFELDetAna.algorithms:module-XFELDetAna.algorithm s.correct_common_mode' on page 141 undefined on input line 11278. Overfull \hbox (18.6225pt too wide) in paragraph at lines 11278--11279 []\T1/pcr/m/n/10 XFELDetAna.algorithms.correct_common_mode\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.algorithms.gpu:module-XFELDetAna.algor ithms.gpu' on page 141 undefined on input line 11279. LaTeX Warning: Reference `api/XFELDetAna.algorithms.gpu:module-XFELDetAna.algor ithms.gpu.calc_offset_and_noise' on page 141 undefined on input line 11280. Overfull \hbox (54.6225pt too wide) in paragraph at lines 11280--11281 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.calc_offset_and_noise\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.algorithms.gpu:module-XFELDetAna.algor ithms.gpu.correct_common_mode' on page 141 undefined on input line 11281. Overfull \hbox (42.6225pt too wide) in paragraph at lines 11281--11282 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.correct_common_mode\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.algorithms.gpu:module-XFELDetAna.algor ithms.gpu.correct_offset' on page 141 undefined on input line 11282. Overfull \hbox (12.6225pt too wide) in paragraph at lines 11282--11283 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.correct_offset\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.algorithms.gpu:module-XFELDetAna.algor ithms.gpu.correct_relgain' on page 141 undefined on input line 11283. Overfull \hbox (18.6225pt too wide) in paragraph at lines 11283--11284 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.correct_relgain\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.algorithms.gpu.kernels:module-XFELDetA na.algorithms.gpu.kernels' on page 141 undefined on input line 11284. LaTeX Warning: Reference `api/XFELDetAna.algorithms.gpu.kernels:module-XFELDetA na.algorithms.gpu.kernels.calc_offset_and_noise' on page 141 undefined on input line 11285. Overfull \hbox (102.6225pt too wide) in paragraph at lines 11285--11286 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.calc_offset_and_noise\T1/ptm /m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.algorithms.gpu.kernels:module-XFELDetA na.algorithms.gpu.kernels.correct_common_mode' on page 141 undefined on input l ine 11286. Overfull \hbox (90.6225pt too wide) in paragraph at lines 11286--11287 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m /n/10 , LaTeX Warning: Reference `api/XFELDetAna.algorithms.gpu.kernels:module-XFELDetA na.algorithms.gpu.kernels.correct_common_mode_batcher' on page 141 undefined on input line 11287. Overfull \hbox (138.6225pt too wide) in paragraph at lines 11287--11288 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.correct_common_mode_batcher\ T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.algorithms.gpu.kernels:module-XFELDetA na.algorithms.gpu.kernels.simple_correction' on page 141 undefined on input lin e 11288. Overfull \hbox (78.6225pt too wide) in paragraph at lines 11288--11289 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.simple_correction\T1/ptm/m/n /10 , LaTeX Warning: Reference `api/XFELDetAna.algorithms.gpu.kernels:module-XFELDetA na.algorithms.gpu.kernels.split_events' on page 141 undefined on input line 112 89. Overfull \hbox (48.6225pt too wide) in paragraph at lines 11289--11290 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.split_events\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.algorithms.gpu.kernels:module-XFELDetA na.algorithms.gpu.kernels.statistics' on page 141 undefined on input line 11290 . Overfull \hbox (36.6225pt too wide) in paragraph at lines 11290--11291 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.statistics\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.algorithms.gpu.kernels:module-XFELDetA na.algorithms.gpu.kernels.util' on page 141 undefined on input line 11291. Overfull \hbox (0.6225pt too wide) in paragraph at lines 11291--11292 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.util\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.algorithms.gpu.kernels:module-XFELDetA na.algorithms.gpu.kernels.xfelgpukernels' on page 141 undefined on input line 1 1292. Overfull \hbox (60.6225pt too wide) in paragraph at lines 11292--11293 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.xfelgpukernels\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.algorithms.gpu:module-XFELDetAna.algor ithms.gpu.split_events' on page 141 undefined on input line 11293. Overfull \hbox (0.6225pt too wide) in paragraph at lines 11293--11294 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.split_events\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.algorithms.gpu:module-XFELDetAna.algor ithms.gpu.statistics' on page 141 undefined on input line 11294. Underfull \hbox (badness 10000) in paragraph at lines 11294--11295 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.statistics\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.algorithms.gpu:module-XFELDetAna.algor ithms.gpu.util' on page 141 undefined on input line 11295. LaTeX Warning: Reference `api/XFELDetAna.algorithms.gpu:module-XFELDetAna.algor ithms.gpu.xfelcalgputools' on page 141 undefined on input line 11296. Overfull \hbox (18.6225pt too wide) in paragraph at lines 11296--11297 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.xfelcalgputools\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.algorithms:module-XFELDetAna.algorithm s.histogram' on page 141 undefined on input line 11297. LaTeX Warning: Reference `api/XFELDetAna.algorithms:module-XFELDetAna.algorithm s.selection' on page 141 undefined on input line 11298. LaTeX Warning: Reference `api/XFELDetAna.algorithms:module-XFELDetAna.algorithm s.split_event' on page 141 undefined on input line 11299. LaTeX Warning: Reference `api/XFELDetAna.algorithms.tests:module-XFELDetAna.alg orithms.tests' on page 141 undefined on input line 11300. LaTeX Warning: Reference `api/XFELDetAna.algorithms:module-XFELDetAna.algorithm s.unitary' on page 141 undefined on input line 11301. LaTeX Warning: Reference `api/XFELDetAna.algorithms:module-XFELDetAna.algorithm s.util' on page 141 undefined on input line 11302. LaTeX Warning: Reference `api/XFELDetAna.core:module-XFELDetAna.core' on page 1 41 undefined on input line 11303. LaTeX Warning: Reference `api/XFELDetAna.core:module-XFELDetAna.core.decorators ' on page 141 undefined on input line 11304. LaTeX Warning: Reference `api/XFELDetAna.core:module-XFELDetAna.core.mapcalcula tor' on page 141 undefined on input line 11305. LaTeX Warning: Reference `api/XFELDetAna.core:module-XFELDetAna.core.profiler' on page 141 undefined on input line 11306. LaTeX Warning: Reference `api/XFELDetAna.core:module-XFELDetAna.core.reader' on page 141 undefined on input line 11307. LaTeX Warning: Reference `api/XFELDetAna.core:module-XFELDetAna.core.util' on p age 141 undefined on input line 11308. LaTeX Warning: Reference `api/XFELDetAna.detectors:module-XFELDetAna.detectors' on page 141 undefined on input line 11309. LaTeX Warning: Reference `api/XFELDetAna.detectors.agipd:module-XFELDetAna.dete ctors.agipd' on page 141 undefined on input line 11310. LaTeX Warning: Reference `api/XFELDetAna.detectors.agipd.dyrange_algorithms:mod ule-XFELDetAna.detectors.agipd.dyrange_algorithms' on page 141 undefined on inp ut line 11311. Overfull \hbox (42.6225pt too wide) in paragraph at lines 11311--11312 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.detectors.agipd.dyrange_algorithms:mod ule-XFELDetAna.detectors.agipd.dyrange_algorithms.gather' on page 141 undefined on input line 11312. Overfull \hbox (84.6225pt too wide) in paragraph at lines 11312--11313 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms.gather\T1/ptm/m/ n/10 , LaTeX Warning: Reference `api/XFELDetAna.detectors.agipd.dyrange_algorithms:mod ule-XFELDetAna.detectors.agipd.dyrange_algorithms.process' on page 141 undefine d on input line 11313. Overfull \hbox (90.6225pt too wide) in paragraph at lines 11313--11314 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms.process\T1/ptm/m /n/10 , LaTeX Warning: Reference `api/XFELDetAna.detectors.agipd.dyrange_algorithms:mod ule-XFELDetAna.detectors.agipd.dyrange_algorithms.util' on page 141 undefined o n input line 11314. Overfull \hbox (72.6225pt too wide) in paragraph at lines 11314--11315 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms.util\T1/ptm/m/n/ 10 , LaTeX Warning: Reference `api/XFELDetAna.detectors.agipd.gpu:module-XFELDetAna. detectors.agipd.gpu' on page 141 undefined on input line 11315. LaTeX Warning: Reference `api/XFELDetAna.detectors.agipd.gpu.kernels:module-XFE LDetAna.detectors.agipd.gpu.kernels' on page 141 undefined on input line 11316. Overfull \hbox (0.6225pt too wide) in paragraph at lines 11316--11317 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.gpu.kernels\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.detectors.agipd.gpu.kernels:module-XFE LDetAna.detectors.agipd.gpu.kernels.threshold_gain' on page 141 undefined on in put line 11317. Overfull \hbox (90.6225pt too wide) in paragraph at lines 11317--11318 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.gpu.kernels.threshold_gain\T1/ptm/m /n/10 , LaTeX Warning: Reference `api/XFELDetAna.detectors.agipd.gpu:module-XFELDetAna. detectors.agipd.gpu.threshold_gain' on page 141 undefined on input line 11318. Overfull \hbox (42.6225pt too wide) in paragraph at lines 11318--11319 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.gpu.threshold_gain\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.detectors.agipd:module-XFELDetAna.dete ctors.agipd.merge_dynrange' on page 141 undefined on input line 11319. Overfull \hbox (18.6225pt too wide) in paragraph at lines 11319--11320 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.merge_dynrange\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.detectors.agipd:module-XFELDetAna.dete ctors.agipd.reader' on page 141 undefined on input line 11320. LaTeX Warning: Reference `api/XFELDetAna.detectors.agipd.tests:module-XFELDetAn a.detectors.agipd.tests' on page 141 undefined on input line 11321. LaTeX Warning: Reference `api/XFELDetAna.detectors.dssc:module-XFELDetAna.detec tors.dssc' on page 141 undefined on input line 11322. LaTeX Warning: Reference `api/XFELDetAna.detectors.dssc:module-XFELDetAna.detec tors.dssc.reader' on page 141 undefined on input line 11323. LaTeX Warning: Reference `api/XFELDetAna.detectors.edf_data:module-XFELDetAna.d etectors.edf_data' on page 141 undefined on input line 11324. LaTeX Warning: Reference `api/XFELDetAna.detectors.edf_data:module-XFELDetAna.d etectors.edf_data.EdfFile' on page 141 undefined on input line 11325. Underfull \hbox (badness 10000) in paragraph at lines 11325--11326 []\T1/pcr/m/n/10 XFELDetAna.detectors.edf_data.EdfFile\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.detectors.edf_data:module-XFELDetAna.d etectors.edf_data.loadedf' on page 141 undefined on input line 11326. Underfull \hbox (badness 10000) in paragraph at lines 11326--11327 []\T1/pcr/m/n/10 XFELDetAna.detectors.edf_data.loadedf\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.detectors.edf_data:module-XFELDetAna.d etectors.edf_data.reader' on page 141 undefined on input line 11327. Underfull \hbox (badness 10000) in paragraph at lines 11327--11328 []\T1/pcr/m/n/10 XFELDetAna.detectors.edf_data.reader\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.detectors.epix:module-XFELDetAna.detec tors.epix' on page 141 undefined on input line 11328. LaTeX Warning: Reference `api/XFELDetAna.detectors.epix:module-XFELDetAna.detec tors.epix.reader' on page 141 undefined on input line 11329. [141] LaTeX Warning: Reference `api/XFELDetAna.detectors.fastccd:module-XFELDetAna.de tectors.fastccd' on page 142 undefined on input line 11330. LaTeX Warning: Reference `api/XFELDetAna.detectors.fastccd:module-XFELDetAna.de tectors.fastccd.reader' on page 142 undefined on input line 11331. LaTeX Warning: Reference `api/XFELDetAna.detectors.fastccd:module-XFELDetAna.de tectors.fastccd.readerh5' on page 142 undefined on input line 11332. Underfull \hbox (badness 10000) in paragraph at lines 11332--11333 []\T1/pcr/m/n/10 XFELDetAna.detectors.fastccd.readerh5\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.detectors.generator:module-XFELDetAna. detectors.generator' on page 142 undefined on input line 11333. LaTeX Warning: Reference `api/XFELDetAna.detectors.generator:module-XFELDetAna. detectors.generator.reader' on page 142 undefined on input line 11334. Underfull \hbox (badness 10000) in paragraph at lines 11334--11335 []\T1/pcr/m/n/10 XFELDetAna.detectors.generator.reader\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.detectors.jungfrau:module-XFELDetAna.d etectors.jungfrau' on page 142 undefined on input line 11335. LaTeX Warning: Reference `api/XFELDetAna.detectors.jungfrau:module-XFELDetAna.d etectors.jungfrau.jf_chunk_reader' on page 142 undefined on input line 11336. Overfull \hbox (42.6225pt too wide) in paragraph at lines 11336--11337 []\T1/pcr/m/n/10 XFELDetAna.detectors.jungfrau.jf_chunk_reader\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.detectors.jungfrau:module-XFELDetAna.d etectors.jungfrau.reader' on page 142 undefined on input line 11337. Underfull \hbox (badness 10000) in paragraph at lines 11337--11338 []\T1/pcr/m/n/10 XFELDetAna.detectors.jungfrau.reader\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.detectors.jungfrau:module-XFELDetAna.d etectors.jungfrau.readerPSI' on page 142 undefined on input line 11338. Overfull \hbox (6.6225pt too wide) in paragraph at lines 11338--11339 []\T1/pcr/m/n/10 XFELDetAna.detectors.jungfrau.readerPSI\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.detectors.jungfrau:module-XFELDetAna.d etectors.jungfrau.util' on page 142 undefined on input line 11339. LaTeX Warning: Reference `api/XFELDetAna.detectors.lpd:module-XFELDetAna.detect ors.lpd' on page 142 undefined on input line 11340. LaTeX Warning: Reference `api/XFELDetAna.detectors.lpd:module-XFELDetAna.detect ors.lpd.reader' on page 142 undefined on input line 11341. LaTeX Warning: Reference `api/XFELDetAna.detectors.pnccd:module-XFELDetAna.dete ctors.pnccd' on page 142 undefined on input line 11342. LaTeX Warning: Reference `api/XFELDetAna.detectors.pnccd:module-XFELDetAna.dete ctors.pnccd.frm6reader' on page 142 undefined on input line 11343. Underfull \hbox (badness 10000) in paragraph at lines 11343--11344 []\T1/pcr/m/n/10 XFELDetAna.detectors.pnccd.frm6reader\T1/ptm/m/n/10 , LaTeX Warning: Reference `api/XFELDetAna.detectors.pnccd:module-XFELDetAna.dete ctors.pnccd.reader' on page 142 undefined on input line 11344. LaTeX Warning: Reference `api/XFELDetAna.plotting:module-XFELDetAna.plotting' o n page 142 undefined on input line 11345. LaTeX Warning: Reference `api/XFELDetAna.plotting:module-XFELDetAna.plotting.hi stogram' on page 142 undefined on input line 11346. LaTeX Warning: Reference `api/XFELDetAna.plotting:module-XFELDetAna.plotting.si mpleplot' on page 142 undefined on input line 11347. LaTeX Warning: Reference `api/XFELDetAna.plotting:module-XFELDetAna.plotting.ut il' on page 142 undefined on input line 11348. LaTeX Warning: Reference `api/XFELDetAna.util:module-XFELDetAna.util' on page 1 42 undefined on input line 11349. LaTeX Warning: Reference `api/XFELDetAna.util:module-XFELDetAna.util.env' on pa ge 142 undefined on input line 11350. LaTeX Warning: Reference `api/XFELDetAna.util:module-XFELDetAna.util.knumpy' on page 142 undefined on input line 11351. LaTeX Warning: Reference `api/XFELDetAna.util:module-XFELDetAna.util.p2pInterfa ce' on page 142 undefined on input line 11352. LaTeX Warning: Reference `api/XFELDetAna.util:module-XFELDetAna.util.pattern_ke rnels' on page 142 undefined on input line 11353. LaTeX Warning: Reference `api/XFELDetAna:module-XFELDetAna.xfelprofiler' on pag e 142 undefined on input line 11354. LaTeX Warning: Reference `api/XFELDetAna:module-XFELDetAna.xfelpyanatools' on p age 142 undefined on input line 11355. LaTeX Warning: Reference `api/XFELDetAna:module-XFELDetAna.xfelreaders' on page 142 undefined on input line 11356. LaTeX Warning: Reference `api/XFELDetAna:module-XFELDetAna.xfelsettings' on pag e 142 undefined on input line 11357. [142] No file src.ind. (./src.aux) Package rerunfilecheck Warning: File `src.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on src.pdf (146 pages, 2438552 bytes). Transcript written on src.log. [rtd-command-info] start-time: 2019-06-12T12:56:27.823000Z, end-time: 2019-06-12T12:56:27.897000Z, duration: 0, exit-code: 0 makeindex -s python.ist src.idx This is makeindex, version 2.15 [TeX Live 2015/dev] (kpathsea + Thai support). Scanning style file ./python.ist......done (6 attributes redefined, 0 ignored). Scanning input file src.idx....done (887 entries accepted, 0 rejected). Sorting entries..........done (10148 comparisons). Generating output file src.ind....done (1081 lines written, 0 warnings). Output written in src.ind. Transcript written in src.ilg. [rtd-command-info] start-time: 2019-06-12T12:56:27.957000Z, end-time: 2019-06-12T12:56:34.242000Z, duration: 6, exit-code: 0 pdflatex -interaction=nonstopmode /user_builds/pydetlib/checkouts/latest/doc/_build/latex/src.tex This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (/user_builds/pydetlib/checkouts/latest/doc/_build/latex/src.tex LaTeX2e <2014/05/01> Babel <3.9l> and hyphenation patterns for 2 languages loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2009/06/02 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./fncychap.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/fancybox/fancybox.sty Style option: `fancybox' v1.4 <2010/05/15> (tvz) ) (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty) (./tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty))) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty )) (/usr/share/texlive/texmf-dist/tex/latex/threeparttable/threeparttable.sty) (/usr/share/texlive/texmf-dist/tex/latex/mdwtools/footnote.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/generic/pdftex/pdfcolor.tex) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) Package hyperref Message: Driver (autodetected): hpdftex. (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (/usr/share/texlive/texmf-dist/tex/latex/caption/newfloat.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (/usr/share/texlive/texmf-dist/tex/latex/multirow/multirow.sty) (/usr/share/texlive/texmf-dist/tex/latex/eqparbox/eqparbox.sty (/usr/share/texlive/texmf-dist/tex/latex/environ/environ.sty (/usr/share/texlive/texmf-dist/tex/latex/trimspaces/trimspaces.sty))) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty) Writing index file src.idx (./src.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./src.out) (./src.out) Underfull \hbox (badness 10000) in paragraph at lines 133--133 (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./src.toc) Adding blank page after the table of contents. [1] [2] [1] [2] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [3] [4] Chapter 2. [5] [6] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 196--197 []\T1/ptm/b/n/10 :raw-latex:`\begin{equation*} p'_{i,k}(v_i) = \frac{p_{i,k}(v_ i)}{\sum_{k=-1}^{1} p_{i,k}(v_i) } Underfull \hbox (badness 10000) in paragraph at lines 202--203 []\T1/ptm/b/n/10 :raw-latex:`\begin{equation*} \lan-gle px_{x,y,c} \ran-gle = \ frac{\sum_{i=0}^{N} (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Overfull \hbox (24.441pt too wide) in paragraph at lines 229--230 []\T1/ptm/b/n/10 :raw-latex:`\begin{equation*} \sigma_{F,k}(\mathrm{ADU}) = \fr ac{R_F*\omega*A_{\gamma}}{E_{\gamma}} Underfull \hbox (badness 10000) in paragraph at lines 235--236 []\T1/ptm/b/n/10 :raw-latex:`\begin{equation*} \sigma_k(\mathrm{ADU}) = \sqrt{\ sigma_{F,k}^2 + [7] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) Underfull \vbox (badness 10000) detected at line 477 Underfull \vbox (badness 10000) detected at line 477 [8] Underfull \vbox (badness 10000) detected at line 477 Underfull \vbox (badness 10000) detected at line 477 [9] Underfull \vbox (badness 10000) detected at line 477 Underfull \vbox (badness 10000) detected at line 477 [10] Underfull \vbox (badness 10000) detected at line 477 Underfull \vbox (badness 10000) detected at line 477 [11] [12 <./gainMapSta bility_4_0.png>] [13] Underfull \vbox (badness 10000) detected at line 695 Underfull \vbox (badness 10000) detected at line 695 [14] Underfull \vbox (badness 10000) detected at line 716 [15] Underfull \vbox (badness 10000) detected at line 812 [16] [17] Underfull \vbox (badness 1122) detected at line 904 [18 <./gainMapStability_9_0.png>] Underfull \vbox (badness 10000) detected at line 904 Underfull \vbox (badness 10000) detected at line 904 [19] [20] Underfull \vbox (badness 10000) detected at line 975 [21 <./gainMapStability_10_0.png>] Underfull \vbox (badness 10000) detected at line 975 Underfull \vbox (badness 10000) detected at line 975 [22] Underfull \vbox (badness 10000) detected at line 1018 [23 <./gainMapStability_11_0.png>] [24] [25 <./gainMapS tability_12_1.png>] [26 <./gainMapS tability_12_2.png>] [27 <./gainMapS tability_12_3.png>] [28 <./gainMapS tability_12_4.png>] [29 <./gainMapS tability_12_5.png>] [30 <./gainMapS tability_12_6.png>] [31 <./gainMapS tability_12_7.png>] [32 <./gainMa pStability_12_8.png>] [33 <./gainMapStability_12_9.png>] Underfull \vbox (badness 5970) detected at line 1068 [34 <./gainMapStability_12_10.png>] Overfull \vbox (0.57379pt too high) detected at line 1167 [35 <./gainMapStability_13_0.png>] Underfull \vbox (badness 10000) detected at line 1167 Underfull \vbox (badness 10000) detected at line 1167 [36] Underfull \vbox (badness 2302) detected at line 1262 [37] [38] [39 <./gai nMapStability_16_0.png>] [40] [41] [42] [43] [44 <./DataGeneratorExample_17_1.png>] Underfull \vbox (badness 10000) detected at line 1728 Underfull \vbox (badness 10000) detected at line 1728 [45] [46] [47] [48] [49] [50] [51] [52] [53] Underfull \vbox (badness 10000) detected at line 2364 Underfull \vbox (badness 10000) detected at line 2364 [54] [55] [56 <./PlotExamples_2_0.p ng>] [57 <./PlotExamples_4_0.p ng> <./PlotExamples_4_1.png>] [58 <./PlotExamples_6_0.p ng> <./PlotExamples_6_1.png>] [59 <./PlotExamples_8_0.p ng> <./PlotExamples_8_1.png>] [60 <./PlotExamples_8_2.png>] [61 <./PlotExamples_10_ 0.png> <./PlotExamples_10_1.png>] [62 <./PlotExamples_12_0.png>] [63 <./PlotExamples_14_0.png> <./PlotExamples_14_1. png>] [64 <./PlotExamples_16_ 0.png>] [65 <./PlotExamples_18_ 0.png> <./PlotExamples_20_0.png>] [66] [67 <./PlotExamples_22_ 1.png> <./PlotExamples_22_2.png>] [68 <./PlotExamples_24_ 0.png>] [69] [70 <./PlotExample s_26_0.png>] [71 <./PlotExamples_28_ 0.png>] [72 <./PlotExamples_30_ 0.png>] [73 <./PlotExamples_32_ 0.png>] [74 <./PlotExamples_34_ 0.png>] [75 <./PlotExamples_36_ 0.png>] [76 <./PlotExamples_38_ 0.png>] [77 <./PlotExamples_40_ 0.png>] [78 <./PlotExamples_42_0.png>] Chapter 4. Overfull \hbox (92.52464pt too wide) in paragraph at lines 3197--3197 []\T1/ptm/m/it/10 datalength\T1/ptm/m/n/10 , Overfull \hbox (58.5348pt too wide) in paragraph at lines 3197--3197 \T1/ptm/m/it/10 re- Overfull \hbox (67.24477pt too wide) in paragraph at lines 3197--3197 \T1/ptm/m/it/10 turn- Overfull \hbox (100.91441pt too wide) in paragraph at lines 3197--3197 \T1/ptm/m/it/10 Stats=False\T1/pcr/m/n/10 ) [79] Overfull \hbox (68.52464pt too wide) in paragraph at lines 3203--3203 []\T1/ptm/m/it/10 datalength\T1/ptm/m/n/10 , Overfull \hbox (34.5348pt too wide) in paragraph at lines 3203--3203 \T1/ptm/m/it/10 re- Overfull \hbox (43.24477pt too wide) in paragraph at lines 3203--3203 \T1/ptm/m/it/10 turn- Overfull \hbox (48.6947pt too wide) in paragraph at lines 3203--3203 \T1/ptm/m/it/10 Stats\T1/pcr/m/n/10 ) Overfull \hbox (72.02464pt too wide) in paragraph at lines 3209--3209 []\T1/ptm/m/it/10 datalength\T1/pcr/m/n/10 ) Overfull \hbox (21.52492pt too wide) in paragraph at lines 3215--3215 []\T1/ptm/m/it/10 lo\T1/ptm/m/n/10 , Overfull \hbox (21.52492pt too wide) in paragraph at lines 3215--3215 \T1/ptm/m/it/10 hi\T1/ptm/m/n/10 , Overfull \hbox (21.36488pt too wide) in paragraph at lines 3215--3215 \T1/ptm/m/it/10 r\T1/pcr/m/n/10 ) Overfull \hbox (72.24475pt too wide) in paragraph at lines 3221--3221 []\T1/ptm/m/it/10 length\T1/pcr/m/n/10 ) Overfull \hbox (87.52492pt too wide) in paragraph at lines 3230--3230 []\T1/ptm/m/it/10 lo\T1/ptm/m/n/10 , Overfull \hbox (91.02492pt too wide) in paragraph at lines 3230--3230 \T1/ptm/m/it/10 hi\T1/pcr/m/n/10 ) Overfull \hbox (34.49384pt too wide) in paragraph at lines 3263--3263 []\T1/ptm/m/it/10 statsPerPixel=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 statsPer- Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 Me-m-o- Overfull \hbox (6.96422pt too wide) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 ryCell=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 statsPer- Overfull \hbox (4.18445pt too wide) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 Pulse=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 statsPer- Overfull \hbox (1.9646pt too wide) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 Gain=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 std=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 min- Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 Max=True\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 gain- Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 Map=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 me- Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 dian=False\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 thresh-old- Overfull \hbox (1.60475pt too wide) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 High=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 thresh-old- Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 Low=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 thresh- Underfull \hbox (badness 10000) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 oldA-gain-st- Overfull \hbox (4.74438pt too wide) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 Noise=False\T1/ptm/m/n/10 , Overfull \hbox (17.90439pt too wide) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 cellTable=None\T1/ptm/m/n/10 , Overfull \hbox (24.54457pt too wide) in paragraph at lines 3263--3263 \T1/ptm/m/it/10 noiseMap=None\T1/pcr/m/n/10 ) [80] Overfull \hbox (5.57448pt too wide) in paragraph at lines 3302--3302 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , Overfull \hbox (1.95448pt too wide) in paragraph at lines 3302--3302 \T1/ptm/m/it/10 mem- Overfull \hbox (2.80418pt too wide) in paragraph at lines 3302--3302 \T1/ptm/m/it/10 Cells\T1/ptm/m/n/10 , Overfull \hbox (3.91443pt too wide) in paragraph at lines 3302--3302 \T1/ptm/m/it/10 gains\T1/ptm/m/n/10 , Overfull \hbox (26.77412pt too wide) in paragraph at lines 3302--3302 \T1/ptm/m/it/10 tile_dim=4\T1/ptm/m/n/10 , Overfull \hbox (15.10437pt too wide) in paragraph at lines 3302--3302 \T1/ptm/m/it/10 zDim=1\T1/ptm/m/n/10 , Overfull \hbox (1.29443pt too wide) in paragraph at lines 3302--3302 \T1/ptm/m/it/10 keep- Overfull \hbox (43.4043pt too wide) in paragraph at lines 3302--3302 \T1/ptm/m/it/10 OnGpu=False\T1/pcr/m/n/10 ) [81] Underfull \hbox (badness 10000) in paragraph at lines 3346--3346 \T1/ptm/m/it/10 crange=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3346--3346 \T1/ptm/m/it/10 noisemap=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3346--3346 \T1/ptm/m/it/10 shape=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3385--3385 []\T1/ptm/m/it/10 a\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-rec-tion\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3385--3385 \T1/ptm/m/it/10 block-Size\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3385--3385 \T1/ptm/m/it/10 m\T1/ptm/m/n/10 , \T1/ptm/m/it/10 crange\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3385--3385 \T1/ptm/m/it/10 shape=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3385--3385 \T1/ptm/m/it/10 keep- Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 []\T1/ptm/m/it/10 a\T1/ptm/m/n/10 , \T1/ptm/m/it/10 di-rec-tion\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 block-Size\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 noisemap\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 crange\T1/ptm/m/n/10 , \T1/ptm/m/it/10 mem- Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 Cells\T1/ptm/m/n/10 , \T1/ptm/m/it/10 stack\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 sig\T1/ptm/m/n/10 , \T1/ptm/m/it/10 bs=4\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 cellTable=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 gain- Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 Code=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 shape=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 keep- Underfull \hbox (badness 10000) in paragraph at lines 3421--3421 \T1/ptm/m/it/10 OnGpu=False\T1/ptm/m/n/10 , [82] Underfull \hbox (badness 10000) in paragraph at lines 3502--3502 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3502--3502 \T1/ptm/m/it/10 block-Size\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3502--3502 \T1/ptm/m/it/10 ori-en- Underfull \hbox (badness 10000) in paragraph at lines 3502--3502 \T1/ptm/m/it/10 ta-tion\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3502--3502 \T1/ptm/m/it/10 cores=4\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3502--3502 \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , Overfull \hbox (12.94408pt too wide) in paragraph at lines 3502--3502 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , [83] [84] Underfull \hbox (badness 10000) in paragraph at lines 3644--3644 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , \T1/ptm/m/it/10 bins\T1/ptm/m/n/10 , \T 1/ptm/m/it/10 range\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3644--3644 \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dType= for immediate help. ... l.3826 \begin{Verbatim}[commandchars=\\\{\}] [87] [88] Underfull \hbox (badness 10000) in paragraph at lines 4065--4066 []\T1/pcr/b/n/10 function. For any 1-d vector in this list it will be Underfull \hbox (badness 10000) in paragraph at lines 4068--4069 []\T1/pcr/b/n/10 to mask/remove data as is done with the data block. Underfull \hbox (badness 10000) in paragraph at lines 4074--4075 []\T1/pcr/b/n/10 where True denotes remove of an image at this position. Underfull \hbox (badness 10000) in paragraph at lines 4077--4078 []\T1/pcr/b/n/10 indices is given, the evaluation function is NOT evaluated. Underfull \hbox (badness 10000) in paragraph at lines 4098--4098 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , [89] Underfull \hbox (badness 10000) in paragraph at lines 4166--4166 \T1/ptm/m/it/10 ry-Thresh-old\T1/ptm/m/n/10 , \T1/ptm/m/it/10 sec-ondary- Underfull \hbox (badness 10000) in paragraph at lines 4166--4166 \T1/ptm/m/it/10 Thresh-old\T1/ptm/m/n/10 , \T1/ptm/m/it/10 up-perThresh- Underfull \hbox (badness 10000) in paragraph at lines 4166--4166 \T1/ptm/m/it/10 old\T1/ptm/m/n/10 , \T1/ptm/m/it/10 tag-FirstS-in-gles=0\T1/ptm /m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4166--4166 \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dType= for immediate help. ... l.4295 \item {} \begin{description} Underfull \hbox (badness 5711) in paragraph at lines 4333--4336 []\T1/ptm/m/n/10 the iden-ti-fied pat- [91] Underfull \hbox (badness 10000) in paragraph at lines 4484--4484 []\T1/ptm/m/it/10 shape, selectionList=[-1], Underfull \hbox (badness 10000) in paragraph at lines 4484--4484 \T1/ptm/m/it/10 nCells=1, dType=\T1/ptm/m/n/10 , \T1/ptm/m/it/10 par-al-lel=Tru e\T1/ptm/m/n/10 , [95] [96] Underfull \hbox (badness 10000) in paragraph at lines 5066--5066 []\T1/ptm/m/it/10 functionsToProfile\T1/ptm/m/n/10 , \T1/ptm/m/it/10 val-uesTo- VaryCpu\T1/ptm/m/n/10 , \T1/ptm/m/it/10 val-uesTo- Underfull \hbox (badness 10000) in paragraph at lines 5066--5066 \T1/ptm/m/it/10 VaryGpu=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nRe-peats=None\T1/ ptm/m/n/10 , \T1/ptm/m/it/10 val-uesTo-P-re- Underfull \hbox (badness 10000) in paragraph at lines 5078--5078 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 read-Fun\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 size\T1/ptm/m/n/10 , \T1/ptm/m/it/10 chunk-Size\T1/ptm/m/n /10 , \T1/ptm/m/it/10 *args\T1/ptm/m/n/10 , [97] Overfull \hbox (118.35437pt too wide) in paragraph at lines 5187--5187 []\T1/ptm/m/it/10 asic, Overfull \hbox (110.85449pt too wide) in paragraph at lines 5187--5187 \T1/ptm/m/it/10 in- Overfull \hbox (132.14438pt too wide) in paragraph at lines 5187--5187 \T1/ptm/m/it/10 put_file, Overfull \hbox (115.85449pt too wide) in paragraph at lines 5187--5187 \T1/ptm/m/it/10 out- Overfull \hbox (158.80429pt too wide) in paragraph at lines 5187--5187 \T1/ptm/m/it/10 put_file_name, Overfull \hbox (168.33421pt too wide) in paragraph at lines 5187--5187 \T1/ptm/m/it/10 max_part=None, Overfull \hbox (160.26404pt too wide) in paragraph at lines 5187--5187 \T1/ptm/m/it/10 col_spec=[0]\T1/pcr/m/n/10 ) [98] [99] Overfull \hbox (88.35437pt too wide) in paragraph at lines 5379--5379 []\T1/ptm/m/it/10 asic, Overfull \hbox (80.85449pt too wide) in paragraph at lines 5379--5379 \T1/ptm/m/it/10 in- Overfull \hbox (102.14438pt too wide) in paragraph at lines 5379--5379 \T1/ptm/m/it/10 put_file, Overfull \hbox (85.85449pt too wide) in paragraph at lines 5379--5379 \T1/ptm/m/it/10 out- Overfull \hbox (128.80429pt too wide) in paragraph at lines 5379--5379 \T1/ptm/m/it/10 put_file_name, Overfull \hbox (138.33421pt too wide) in paragraph at lines 5379--5379 \T1/ptm/m/it/10 max_part=None, Overfull \hbox (126.76404pt too wide) in paragraph at lines 5379--5379 \T1/ptm/m/it/10 col_spec=[0], Overfull \hbox (91.75453pt too wide) in paragraph at lines 5379--5379 \T1/ptm/m/it/10 back- Overfull \hbox (138.24399pt too wide) in paragraph at lines 5379--5379 \T1/ptm/m/it/10 ing_store=True\T1/pcr/m/n/10 ) [100] Overfull \hbox (16.35437pt too wide) in paragraph at lines 5610--5610 []\T1/ptm/m/it/10 asic\T1/ptm/m/n/10 , Overfull \hbox (8.85449pt too wide) in paragraph at lines 5610--5610 \T1/ptm/m/it/10 in- Overfull \hbox (42.46434pt too wide) in paragraph at lines 5610--5610 \T1/ptm/m/it/10 put_fname\T1/ptm/m/n/10 , Overfull \hbox (46.35382pt too wide) in paragraph at lines 5610--5610 \T1/ptm/m/it/10 pixel_v_list\T1/ptm/m/n/10 , Overfull \hbox (46.91388pt too wide) in paragraph at lines 5610--5610 \T1/ptm/m/it/10 pixel_u_list\T1/ptm/m/n/10 , Overfull \hbox (55.79376pt too wide) in paragraph at lines 5610--5610 \T1/ptm/m/it/10 mem_cell_list\T1/ptm/m/n/10 , Overfull \hbox (48.67407pt too wide) in paragraph at lines 5610--5610 \T1/ptm/m/it/10 n_processes\T1/ptm/m/n/10 , Overfull \hbox (52.46382pt too wide) in paragraph at lines 5610--5610 \T1/ptm/m/it/10 safety_factor\T1/ptm/m/n/10 , Overfull \hbox (13.85449pt too wide) in paragraph at lines 5610--5610 \T1/ptm/m/it/10 out- Overfull \hbox (42.46434pt too wide) in paragraph at lines 5610--5610 \T1/ptm/m/it/10 put_fname\T1/ptm/m/n/10 , Overfull \hbox (56.3337pt too wide) in paragraph at lines 5610--5610 \T1/ptm/m/it/10 reuse_results\T1/pcr/m/n/10 ) [101] Underfull \hbox (badness 10000) in paragraph at lines 5660--5660 []\T1/ptm/m/it/10 asic\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5660--5660 \T1/ptm/m/it/10 in- Overfull \hbox (52.3242pt too wide) in paragraph at lines 5660--5660 \T1/ptm/m/it/10 put_fname=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5660--5660 \T1/ptm/m/it/10 out- Overfull \hbox (52.3242pt too wide) in paragraph at lines 5660--5660 \T1/ptm/m/it/10 put_fname=None\T1/ptm/m/n/10 , Overfull \hbox (61.21382pt too wide) in paragraph at lines 5660--5660 \T1/ptm/m/it/10 safety_factor=1000\T1/ptm/m/n/10 , Overfull \hbox (53.06406pt too wide) in paragraph at lines 5660--5660 \T1/ptm/m/it/10 plot_prefix=None\T1/ptm/m/n/10 , Overfull \hbox (42.33408pt too wide) in paragraph at lines 5660--5660 \T1/ptm/m/it/10 plot_dir=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5660--5660 \T1/ptm/m/it/10 cre- Overfull \hbox (47.13387pt too wide) in paragraph at lines 5660--5660 \T1/ptm/m/it/10 ate_plots=False\T1/ptm/m/n/10 , Overfull \hbox (51.12395pt too wide) in paragraph at lines 5660--5660 \T1/ptm/m/it/10 log_level='info'\T1/pcr/m/n/10 ) Overfull \hbox (30.1644pt too wide) in paragraph at lines 5762--5762 []\T1/ptm/m/it/10 list_to_check\T1/ptm/m/n/10 , Overfull \hbox (32.12477pt too wide) in paragraph at lines 5768--5768 []\T1/ptm/m/it/10 file_name\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 5774--5774 []\T1/ptm/m/it/10 asic\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Underfull \hbox (badness 10000) in paragraph at lines 5774--5774 \T1/ptm/m/it/10 put_file\T1/ptm/m/n/10 , Overfull \hbox (5.8542pt too wide) in paragraph at lines 5774--5774 \T1/ptm/m/it/10 pixel_v_list\T1/ptm/m/n/10 , Overfull \hbox (6.41426pt too wide) in paragraph at lines 5774--5774 \T1/ptm/m/it/10 pixel_u_list\T1/ptm/m/n/10 , Overfull \hbox (15.29414pt too wide) in paragraph at lines 5774--5774 \T1/ptm/m/it/10 mem_cell_list\T1/ptm/m/n/10 , Overfull \hbox (15.69417pt too wide) in paragraph at lines 5774--5774 \T1/ptm/m/it/10 safety_factor\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 5780--5780 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , [102] Overfull \hbox (23.8542pt too wide) in paragraph at lines 5786--5786 []\T1/ptm/m/it/10 pixel_v_list\T1/ptm/m/n/10 , Overfull \hbox (24.41426pt too wide) in paragraph at lines 5786--5786 \T1/ptm/m/it/10 pixel_u_list\T1/ptm/m/n/10 , Overfull \hbox (33.29414pt too wide) in paragraph at lines 5786--5786 \T1/ptm/m/it/10 mem_cell_list\T1/ptm/m/n/10 , Overfull \hbox (35.32455pt too wide) in paragraph at lines 5786--5786 \T1/ptm/m/it/10 n_gain_stages\T1/ptm/m/n/10 , Overfull \hbox (22.74437pt too wide) in paragraph at lines 5786--5786 \T1/ptm/m/it/10 n_intervals\T1/ptm/m/n/10 , Overfull \hbox (71.82417pt too wide) in paragraph at lines 5786--5786 \T1/ptm/m/it/10 n_diff_changes_stored\T1/pcr/m/n/10 ) Overfull \hbox (14.12477pt too wide) in paragraph at lines 5798--5798 []\T1/ptm/m/it/10 file_name\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 5842--5842 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5842--5842 \T1/ptm/m/it/10 pro- Overfull \hbox (18.2037pt too wide) in paragraph at lines 5842--5842 \T1/ptm/m/it/10 cess_results\T1/ptm/m/n/10 , Overfull \hbox (23.78394pt too wide) in paragraph at lines 5842--5842 \T1/ptm/m/it/10 asics=array([ Underfull \hbox (badness 10000) in paragraph at lines 5842--5842 \T1/ptm/m/it/10 16])\T1/ptm/m/n/10 , Overfull \hbox (7.55418pt too wide) in paragraph at lines 5842--5842 \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , Overfull \hbox (24.94408pt too wide) in paragraph at lines 5842--5842 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , Overfull \hbox (12.26428pt too wide) in paragraph at lines 5842--5842 \T1/ptm/m/it/10 **kwargs\T1/pcr/m/n/10 ) [103] [104] [105] Underfull \hbox (badness 10000) in paragraph at lines 6114--6116 []\T1/ptm/m/n/10 Usually the Underfull \hbox (badness 10000) in paragraph at lines 6154--6162 []\T1/ptm/m/n/10 __init__(self,FileName) Get-N-u-mIm-ages(self) def Get-Data(se lf,Index, Underfull \hbox (badness 10000) in paragraph at lines 6154--6162 \T1/ptm/m/n/10 DataType='''',Pos=None,Size=None): Get-Pixel(self,Index,Position ) Get-H-eader(self,Index) Get-Static- Overfull \hbox (4.81062pt too wide) in paragraph at lines 6154--6162 \T1/ptm/m/n/10 Header(self,Index) WriteIm-age (self,Header,Data,Append=1,DataTy pe='''',WriteAsUnsigened=0,ByteOrder='''') [106] Underfull \hbox (badness 10000) in paragraph at lines 6248--6248 []\T1/ptm/m/it/10 FileNameOrFileDescriptor\T1/ptm/m/n/10 , \T1/ptm/m/it/10 fast - [107] [108] [109] [110] [111] Underfull \hbox (badness 10000) in paragraph at lines 6794--6794 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 path='/stream'\T1/pt m/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6881--6881 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6881--6881 \T1/ptm/m/it/10 read-Fun\T1/ptm/m/n/10 , Overfull \hbox (9.66417pt too wide) in paragraph at lines 6881--6881 \T1/ptm/m/it/10 filesRange=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6881--6881 \T1/ptm/m/it/10 *args\T1/ptm/m/n/10 , [112] [113] [114] Underfull \hbox (badness 10000) in paragraph at lines 7232--7234 []\T1/ptm/m/n/10 Usually the [115] [116] [117] [118] Underfull \hbox (badness 10000) in paragraph at lines 7697--7698 []\T1/pcr/b/n/10 will be passed to the matplotlib fill_between() function. [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] Underfull \hbox (badness 10000) in paragraph at lines 11062--11062 []\T1/ptm/m/it/10 host=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 port=None\T1/ptm/m/ n/10 , \T1/ptm/m/it/10 read-Han- [135] Underfull \hbox (badness 10000) in paragraph at lines 11082--11082 []\T1/ptm/m/it/10 host=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 port=None\T1/ptm/m/ n/10 , \T1/ptm/m/it/10 read-Han- [136] [137] [138] Chapter 5. [139] [140] Overfull \hbox (18.6225pt too wide) in paragraph at lines 11278--11279 []\T1/pcr/m/n/10 XFELDetAna.algorithms.correct_common_mode\T1/ptm/m/n/10 , Overfull \hbox (54.6225pt too wide) in paragraph at lines 11280--11281 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.calc_offset_and_noise\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 11281--11282 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.correct_common_mode\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 11282--11283 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.correct_offset\T1/ptm/m/n/10 , Overfull \hbox (18.6225pt too wide) in paragraph at lines 11283--11284 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.correct_relgain\T1/ptm/m/n/10 , Overfull \hbox (102.6225pt too wide) in paragraph at lines 11285--11286 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.calc_offset_and_noise\T1/ptm /m/n/10 , Overfull \hbox (90.6225pt too wide) in paragraph at lines 11286--11287 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m /n/10 , Overfull \hbox (138.6225pt too wide) in paragraph at lines 11287--11288 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.correct_common_mode_batcher\ T1/ptm/m/n/10 , Overfull \hbox (78.6225pt too wide) in paragraph at lines 11288--11289 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.simple_correction\T1/ptm/m/n /10 , Overfull \hbox (48.6225pt too wide) in paragraph at lines 11289--11290 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.split_events\T1/ptm/m/n/10 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 11290--11291 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.statistics\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 11291--11292 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.util\T1/ptm/m/n/10 , Overfull \hbox (60.6225pt too wide) in paragraph at lines 11292--11293 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.xfelgpukernels\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 11293--11294 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.split_events\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 11294--11295 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.statistics\T1/ptm/m/n/10 , Overfull \hbox (18.6225pt too wide) in paragraph at lines 11296--11297 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.xfelcalgputools\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 11311--11312 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms\T1/ptm/m/n/10 , Overfull \hbox (84.6225pt too wide) in paragraph at lines 11312--11313 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms.gather\T1/ptm/m/ n/10 , Overfull \hbox (90.6225pt too wide) in paragraph at lines 11313--11314 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms.process\T1/ptm/m /n/10 , Overfull \hbox (72.6225pt too wide) in paragraph at lines 11314--11315 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms.util\T1/ptm/m/n/ 10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 11316--11317 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.gpu.kernels\T1/ptm/m/n/10 , Overfull \hbox (90.6225pt too wide) in paragraph at lines 11317--11318 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.gpu.kernels.threshold_gain\T1/ptm/m /n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 11318--11319 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.gpu.threshold_gain\T1/ptm/m/n/10 , Overfull \hbox (18.6225pt too wide) in paragraph at lines 11319--11320 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.merge_dynrange\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 11325--11326 []\T1/pcr/m/n/10 XFELDetAna.detectors.edf_data.EdfFile\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 11326--11327 []\T1/pcr/m/n/10 XFELDetAna.detectors.edf_data.loadedf\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 11327--11328 []\T1/pcr/m/n/10 XFELDetAna.detectors.edf_data.reader\T1/ptm/m/n/10 , [141] Underfull \hbox (badness 10000) in paragraph at lines 11332--11333 []\T1/pcr/m/n/10 XFELDetAna.detectors.fastccd.readerh5\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 11334--11335 []\T1/pcr/m/n/10 XFELDetAna.detectors.generator.reader\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 11336--11337 []\T1/pcr/m/n/10 XFELDetAna.detectors.jungfrau.jf_chunk_reader\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 11337--11338 []\T1/pcr/m/n/10 XFELDetAna.detectors.jungfrau.reader\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 11338--11339 []\T1/pcr/m/n/10 XFELDetAna.detectors.jungfrau.readerPSI\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 11343--11344 []\T1/pcr/m/n/10 XFELDetAna.detectors.pnccd.frm6reader\T1/ptm/m/n/10 , [142] (./src.ind Underfull \hbox (badness 10000) in paragraph at lines 5--6 []\T1/ptm/m/n/10 _axisFuncWrapper() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 6--7 []\T1/ptm/m/n/10 _decorateModule() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 7--8 []\T1/ptm/m/n/10 _fill_between_steps() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 8--10 []\T1/ptm/m/n/10 _gpuCommonMode() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 8--10 \T1/ptm/m/n/10 tAna.algorithms.gpu.correct_common_mode), Underfull \hbox (badness 10000) in paragraph at lines 10--12 []\T1/ptm/m/n/10 _gpuCommonMode2D() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 10--12 \T1/ptm/m/n/10 tAna.algorithms.gpu.correct_common_mode), Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/ptm/m/n/10 _gpuCommonMode3D() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 12--14 \T1/ptm/m/n/10 tAna.algorithms.gpu.correct_common_mode), Underfull \hbox (badness 10000) in paragraph at lines 21--22 []\T1/ptm/m/n/10 add_can_expand (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 21--22 \T1/ptm/m/n/10 tAna.util.knumpy.krbMaskedArray at-tribute), Underfull \hbox (badness 10000) in paragraph at lines 24--25 []\T1/ptm/m/n/10 add_newdoc_ufunc() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 26--28 []\T1/ptm/m/n/10 AgipdDynamicRangeGatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 26--28 \T1/ptm/m/n/10 (class in XFELDe- Overfull \hbox (8.64053pt too wide) in paragraph at lines 26--28 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.gather), Underfull \hbox (badness 10000) in paragraph at lines 28--30 []\T1/ptm/m/n/10 AgipdDynamicRangeSingleAsic (class in XFELDe- Overfull \hbox (13.69037pt too wide) in paragraph at lines 28--30 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process), Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/ptm/m/n/10 AgipdMergeDynamicRange (class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 33--35 []\T1/ptm/m/n/10 algorithmDescription() (XFELDe- Overfull \hbox (3.71994pt too wide) in paragraph at lines 33--35 \T1/ptm/m/n/10 tAna.algorithms.histogram.HistogramCalculator Underfull \hbox (badness 10000) in paragraph at lines 35--37 []\T1/ptm/m/n/10 algorithmDescription() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 35--37 \T1/ptm/m/n/10 tAna.algorithms.split_event.PatternClassifier Underfull \hbox (badness 10000) in paragraph at lines 37--38 []\T1/ptm/m/n/10 algorithmDescription() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 37--38 \T1/ptm/m/n/10 tAna.core.mapcalculator.MapCalculator Underfull \hbox (badness 10000) in paragraph at lines 38--40 []\T1/ptm/m/n/10 algorithmSpecificSettings() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 38--40 \T1/ptm/m/n/10 tAna.core.mapcalculator.MapCalculator Underfull \hbox (badness 10000) in paragraph at lines 42--43 []\T1/ptm/m/n/10 ALLOW_THREADS() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 47--48 []\T1/ptm/m/n/10 AND (XFELDe-tAna.algorithms.selection.DataSelector Underfull \hbox (badness 10000) in paragraph at lines 51--52 []\T1/ptm/m/n/10 apply_along_axis() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 52--53 []\T1/ptm/m/n/10 apply_over_axes() (in mod-ule XFELDe- [143] Underfull \hbox (badness 10000) in paragraph at lines 76--77 []\T1/ptm/m/n/10 asarray_chkfinite() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 77--78 []\T1/ptm/m/n/10 ascontiguousarray() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 89--90 []\T1/ptm/m/n/10 axis_scales (XFELDe-tAna.util.knumpy.krbarray at- Underfull \hbox (badness 10000) in paragraph at lines 95--96 []\T1/ptm/m/n/10 badPixelMaskFromNoiseAndOffset() (in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 99--100 []\T1/ptm/m/n/10 baseArrayType (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 99--100 \T1/ptm/m/n/10 tAna.util.knumpy.krbMaskedArray at-tribute), Underfull \hbox (badness 10000) in paragraph at lines 100--102 []\T1/ptm/m/n/10 biggest_entries() (in mod-ule XFELDe- Overfull \hbox (13.69037pt too wide) in paragraph at lines 100--102 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process), Overfull \hbox (2.81924pt too wide) in paragraph at lines 109--110 []\T1/ptm/m/n/10 BLOCK (XFELDe-tAna.algorithms.selection.DataSelector Underfull \hbox (badness 10000) in paragraph at lines 111--112 []\T1/ptm/m/n/10 broadcast_arrays() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 120--122 []\T1/ptm/m/n/10 calc_gain_median() (XFELDe- Overfull \hbox (63.67963pt too wide) in paragraph at lines 120--122 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.ProcessDrscs Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/ptm/m/n/10 calc_gain_regions() (XFELDe- Overfull \hbox (63.67963pt too wide) in paragraph at lines 122--124 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.ProcessDrscs Underfull \hbox (badness 10000) in paragraph at lines 124--126 []\T1/ptm/m/n/10 calc_thresholds() (XFELDe- Overfull \hbox (63.67963pt too wide) in paragraph at lines 124--126 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.ProcessDrscs Underfull \hbox (badness 10000) in paragraph at lines 126--128 []\T1/ptm/m/n/10 calculate_mapped_asic() (XFELDe- Overfull \hbox (163.06902pt too wide) in paragraph at lines 126--128 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRange GatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/ptm/m/n/10 calculate_mapped_asic() (XFELDe- Overfull \hbox (141.45908pt too wide) in paragraph at lines 128--130 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRang eSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 135--137 []\T1/ptm/m/n/10 check_file_exists() (in mod-ule XFELDe- Overfull \hbox (13.69037pt too wide) in paragraph at lines 135--137 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process), Underfull \hbox (badness 10000) in paragraph at lines 137--139 []\T1/ptm/m/n/10 check_file_exists() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 137--139 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.util), [144] Underfull \hbox (badness 10000) in paragraph at lines 139--141 []\T1/ptm/m/n/10 check_file_number() (XFELDe- Overfull \hbox (163.06902pt too wide) in paragraph at lines 139--141 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRange GatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 141--143 []\T1/ptm/m/n/10 check_file_number() (XFELDe- Overfull \hbox (141.45908pt too wide) in paragraph at lines 141--143 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRang eSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 143--145 []\T1/ptm/m/n/10 check_for_single_index() (XFELDe- Overfull \hbox (163.06902pt too wide) in paragraph at lines 143--145 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRange GatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 145--147 []\T1/ptm/m/n/10 check_for_single_index() (XFELDe- Overfull \hbox (141.45908pt too wide) in paragraph at lines 145--147 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRang eSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 147--149 []\T1/ptm/m/n/10 check_lists_continous() (XFELDe- Overfull \hbox (63.67963pt too wide) in paragraph at lines 147--149 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.ProcessDrscs Underfull \hbox (badness 10000) in paragraph at lines 149--151 []\T1/ptm/m/n/10 check_output_file_exist() (XFELDe- Overfull \hbox (163.06902pt too wide) in paragraph at lines 149--151 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRange GatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 151--153 []\T1/ptm/m/n/10 check_output_file_exist() (XFELDe- Overfull \hbox (141.45908pt too wide) in paragraph at lines 151--153 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRang eSingleAsic Overfull \hbox (28.38911pt too wide) in paragraph at lines 155--156 []\T1/ptm/m/n/10 classify() (XFELDe-tAna.algorithms.split_event.PatternClassifi er Underfull \hbox (badness 10000) in paragraph at lines 158--159 []\T1/ptm/m/n/10 close() (XFELDe-tAna.util.p2pInterface.P2pInterface Underfull \hbox (badness 10000) in paragraph at lines 159--161 []\T1/ptm/m/n/10 collect_incoming_data() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 163--165 []\T1/ptm/m/n/10 commonmode3d (in mod-ule XFELDe- Overfull \hbox (26.93044pt too wide) in paragraph at lines 163--165 \T1/ptm/m/n/10 tAna.algorithms.gpu.kernels.correct_common_mode), Underfull \hbox (badness 10000) in paragraph at lines 165--167 []\T1/ptm/m/n/10 commonmode3dBitonic (in mod-ule XFELDe- Overfull \hbox (26.93044pt too wide) in paragraph at lines 165--167 \T1/ptm/m/n/10 tAna.algorithms.gpu.kernels.correct_common_mode), Underfull \hbox (badness 10000) in paragraph at lines 167--169 []\T1/ptm/m/n/10 commonmode3dBitonicZ1 (in mod-ule XFELDe- Overfull \hbox (26.93044pt too wide) in paragraph at lines 167--169 \T1/ptm/m/n/10 tAna.algorithms.gpu.kernels.correct_common_mode), Underfull \hbox (badness 10000) in paragraph at lines 169--171 []\T1/ptm/m/n/10 commonmode3dNetwork() (in mod-ule XFELDe- Overfull \hbox (61.3601pt too wide) in paragraph at lines 169--171 \T1/ptm/m/n/10 tAna.algorithms.gpu.kernels.correct_common_mode_batcher), Underfull \hbox (badness 10000) in paragraph at lines 171--172 []\T1/ptm/m/n/10 CommonModeCorrection (class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 171--172 \T1/ptm/m/n/10 tAna.algorithms.correct_common_mode), Underfull \hbox (badness 10000) in paragraph at lines 172--173 []\T1/ptm/m/n/10 compare_chararrays() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 174--175 []\T1/ptm/m/n/10 ComplexWarning() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 179--180 []\T1/ptm/m/n/10 constantDescription() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 179--180 \T1/ptm/m/n/10 tAna.core.mapcalculator.MapCalculator Overfull \hbox (114.4592pt too wide) in paragraph at lines 186--188 []\T1/ptm/m/n/10 correct() (XFELDe-tAna.algorithms.correct_common_mode.CommonMo deCorrection Overfull \hbox (16.03978pt too wide) in paragraph at lines 188--189 []\T1/ptm/m/n/10 correct() (XFELDe-tAna.algorithms.unitary.UnitaryCalculator Underfull \hbox (badness 10000) in paragraph at lines 192--193 []\T1/ptm/m/n/10 count_n_files() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 200--202 []\T1/ptm/m/n/10 current_list_to_ndarray() (XFELDe- Overfull \hbox (78.03033pt too wide) in paragraph at lines 200--202 \T1/ptm/m/n/10 tAna.detectors.agipd.merge_dynrange.AgipdMergeDynamicRange Underfull \hbox (badness 10000) in paragraph at lines 210--211 []\T1/ptm/m/n/10 dataReceiver() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 211--212 []\T1/ptm/m/n/10 DataSelector (class in XFELDe- [145] Underfull \hbox (badness 10000) in paragraph at lines 213--214 []\T1/ptm/m/n/10 datetime_as_string() (in mod-ule XFELDe- Overfull \hbox (3.15033pt too wide) in paragraph at lines 215--216 []\T1/ptm/m/n/10 debug() (XFELDe-tAna.core.mapcalculator.MapCalculator Underfull \hbox (badness 10000) in paragraph at lines 220--221 []\T1/ptm/m/n/10 deprecate_with_doc() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 221--223 []\T1/ptm/m/n/10 detect_saturation() (XFELDe- Overfull \hbox (63.67963pt too wide) in paragraph at lines 221--223 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.ProcessDrscs Underfull \hbox (badness 10000) in paragraph at lines 223--225 []\T1/ptm/m/n/10 detect_saturation2() (XFELDe- Overfull \hbox (63.67963pt too wide) in paragraph at lines 223--225 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.ProcessDrscs Underfull \hbox (badness 10000) in paragraph at lines 225--227 []\T1/ptm/m/n/10 determine_asic_border() (XFELDe- Overfull \hbox (163.06902pt too wide) in paragraph at lines 225--227 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRange GatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 227--229 []\T1/ptm/m/n/10 determine_asic_border() (XFELDe- Overfull \hbox (141.45908pt too wide) in paragraph at lines 227--229 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRang eSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 231--232 []\T1/ptm/m/n/10 diag_indices_from() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 246--247 []\T1/ptm/m/n/10 EdfBzip2File (class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 247--248 []\T1/ptm/m/n/10 EdfFile (class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 248--249 []\T1/ptm/m/n/10 EdfGzipFile (class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 256--257 []\T1/ptm/m/n/10 enabledClasses() (XFELDe-tAna.core.profiler.Profiler Underfull \hbox (badness 10000) in paragraph at lines 257--258 []\T1/ptm/m/n/10 enablePrettyPlot() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 259--260 []\T1/ptm/m/n/10 enforce_setting (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 259--260 \T1/ptm/m/n/10 tAna.util.knumpy.krbMaskedArray at-tribute), Underfull \hbox (badness 10000) in paragraph at lines 260--261 []\T1/ptm/m/n/10 enforce_stackable (XFELDe-tAna.util.knumpy.krbarray Underfull \hbox (badness 10000) in paragraph at lines 261--262 []\T1/ptm/m/n/10 enforce_stackable (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 261--262 \T1/ptm/m/n/10 tAna.util.knumpy.krbMaskedArray at-tribute), Underfull \hbox (badness 10000) in paragraph at lines 264--265 []\T1/ptm/m/n/10 ERR_DEFAULT() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 272--274 []\T1/ptm/m/n/10 exec_process() (in mod-ule XFELDe- Overfull \hbox (13.69037pt too wide) in paragraph at lines 272--274 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process), Underfull \hbox (badness 10000) in paragraph at lines 279--281 []\T1/ptm/m/n/10 extend_metadata() (XFELDe- Overfull \hbox (163.06902pt too wide) in paragraph at lines 279--281 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRange GatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 281--283 []\T1/ptm/m/n/10 extend_metadata() (XFELDe- Overfull \hbox (141.45908pt too wide) in paragraph at lines 281--283 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRang eSingleAsic [146] Underfull \hbox (badness 10000) in paragraph at lines 290--291 []\T1/ptm/m/n/10 fastCopyAndTranspose() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 293--295 []\T1/ptm/m/n/10 fileHeaderFormat (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 293--295 \T1/ptm/m/n/10 tAna.detectors.pnccd.frm6reader.Frms6Reader Underfull \hbox (badness 10000) in paragraph at lines 295--297 []\T1/ptm/m/n/10 fileHeaderSizeInBytes (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 295--297 \T1/ptm/m/n/10 tAna.detectors.pnccd.frm6reader.Frms6Reader Underfull \hbox (badness 10000) in paragraph at lines 297--299 []\T1/ptm/m/n/10 fileHeaderStruct (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 297--299 \T1/ptm/m/n/10 tAna.detectors.pnccd.frm6reader.Frms6Reader Overfull \hbox (89.79906pt too wide) in paragraph at lines 299--301 []\T1/ptm/m/n/10 fill() (XFELDe-tAna.algorithms.gpu.calc_offset_and_noise.GpuOf fsetNoiseCalc Overfull \hbox (23.38934pt too wide) in paragraph at lines 301--302 []\T1/ptm/m/n/10 fill() (XFELDe-tAna.algorithms.histogram.HistogramCalculator Underfull \hbox (badness 10000) in paragraph at lines 303--305 []\T1/ptm/m/n/10 fillup_frame_loss() (XFELDe- Overfull \hbox (163.06902pt too wide) in paragraph at lines 303--305 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRange GatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 305--307 []\T1/ptm/m/n/10 fillup_frame_loss() (XFELDe- Overfull \hbox (141.45908pt too wide) in paragraph at lines 305--307 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRang eSingleAsic Overfull \hbox (5.04953pt too wide) in paragraph at lines 307--308 []\T1/ptm/m/n/10 filter() (XFELDe-tAna.algorithms.selection.ThresholdFilter Underfull \hbox (badness 10000) in paragraph at lines 309--310 []\T1/ptm/m/n/10 find_common_type() (in mod-ule XFELDe- Overfull \hbox (102.22891pt too wide) in paragraph at lines 311--313 []\T1/ptm/m/n/10 fit_data() (XFELDe-tAna.detectors.agipd.dyrange_algorithms.pro cess.ProcessDrscs Overfull \hbox (102.73903pt too wide) in paragraph at lines 313--315 []\T1/ptm/m/n/10 fit_gain() (XFELDe-tAna.detectors.agipd.dyrange_algorithms.pro cess.ProcessDrscs Underfull \hbox (badness 10000) in paragraph at lines 329--330 []\T1/ptm/m/n/10 found_terminator() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 330--331 []\T1/ptm/m/n/10 FPE_DIVIDEBYZERO() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 332--333 []\T1/ptm/m/n/10 FPE_OVERFLOW() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 333--334 []\T1/ptm/m/n/10 FPE_UNDERFLOW() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 334--336 []\T1/ptm/m/n/10 frameHeaderFormat (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 334--336 \T1/ptm/m/n/10 tAna.detectors.pnccd.frm6reader.Frms6Reader Underfull \hbox (badness 10000) in paragraph at lines 336--338 []\T1/ptm/m/n/10 frameHeaderSizeInBytes (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 336--338 \T1/ptm/m/n/10 tAna.detectors.pnccd.frm6reader.Frms6Reader Underfull \hbox (badness 10000) in paragraph at lines 338--340 []\T1/ptm/m/n/10 frameHeaderStruct (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 338--340 \T1/ptm/m/n/10 tAna.detectors.pnccd.frm6reader.Frms6Reader Underfull \hbox (badness 10000) in paragraph at lines 341--342 []\T1/ptm/m/n/10 Frms6Reader (class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 355--356 []\T1/ptm/m/n/10 gainMultiMapsToSingle() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 357--359 []\T1/ptm/m/n/10 generate_process_lists() (XFELDe- Overfull \hbox (71.30946pt too wide) in paragraph at lines 357--359 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.ParallelProcess Underfull \hbox (badness 10000) in paragraph at lines 359--361 []\T1/ptm/m/n/10 generateNetwork() (in mod-ule XFELDe- Overfull \hbox (61.3601pt too wide) in paragraph at lines 359--361 \T1/ptm/m/n/10 tAna.algorithms.gpu.kernels.correct_common_mode_batcher), Underfull \hbox (badness 10000) in paragraph at lines 361--362 []\T1/ptm/m/n/10 generates_report() (in mod-ule XFELDe- Overfull \hbox (98.9194pt too wide) in paragraph at lines 364--366 []\T1/ptm/m/n/10 get() (XFELDe-tAna.algorithms.correct_common_mode.CommonModeCo rrection [147] Overfull \hbox (90.89917pt too wide) in paragraph at lines 366--368 []\T1/ptm/m/n/10 get() (XFELDe-tAna.algorithms.gpu.calc_offset_and_noise.GpuOff setNoiseCalc Overfull \hbox (24.48946pt too wide) in paragraph at lines 368--369 []\T1/ptm/m/n/10 get() (XFELDe-tAna.algorithms.histogram.HistogramCalculator Underfull \hbox (badness 10000) in paragraph at lines 370--372 []\T1/ptm/m/n/10 get_charges() (XFELDe- Overfull \hbox (163.06902pt too wide) in paragraph at lines 370--372 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRange GatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 372--374 []\T1/ptm/m/n/10 get_charges() (XFELDe- Overfull \hbox (141.45908pt too wide) in paragraph at lines 372--374 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRang eSingleAsic Overfull \hbox (205.4983pt too wide) in paragraph at lines 374--376 []\T1/ptm/m/n/10 get_data() (XFELDe-tAna.detectors.agipd.dyrange_algorithms.gat her.AgipdDynamicRangeGatherSingleAsic Overfull \hbox (183.88837pt too wide) in paragraph at lines 376--378 []\T1/ptm/m/n/10 get_data() (XFELDe-tAna.detectors.agipd.dyrange_algorithms.pro cess.AgipdDynamicRangeSingleAsic Overfull \hbox (113.73875pt too wide) in paragraph at lines 378--380 []\T1/ptm/m/n/10 get_data() (XFELDe-tAna.detectors.agipd.dyrange_algorithms.pro cess.ParallelProcess Overfull \hbox (205.5082pt too wide) in paragraph at lines 380--382 []\T1/ptm/m/n/10 get_files() (XFELDe-tAna.detectors.agipd.dyrange_algorithms.ga ther.AgipdDynamicRangeGatherSingleAsic Overfull \hbox (183.89825pt too wide) in paragraph at lines 382--384 []\T1/ptm/m/n/10 get_files() (XFELDe-tAna.detectors.agipd.dyrange_algorithms.pr ocess.AgipdDynamicRangeSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 384--386 []\T1/ptm/m/n/10 get_frame_loss_indices() (XFELDe- Overfull \hbox (163.06902pt too wide) in paragraph at lines 384--386 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRange GatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 386--388 []\T1/ptm/m/n/10 get_frame_loss_indices() (XFELDe- Overfull \hbox (141.45908pt too wide) in paragraph at lines 386--388 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRang eSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 389--391 []\T1/ptm/m/n/10 get_metadata() (XFELDe- Overfull \hbox (163.06902pt too wide) in paragraph at lines 389--391 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRange GatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 391--393 []\T1/ptm/m/n/10 get_metadata() (XFELDe- Overfull \hbox (141.45908pt too wide) in paragraph at lines 391--393 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRang eSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 394--395 []\T1/ptm/m/n/10 get_printoptions() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 396--397 []\T1/ptm/m/n/10 get_respects_scales (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 396--397 \T1/ptm/m/n/10 tAna.util.knumpy.krbMaskedArray at-tribute), Underfull \hbox (badness 10000) in paragraph at lines 397--399 []\T1/ptm/m/n/10 get_tmp_metadata() (XFELDe- Overfull \hbox (163.06902pt too wide) in paragraph at lines 397--399 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRange GatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 399--401 []\T1/ptm/m/n/10 get_tmp_metadata() (XFELDe- Overfull \hbox (141.45908pt too wide) in paragraph at lines 399--401 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRang eSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 402--403 []\T1/ptm/m/n/10 getCoordinatesForIndices() (XFELDe- Overfull \hbox (11.95987pt too wide) in paragraph at lines 403--404 []\T1/ptm/m/n/10 GetData() (XFELDe-tAna.detectors.edf_data.EdfFile.EdfFile Underfull \hbox (badness 10000) in paragraph at lines 404--406 []\T1/ptm/m/n/10 getDataShape() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 404--406 \T1/ptm/m/n/10 tAna.detectors.pnccd.frm6reader.Frms6Reader Underfull \hbox (badness 10000) in paragraph at lines 406--407 []\T1/ptm/m/n/10 getDataSize() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 407--408 []\T1/ptm/m/n/10 getDataSize() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 408--409 []\T1/ptm/m/n/10 getDataSize() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 409--410 []\T1/ptm/m/n/10 getDataSize() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 410--411 []\T1/ptm/m/n/10 getDataSize() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 411--412 []\T1/ptm/m/n/10 getDataSize() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 412--413 []\T1/ptm/m/n/10 getDataSize() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 413--414 []\T1/ptm/m/n/10 getDataSize() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 414--415 []\T1/ptm/m/n/10 getDataSize() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 415--416 []\T1/ptm/m/n/10 getDataSize() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 416--417 []\T1/ptm/m/n/10 getDataSize() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 417--418 []\T1/ptm/m/n/10 GetDefaultNumpyType() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 418--420 []\T1/ptm/m/n/10 GetDefaultNumpyType() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 418--420 \T1/ptm/m/n/10 tAna.detectors.edf_data.EdfFile.EdfFile Underfull \hbox (badness 10000) in paragraph at lines 423--425 []\T1/ptm/m/n/10 getFileHeader() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 423--425 \T1/ptm/m/n/10 tAna.detectors.pnccd.frm6reader.Frms6Reader Underfull \hbox (badness 10000) in paragraph at lines 425--426 []\T1/ptm/m/n/10 getFormattedLog() (XFELDe-tAna.core.profiler.Profiler Underfull \hbox (badness 10000) in paragraph at lines 427--429 []\T1/ptm/m/n/10 getFrameHeaders() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 427--429 \T1/ptm/m/n/10 tAna.detectors.pnccd.frm6reader.Frms6Reader Underfull \hbox (badness 10000) in paragraph at lines 429--431 []\T1/ptm/m/n/10 getFrameSizeInBytes() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 429--431 \T1/ptm/m/n/10 tAna.detectors.pnccd.frm6reader.Frms6Reader Underfull \hbox (badness 10000) in paragraph at lines 431--432 []\T1/ptm/m/n/10 getGPUInfo() (XFELDe-tAna.core.profiler.Profiler Underfull \hbox (badness 10000) in paragraph at lines 432--433 []\T1/ptm/m/n/10 getHardwareInfo() (XFELDe-tAna.core.profiler.Profiler Underfull \hbox (badness 10000) in paragraph at lines 433--434 []\T1/ptm/m/n/10 GetHeader() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 433--434 \T1/ptm/m/n/10 tAna.detectors.edf_data.EdfFile.EdfFile [148] Underfull \hbox (badness 10000) in paragraph at lines 434--435 []\T1/ptm/m/n/10 getMaxEntry() (XFELDe-tAna.core.profiler.Profiler Underfull \hbox (badness 10000) in paragraph at lines 435--436 []\T1/ptm/m/n/10 getMinEntry() (XFELDe-tAna.core.profiler.Profiler Overfull \hbox (114.22887pt too wide) in paragraph at lines 436--438 []\T1/ptm/m/n/10 getNoise() (XFELDe-tAna.algorithms.gpu.calc_offset_and_noise.G puOffsetNoiseCalc Underfull \hbox (badness 10000) in paragraph at lines 438--439 []\T1/ptm/m/n/10 GetNumImages() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 438--439 \T1/ptm/m/n/10 tAna.detectors.edf_data.EdfFile.EdfFile Overfull \hbox (115.63878pt too wide) in paragraph at lines 439--441 []\T1/ptm/m/n/10 getOffset() (XFELDe-tAna.algorithms.gpu.calc_offset_and_noise. GpuOffsetNoiseCalc Underfull \hbox (badness 10000) in paragraph at lines 441--443 []\T1/ptm/m/n/10 getPatternStats() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 441--443 \T1/ptm/m/n/10 tAna.algorithms.split_event.PatternClassifier Overfull \hbox (13.48988pt too wide) in paragraph at lines 443--444 []\T1/ptm/m/n/10 GetPixel() (XFELDe-tAna.detectors.edf_data.EdfFile.EdfFile Underfull \hbox (badness 10000) in paragraph at lines 444--445 []\T1/ptm/m/n/10 GetRegion() (in mod-ule XFELDe- Overfull \hbox (15.56999pt too wide) in paragraph at lines 445--446 []\T1/ptm/m/n/10 getShape() (XFELDe-tAna.core.mapcalculator.MapCalculator Underfull \hbox (badness 10000) in paragraph at lines 446--447 []\T1/ptm/m/n/10 GetStaticHeader() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 446--447 \T1/ptm/m/n/10 tAna.detectors.edf_data.EdfFile.EdfFile Underfull \hbox (badness 10000) in paragraph at lines 447--449 []\T1/ptm/m/n/10 GpuOffsetNoiseCalc (class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 447--449 \T1/ptm/m/n/10 tAna.algorithms.gpu.calc_offset_and_noise), Underfull \hbox (badness 10000) in paragraph at lines 456--457 []\T1/ptm/m/n/10 handle_accept() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 456--457 \T1/ptm/m/n/10 tAna.util.p2pInterface.AsyncServer method), Underfull \hbox (badness 10000) in paragraph at lines 460--461 []\T1/ptm/m/n/10 HistogramCalculator (class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 463--464 []\T1/ptm/m/n/10 histSimplePlot() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 464--465 []\T1/ptm/m/n/10 histWithStats() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 475--476 []\T1/ptm/m/n/10 Image (class in XFELDe- Overfull \hbox (6.85927pt too wide) in paragraph at lines 476--477 []\T1/ptm/m/n/10 IMAGES (XFELDe-tAna.algorithms.selection.DataSelector Overfull \hbox (8.36917pt too wide) in paragraph at lines 481--482 []\T1/ptm/m/n/10 INDICES (XFELDe-tAna.algorithms.selection.DataSelector Underfull \hbox (badness 10000) in paragraph at lines 489--491 []\T1/ptm/m/n/10 init_metadata() (XFELDe- Overfull \hbox (163.06902pt too wide) in paragraph at lines 489--491 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRange GatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 491--493 []\T1/ptm/m/n/10 init_metadata() (XFELDe- Overfull \hbox (141.45908pt too wide) in paragraph at lines 491--493 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRang eSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 493--495 []\T1/ptm/m/n/10 init_with_nan() (in mod-ule XFELDe- Overfull \hbox (13.69037pt too wide) in paragraph at lines 493--495 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process), Underfull \hbox (badness 10000) in paragraph at lines 495--497 []\T1/ptm/m/n/10 initiate_result() (in mod-ule XFELDe- Overfull \hbox (13.69037pt too wide) in paragraph at lines 495--497 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process), Underfull \hbox (badness 10000) in paragraph at lines 497--499 []\T1/ptm/m/n/10 initiate_result() (XFELDe- Overfull \hbox (71.30946pt too wide) in paragraph at lines 497--499 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.ParallelProcess Overfull \hbox (118.97871pt too wide) in paragraph at lines 499--501 []\T1/ptm/m/n/10 initKernel() (XFELDe-tAna.algorithms.gpu.calc_offset_and_noise .GpuOffsetNoiseCalc Underfull \hbox (badness 10000) in paragraph at lines 504--506 []\T1/ptm/m/n/10 integrate_result() (XFELDe- Overfull \hbox (71.30946pt too wide) in paragraph at lines 504--506 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.ParallelProcess Underfull \hbox (badness 10000) in paragraph at lines 511--512 []\T1/ptm/m/n/10 invertADC (in mod-ule XFELDe- [149] Underfull \hbox (badness 10000) in paragraph at lines 537--538 []\T1/ptm/m/n/10 JFChunkReader (class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 537--538 \T1/ptm/m/n/10 tAna.detectors.jungfrau.jf_chunk_reader), Overfull \hbox (1.94933pt too wide) in paragraph at lines 542--543 []\T1/ptm/m/n/10 kernelC (XFELDe-tAna.util.pattern_kernels.patternkernels Overfull \hbox (7.49997pt too wide) in paragraph at lines 543--544 []\T1/ptm/m/n/10 kernelD0 (XFELDe-tAna.util.pattern_kernels.patternkernels Overfull \hbox (7.49997pt too wide) in paragraph at lines 544--545 []\T1/ptm/m/n/10 kernelD1 (XFELDe-tAna.util.pattern_kernels.patternkernels Overfull \hbox (7.49997pt too wide) in paragraph at lines 545--546 []\T1/ptm/m/n/10 kernelD2 (XFELDe-tAna.util.pattern_kernels.patternkernels Overfull \hbox (7.49997pt too wide) in paragraph at lines 546--547 []\T1/ptm/m/n/10 kernelD3 (XFELDe-tAna.util.pattern_kernels.patternkernels Overfull \hbox (7.49997pt too wide) in paragraph at lines 547--548 []\T1/ptm/m/n/10 kernelQ0 (XFELDe-tAna.util.pattern_kernels.patternkernels Overfull \hbox (7.49997pt too wide) in paragraph at lines 548--549 []\T1/ptm/m/n/10 kernelQ1 (XFELDe-tAna.util.pattern_kernels.patternkernels Overfull \hbox (7.49997pt too wide) in paragraph at lines 549--550 []\T1/ptm/m/n/10 kernelQ2 (XFELDe-tAna.util.pattern_kernels.patternkernels Overfull \hbox (7.49997pt too wide) in paragraph at lines 550--551 []\T1/ptm/m/n/10 kernelQ3 (XFELDe-tAna.util.pattern_kernels.patternkernels Overfull \hbox (0.83934pt too wide) in paragraph at lines 551--552 []\T1/ptm/m/n/10 kernelS (XFELDe-tAna.util.pattern_kernels.patternkernels Overfull \hbox (6.38998pt too wide) in paragraph at lines 552--553 []\T1/ptm/m/n/10 kernelT0 (XFELDe-tAna.util.pattern_kernels.patternkernels Overfull \hbox (6.38998pt too wide) in paragraph at lines 553--554 []\T1/ptm/m/n/10 kernelT1 (XFELDe-tAna.util.pattern_kernels.patternkernels Overfull \hbox (6.38998pt too wide) in paragraph at lines 554--555 []\T1/ptm/m/n/10 kernelT2 (XFELDe-tAna.util.pattern_kernels.patternkernels Overfull \hbox (6.38998pt too wide) in paragraph at lines 555--556 []\T1/ptm/m/n/10 kernelT3 (XFELDe-tAna.util.pattern_kernels.patternkernels Overfull \hbox (6.38998pt too wide) in paragraph at lines 556--557 []\T1/ptm/m/n/10 kernelT4 (XFELDe-tAna.util.pattern_kernels.patternkernels Overfull \hbox (6.38998pt too wide) in paragraph at lines 557--558 []\T1/ptm/m/n/10 kernelT5 (XFELDe-tAna.util.pattern_kernels.patternkernels Overfull \hbox (6.38998pt too wide) in paragraph at lines 558--559 []\T1/ptm/m/n/10 kernelT6 (XFELDe-tAna.util.pattern_kernels.patternkernels Overfull \hbox (6.38998pt too wide) in paragraph at lines 559--560 []\T1/ptm/m/n/10 kernelT7 (XFELDe-tAna.util.pattern_kernels.patternkernels Overfull \hbox (6.38998pt too wide) in paragraph at lines 560--561 []\T1/ptm/m/n/10 kernelT8 (XFELDe-tAna.util.pattern_kernels.patternkernels Overfull \hbox (6.38998pt too wide) in paragraph at lines 561--562 []\T1/ptm/m/n/10 kernelT9 (XFELDe-tAna.util.pattern_kernels.patternkernels Underfull \hbox (badness 10000) in paragraph at lines 568--569 []\T1/ptm/m/n/10 latexLabelFormatter() (in mod-ule XFELDe- Overfull \hbox (111.10892pt too wide) in paragraph at lines 579--581 []\T1/ptm/m/n/10 load_data() (XFELDe-tAna.detectors.agipd.dyrange_algorithms.pr ocess.ProcessDrscs Underfull \hbox (badness 10000) in paragraph at lines 581--582 []\T1/ptm/m/n/10 loadedf() (in mod-ule XFELDe- [150] Underfull \hbox (badness 10000) in paragraph at lines 603--604 []\T1/ptm/m/n/10 makeReport() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 603--604 \T1/ptm/m/n/10 tAna.core.mapcalculator.MapCalculator Underfull \hbox (badness 10000) in paragraph at lines 604--605 []\T1/ptm/m/n/10 MapCalculator (class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 615--616 []\T1/ptm/m/n/10 maximum_sctype() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 616--617 []\T1/ptm/m/n/10 MAY_SHARE_BOUNDS() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 617--618 []\T1/ptm/m/n/10 MAY_SHARE_EXACT() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 618--619 []\T1/ptm/m/n/10 may_share_memory() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 621--623 []\T1/ptm/m/n/10 median3d (in mod-ule XFELDe- Overfull \hbox (26.93044pt too wide) in paragraph at lines 621--623 \T1/ptm/m/n/10 tAna.algorithms.gpu.kernels.correct_common_mode), Underfull \hbox (badness 10000) in paragraph at lines 623--625 []\T1/ptm/m/n/10 median3dBitonic (in mod-ule XFELDe- Overfull \hbox (26.93044pt too wide) in paragraph at lines 623--625 \T1/ptm/m/n/10 tAna.algorithms.gpu.kernels.correct_common_mode), Underfull \hbox (badness 10000) in paragraph at lines 625--627 []\T1/ptm/m/n/10 median3dNetwork() (in mod-ule XFELDe- Overfull \hbox (61.3601pt too wide) in paragraph at lines 625--627 \T1/ptm/m/n/10 tAna.algorithms.gpu.kernels.correct_common_mode_batcher), Underfull \hbox (badness 10000) in paragraph at lines 628--629 []\T1/ptm/m/n/10 MergeDrscs (class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 632--633 []\T1/ptm/m/n/10 min_scalar_type() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 638--639 []\T1/ptm/m/n/10 ModuleDeprecationWarning() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 672--673 []\T1/ptm/m/n/10 non_empty_trains() (in mod-ule XFELDe- [151] Underfull \hbox (badness 10000) in paragraph at lines 683--685 []\T1/ptm/m/n/10 oddeven_merge() (in mod-ule XFELDe- Overfull \hbox (61.3601pt too wide) in paragraph at lines 683--685 \T1/ptm/m/n/10 tAna.algorithms.gpu.kernels.correct_common_mode_batcher), Underfull \hbox (badness 10000) in paragraph at lines 685--687 []\T1/ptm/m/n/10 oddeven_merge_sort() (in mod-ule XFELDe- Overfull \hbox (61.3601pt too wide) in paragraph at lines 685--687 \T1/ptm/m/n/10 tAna.algorithms.gpu.kernels.correct_common_mode_batcher), Underfull \hbox (badness 10000) in paragraph at lines 687--689 []\T1/ptm/m/n/10 oddeven_merge_sort_range() (in mod-ule XFELDe- Overfull \hbox (61.3601pt too wide) in paragraph at lines 687--689 \T1/ptm/m/n/10 tAna.algorithms.gpu.kernels.correct_common_mode_batcher), Underfull \hbox (badness 10000) in paragraph at lines 702--704 []\T1/ptm/m/n/10 ParallelProcess (class in XFELDe- Overfull \hbox (13.69037pt too wide) in paragraph at lines 702--704 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process), Underfull \hbox (badness 10000) in paragraph at lines 705--706 []\T1/ptm/m/n/10 PatternClassifier (class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 706--707 []\T1/ptm/m/n/10 patternkernels (class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 707--708 []\T1/ptm/m/n/10 PatternSelector (class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 731--732 []\T1/ptm/m/n/10 print() (in mod-ule XFELDe- Overfull \hbox (13.69037pt too wide) in paragraph at lines 731--732 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process), Underfull \hbox (badness 10000) in paragraph at lines 732--733 []\T1/ptm/m/n/10 printFormattedLogs() (XFELDe- Overfull \hbox (116.56964pt too wide) in paragraph at lines 733--735 []\T1/ptm/m/n/10 process() (XFELDe-tAna.detectors.agipd.merge_dynrange.AgipdMer geDynamicRange Underfull \hbox (badness 10000) in paragraph at lines 735--737 []\T1/ptm/m/n/10 process_data_point() (XFELDe- Overfull \hbox (63.67963pt too wide) in paragraph at lines 735--737 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.ProcessDrscs Underfull \hbox (badness 10000) in paragraph at lines 737--739 []\T1/ptm/m/n/10 ProcessDrscs (class in XFELDe- Overfull \hbox (13.69037pt too wide) in paragraph at lines 737--739 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process), Underfull \hbox (badness 10000) in paragraph at lines 762--763 []\T1/ptm/m/n/10 ravel_multi_index() (in mod-ule XFELDe- Overfull \hbox (118.72876pt too wide) in paragraph at lines 763--765 []\T1/ptm/m/n/10 read_data() (XFELDe-tAna.detectors.agipd.dyrange_algorithms.pr ocess.ParallelProcess Underfull \hbox (badness 10000) in paragraph at lines 765--766 []\T1/ptm/m/n/10 readChunks() (XFELDe-tAna.core.reader.ChunkReader [152] Underfull \hbox (badness 10000) in paragraph at lines 766--768 []\T1/ptm/m/n/10 readChunks() (XFELDe- Overfull \hbox (38.96056pt too wide) in paragraph at lines 766--768 \T1/ptm/m/n/10 tAna.detectors.jungfrau.jf_chunk_reader.JFChunkReader Underfull \hbox (badness 10000) in paragraph at lines 768--769 []\T1/ptm/m/n/10 readData() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 769--770 []\T1/ptm/m/n/10 readData() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 770--771 []\T1/ptm/m/n/10 readData() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 771--772 []\T1/ptm/m/n/10 readData() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 772--773 []\T1/ptm/m/n/10 readData() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 773--774 []\T1/ptm/m/n/10 readData() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 774--775 []\T1/ptm/m/n/10 readData() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 775--776 []\T1/ptm/m/n/10 readData() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 776--777 []\T1/ptm/m/n/10 readData() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 777--778 []\T1/ptm/m/n/10 readData() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 778--779 []\T1/ptm/m/n/10 readData() (in mod-ule XFELDe- Overfull \hbox (41.9299pt too wide) in paragraph at lines 779--781 []\T1/ptm/m/n/10 readData() (XFELDe-tAna.detectors.pnccd.frm6reader.Frms6Reader Underfull \hbox (badness 10000) in paragraph at lines 789--790 []\T1/ptm/m/n/10 registerFailure() (XFELDe-tAna.core.profiler.Profiler Underfull \hbox (badness 10000) in paragraph at lines 790--791 []\T1/ptm/m/n/10 registerFunction() (XFELDe-tAna.core.profiler.Profiler Underfull \hbox (badness 10000) in paragraph at lines 791--792 []\T1/ptm/m/n/10 registerValue() (XFELDe-tAna.core.profiler.Profiler Overfull \hbox (10.64919pt too wide) in paragraph at lines 793--794 []\T1/ptm/m/n/10 REMOVE (XFELDe-tAna.algorithms.selection.DataSelector Underfull \hbox (badness 10000) in paragraph at lines 795--796 []\T1/ptm/m/n/10 reorderPixels() (in mod-ule XFELDe- Overfull \hbox (105.5792pt too wide) in paragraph at lines 798--800 []\T1/ptm/m/n/10 reset() (XFELDe-tAna.algorithms.correct_common_mode.CommonMode Correction Overfull \hbox (97.55896pt too wide) in paragraph at lines 800--802 []\T1/ptm/m/n/10 reset() (XFELDe-tAna.algorithms.gpu.calc_offset_and_noise.GpuO ffsetNoiseCalc Overfull \hbox (31.14925pt too wide) in paragraph at lines 802--803 []\T1/ptm/m/n/10 reset() (XFELDe-tAna.algorithms.histogram.HistogramCalculator Overfull \hbox (16.71933pt too wide) in paragraph at lines 803--804 []\T1/ptm/m/n/10 reset() (XFELDe-tAna.algorithms.split_event.PatternClassifier Underfull \hbox (badness 10000) in paragraph at lines 808--810 []\T1/ptm/m/n/10 resultDescription() (XFELDe- Overfull \hbox (3.71994pt too wide) in paragraph at lines 808--810 \T1/ptm/m/n/10 tAna.algorithms.histogram.HistogramCalculator Underfull \hbox (badness 10000) in paragraph at lines 810--812 []\T1/ptm/m/n/10 resultDescription() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 810--812 \T1/ptm/m/n/10 tAna.algorithms.split_event.PatternClassifier Underfull \hbox (badness 10000) in paragraph at lines 812--813 []\T1/ptm/m/n/10 resultDescription() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 812--813 \T1/ptm/m/n/10 tAna.core.mapcalculator.MapCalculator Underfull \hbox (badness 10000) in paragraph at lines 813--815 []\T1/ptm/m/n/10 return_data() (XFELDe- Overfull \hbox (163.06902pt too wide) in paragraph at lines 813--815 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRange GatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 815--817 []\T1/ptm/m/n/10 return_data() (XFELDe- Overfull \hbox (141.45908pt too wide) in paragraph at lines 815--817 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRang eSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 819--820 []\T1/ptm/m/n/10 rnbw_empty_white() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 822--823 []\T1/ptm/m/n/10 rollout_data() (in mod-ule XFELDe- Overfull \hbox (93.1891pt too wide) in paragraph at lines 828--830 []\T1/ptm/m/n/10 run() (XFELDe-tAna.detectors.agipd.dyrange_algorithms.process. ParallelProcess Overfull \hbox (85.55927pt too wide) in paragraph at lines 830--832 []\T1/ptm/m/n/10 run() (XFELDe-tAna.detectors.agipd.dyrange_algorithms.process. ProcessDrscs Overfull \hbox (35.47032pt too wide) in paragraph at lines 832--833 []\T1/ptm/m/n/10 run() (XFELDe-tAna.detectors.agipd.merge_dynrange.MergeDrscs Underfull \hbox (badness 10000) in paragraph at lines 833--834 []\T1/ptm/m/n/10 running_mean_rms() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 838--839 []\T1/ptm/m/n/10 sanitize_data_cellid() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 842--843 []\T1/ptm/m/n/10 savez_compressed() (in mod-ule XFELDe- [153] Underfull \hbox (badness 10000) in paragraph at lines 844--846 []\T1/ptm/m/n/10 scale_full_x_axis() (XFELDe- Overfull \hbox (63.67963pt too wide) in paragraph at lines 844--846 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.ProcessDrscs Underfull \hbox (badness 10000) in paragraph at lines 846--848 []\T1/ptm/m/n/10 scale_x_interval() (XFELDe- Overfull \hbox (63.67963pt too wide) in paragraph at lines 846--848 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.ProcessDrscs Overfull \hbox (15.59944pt too wide) in paragraph at lines 855--856 []\T1/ptm/m/n/10 select() (XFELDe-tAna.algorithms.split_event.PatternSelector Underfull \hbox (badness 10000) in paragraph at lines 856--857 []\T1/ptm/m/n/10 sequenceOfUniques() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 857--858 []\T1/ptm/m/n/10 set_numeric_ops() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 858--859 []\T1/ptm/m/n/10 set_printoptions() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 859--860 []\T1/ptm/m/n/10 set_string_function() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 860--861 []\T1/ptm/m/n/10 setBadPixelMask() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 860--861 \T1/ptm/m/n/10 tAna.core.mapcalculator.MapCalculator Underfull \hbox (badness 10000) in paragraph at lines 862--863 []\T1/ptm/m/n/10 SetDictCase() (in mod-ule XFELDe- Overfull \hbox (123.3591pt too wide) in paragraph at lines 867--869 []\T1/ptm/m/n/10 setRange() (XFELDe-tAna.algorithms.correct_common_mode.CommonM odeCorrection Underfull \hbox (badness 10000) in paragraph at lines 869--870 []\T1/ptm/m/n/10 setThresholds() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 869--870 \T1/ptm/m/n/10 tAna.core.mapcalculator.MapCalculator Underfull \hbox (badness 10000) in paragraph at lines 873--874 []\T1/ptm/m/n/10 SHIFT_DIVIDEBYZERO() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 874--875 []\T1/ptm/m/n/10 SHIFT_INVALID() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 875--876 []\T1/ptm/m/n/10 SHIFT_OVERFLOW() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 876--877 []\T1/ptm/m/n/10 SHIFT_UNDERFLOW() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 880--881 []\T1/ptm/m/n/10 simplePlot() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 892--894 []\T1/ptm/m/n/10 split_interval() (XFELDe- Overfull \hbox (63.67963pt too wide) in paragraph at lines 892--894 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.ProcessDrscs Underfull \hbox (badness 10000) in paragraph at lines 898--899 []\T1/ptm/m/n/10 stackable (XFELDe-tAna.util.knumpy.axisMeaning Underfull \hbox (badness 10000) in paragraph at lines 899--900 []\T1/ptm/m/n/10 stackable (XFELDe-tAna.util.knumpy.imageZAxis Underfull \hbox (badness 10000) in paragraph at lines 900--901 []\T1/ptm/m/n/10 stackable (XFELDe-tAna.util.knumpy.pulseAxis at- Underfull \hbox (badness 10000) in paragraph at lines 901--902 []\T1/ptm/m/n/10 stackable (XFELDe-tAna.util.knumpy.stackAxis at- Underfull \hbox (badness 10000) in paragraph at lines 903--905 []\T1/ptm/m/n/10 statisticsCalculator() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 919--920 []\T1/ptm/m/n/10 ThresholdFilter (class in XFELDe- [154] Underfull \hbox (badness 10000) in paragraph at lines 926--927 []\T1/ptm/m/n/10 transpose3d (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 931--932 []\T1/ptm/m/n/10 tril_indices_from() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 935--936 []\T1/ptm/m/n/10 triu_indices_from() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 947--948 []\T1/ptm/m/n/10 UFUNC_PYVALS_NAME() (in mod-ule XFELDe- Overfull \hbox (13.15033pt too wide) in paragraph at lines 948--949 []\T1/ptm/m/n/10 undebug() (XFELDe-tAna.core.mapcalculator.MapCalculator Underfull \hbox (badness 10000) in paragraph at lines 951--952 []\T1/ptm/m/n/10 UnitaryCalculator (class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 963--964 []\T1/ptm/m/n/10 VisibleDeprecationWarning() (in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 973--974 []\T1/ptm/m/n/10 write() (XFELDe-tAna.util.p2pInterface.AsyncServer Underfull \hbox (badness 10000) in paragraph at lines 974--975 []\T1/ptm/m/n/10 write() (XFELDe-tAna.util.p2pInterface.P2pInterface Underfull \hbox (badness 10000) in paragraph at lines 975--977 []\T1/ptm/m/n/10 write_data() (XFELDe- Overfull \hbox (163.06902pt too wide) in paragraph at lines 975--977 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRange GatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 977--979 []\T1/ptm/m/n/10 write_data() (XFELDe- Overfull \hbox (141.45908pt too wide) in paragraph at lines 977--979 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRang eSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 979--981 []\T1/ptm/m/n/10 write_data() (XFELDe- Overfull \hbox (71.30946pt too wide) in paragraph at lines 979--981 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.ParallelProcess Underfull \hbox (badness 10000) in paragraph at lines 981--983 []\T1/ptm/m/n/10 write_metadata() (XFELDe- Overfull \hbox (163.06902pt too wide) in paragraph at lines 981--983 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRange GatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 983--985 []\T1/ptm/m/n/10 write_metadata() (XFELDe- Overfull \hbox (141.45908pt too wide) in paragraph at lines 983--985 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRang eSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 985--987 []\T1/ptm/m/n/10 write_to_file() (XFELDe- Overfull \hbox (163.06902pt too wide) in paragraph at lines 985--987 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRange GatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 987--989 []\T1/ptm/m/n/10 write_to_file() (XFELDe- Overfull \hbox (141.45908pt too wide) in paragraph at lines 987--989 \T1/ptm/m/n/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRang eSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 989--990 []\T1/ptm/m/n/10 WriteImage() (XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 989--990 \T1/ptm/m/n/10 tAna.detectors.edf_data.EdfFile.EdfFile Underfull \hbox (badness 10000) in paragraph at lines 997--998 []\T1/ptm/m/n/10 XFELDetAna.algorithms.gpu.calc_offset_and_noise Underfull \hbox (badness 10000) in paragraph at lines 998--999 []\T1/ptm/m/n/10 XFELDetAna.algorithms.gpu.correct_common_mode Underfull \hbox (badness 7613) in paragraph at lines 1000--1001 []\T1/ptm/m/n/10 XFELDetAna.algorithms.gpu.correct_relgain (mod-ule), Overfull \hbox (11.9501pt too wide) in paragraph at lines 1002--1003 []\T1/ptm/m/n/10 XFELDetAna.algorithms.gpu.kernels.calc_offset_and_noise Overfull \hbox (17.76027pt too wide) in paragraph at lines 1003--1004 []\T1/ptm/m/n/10 XFELDetAna.algorithms.gpu.kernels.correct_common_mode Overfull \hbox (52.18994pt too wide) in paragraph at lines 1004--1005 []\T1/ptm/m/n/10 XFELDetAna.algorithms.gpu.kernels.correct_common_mode_batcher [155] Underfull \hbox (badness 10000) in paragraph at lines 1005--1006 []\T1/ptm/m/n/10 XFELDetAna.algorithms.gpu.kernels.simple_correction Underfull \hbox (badness 10000) in paragraph at lines 1009--1010 []\T1/ptm/m/n/10 XFELDetAna.algorithms.gpu.kernels.xfelgpukernels Underfull \hbox (badness 10000) in paragraph at lines 1029--1030 []\T1/ptm/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms.gather Overfull \hbox (4.5202pt too wide) in paragraph at lines 1030--1031 []\T1/ptm/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms.process Underfull \hbox (badness 10000) in paragraph at lines 1031--1032 []\T1/ptm/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms.util Underfull \hbox (badness 10000) in paragraph at lines 1036--1037 []\T1/ptm/m/n/10 XFELDetAna.detectors.agipd.merge_dynrange (mod- Underfull \hbox (badness 10000) in paragraph at lines 1055--1056 []\T1/ptm/m/n/10 XFELDetAna.detectors.jungfrau.readerPSI (mod-ule), [156]) (./src.aux) Package rerunfilecheck Warning: File `src.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on src.pdf (160 pages, 2502679 bytes). Transcript written on src.log. [rtd-command-info] start-time: 2019-06-12T12:56:34.359000Z, end-time: 2019-06-12T12:56:34.401000Z, duration: 0, exit-code: 0 mv -f /user_builds/pydetlib/checkouts/latest/doc/_build/latex/src.pdf /user_builds/pydetlib/artifacts/latest/sphinx_pdf/pydetlib.pdf [rtd-command-info] start-time: 2019-06-12T12:56:36.753000Z, end-time: 2019-06-12T12:56:59.438000Z, duration: 22, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.3.5 making output directory... loading translations [en]... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [epub]: targets for 33 source files that are out of date updating environment: 0 added, 8 changed, 0 removed reading sources... [ 12%] api/XFELDetAna Plotting not available No module named 'matplotlib.collections' reading sources... [ 25%] api/XFELDetAna.algorithms reading sources... [ 37%] api/XFELDetAna.algorithms.tests reading sources... [ 50%] api/XFELDetAna.detectors.agipd reading sources... [ 62%] api/XFELDetAna.detectors.agipd.tests reading sources... [ 75%] api/XFELDetAna.detectors.jungfrau reading sources... [ 87%] api/XFELDetAna.plotting reading sources... [100%] api/XFELDetAna.util /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst:28: WARNING: autodoc: failed to import module 'XFELDetAna.xfelpycaltools'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/xfelpycaltools.py", line 68, in from .algorithms.characterize_cti import CTICalculator File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_cti.py", line 18, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:7: WARNING: toctree contains reference to nonexisting document 'api/XFELDetAna.algorithms.cython' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:16: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.characterize_cti'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_cti.py", line 18, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:21: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.characterize_noise'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_noise.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:26: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.characterize_relgain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_relgain.py", line 14, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:36: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.correct_cti'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correct_cti.py", line 10, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:41: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.correct_offset'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correct_offset.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:46: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.correct_relgain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correct_relgain.py", line 15, in from XFELDetAna.plotting.multidim import deviationPlot3D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:51: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.correction'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator:38: ERROR: Unknown interpreted text role "method". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator.get:26: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:71: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.statistics'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/statistics.py", line 14, in from .characterize_noise import (NoiseCalculator, _noiseCalChunk, File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_noise.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_cti'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_cti.py", line 5, in from XFELDetAna.algorithms.characterize_cti import CTICalculator File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_cti.py", line 18, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:12: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_noise'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_noise.py", line 5, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:17: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_offset'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_offset.py", line 5, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:22: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_rel_gain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_rel_gain.py", line 5, in from XFELDetAna.algorithms.characterize_relgain import GainMapCalculator File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_relgain.py", line 14, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:27: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_characterize_split_events'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_characterize_split_events.py", line 6, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:32: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_correct_common_mode'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_correct_common_mode.py", line 6, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:37: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_correct_cti'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_correct_cti.py", line 5, in from XFELDetAna.algorithms.correct_cti import CTICorrection File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correct_cti.py", line 10, in from .correction import CorrectionBase File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/correction.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:42: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_correct_offset'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_correct_offset.py", line 6, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:47: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_correct_relgain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_correct_relgain.py", line 5, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:52: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_statistics'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_statistics.py", line 6, in from XFELDetAna.algorithms.statistics import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/statistics.py", line 14, in from .characterize_noise import (NoiseCalculator, _noiseCalChunk, File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/characterize_noise.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:57: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.test_unitary'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/test_unitary.py", line 7, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:62: WARNING: autodoc: failed to import module 'XFELDetAna.algorithms.tests.testing_base'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:16: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.agipd.characterize_dynrange'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/characterize_dynrange.py", line 18, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:31: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.agipd.threshold_gain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/threshold_gain.py", line 13, in from XFELDetAna.plotting.multidim import deviationPlot3D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.tests.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.agipd.tests.test_threshold_gain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/tests/test_threshold_gain.py", line 6, in from XFELDetAna.algorithms.tests.testing_base import ( File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/tests/testing_base.py", line 8, in from XFELDetAna.util.cluster import init_ipcluster, stop_ipcluster File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.jungfrau.characterize_jfgain'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/characterize_jfgain.py", line 14, in from XFELDetAna.plotting.multidim import deviationPlot3D, deviationPlot2D File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst:12: WARNING: autodoc: failed to import module 'XFELDetAna.detectors.jungfrau.fitFuncs'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/fitFuncs.py", line 2, in from iminuit.util import make_func_code ImportError: No module named 'iminuit.util' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/jf_chunk_reader.py:docstring of XFELDetAna.detectors.jungfrau.jf_chunk_reader.JFChunkReader.readChunks:10: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.plotting.heatmap'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/heatmap.py", line 273, in import matplotlib.collections as mcoll ImportError: No module named 'matplotlib.collections' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst:17: WARNING: autodoc: failed to import module 'XFELDetAna.plotting.multidim'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/plotting/multidim.py", line 11, in from matplotlib.offsetbox import (TextArea, AnnotationBbox) ImportError: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:7: WARNING: autodoc: failed to import module 'XFELDetAna.util.cluster'; the following exception was raised: Traceback (most recent call last): File "/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/ext/autodoc.py", line 385, in import_object __import__(self.modname) File "/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/util/cluster.py", line 1, in import psutil ImportError: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:17: WARNING: __all__ should be a list of strings, not .wrapped at 0x7ff729167268> (in module XFELDetAna.util.knumpy) -- ignoring __all__ looking for now-outdated files... none found pickling environment... done checking consistency... /user_builds/pydetlib/checkouts/latest/lib/docs/examples/DataGeneratorExample.rst:: WARNING: document isn't included in any toctree /user_builds/pydetlib/checkouts/latest/lib/docs/examples/PlotExamples.rst:: WARNING: document isn't included in any toctree /user_builds/pydetlib/checkouts/latest/lib/docs/examples/gainMapStability.rst:: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 3%] _notebooks/DataGeneratorExample writing output... [ 6%] _notebooks/PlotExamples writing output... [ 9%] _notebooks/calculatorCreation writing output... [ 12%] _notebooks/gainMapStability writing output... [ 15%] _notebooks/index writing output... [ 18%] api/XFELDetAna writing output... [ 21%] api/XFELDetAna.algorithms writing output... [ 24%] api/XFELDetAna.algorithms.gpu writing output... [ 27%] api/XFELDetAna.algorithms.gpu.kernels writing output... [ 30%] api/XFELDetAna.algorithms.tests writing output... [ 33%] api/XFELDetAna.core writing output... [ 36%] api/XFELDetAna.detectors writing output... [ 39%] api/XFELDetAna.detectors.agipd writing output... [ 42%] api/XFELDetAna.detectors.agipd.dyrange_algorithms writing output... [ 45%] api/XFELDetAna.detectors.agipd.gpu writing output... [ 48%] api/XFELDetAna.detectors.agipd.gpu.kernels writing output... [ 51%] api/XFELDetAna.detectors.agipd.tests writing output... [ 54%] api/XFELDetAna.detectors.dssc writing output... [ 57%] api/XFELDetAna.detectors.edf_data writing output... [ 60%] api/XFELDetAna.detectors.epix writing output... [ 63%] api/XFELDetAna.detectors.fastccd writing output... [ 66%] api/XFELDetAna.detectors.generator writing output... [ 69%] api/XFELDetAna.detectors.jungfrau writing output... [ 72%] api/XFELDetAna.detectors.lpd writing output... [ 75%] api/XFELDetAna.detectors.pnccd writing output... [ 78%] api/XFELDetAna.plotting writing output... [ 81%] api/XFELDetAna.util writing output... [ 84%] api/modules writing output... [ 87%] examples/DataGeneratorExample writing output... [ 90%] examples/PlotExamples writing output... [ 93%] examples/gainMapStability writing output... [ 96%] index writing output... [100%] installation generating indices... genindex py-modindex highlighting module code... [ 2%] XFELDetAna.detectors.edf_data.reader highlighting module code... [ 4%] XFELDetAna.algorithms.gpu.correct_common_mode highlighting module code... [ 6%] XFELDetAna.core.mapcalculator highlighting module code... [ 9%] XFELDetAna.detectors.dssc.reader highlighting module code... [ 11%] XFELDetAna.detectors.edf_data.EdfFile highlighting module code... [ 13%] XFELDetAna.detectors.jungfrau.readerPSI highlighting module code... [ 15%] XFELDetAna.detectors.jungfrau.reader highlighting module code... [ 18%] XFELDetAna.detectors.agipd.dyrange_algorithms.util highlighting module code... [ 20%] XFELDetAna.detectors.epix.reader highlighting module code... [ 22%] XFELDetAna.algorithms.gpu.kernels.correct_common_mode_batcher highlighting module code... [ 25%] XFELDetAna.detectors.agipd.dyrange_algorithms.process highlighting module code... [ 27%] XFELDetAna.algorithms.histogram highlighting module code... [ 29%] XFELDetAna.plotting.histogram highlighting module code... [ 31%] XFELDetAna.algorithms.selection highlighting module code... [ 34%] XFELDetAna.detectors.lpd.reader highlighting module code... [ 36%] XFELDetAna.detectors.pnccd.reader highlighting module code... [ 38%] XFELDetAna.algorithms.gpu.calc_offset_and_noise highlighting module code... [ 40%] XFELDetAna.detectors.generator.reader highlighting module code... [ 43%] XFELDetAna.detectors.fastccd.reader highlighting module code... [ 45%] XFELDetAna.detectors.pnccd.frm6reader highlighting module code... [ 47%] XFELDetAna.core.profiler highlighting module code... [ 50%] XFELDetAna.plotting.util highlighting module code... [ 52%] XFELDetAna.detectors.agipd.reader highlighting module code... [ 54%] numpy.ma.core highlighting module code... [ 56%] XFELDetAna.util.env highlighting module code... [ 59%] XFELDetAna.algorithms.correct_common_mode highlighting module code... [ 61%] XFELDetAna.detectors.agipd.merge_dynrange highlighting module code... [ 63%] XFELDetAna.algorithms.util highlighting module code... [ 65%] XFELDetAna.util.knumpy highlighting module code... [ 68%] XFELDetAna.detectors.agipd.dyrange_algorithms.gather highlighting module code... [ 70%] XFELDetAna.util.pattern_kernels highlighting module code... [ 72%] XFELDetAna.core.reader highlighting module code... [ 75%] XFELDetAna.algorithms.gpu.kernels.statistics highlighting module code... [ 77%] XFELDetAna.plotting.simpleplot highlighting module code... [ 79%] XFELDetAna.util.p2pInterface highlighting module code... [ 81%] XFELDetAna.detectors.jungfrau.util highlighting module code... [ 84%] XFELDetAna.algorithms.unitary highlighting module code... [ 86%] XFELDetAna.detectors.edf_data.loadedf highlighting module code... [ 88%] XFELDetAna.detectors.fastccd.readerh5 highlighting module code... [ 90%] XFELDetAna.algorithms.split_event highlighting module code... [ 93%] XFELDetAna.detectors.jungfrau.jf_chunk_reader highlighting module code... [ 95%] XFELDetAna.core.util highlighting module code... [ 97%] numpy highlighting module code... [100%] XFELDetAna.core.decorators writing additional pages... search copying images... [ 1%] _notebooks/PlotExamples_files/PlotExamples_20_0.png copying images... [ 2%] _notebooks/gainMapStability_files/gainMapStability_12_6.png copying images... [ 3%] examples/gainMapStability_files/gainMapStability_6_4.png copying images... [ 4%] examples/PlotExamples_files/PlotExamples_24_0.png copying images... [ 5%] _notebooks/PlotExamples_files/PlotExamples_6_1.png copying images... [ 6%] _notebooks/PlotExamples_files/PlotExamples_34_0.png copying images... [ 7%] examples/PlotExamples_files/PlotExamples_28_0.png copying images... [ 8%] _notebooks/gainMapStability_files/gainMapStability_13_0.png copying images... [ 9%] _notebooks/PlotExamples_files/PlotExamples_4_1.png copying images... [ 10%] examples/DataGeneratorExample_files/DataGeneratorExample_37_1.png copying images... [ 11%] _notebooks/PlotExamples_files/PlotExamples_32_0.png copying images... [ 12%] examples/PlotExamples_files/PlotExamples_8_1.png copying images... [ 13%] _notebooks/PlotExamples_files/PlotExamples_42_0.png copying images... [ 15%] examples/DataGeneratorExample_files/DataGeneratorExample_27_0.png copying images... [ 16%] _notebooks/DataGeneratorExample_files/DataGeneratorExample_17_1.png copying images... [ 17%] _notebooks/gainMapStability_files/gainMapStability_12_4.png copying images... [ 18%] _notebooks/gainMapStability_files/gainMapStability_12_5.png copying images... [ 19%] examples/gainMapStability_files/gainMapStability_6_1.png copying images... [ 20%] _notebooks/PlotExamples_files/PlotExamples_8_0.png copying images... [ 21%] _notebooks/PlotExamples_files/PlotExamples_26_0.png copying images... [ 22%] _notebooks/gainMapStability_files/gainMapStability_16_0.png copying images... [ 23%] _notebooks/PlotExamples_files/PlotExamples_10_1.png copying images... [ 24%] examples/PlotExamples_files/PlotExamples_22_0.png copying images... [ 25%] _notebooks/gainMapStability_files/gainMapStability_12_1.png copying images... [ 26%] _notebooks/gainMapStability_files/gainMapStability_12_3.png copying images... [ 27%] examples/DataGeneratorExample_files/DataGeneratorExample_25_0.png copying images... [ 29%] _notebooks/gainMapStability_files/gainMapStability_10_0.png copying images... [ 30%] examples/PlotExamples_files/PlotExamples_12_0.png copying images... [ 31%] examples/PlotExamples_files/PlotExamples_30_0.png copying images... [ 32%] _notebooks/PlotExamples_files/PlotExamples_28_0.png copying images... [ 33%] examples/gainMapStability_files/gainMapStability_6_3.png copying images... [ 34%] _notebooks/PlotExamples_files/PlotExamples_36_0.png copying images... [ 35%] examples/DataGeneratorExample_files/DataGeneratorExample_21_0.png copying images... [ 36%] _notebooks/gainMapStability_files/gainMapStability_12_10.png copying images... [ 37%] examples/PlotExamples_files/PlotExamples_42_0.png copying images... [ 38%] _notebooks/PlotExamples_files/PlotExamples_18_0.png copying images... [ 39%] examples/DataGeneratorExample_files/DataGeneratorExample_39_0.png copying images... [ 40%] examples/PlotExamples_files/PlotExamples_8_0.png copying images... [ 41%] examples/PlotExamples_files/PlotExamples_32_0.png copying images... [ 43%] examples/PlotExamples_files/PlotExamples_38_0.png copying images... [ 44%] _notebooks/PlotExamples_files/PlotExamples_30_0.png copying images... [ 45%] examples/DataGeneratorExample_files/DataGeneratorExample_21_1.png copying images... [ 46%] examples/DataGeneratorExample_files/DataGeneratorExample_25_1.png copying images... [ 47%] examples/PlotExamples_files/PlotExamples_10_1.png copying images... [ 48%] _notebooks/PlotExamples_files/PlotExamples_10_0.png copying images... [ 49%] examples/PlotExamples_files/PlotExamples_34_0.png copying images... [ 50%] _notebooks/PlotExamples_files/PlotExamples_22_2.png copying images... [ 51%] _notebooks/PlotExamples_files/PlotExamples_16_0.png copying images... [ 52%] examples/DataGeneratorExample_files/DataGeneratorExample_41_0.png copying images... [ 53%] examples/PlotExamples_files/PlotExamples_14_1.png copying images... [ 54%] examples/PlotExamples_files/PlotExamples_6_1.png copying images... [ 55%] _notebooks/PlotExamples_files/PlotExamples_24_0.png copying images... [ 56%] examples/PlotExamples_files/PlotExamples_20_0.png copying images... [ 58%] _notebooks/PlotExamples_files/PlotExamples_12_0.png copying images... [ 59%] _notebooks/PlotExamples_files/PlotExamples_6_0.png copying images... [ 60%] examples/DataGeneratorExample_files/DataGeneratorExample_31_0.png copying images... [ 61%] examples/PlotExamples_files/PlotExamples_26_0.png copying images... [ 62%] _notebooks/PlotExamples_files/PlotExamples_22_1.png copying images... [ 63%] examples/gainMapStability_files/gainMapStability_6_0.png copying images... [ 64%] examples/DataGeneratorExample_files/DataGeneratorExample_41_1.png copying images... [ 65%] examples/PlotExamples_files/PlotExamples_6_0.png copying images... [ 66%] _notebooks/gainMapStability_files/gainMapStability_11_0.png copying images... [ 67%] examples/PlotExamples_files/PlotExamples_4_1.png copying images... [ 68%] _notebooks/PlotExamples_files/PlotExamples_8_1.png copying images... [ 69%] examples/PlotExamples_files/PlotExamples_22_1.png copying images... [ 70%] examples/gainMapStability_files/gainMapStability_6_2.png copying images... [ 72%] _notebooks/PlotExamples_files/PlotExamples_8_2.png copying images... [ 73%] examples/PlotExamples_files/PlotExamples_4_0.png copying images... [ 74%] _notebooks/gainMapStability_files/gainMapStability_4_0.png copying images... [ 75%] _notebooks/gainMapStability_files/gainMapStability_12_9.png copying images... [ 76%] _notebooks/PlotExamples_files/PlotExamples_2_0.png copying images... [ 77%] examples/gainMapStability_files/gainMapStability_4_0.png copying images... [ 78%] examples/PlotExamples_files/PlotExamples_18_0.png copying images... [ 79%] examples/DataGeneratorExample_files/DataGeneratorExample_23_1.png copying images... [ 80%] examples/PlotExamples_files/PlotExamples_8_2.png copying images... [ 81%] examples/DataGeneratorExample_files/DataGeneratorExample_46_0.png copying images... [ 82%] examples/PlotExamples_files/PlotExamples_14_0.png copying images... [ 83%] examples/PlotExamples_files/PlotExamples_2_0.png copying images... [ 84%] _notebooks/PlotExamples_files/PlotExamples_38_0.png copying images... [ 86%] _notebooks/PlotExamples_files/PlotExamples_40_0.png copying images... [ 87%] _notebooks/gainMapStability_files/gainMapStability_12_8.png copying images... [ 88%] examples/PlotExamples_files/PlotExamples_16_0.png copying images... [ 89%] examples/DataGeneratorExample_files/DataGeneratorExample_14_0.png copying images... [ 90%] _notebooks/PlotExamples_files/PlotExamples_14_1.png copying images... [ 91%] _notebooks/PlotExamples_files/PlotExamples_14_0.png copying images... [ 92%] examples/DataGeneratorExample_files/DataGeneratorExample_23_0.png copying images... [ 93%] _notebooks/PlotExamples_files/PlotExamples_4_0.png copying images... [ 94%] examples/PlotExamples_files/PlotExamples_36_0.png copying images... [ 95%] _notebooks/gainMapStability_files/gainMapStability_9_0.png copying images... [ 96%] examples/PlotExamples_files/PlotExamples_10_0.png copying images... [ 97%] _notebooks/gainMapStability_files/gainMapStability_12_2.png copying images... [ 98%] examples/PlotExamples_files/PlotExamples_40_0.png copying images... [100%] _notebooks/gainMapStability_files/gainMapStability_12_7.png copying static files... WARNING: html_static_path entry '/user_builds/pydetlib/checkouts/latest/lib/docs/_static' does not exist WARNING: html_static_path entry '/rtd_root/readthedocs/templates/sphinx/_static' does not exist done copying extra files... done writing mimetype file... writing META-INF/container.xml file... writing content.opf file... writing toc.ncx file... writing XFELDetectorTools.epub file... build succeeded, 39 warnings. [rtd-command-info] start-time: 2019-06-12T12:56:59.519000Z, end-time: 2019-06-12T12:56:59.584000Z, duration: 0, exit-code: 0 mv -f /user_builds/pydetlib/checkouts/latest/doc/_build/epub/XFELDetectorTools.epub /user_builds/pydetlib/artifacts/latest/sphinx_epub/pydetlib.epub