Read the Docs build information Build id: 10964 Project: pydetlib Version: latest Commit: be29d63c7787addab1d001d2aefd6f2e6141043d Date: 2019-06-25T02:17:15.611750Z State: finished Success: True [rtd-command-info] start-time: 2019-06-25T07:17:34.580000Z, end-time: 2019-06-25T07:17:54.208000Z, duration: 19, exit-code: 0 python3 -mvirtualenv --no-site-packages --no-download /user_builds/pydetlib/envs/latest Using base prefix '/usr' New python executable in /user_builds/pydetlib/envs/latest/bin/python3 Not overwriting existing python script /user_builds/pydetlib/envs/latest/bin/python (you must use /user_builds/pydetlib/envs/latest/bin/python3) Installing setuptools, pip, wheel...done. [rtd-command-info] start-time: 2019-06-25T07:17:54.272000Z, end-time: 2019-06-25T07:18:48.025000Z, duration: 53, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/pip install --use-wheel -U --cache-dir /user_builds/pydetlib/.cache/pip sphinx==1.3.5 Pygments==2.1.3 setuptools==20.1.1 docutils==0.12 mkdocs==0.15.0 mock==1.0.1 pillow==2.6.1 git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext sphinx-rtd-theme==0.1.9 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.5.4 recommonmark==0.1.1 Collecting sphinx==1.3.5 Using cached https://files.pythonhosted.org/packages/ff/91/45883bc962bda1be7e78039b41cc15e1eb3327ec75679eedd067b5d07bd5/Sphinx-1.3.5-py2.py3-none-any.whl Requirement already up-to-date: Pygments==2.1.3 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages Collecting setuptools==20.1.1 Using cached https://files.pythonhosted.org/packages/e8/82/3b5455f74bf9ac0757d09c625b7741e6fc284d7519cffc3babb6c5173cf5/setuptools-20.1.1-py2.py3-none-any.whl Requirement already up-to-date: docutils==0.12 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: mkdocs==0.15.0 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: mock==1.0.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: pillow==2.6.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages Collecting readthedocs-sphinx-ext from git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext Cloning https://github.com/rtfd/readthedocs-sphinx-ext.git (to 0.6-alpha) to /tmp/pip-build-0d_kaxzy/readthedocs-sphinx-ext Requirement already up-to-date: sphinx-rtd-theme==0.1.9 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: alabaster!=0.7.5,<0.8,>=0.7 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: commonmark==0.5.4 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: recommonmark==0.1.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: babel!=2.0,>=1.3 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: six>=1.4 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: Jinja2>=2.3 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: snowballstemmer>=1.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: mkdocs-bootswatch>=0.1.0 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: livereload>=2.3.2 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: click>=4.0 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: mkdocs-bootstrap>=0.1.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: PyYAML>=3.10 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: tornado>=4.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: Markdown>=2.3.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: requests in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from readthedocs-sphinx-ext) Requirement already up-to-date: nilsimsa>=0.3.7 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from readthedocs-sphinx-ext) Requirement already up-to-date: pytz>=2015.7 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from babel!=2.0,>=1.3->sphinx==1.3.5) Requirement already up-to-date: MarkupSafe>=0.23 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from Jinja2>=2.3->sphinx==1.3.5) Requirement already up-to-date: backports-abc>=0.4 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from tornado>=4.1->mkdocs==0.15.0) Collecting certifi>=2017.4.17 (from requests->readthedocs-sphinx-ext) Downloading https://files.pythonhosted.org/packages/69/1b/b853c7a9d4f6a6d00749e94eb6f3a041e342a885b87340b79c1ef73e3a78/certifi-2019.6.16-py2.py3-none-any.whl (157kB) Requirement already up-to-date: idna<2.9,>=2.5 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: chardet<3.1.0,>=3.0.2 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: urllib3<1.25,>=1.21.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Installing collected packages: sphinx, setuptools, readthedocs-sphinx-ext, certifi Found existing installation: Sphinx 1.8.5 Uninstalling Sphinx-1.8.5: Successfully uninstalled Sphinx-1.8.5 Found existing installation: setuptools 28.8.0 Uninstalling setuptools-28.8.0: Successfully uninstalled setuptools-28.8.0 Found existing installation: readthedocs-sphinx-ext 0.5.4 Uninstalling readthedocs-sphinx-ext-0.5.4: Successfully uninstalled readthedocs-sphinx-ext-0.5.4 Running setup.py install for readthedocs-sphinx-ext: started Running setup.py install for readthedocs-sphinx-ext: finished with status 'done' Found existing installation: certifi 2019.3.9 Uninstalling certifi-2019.3.9: Successfully uninstalled certifi-2019.3.9 Successfully installed certifi-2019.6.16 readthedocs-sphinx-ext-0.5.4 setuptools-20.1.1 sphinx-1.3.5 You are using pip version 9.0.1, however version 19.1.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2019-06-25T07:18:48.127000Z, end-time: 2019-06-25T07:19:14.980000Z, duration: 26, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/pip install --exists-action=w --cache-dir /user_builds/pydetlib/.cache/pip -rlib/docs/requirements.txt Collecting sphinx>=1.4.5 (from -r lib/docs/requirements.txt (line 1)) Using cached https://files.pythonhosted.org/packages/7d/66/a4af242b4348b729b9d46ce5db23943ce9bca7da9bbe2ece60dc27f26420/Sphinx-1.8.5-py2.py3-none-any.whl Requirement already satisfied: ipython in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 2)) Requirement already satisfied: ipyparallel in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 3)) Requirement already satisfied: jupyter in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 4)) Requirement already satisfied: matplotlib>=2.0.0 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 5)) Requirement already satisfied: numpy>=1.12 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 6)) Requirement already satisfied: tornado>=4.3 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 7)) Requirement already satisfied: pandas==0.18 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 8)) Requirement already satisfied: seaborn>=0.7.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 9)) Requirement already satisfied: brewer2mpl>=1.4 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 10)) Requirement already satisfied: dill>=0.2.5 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 11)) Requirement already satisfied: sphinxcontrib-napoleon>=0.5.2 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 12)) Requirement already satisfied: pypandoc in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from -r lib/docs/requirements.txt (line 13)) Requirement already satisfied: six>=1.5 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from sphinx>=1.4.5->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: imagesize in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from sphinx>=1.4.5->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: snowballstemmer>=1.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from sphinx>=1.4.5->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: alabaster<0.8,>=0.7 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from 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/user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from sphinx>=1.4.5->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: Pygments>=2.0 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from sphinx>=1.4.5->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: docutils>=0.11 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from sphinx>=1.4.5->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: typing; python_version < "3.5" in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from sphinx>=1.4.5->-r lib/docs/requirements.txt (line 1)) Requirement already satisfied: pexpect; sys_platform != "win32" in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from ipython->-r lib/docs/requirements.txt (line 2)) Requirement already satisfied: simplegeneric>0.8 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from ipython->-r lib/docs/requirements.txt (line 2)) 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Requirement already satisfied: pytz in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from matplotlib>=2.0.0->-r lib/docs/requirements.txt (line 5)) Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from matplotlib>=2.0.0->-r lib/docs/requirements.txt (line 5)) Requirement already satisfied: backports-abc>=0.4 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from tornado>=4.3->-r lib/docs/requirements.txt (line 7)) Requirement already satisfied: scipy>=0.14.0 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from seaborn>=0.7.1->-r lib/docs/requirements.txt (line 9)) Requirement already satisfied: pockets>=0.3 in /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages (from sphinxcontrib-napoleon>=0.5.2->-r lib/docs/requirements.txt (line 12)) Requirement already satisfied: wheel>=0.25.0 in 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Successfully installed sphinx-1.8.5 You are using pip version 9.0.1, however version 19.1.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2019-06-25T07:19:17.209000Z, end-time: 2019-06-25T07:19:17.244000Z, duration: 0, exit-code: 0 cat conf.py # -*- coding: utf-8 -*- # # src documentation build configuration file, created by # sphinx-quickstart on Tue Sep 30 09:45:40 2014. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. import subprocess import sys import os sys.path.append(os.path.abspath("../src/")) p = subprocess.Popen(["./makeAllDocs.sh"]) p.communicate() from unittest.mock import MagicMock class Mock(MagicMock): @classmethod def __getattr__(cls, name): return Mock() MOCK_MODULES = ['pycuda', 'pycuda.driver', 'pycuda.compiler', 'pycuda.autoinit', 'h5py', 'brewer2mpl', 'matplotlib', 'matplotlib.pyplot', 'matplotlib.colors', 'matplotlib.axes', 'scipy', 'scipy.stats', 'matplotlib.patches', 'scipy.ndimage', 'scipy.ndimage.filters', 'iminuit', 'mpl_toolkits', 'mpl_toolkits.mplot3d', 'mpl_toolkits.axes_grid1', 'mpl_toolkits.axes_grid1.inset_locator', 'pandoc', 'pypandoc'] sys.modules.update((mod_name, Mock()) for mod_name in MOCK_MODULES) # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. #sys.path.insert(0, os.path.abspath('.')) # -- General configuration ------------------------------------------------ # If your documentation needs a minimal Sphinx version, state it here. #needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.autodoc', 'sphinx.ext.viewcode', 'sphinxcontrib.napoleon', 'sphinx.ext.mathjax', 'sphinx.ext.intersphinx', 'sphinx.ext.autosectionlabel', ] # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix of source filenames. source_suffix = '.rst' # The encoding of source files. #source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'XFEL Detector Tools' copyright = u'2014, European X-ray Free Electron Laser Facility GmbH' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. version = '' # The full version, including alpha/beta/rc tags. release = '' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. #language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: #today = '' # Else, today_fmt is used as the format for a strftime call. #today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. exclude_patterns = ['_build'] # The reST default role (used for this markup: `text`) to use for all # documents. #default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. #add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). #add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. #show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. #modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. #keep_warnings = False # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. #html_theme_options = {} # Add any paths that contain custom themes here, relative to this directory. #html_theme_path = [] # The name for this set of Sphinx documents. If None, it defaults to # " v documentation". #html_title = None # A shorter title for the navigation bar. Default is the same as html_title. #html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. #html_logo = None # The name of an image file (within the static path) to use as favicon of the # docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. #html_favicon = None # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the documentation. #html_extra_path = [] # If not '', a 'Last updated on:' timestamp is inserted at every page bottom, # using the given strftime format. #html_last_updated_fmt = '%b %d, %Y' # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. #html_use_smartypants = True # Custom sidebar templates, maps document names to template names. #html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. #html_additional_pages = {} # If false, no module index is generated. #html_domain_indices = True # If false, no index is generated. #html_use_index = True # If true, the index is split into individual pages for each letter. #html_split_index = False # If true, links to the reST sources are added to the pages. #html_show_sourcelink = True # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. #html_show_sphinx = True # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. #html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. #html_use_opensearch = '' # This is the file name suffix for HTML files (e.g. ".xhtml"). #html_file_suffix = None # Output file base name for HTML help builder. htmlhelp_basename = 'srcdoc' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). #'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). #'pointsize': '10pt', # Additional stuff for the LaTeX preamble. #'preamble': '', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ ('index', 'src.tex', u'XFEL Detector Tools', u'Steffen Hauf', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. #latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. #latex_use_parts = False # If true, show page references after internal links. #latex_show_pagerefs = False # If true, show URL addresses after external links. #latex_show_urls = False # Documents to append as an appendix to all manuals. #latex_appendices = [] # If false, no module index is generated. #latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ ('index', 'src', u'XFEL Detector Tools', [u'Author'], 1) ] # If true, show URL addresses after external links. #man_show_urls = False # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ ('index', 'src', u'XFEL Detector Tools', u'Author', 'src', 'One line description of project.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. #texinfo_appendices = [] # If false, no module index is generated. #texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. #texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. #texinfo_no_detailmenu = False # -- Options for Epub output ---------------------------------------------- # Bibliographic Dublin Core info. epub_title = u'XFEL Detector Tools' epub_author = u'Steffen Hauf' epub_publisher = u'European X-ray Free Electron Laser GmbH' epub_copyright = u'2014, Steffen Hauf' # The basename for the epub file. It defaults to the project name. #epub_basename = u'src' # The HTML theme for the epub output. Since the default themes are not optimized # for small screen space, using the same theme for HTML and epub output is # usually not wise. This defaults to 'epub', a theme designed to save visual # space. #epub_theme = 'epub' # The language of the text. It defaults to the language option # or en if the language is not set. #epub_language = '' # The scheme of the identifier. Typical schemes are ISBN or URL. #epub_scheme = '' # The unique identifier of the text. This can be a ISBN number # or the project homepage. #epub_identifier = '' # A unique identification for the text. #epub_uid = '' # A tuple containing the cover image and cover page html template filenames. #epub_cover = () # A sequence of (type, uri, title) tuples for the guide element of content.opf. #epub_guide = () # HTML files that should be inserted before the pages created by sphinx. # The format is a list of tuples containing the path and title. #epub_pre_files = [] # HTML files shat should be inserted after the pages created by sphinx. # The format is a list of tuples containing the path and title. #epub_post_files = [] # A list of files that should not be packed into the epub file. epub_exclude_files = ['search.html'] # The depth of the table of contents in toc.ncx. #epub_tocdepth = 3 # Allow duplicate toc entries. #epub_tocdup = True # Choose between 'default' and 'includehidden'. #epub_tocscope = 'default' # Fix unsupported image types using the PIL. #epub_fix_images = False # Scale large images. #epub_max_image_width = 0 # How to display URL addresses: 'footnote', 'no', or 'inline'. #epub_show_urls = 'inline' # If false, no index is generated. #epub_use_index = True autoclass_content = 'both' napoleon_google_docstring = True napoleon_numpy_docstring = True napoleon_include_private_with_doc = True napoleon_include_special_with_doc = False napoleon_use_admonition_for_examples = False napoleon_use_admonition_for_notes = False napoleon_use_admonition_for_references = False napoleon_use_ivar = False napoleon_use_param = True napoleon_use_rtype = True intersphinx_mapping = {'python': ('http://docs.python.org/2.7', None), 'numpy': ('http://docs.scipy.org/doc/numpy/', None), 'scipy': ('http://docs.scipy.org/doc/scipy/reference/', None), 'matplotlib': ('http://matplotlib.sourceforge.net/', None)} ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix else: SUFFIX = source_suffix[0] else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') html_static_path.append('/rtd_root/readthedocs/templates/sphinx/_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = False if 'html_theme' in globals(): if html_theme in ['default']: # Allow people to bail with a hack of having an html_style if not 'html_style' in globals(): import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True else: import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.org/websupport' if 'http' not in settings.MEDIA_URL: websupport2_static_url = '/static/' else: websupport2_static_url = '/media//static' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'MEDIA_URL': "/media/", 'PRODUCTION_DOMAIN': "exflrtd.desy.de", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ], 'downloads': [ ("pdf", "//exflrtd.desy.de/projects/pydetlib/downloads/pdf/latest/"), ("htmlzip", "//exflrtd.desy.de/projects/pydetlib/downloads/htmlzip/latest/"), ("epub", "//exflrtd.desy.de/projects/pydetlib/downloads/epub/latest/"), ], 'subprojects': [ ], 'slug': 'pydetlib', 'name': u'PyDetLib', 'rtd_language': u'en', 'canonical_url': 'http://exflrtd.desy.de/docs/pydetlib/en/latest/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/doc/', 'api_host': 'https://readthedocs.org', 'github_user': 'None', 'github_repo': 'None', 'github_version': 'fix/remove_rst_files', 'display_github': False, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'fix/remove_rst_files', 'display_bitbucket': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-1', 'commit': 'be29d63c', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): extensions.append("readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] [rtd-command-info] start-time: 2019-06-25T07:19:18.640000Z, end-time: 2019-06-25T07:20:37.899000Z, duration: 79, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/sphinx-build -T -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 mkdir: cannot create directory ‘_notebooks’: File exists [NbConvertApp] Converting notebook ../examples/gainMapStability.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in gainMapStability_files/ [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Writing 48113 bytes to ./gainMapStability.rst [NbConvertApp] Converting notebook ../examples/DataGeneratorExample.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in DataGeneratorExample_files/ [NbConvertApp] Making directory ./DataGeneratorExample_files [NbConvertApp] Writing 1984559 bytes to ./DataGeneratorExample.rst [NbConvertApp] Converting notebook ../examples/calculatorCreation.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Writing 15602 bytes to ./calculatorCreation.rst [NbConvertApp] Converting notebook ../examples/PlotExamples.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in PlotExamples_files/ [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Writing 23677 bytes to ./PlotExamples.rst Creating file ./api/XFELDetAna.rst. Creating file ./api/XFELDetAna.algorithms.rst. Creating file ./api/XFELDetAna.algorithms.cython.rst. Creating file ./api/XFELDetAna.algorithms.gpu.rst. Creating file ./api/XFELDetAna.algorithms.gpu.kernels.rst. Creating file ./api/XFELDetAna.algorithms.tests.rst. Creating file ./api/XFELDetAna.core.rst. Creating file ./api/XFELDetAna.detectors.rst. Creating file ./api/XFELDetAna.detectors.agipd.rst. Creating file ./api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.kernels.rst. Creating file ./api/XFELDetAna.detectors.agipd.tests.rst. Creating file ./api/XFELDetAna.detectors.dssc.rst. Creating file ./api/XFELDetAna.detectors.edf_data.rst. Creating file ./api/XFELDetAna.detectors.epix.rst. Creating file ./api/XFELDetAna.detectors.fastccd.rst. Creating file ./api/XFELDetAna.detectors.generator.rst. Creating file ./api/XFELDetAna.detectors.jungfrau.rst. Creating file ./api/XFELDetAna.detectors.lpd.rst. Creating file ./api/XFELDetAna.detectors.pnccd.rst. Creating file ./api/XFELDetAna.plotting.rst. Creating file ./api/XFELDetAna.util.rst. Creating file ./api/modules.rst. loading translations [en]... done making output directory... loading pickled environment... done loading intersphinx inventory from http://matplotlib.sourceforge.net/objects.inv... intersphinx inventory has moved: http://matplotlib.sourceforge.net/objects.inv -> https://matplotlib.org/objects.inv loading intersphinx inventory from http://docs.scipy.org/doc/scipy/reference/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/scipy/reference/objects.inv -> https://docs.scipy.org/doc/scipy/reference/objects.inv loading intersphinx inventory from http://docs.python.org/2.7/objects.inv... intersphinx inventory has moved: http://docs.python.org/2.7/objects.inv -> https://docs.python.org/2.7/objects.inv loading intersphinx inventory from http://docs.scipy.org/doc/numpy/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/numpy/objects.inv -> https://docs.scipy.org/doc/numpy/objects.inv building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 30 source files that are out of date updating environment: [] 0 added, 28 changed, 3 removed reading sources... [ 3%] _notebooks/DataGeneratorExample reading sources... [ 7%] _notebooks/PlotExamples reading sources... [ 10%] _notebooks/calculatorCreation reading sources... [ 14%] _notebooks/gainMapStability reading sources... [ 17%] _notebooks/index reading sources... [ 21%] api/XFELDetAna Plotting not available No module named 'matplotlib.collections' reading sources... [ 25%] api/XFELDetAna.algorithms reading sources... [ 28%] api/XFELDetAna.algorithms.gpu reading sources... [ 32%] api/XFELDetAna.algorithms.gpu.kernels reading sources... [ 35%] api/XFELDetAna.algorithms.tests reading sources... [ 39%] api/XFELDetAna.core reading sources... [ 42%] api/XFELDetAna.detectors reading sources... [ 46%] api/XFELDetAna.detectors.agipd reading sources... [ 50%] api/XFELDetAna.detectors.agipd.dyrange_algorithms reading sources... [ 53%] api/XFELDetAna.detectors.agipd.gpu reading sources... [ 57%] api/XFELDetAna.detectors.agipd.gpu.kernels reading sources... [ 60%] api/XFELDetAna.detectors.agipd.tests reading sources... [ 64%] api/XFELDetAna.detectors.dssc reading sources... [ 67%] api/XFELDetAna.detectors.edf_data reading sources... [ 71%] api/XFELDetAna.detectors.epix reading sources... [ 75%] api/XFELDetAna.detectors.fastccd reading sources... [ 78%] api/XFELDetAna.detectors.generator reading sources... [ 82%] api/XFELDetAna.detectors.jungfrau reading sources... [ 85%] api/XFELDetAna.detectors.lpd reading sources... [ 89%] api/XFELDetAna.detectors.pnccd reading sources... [ 92%] api/XFELDetAna.plotting reading sources... [ 96%] api/XFELDetAna.util reading sources... [100%] api/modules /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. RemovedInSphinx20Warning) /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:18: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:24: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:44: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:48: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:54: WARNING: Unknown interpreted text role "raw-latex". WARNING: autodoc: failed to import module 'xfelpycaltools' from module 'XFELDetAna'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst:16: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst:45: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:7: WARNING: toctree contains reference to nonexisting document 'api/XFELDetAna.algorithms.cython' WARNING: autodoc: failed to import module 'characterize_cti' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'characterize_noise' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'characterize_relgain' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_cti' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_offset' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_relgain' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correction' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator:38: WARNING: Unknown interpreted text role "method". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator.get:26: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: autodoc: failed to import module 'statistics' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:88: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/gpu/correct_common_mode.py:docstring of XFELDetAna.algorithms.gpu.correct_common_mode._gpuCommonMode:11: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:12: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:56: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst:49: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst WARNING: autodoc: failed to import module 'test_characterize_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_characterize_noise' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_rel_gain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_characterize_split_events' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_common_mode' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_correct_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_relgain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_statistics' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_unitary' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'testing_base' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:69: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/core/reader.py:docstring of XFELDetAna.core.reader.ChunkReader.readChunks:8: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:34: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst:20: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst WARNING: autodoc: failed to import module 'characterize_dynrange' from module 'XFELDetAna.detectors.agipd'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'threshold_gain' from module 'XFELDetAna.detectors.agipd'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:38: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:15: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:29: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:15: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:29: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:7: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:11: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:7: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:11: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst:24: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst:12: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst:21: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.kernels.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.kernels.rst:14: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst WARNING: autodoc: failed to import module 'test_threshold_gain' from module 'XFELDetAna.detectors.agipd.tests'; the following exception was raised: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.tests.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.tests.rst:14: 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unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile:31: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile:44: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile:50: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.GetData:4: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.GetData:10: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.GetData:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:3: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:5: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:31: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.edf_data.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.dssc.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.edf_data.rst:24: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.dssc.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.epix.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.edf_data.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.epix.rst:14: WARNING: duplicate label module contents, other instance in 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Please use app.add_stylesheet() instead. app.builder.css_files.insert(0, theme_css) WARNING: html_static_path entry '/user_builds/pydetlib/checkouts/latest/lib/docs/_static' does not exist WARNING: html_static_path entry '/rtd_root/readthedocs/templates/sphinx/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 142 warnings. The HTML pages are in _build/html. Copying readthedocs-dynamic-include.js_t... done Copying readthedocs-data.js_t... done Copying searchtools.js_t... done /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/readthedocs_ext/readthedocs.py:122: RemovedInSphinx20Warning: app.info() is now deprecated. Use sphinx.util.logging instead. app.info(bold('Copying %s... ' % file), nonl=True) /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/readthedocs_ext/readthedocs.py:136: RemovedInSphinx20Warning: app.info() is now deprecated. Use sphinx.util.logging instead. app.info('done') [rtd-command-info] start-time: 2019-06-25T07:20:53.069000Z, end-time: 2019-06-25T07:21:48.270000Z, duration: 55, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/sphinx-build -T -b json -d _build/doctrees-json -D language=en . _build/json Running Sphinx v1.8.5 mkdir: cannot create directory ‘_notebooks’: File exists [NbConvertApp] Converting notebook ../examples/gainMapStability.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in gainMapStability_files/ [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Writing 48113 bytes to ./gainMapStability.rst [NbConvertApp] Converting notebook ../examples/DataGeneratorExample.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in DataGeneratorExample_files/ [NbConvertApp] Making directory ./DataGeneratorExample_files [NbConvertApp] Writing 1984559 bytes to ./DataGeneratorExample.rst [NbConvertApp] Converting notebook ../examples/calculatorCreation.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Writing 15602 bytes to ./calculatorCreation.rst [NbConvertApp] Converting notebook ../examples/PlotExamples.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in PlotExamples_files/ [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Writing 23677 bytes to ./PlotExamples.rst Creating file ./api/XFELDetAna.rst. Creating file ./api/XFELDetAna.algorithms.rst. Creating file ./api/XFELDetAna.algorithms.cython.rst. Creating file ./api/XFELDetAna.algorithms.gpu.rst. Creating file ./api/XFELDetAna.algorithms.gpu.kernels.rst. Creating file ./api/XFELDetAna.algorithms.tests.rst. Creating file ./api/XFELDetAna.core.rst. Creating file ./api/XFELDetAna.detectors.rst. Creating file ./api/XFELDetAna.detectors.agipd.rst. Creating file ./api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.kernels.rst. Creating file ./api/XFELDetAna.detectors.agipd.tests.rst. Creating file ./api/XFELDetAna.detectors.dssc.rst. Creating file ./api/XFELDetAna.detectors.edf_data.rst. Creating file ./api/XFELDetAna.detectors.epix.rst. Creating file ./api/XFELDetAna.detectors.fastccd.rst. Creating file ./api/XFELDetAna.detectors.generator.rst. Creating file ./api/XFELDetAna.detectors.jungfrau.rst. Creating file ./api/XFELDetAna.detectors.lpd.rst. Creating file ./api/XFELDetAna.detectors.pnccd.rst. Creating file ./api/XFELDetAna.plotting.rst. Creating file ./api/XFELDetAna.util.rst. Creating file ./api/modules.rst. loading translations [en]... done making output directory... loading pickled environment... done loading intersphinx inventory from http://matplotlib.sourceforge.net/objects.inv... intersphinx inventory has moved: http://matplotlib.sourceforge.net/objects.inv -> https://matplotlib.org/objects.inv loading intersphinx inventory from http://docs.scipy.org/doc/numpy/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/numpy/objects.inv -> https://docs.scipy.org/doc/numpy/objects.inv loading intersphinx inventory from http://docs.python.org/2.7/objects.inv... intersphinx inventory has moved: http://docs.python.org/2.7/objects.inv -> https://docs.python.org/2.7/objects.inv loading intersphinx inventory from http://docs.scipy.org/doc/scipy/reference/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/scipy/reference/objects.inv -> https://docs.scipy.org/doc/scipy/reference/objects.inv building [mo]: targets for 0 po files that are out of date building [json]: targets for 30 source files that are out of date updating environment: [] 0 added, 28 changed, 3 removed reading sources... [ 3%] _notebooks/DataGeneratorExample reading sources... [ 7%] _notebooks/PlotExamples reading sources... [ 10%] _notebooks/calculatorCreation reading sources... [ 14%] _notebooks/gainMapStability reading sources... [ 17%] _notebooks/index reading sources... [ 21%] api/XFELDetAna Plotting not available No module named 'matplotlib.collections' reading sources... [ 25%] api/XFELDetAna.algorithms reading sources... [ 28%] api/XFELDetAna.algorithms.gpu reading sources... [ 32%] api/XFELDetAna.algorithms.gpu.kernels reading sources... [ 35%] api/XFELDetAna.algorithms.tests reading sources... [ 39%] api/XFELDetAna.core reading sources... [ 42%] api/XFELDetAna.detectors reading sources... [ 46%] api/XFELDetAna.detectors.agipd reading sources... [ 50%] api/XFELDetAna.detectors.agipd.dyrange_algorithms reading sources... [ 53%] api/XFELDetAna.detectors.agipd.gpu reading sources... [ 57%] api/XFELDetAna.detectors.agipd.gpu.kernels reading sources... [ 60%] api/XFELDetAna.detectors.agipd.tests reading sources... [ 64%] api/XFELDetAna.detectors.dssc reading sources... [ 67%] api/XFELDetAna.detectors.edf_data reading sources... [ 71%] api/XFELDetAna.detectors.epix reading sources... [ 75%] api/XFELDetAna.detectors.fastccd reading sources... [ 78%] api/XFELDetAna.detectors.generator reading sources... [ 82%] api/XFELDetAna.detectors.jungfrau reading sources... [ 85%] api/XFELDetAna.detectors.lpd reading sources... [ 89%] api/XFELDetAna.detectors.pnccd reading sources... [ 92%] api/XFELDetAna.plotting reading sources... [ 96%] api/XFELDetAna.util reading sources... [100%] api/modules /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. RemovedInSphinx20Warning) /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:18: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:24: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:44: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:48: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:54: WARNING: Unknown interpreted text role "raw-latex". WARNING: autodoc: failed to import module 'xfelpycaltools' from module 'XFELDetAna'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst:16: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst:45: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:7: WARNING: toctree contains reference to nonexisting document 'api/XFELDetAna.algorithms.cython' WARNING: autodoc: failed to import module 'characterize_cti' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'characterize_noise' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'characterize_relgain' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_cti' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_offset' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_relgain' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correction' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator:38: WARNING: Unknown interpreted text role "method". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator.get:26: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: autodoc: failed to import module 'statistics' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:88: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/gpu/correct_common_mode.py:docstring of XFELDetAna.algorithms.gpu.correct_common_mode._gpuCommonMode:11: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:12: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:56: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst:49: WARNING: 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raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_common_mode' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_correct_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_relgain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_statistics' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_unitary' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'testing_base' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:69: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/core/reader.py:docstring of XFELDetAna.core.reader.ChunkReader.readChunks:8: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:5: WARNING: duplicate label 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'threshold_gain' from module 'XFELDetAna.detectors.agipd'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:38: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:15: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Block quote ends without a 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XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:15: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of 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unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:29: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:7: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:11: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:7: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:11: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst:24: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst:12: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst:21: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.kernels.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.kernels.rst:14: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst WARNING: autodoc: failed to import module 'test_threshold_gain' from module 'XFELDetAna.detectors.agipd.tests'; the following exception was raised: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.tests.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.tests.rst:14: 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unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile:31: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile:44: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile:50: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.GetData:4: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.GetData:10: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.GetData:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:3: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:5: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:31: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.edf_data.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.dssc.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.edf_data.rst:24: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.dssc.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.epix.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.edf_data.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.epix.rst:14: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.edf_data.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.fastccd.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.epix.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.fastccd.rst:19: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.epix.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.generator.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.fastccd.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.generator.rst:14: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.fastccd.rst WARNING: autodoc: failed to import module 'characterize_jfgain' from module 'XFELDetAna.detectors.jungfrau'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'fitFuncs' from module 'XFELDetAna.detectors.jungfrau'; the following exception was raised: No module named 'iminuit.util' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/jf_chunk_reader.py:docstring of XFELDetAna.detectors.jungfrau.jf_chunk_reader.JFChunkReader.readChunks:10: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.generator.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst:39: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.generator.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.lpd.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.lpd.rst:14: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.pnccd.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.lpd.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.pnccd.rst:19: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.lpd.rst WARNING: autodoc: failed to import module 'heatmap' from module 'XFELDetAna.plotting'; the following exception was raised: No module named 'matplotlib.collections' WARNING: autodoc: failed to import module 'multidim' from module 'XFELDetAna.plotting'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.pnccd.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst:34: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.pnccd.rst WARNING: autodoc: failed to import module 'cluster' from module 'XFELDetAna.util'; the following exception was raised: No module named 'psutil' WARNING: __all__ should be a list of strings, not .wrapped at 0x7f529e396e18> (in module XFELDetAna.util.knumpy) -- ignoring __all__ /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:34: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... 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[rtd-command-info] start-time: 2019-06-25T07:21:55.774000Z, end-time: 2019-06-25T07:22:45.273000Z, duration: 49, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.8.5 mkdir: cannot create directory ‘_notebooks’: File exists [NbConvertApp] Converting notebook ../examples/gainMapStability.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in gainMapStability_files/ [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Writing 48113 bytes to ./gainMapStability.rst [NbConvertApp] Converting notebook ../examples/DataGeneratorExample.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in DataGeneratorExample_files/ [NbConvertApp] Making directory ./DataGeneratorExample_files [NbConvertApp] Writing 1984559 bytes to ./DataGeneratorExample.rst [NbConvertApp] Converting notebook ../examples/calculatorCreation.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Writing 15602 bytes to ./calculatorCreation.rst [NbConvertApp] Converting notebook ../examples/PlotExamples.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in PlotExamples_files/ [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Writing 23677 bytes to ./PlotExamples.rst Creating file ./api/XFELDetAna.rst. Creating file ./api/XFELDetAna.algorithms.rst. Creating file ./api/XFELDetAna.algorithms.cython.rst. Creating file ./api/XFELDetAna.algorithms.gpu.rst. Creating file ./api/XFELDetAna.algorithms.gpu.kernels.rst. Creating file ./api/XFELDetAna.algorithms.tests.rst. Creating file ./api/XFELDetAna.core.rst. Creating file ./api/XFELDetAna.detectors.rst. Creating file ./api/XFELDetAna.detectors.agipd.rst. Creating file ./api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.kernels.rst. Creating file ./api/XFELDetAna.detectors.agipd.tests.rst. Creating file ./api/XFELDetAna.detectors.dssc.rst. Creating file ./api/XFELDetAna.detectors.edf_data.rst. Creating file ./api/XFELDetAna.detectors.epix.rst. Creating file ./api/XFELDetAna.detectors.fastccd.rst. Creating file ./api/XFELDetAna.detectors.generator.rst. Creating file ./api/XFELDetAna.detectors.jungfrau.rst. Creating file ./api/XFELDetAna.detectors.lpd.rst. Creating file ./api/XFELDetAna.detectors.pnccd.rst. Creating file ./api/XFELDetAna.plotting.rst. Creating file ./api/XFELDetAna.util.rst. Creating file ./api/modules.rst. loading translations [en]... done making output directory... loading pickled environment... done loading intersphinx inventory from http://docs.scipy.org/doc/scipy/reference/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/scipy/reference/objects.inv -> https://docs.scipy.org/doc/scipy/reference/objects.inv loading intersphinx inventory from http://docs.scipy.org/doc/numpy/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/numpy/objects.inv -> https://docs.scipy.org/doc/numpy/objects.inv loading intersphinx inventory from http://docs.python.org/2.7/objects.inv... intersphinx inventory has moved: http://docs.python.org/2.7/objects.inv -> https://docs.python.org/2.7/objects.inv loading intersphinx inventory from http://matplotlib.sourceforge.net/objects.inv... intersphinx inventory has moved: http://matplotlib.sourceforge.net/objects.inv -> https://matplotlib.org/objects.inv building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: [] 0 added, 28 changed, 3 removed reading sources... [ 3%] _notebooks/DataGeneratorExample reading sources... [ 7%] _notebooks/PlotExamples reading sources... [ 10%] _notebooks/calculatorCreation reading sources... [ 14%] _notebooks/gainMapStability reading sources... [ 17%] _notebooks/index reading sources... [ 21%] api/XFELDetAna Plotting not available No module named 'matplotlib.collections' reading sources... [ 25%] api/XFELDetAna.algorithms reading sources... [ 28%] api/XFELDetAna.algorithms.gpu reading sources... [ 32%] api/XFELDetAna.algorithms.gpu.kernels reading sources... [ 35%] api/XFELDetAna.algorithms.tests reading sources... [ 39%] api/XFELDetAna.core reading sources... [ 42%] api/XFELDetAna.detectors reading sources... [ 46%] api/XFELDetAna.detectors.agipd reading sources... [ 50%] api/XFELDetAna.detectors.agipd.dyrange_algorithms reading sources... [ 53%] api/XFELDetAna.detectors.agipd.gpu reading sources... [ 57%] api/XFELDetAna.detectors.agipd.gpu.kernels reading sources... [ 60%] api/XFELDetAna.detectors.agipd.tests reading sources... [ 64%] api/XFELDetAna.detectors.dssc reading sources... [ 67%] api/XFELDetAna.detectors.edf_data reading sources... [ 71%] api/XFELDetAna.detectors.epix reading sources... [ 75%] api/XFELDetAna.detectors.fastccd reading sources... [ 78%] api/XFELDetAna.detectors.generator reading sources... [ 82%] api/XFELDetAna.detectors.jungfrau reading sources... [ 85%] api/XFELDetAna.detectors.lpd reading sources... [ 89%] api/XFELDetAna.detectors.pnccd reading sources... [ 92%] api/XFELDetAna.plotting reading sources... [ 96%] api/XFELDetAna.util reading sources... [100%] api/modules /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. 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WARNING: autodoc: failed to import module 'xfelpycaltools' from module 'XFELDetAna'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst:16: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst:45: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:7: WARNING: toctree contains reference to nonexisting document 'api/XFELDetAna.algorithms.cython' WARNING: autodoc: failed to import module 'characterize_cti' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'characterize_noise' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'characterize_relgain' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_cti' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_offset' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_relgain' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correction' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator:38: WARNING: Unknown interpreted text role "method". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator.get:26: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: autodoc: failed to import module 'statistics' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:88: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/gpu/correct_common_mode.py:docstring of XFELDetAna.algorithms.gpu.correct_common_mode._gpuCommonMode:11: WARNING: Unexpected indentation. 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raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_common_mode' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_correct_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_relgain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_statistics' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_unitary' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'testing_base' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:69: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/core/reader.py:docstring of XFELDetAna.core.reader.ChunkReader.readChunks:8: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:5: WARNING: duplicate label 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'threshold_gain' from module 'XFELDetAna.detectors.agipd'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:38: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; 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XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:15: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:22: WARNING: Block quote ends without a blank line; 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XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:7: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:11: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst:24: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst:12: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst:21: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.kernels.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.kernels.rst:14: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst WARNING: autodoc: failed to import module 'test_threshold_gain' from module 'XFELDetAna.detectors.agipd.tests'; the following exception was raised: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.tests.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.tests.rst:14: 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unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile:31: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile:44: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile:50: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.GetData:4: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.GetData:10: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.GetData:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:3: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:5: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:31: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.edf_data.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.dssc.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.edf_data.rst:24: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.dssc.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.epix.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.edf_data.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.epix.rst:14: WARNING: duplicate label module contents, other instance in 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/user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst:39: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.generator.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.lpd.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.lpd.rst:14: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.pnccd.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.lpd.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.pnccd.rst:19: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.lpd.rst WARNING: autodoc: failed to import module 'heatmap' from module 'XFELDetAna.plotting'; the following exception was raised: No module named 'matplotlib.collections' WARNING: autodoc: failed to import module 'multidim' from module 'XFELDetAna.plotting'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.pnccd.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst:34: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.pnccd.rst WARNING: autodoc: failed to import module 'cluster' from module 'XFELDetAna.util'; the following exception was raised: No module named 'psutil' WARNING: __all__ should be a list of strings, not .wrapped at 0x7fc079ce1f28> (in module XFELDetAna.util.knumpy) -- ignoring __all__ /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:34: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation _notebooks/index _notebooks/gainMapStability _notebooks/DataGeneratorExample _notebooks/calculatorCreation _notebooks/PlotExamples api/modules api/XFELDetAna api/XFELDetAna.algorithms api/XFELDetAna.algorithms.gpu api/XFELDetAna.algorithms.gpu.kernels api/XFELDetAna.algorithms.tests api/XFELDetAna.core api/XFELDetAna.detectors api/XFELDetAna.detectors.agipd api/XFELDetAna.detectors.agipd.dyrange_algorithms api/XFELDetAna.detectors.agipd.gpu api/XFELDetAna.detectors.agipd.gpu.kernels api/XFELDetAna.detectors.agipd.tests api/XFELDetAna.detectors.dssc api/XFELDetAna.detectors.edf_data api/XFELDetAna.detectors.epix api/XFELDetAna.detectors.fastccd api/XFELDetAna.detectors.generator api/XFELDetAna.detectors.jungfrau api/XFELDetAna.detectors.lpd api/XFELDetAna.detectors.pnccd api/XFELDetAna.plotting api/XFELDetAna.util writing... done writing additional files... copying images... 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Please use app.add_stylesheet() instead. app.builder.css_files.insert(0, theme_css) WARNING: html_static_path entry '/user_builds/pydetlib/checkouts/latest/lib/docs/_static' does not exist WARNING: html_static_path entry '/rtd_root/readthedocs/templates/sphinx/_static' does not exist done copying extra files... done dumping object inventory... done build succeeded, 142 warnings. The HTML page is in _build/localmedia. [rtd-command-info] start-time: 2019-06-25T07:22:47.592000Z, end-time: 2019-06-25T07:23:36.287000Z, duration: 48, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.8.5 mkdir: cannot create directory ‘_notebooks’: File exists [NbConvertApp] Converting notebook ../examples/gainMapStability.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in gainMapStability_files/ [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Writing 48113 bytes to ./gainMapStability.rst [NbConvertApp] Converting notebook ../examples/DataGeneratorExample.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in DataGeneratorExample_files/ [NbConvertApp] Making directory ./DataGeneratorExample_files [NbConvertApp] Writing 1984559 bytes to ./DataGeneratorExample.rst [NbConvertApp] Converting notebook ../examples/calculatorCreation.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Writing 15602 bytes to ./calculatorCreation.rst [NbConvertApp] Converting notebook ../examples/PlotExamples.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in PlotExamples_files/ [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Writing 23677 bytes to ./PlotExamples.rst Creating file ./api/XFELDetAna.rst. Creating file ./api/XFELDetAna.algorithms.rst. Creating file ./api/XFELDetAna.algorithms.cython.rst. Creating file ./api/XFELDetAna.algorithms.gpu.rst. Creating file ./api/XFELDetAna.algorithms.gpu.kernels.rst. Creating file ./api/XFELDetAna.algorithms.tests.rst. Creating file ./api/XFELDetAna.core.rst. Creating file ./api/XFELDetAna.detectors.rst. Creating file ./api/XFELDetAna.detectors.agipd.rst. Creating file ./api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.kernels.rst. Creating file ./api/XFELDetAna.detectors.agipd.tests.rst. Creating file ./api/XFELDetAna.detectors.dssc.rst. Creating file ./api/XFELDetAna.detectors.edf_data.rst. Creating file ./api/XFELDetAna.detectors.epix.rst. Creating file ./api/XFELDetAna.detectors.fastccd.rst. Creating file ./api/XFELDetAna.detectors.generator.rst. Creating file ./api/XFELDetAna.detectors.jungfrau.rst. Creating file ./api/XFELDetAna.detectors.lpd.rst. Creating file ./api/XFELDetAna.detectors.pnccd.rst. Creating file ./api/XFELDetAna.plotting.rst. Creating file ./api/XFELDetAna.util.rst. Creating file ./api/modules.rst. loading translations [en]... done making output directory... loading pickled environment... done loading intersphinx inventory from http://docs.scipy.org/doc/numpy/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/numpy/objects.inv -> https://docs.scipy.org/doc/numpy/objects.inv loading intersphinx inventory from http://docs.python.org/2.7/objects.inv... intersphinx inventory has moved: http://docs.python.org/2.7/objects.inv -> https://docs.python.org/2.7/objects.inv loading intersphinx inventory from http://docs.scipy.org/doc/scipy/reference/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/scipy/reference/objects.inv -> https://docs.scipy.org/doc/scipy/reference/objects.inv loading intersphinx inventory from http://matplotlib.sourceforge.net/objects.inv... intersphinx inventory has moved: http://matplotlib.sourceforge.net/objects.inv -> https://matplotlib.org/objects.inv building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: [] 0 added, 28 changed, 3 removed reading sources... [ 3%] _notebooks/DataGeneratorExample reading sources... [ 7%] _notebooks/PlotExamples reading sources... [ 10%] _notebooks/calculatorCreation reading sources... [ 14%] _notebooks/gainMapStability reading sources... [ 17%] _notebooks/index reading sources... [ 21%] api/XFELDetAna Plotting not available No module named 'matplotlib.collections' reading sources... [ 25%] api/XFELDetAna.algorithms reading sources... [ 28%] api/XFELDetAna.algorithms.gpu reading sources... [ 32%] api/XFELDetAna.algorithms.gpu.kernels reading sources... [ 35%] api/XFELDetAna.algorithms.tests reading sources... [ 39%] api/XFELDetAna.core reading sources... [ 42%] api/XFELDetAna.detectors reading sources... [ 46%] api/XFELDetAna.detectors.agipd reading sources... [ 50%] api/XFELDetAna.detectors.agipd.dyrange_algorithms reading sources... [ 53%] api/XFELDetAna.detectors.agipd.gpu reading sources... [ 57%] api/XFELDetAna.detectors.agipd.gpu.kernels reading sources... [ 60%] api/XFELDetAna.detectors.agipd.tests reading sources... [ 64%] api/XFELDetAna.detectors.dssc reading sources... [ 67%] api/XFELDetAna.detectors.edf_data reading sources... [ 71%] api/XFELDetAna.detectors.epix reading sources... [ 75%] api/XFELDetAna.detectors.fastccd reading sources... [ 78%] api/XFELDetAna.detectors.generator reading sources... [ 82%] api/XFELDetAna.detectors.jungfrau reading sources... [ 85%] api/XFELDetAna.detectors.lpd reading sources... [ 89%] api/XFELDetAna.detectors.pnccd reading sources... [ 92%] api/XFELDetAna.plotting reading sources... [ 96%] api/XFELDetAna.util reading sources... [100%] api/modules /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. 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WARNING: autodoc: failed to import module 'xfelpycaltools' from module 'XFELDetAna'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst:16: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst:45: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:7: WARNING: toctree contains reference to nonexisting document 'api/XFELDetAna.algorithms.cython' WARNING: autodoc: failed to import module 'characterize_cti' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'characterize_noise' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'characterize_relgain' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_cti' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_offset' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_relgain' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correction' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator:38: WARNING: Unknown interpreted text role "method". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator.get:26: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: autodoc: failed to import module 'statistics' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:88: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/gpu/correct_common_mode.py:docstring of XFELDetAna.algorithms.gpu.correct_common_mode._gpuCommonMode:11: WARNING: Unexpected indentation. 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raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_common_mode' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_correct_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_relgain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_statistics' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_unitary' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'testing_base' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:69: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/core/reader.py:docstring of XFELDetAna.core.reader.ChunkReader.readChunks:8: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:5: WARNING: duplicate label 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'threshold_gain' from module 'XFELDetAna.detectors.agipd'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:38: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; 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XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:15: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:22: WARNING: Block quote ends without a blank line; 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XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:7: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:11: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst 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WARNING: autodoc: failed to import module 'cluster' from module 'XFELDetAna.util'; the following exception was raised: No module named 'psutil' WARNING: __all__ should be a list of strings, not .wrapped at 0x7f1217de16a8> (in module XFELDetAna.util.knumpy) -- ignoring __all__ /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:34: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst looking for now-outdated files... none found pickling environment... done checking consistency... done processing src.tex...index installation _notebooks/index _notebooks/gainMapStability _notebooks/DataGeneratorExample _notebooks/calculatorCreation _notebooks/PlotExamples api/modules api/XFELDetAna 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[5] [6] Chapter 3. 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[52] [53] [54] [55] [56] [57] Underfull \vbox (badness 1874) detected at line 2319 [58] Underfull \vbox (badness 10000) detected at line 2319 Overfull \vbox (13.68169pt too high) detected at line 2319 [59] [60] [61 <./PlotExamples_2_0.png>] Overfull \vbox (3.1207pt too high) detected at line 2458 [62 <./PlotExamples_4_0.png> <./PlotExamples_4_1.png>] [63 <./PlotExamples_6_0.png> <./PlotExamples_6_1.png >] [64 <./PlotExamples_8_0.png>] [65 <./PlotExamples_8_1.png> <./PlotExamples_8_2.png >] [66 <./PlotExamples_10_0.png> <./PlotExamples_10_1. png>] Overfull \vbox (1.15887pt too high) detected at line 2624 [67 <./PlotExamples_12_0.png>] [68 <./PlotExamples_14_0.png> <./PlotExamples_14_1. png>] [69 <./PlotExamples_16_0.png>] [70 <./PlotExamples_18_0.png>] [71 <./PlotExamples_ 20_0.png>] [72 <./PlotExamples_22_1.png>] [73 <./PlotExamples_ 22_2.png>] [74 <./PlotExamples_24_0.png>] [75 <./PlotExamples_26_0.png>] [76 <./PlotExamples_28_0.png>] [77 <./PlotExamples_30_0.png>] [78 <./PlotExamples_32_0.png>] [79 <./PlotExamples_34_0.png>] [80 <./PlotExamples_36_0.png>] [81 <./PlotExamples_38_0.png>] [82 <./PlotExamples_40_0.png>] [83 <./PlotExamples_ 42_0.png>] [84] Chapter 4. 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Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on src.pdf (152 pages, 2426876 bytes). Transcript written on src.log. [rtd-command-info] start-time: 2019-06-25T07:23:43.840000Z, end-time: 2019-06-25T07:23:43.944000Z, duration: 0, exit-code: 0 makeindex -s python.ist src.idx This is makeindex, version 2.15 [TeX Live 2015/dev] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file src.idx....done (902 entries accepted, 0 rejected). Sorting entries..........done (10393 comparisons). Generating output file src.ind....done (1273 lines written, 0 warnings). Output written in src.ind. Transcript written in src.ilg. 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [3] [4] Chapter 2. [5] [6] Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 143--144 []\T1/ptm/b/n/10 :raw-latex:`\begin{equation*} p'_{i,k}(v_i) = \frac{p_{i,k}(v_ i)}{\sum_{k=-1}^{1} p_{i,k}(v_i) } Underfull \hbox (badness 10000) in paragraph at lines 149--150 []\T1/ptm/b/n/10 :raw-latex:`\begin{equation*} \lan-gle px_{x,y,c} \ran-gle = \ frac{\sum_{i=0}^{N} (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Overfull \hbox (24.44098pt too wide) in paragraph at lines 176--177 []\T1/ptm/b/n/10 :raw-latex:`\begin{equation*} \sigma_{F,k}(\mathrm{ADU}) = \fr ac{R_F*\omega*A_{\gamma}}{E_{\gamma}} [7] Underfull \hbox (badness 10000) in paragraph at lines 182--183 []\T1/ptm/b/n/10 :raw-latex:`\begin{equation*} \sigma_k(\mathrm{ADU}) = \sqrt{\ sigma_{F,k}^2 + (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [8] Underfull \vbox (badness 10000) detected at line 424 Overfull \vbox (2.68169pt too high) detected at line 424 [9] Underfull \vbox (badness 10000) detected at line 424 Overfull \vbox (2.68169pt too high) detected at line 424 [10] Underfull \vbox (badness 10000) detected at line 424 Overfull \vbox (2.68169pt too high) detected at line 424 [11] [12] [13 <./gainMapStability_4_0.png>] Underfull \vbox (badness 10000) detected at line 642 [14] Underfull \vbox (badness 10000) detected at line 642 Overfull \vbox (2.68169pt too high) detected at line 642 [15] [16] Underfull \vbox (badness 10000) detected at line 759 Overfull \vbox (2.68169pt too high) detected at line 759 [17] [18] Underfull \vbox (badness 4060) detected at line 851 [19 <./gainMapStability_9_0.png>] Underfull \vbox (badness 10000) detected at line 851 Overfull \vbox (13.68169pt too high) detected at line 851 [20] [21] Overfull \vbox (2.30649pt too high) detected at line 922 [22 <./gainMapStability_10_0.png>] Underfull \vbox (badness 10000) detected at line 922 Overfull \vbox (2.68169pt too high) detected at line 922 [23] [24] Overfull \vbox (2.89168pt too high) detected at line 965 [25 <./gainMapStability_11_0.png>] [26] [27 <./gainMapStability_12_1.png>] [28 <./gainMapStability_12_2.png>] [29 <./gainMapStability_12_3.png>] [30 <./gainMapStability_12_4.png>] [31 <./gainMapStability_12_5.png>] [32 <./gainMapStability_12_6.png>] [33 <./gainMapStability_12_7.png>] [34 <./gainMapStability_12_8.png>] [35 <./gainMapStability_12_9.png>] Underfull \vbox (badness 10000) detected at line 1015 [36 <./gainMapStability_12_10.png>] [37 <./gainMapStability_13_0.png>] Underfull \vbox (badness 10000) detected at line 1114 Overfull \vbox (2.68169pt too high) detected at line 1114 [38] [39] Underfull \vbox (badness 10000) detected at line 1209 Overfull \vbox (2.68169pt too high) detected at line 1209 [40] [41] [42 <./gainMapStability_16_0.png>] Overfull \vbox (0.98318pt too high) detected at line 1297 [43] [44] Overfull \vbox (1.68164pt too high) detected at line 1447 [45] [46] [47 <./DataGeneratorExample_17_1.png>] Underfull \vbox (badness 10000) detected at line 1681 [48] Underfull \vbox (badness 10000) detected at line 1681 Overfull \vbox (13.68169pt too high) detected at line 1681 [49] Overfull \vbox (1.68161pt too high) detected at line 1733 [50] [51] [52] [53] [54] [55] [56] [57] Underfull \vbox (badness 1874) detected at line 2319 [58] Underfull \vbox (badness 10000) detected at line 2319 Overfull \vbox (13.68169pt too high) detected at line 2319 [59] [60] [61 <./PlotExamples_2_0.png>] Overfull \vbox (3.1207pt too high) detected at line 2458 [62 <./PlotExamples_4_0.png> <./PlotExamples_4_1.png>] [63 <./PlotExamples_6_0.png> <./PlotExamples_6_1.png >] [64 <./PlotExamples_8_0.png>] [65 <./PlotExamples_8_1.png> <./PlotExamples_8_2.png >] [66 <./PlotExamples_10_0.png> <./PlotExamples_10_1. png>] Overfull \vbox (1.15887pt too high) detected at line 2624 [67 <./PlotExamples_12_0.png>] [68 <./PlotExamples_14_0.png> <./PlotExamples_14_1. png>] [69 <./PlotExamples_16_0.png>] [70 <./PlotExamples_18_0.png>] [71 <./PlotExamples_ 20_0.png>] [72 <./PlotExamples_22_1.png>] [73 <./PlotExamples_ 22_2.png>] [74 <./PlotExamples_24_0.png>] [75 <./PlotExamples_26_0.png>] [76 <./PlotExamples_28_0.png>] [77 <./PlotExamples_30_0.png>] [78 <./PlotExamples_32_0.png>] [79 <./PlotExamples_34_0.png>] [80 <./PlotExamples_36_0.png>] [81 <./PlotExamples_38_0.png>] [82 <./PlotExamples_40_0.png>] [83 <./PlotExamples_ 42_0.png>] [84] Chapter 4. [85] Overfull \hbox (92.52463pt too wide) in paragraph at lines 3178--3178 []\T1/ptm/m/it/10 datalength\T1/ptm/m/n/10 , Overfull \hbox (58.53479pt too wide) in paragraph at lines 3178--3178 \T1/ptm/m/it/10 re- Overfull \hbox (67.24475pt too wide) in paragraph at lines 3178--3178 \T1/ptm/m/it/10 turn- Overfull \hbox (100.9144pt too wide) in paragraph at lines 3178--3178 \T1/ptm/m/it/10 Stats=False\T1/pcr/m/n/10 ) Overfull \hbox (68.52463pt too wide) in paragraph at lines 3184--3184 []\T1/ptm/m/it/10 datalength\T1/ptm/m/n/10 , Overfull \hbox (34.53479pt too wide) in paragraph at lines 3184--3184 \T1/ptm/m/it/10 re- Overfull \hbox (43.24475pt too wide) in paragraph at lines 3184--3184 \T1/ptm/m/it/10 turn- Overfull \hbox (48.69469pt too wide) in paragraph at lines 3184--3184 \T1/ptm/m/it/10 Stats\T1/pcr/m/n/10 ) Overfull \hbox (72.02463pt too wide) in paragraph at lines 3190--3190 []\T1/ptm/m/it/10 datalength\T1/pcr/m/n/10 ) Overfull \hbox (21.5249pt too wide) in paragraph at lines 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noiseMap=None\T1/pcr/m/n/10 ) [86] Overfull \hbox (19.07484pt too wide) in paragraph at lines 3288--3288 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , Overfull \hbox (15.45485pt too wide) in paragraph at lines 3288--3288 \T1/ptm/m/it/10 mem- Overfull \hbox (16.30455pt too wide) in paragraph at lines 3288--3288 \T1/ptm/m/it/10 Cells\T1/ptm/m/n/10 , Overfull \hbox (17.4148pt too wide) in paragraph at lines 3288--3288 \T1/ptm/m/it/10 gains\T1/ptm/m/n/10 , Overfull \hbox (40.27449pt too wide) in paragraph at lines 3288--3288 \T1/ptm/m/it/10 tile_dim=4\T1/ptm/m/n/10 , Overfull \hbox (28.60474pt too wide) in paragraph at lines 3288--3288 \T1/ptm/m/it/10 zDim=1\T1/ptm/m/n/10 , Overfull \hbox (14.7948pt too wide) in paragraph at lines 3288--3288 \T1/ptm/m/it/10 keep- Overfull \hbox (56.90466pt too wide) in paragraph at lines 3288--3288 \T1/ptm/m/it/10 OnGpu=False\T1/pcr/m/n/10 ) [87] Underfull \hbox (badness 10000) in paragraph at lines 3332--3332 \T1/ptm/m/it/10 crange=None\T1/ptm/m/n/10 , 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dType=\T1/ptm/m/n/10 , Overfull \hbox (13.76465pt too wide) in paragraph at lines 3491--3491 \T1/ptm/m/it/10 **kwargs\T1/pcr/m/n/10 ) [90] Underfull \hbox (badness 10000) in paragraph at lines 3628--3628 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , \T1/ptm/m/it/10 bins\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3628--3628 \T1/ptm/m/it/10 range\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , [91] Underfull \hbox (badness 5954) in paragraph at lines 3682--3684 []\T1/ptm/m/n/10 complete sen-sor but on a per- [92] [93] [94] Underfull \hbox (badness 10000) in paragraph at lines 4050--4051 []\T1/pcr/b/n/10 function. 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\T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , \T1/ptm/m/it/10 par-al-lel=Tru e\T1/ptm/m/n/10 , [101] [102] Underfull \hbox (badness 10000) in paragraph at lines 5035--5035 []\T1/ptm/m/it/10 functionsToProfile\T1/ptm/m/n/10 , \T1/ptm/m/it/10 val-uesTo- VaryCpu\T1/ptm/m/n/10 , \T1/ptm/m/it/10 val-uesTo- Underfull \hbox (badness 10000) in paragraph at lines 5035--5035 \T1/ptm/m/it/10 VaryGpu=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nRe-peats=None\T1/ ptm/m/n/10 , \T1/ptm/m/it/10 val-uesTo-P-re- Underfull \hbox (badness 7081) in paragraph at lines 5047--5047 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 read-Fun\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 size\T1/ptm/m/n/10 , \T1/ptm/m/it/10 chunk-Size\T1/ptm/m/n /10 , \T1/ptm/m/it/10 *args\T1/ptm/m/n/10 , [103] Overfull \hbox (131.85474pt too wide) in paragraph at lines 5156--5156 []\T1/ptm/m/it/10 asic, Overfull \hbox (124.35486pt too wide) in paragraph at lines 5156--5156 \T1/ptm/m/it/10 in- Overfull 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at lines 5579--5579 \T1/ptm/m/it/10 mem_cell_list\T1/ptm/m/n/10 , Overfull \hbox (62.17444pt too wide) in paragraph at lines 5579--5579 \T1/ptm/m/it/10 n_processes\T1/ptm/m/n/10 , Overfull \hbox (65.96419pt too wide) in paragraph at lines 5579--5579 \T1/ptm/m/it/10 safety_factor\T1/ptm/m/n/10 , Overfull \hbox (27.35486pt too wide) in paragraph at lines 5579--5579 \T1/ptm/m/it/10 out- Overfull \hbox (55.9647pt too wide) in paragraph at lines 5579--5579 \T1/ptm/m/it/10 put_fname\T1/ptm/m/n/10 , Overfull \hbox (69.83406pt too wide) in paragraph at lines 5579--5579 \T1/ptm/m/it/10 reuse_results\T1/pcr/m/n/10 ) Overfull \hbox (11.85474pt too wide) in paragraph at lines 5629--5629 []\T1/ptm/m/it/10 asic\T1/ptm/m/n/10 , Overfull \hbox (4.35486pt too wide) in paragraph at lines 5629--5629 \T1/ptm/m/it/10 in- Overfull \hbox (65.82457pt too wide) in paragraph at lines 5629--5629 \T1/ptm/m/it/10 put_fname=None\T1/ptm/m/n/10 , Overfull \hbox (9.35486pt too wide) in paragraph at lines 5629--5629 \T1/ptm/m/it/10 out- Overfull \hbox (65.82457pt too wide) in paragraph at lines 5629--5629 \T1/ptm/m/it/10 put_fname=None\T1/ptm/m/n/10 , Overfull \hbox (74.71419pt too wide) in paragraph at lines 5629--5629 \T1/ptm/m/it/10 safety_factor=1000\T1/ptm/m/n/10 , Overfull \hbox (66.56442pt too wide) in paragraph at lines 5629--5629 \T1/ptm/m/it/10 plot_prefix=None\T1/ptm/m/n/10 , Overfull \hbox (55.83444pt too wide) in paragraph at lines 5629--5629 \T1/ptm/m/it/10 plot_dir=None\T1/ptm/m/n/10 , Overfull \hbox (8.97473pt too wide) in paragraph at lines 5629--5629 \T1/ptm/m/it/10 cre- Overfull \hbox (60.63423pt too wide) in paragraph at lines 5629--5629 \T1/ptm/m/it/10 ate_plots=False\T1/ptm/m/n/10 , Overfull \hbox (64.62431pt too wide) in paragraph at lines 5629--5629 \T1/ptm/m/it/10 log_level='info'\T1/pcr/m/n/10 ) [108] Overfull \hbox (30.16438pt too wide) in paragraph at lines 5731--5731 []\T1/ptm/m/it/10 list_to_check\T1/ptm/m/n/10 , Overfull \hbox (32.12476pt too wide) in paragraph at lines 5737--5737 []\T1/ptm/m/it/10 file_name\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 5743--5743 []\T1/ptm/m/it/10 asic\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Underfull \hbox (badness 10000) in paragraph at lines 5743--5743 \T1/ptm/m/it/10 put_file\T1/ptm/m/n/10 , Overfull \hbox (5.85419pt too wide) in paragraph at lines 5743--5743 \T1/ptm/m/it/10 pixel_v_list\T1/ptm/m/n/10 , Overfull \hbox (6.41425pt too wide) in paragraph at lines 5743--5743 \T1/ptm/m/it/10 pixel_u_list\T1/ptm/m/n/10 , Overfull \hbox (15.29413pt too wide) in paragraph at lines 5743--5743 \T1/ptm/m/it/10 mem_cell_list\T1/ptm/m/n/10 , Overfull \hbox (15.69415pt too wide) in paragraph at lines 5743--5743 \T1/ptm/m/it/10 safety_factor\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 5749--5749 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , Overfull \hbox (23.85419pt too wide) in paragraph at lines 5755--5755 []\T1/ptm/m/it/10 pixel_v_list\T1/ptm/m/n/10 , Overfull \hbox (24.41425pt too wide) in paragraph at lines 5755--5755 \T1/ptm/m/it/10 pixel_u_list\T1/ptm/m/n/10 , Overfull \hbox (33.29413pt too wide) in paragraph at lines 5755--5755 \T1/ptm/m/it/10 mem_cell_list\T1/ptm/m/n/10 , Overfull \hbox (35.32454pt too wide) in paragraph at lines 5755--5755 \T1/ptm/m/it/10 n_gain_stages\T1/ptm/m/n/10 , Overfull \hbox (22.74435pt too wide) in paragraph at lines 5755--5755 \T1/ptm/m/it/10 n_intervals\T1/ptm/m/n/10 , Overfull \hbox (71.82416pt too wide) in paragraph at lines 5755--5755 \T1/ptm/m/it/10 n_diff_changes_stored\T1/pcr/m/n/10 ) Overfull \hbox (14.12476pt too wide) in paragraph at lines 5767--5767 []\T1/ptm/m/it/10 file_name\T1/pcr/m/n/10 ) [109] Overfull \hbox (7.07484pt too wide) in paragraph at lines 5811--5811 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5811--5811 \T1/ptm/m/it/10 pro- Overfull \hbox (31.70407pt too wide) in paragraph at lines 5811--5811 \T1/ptm/m/it/10 cess_results\T1/ptm/m/n/10 , Overfull 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nCells=1\T1/ptm/m/n/10 , Overfull \hbox (38.44444pt too wide) in paragraph at lines 5811--5811 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , Overfull \hbox (25.76465pt too wide) in paragraph at lines 5811--5811 \T1/ptm/m/it/10 **kwargs\T1/pcr/m/n/10 ) [110] [111] [112] Underfull \hbox (badness 10000) in paragraph at lines 6099--6101 []\T1/ptm/m/n/10 Usually the Underfull \hbox (badness 10000) in paragraph at lines 6139--6147 []\T1/ptm/m/n/10 __init__(self,FileName) Get-N-u-mIm-ages(self) def Get-Data(se lf,Index, Underfull \hbox (badness 10000) in paragraph at lines 6139--6147 \T1/ptm/m/n/10 DataType=^^Q^^P,Pos=None,Size=None): Get-Pixel(self,Index,Positi on) Get-H-eader(self,Index) Get-Static- Overfull \hbox (4.81061pt too wide) in paragraph at lines 6139--6147 \T1/ptm/m/n/10 Header(self,Index) WriteIm-age (self,Header,Data,Append=1,DataTy pe=^^Q^^P,WriteAsUnsigened=0,ByteOrder=^^Q^^P) [113] [114] [115] [116] [117] Underfull \hbox (badness 10000) in paragraph at lines 6794--6794 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 path='/stream'\T1/pt m/m/n/10 , [118] Underfull \hbox (badness 10000) in paragraph at lines 6881--6881 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6881--6881 \T1/ptm/m/it/10 read- Underfull \hbox (badness 10000) in paragraph at lines 6881--6881 \T1/ptm/m/it/10 Fun\T1/ptm/m/n/10 , \T1/ptm/m/it/10 size\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6881--6881 \T1/ptm/m/it/10 chunk-Size\T1/ptm/m/n/10 , Overfull \hbox (23.16454pt too wide) in paragraph at lines 6881--6881 \T1/ptm/m/it/10 filesRange=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6881--6881 \T1/ptm/m/it/10 *args\T1/ptm/m/n/10 , [119] [120] [121] [122] Underfull \hbox (badness 10000) in paragraph at lines 7235--7237 []\T1/ptm/m/n/10 Usually the [123] [124] [125] Underfull \hbox (badness 10000) in paragraph at lines 7703--7704 []\T1/pcr/b/n/10 will be passed to the matplotlib fill_between() function. [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] Underfull \hbox (badness 10000) in paragraph at lines 11140--11140 []\T1/ptm/m/it/10 host=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 port=None\T1/ptm/m/ n/10 , \T1/ptm/m/it/10 read-Han- Underfull \hbox (badness 10000) in paragraph at lines 11160--11160 []\T1/ptm/m/it/10 host=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 port=None\T1/ptm/m/ n/10 , \T1/ptm/m/it/10 read-Han- [143] [144] Chapter 5. [145] [146] Overfull \hbox (18.6225pt too wide) in paragraph at lines 11360--11361 []\T1/pcr/m/n/10 XFELDetAna.algorithms.correct_common_mode\T1/ptm/m/n/10 , Overfull \hbox (54.6225pt too wide) in paragraph at lines 11362--11363 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.calc_offset_and_noise\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 11363--11364 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.correct_common_mode\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 11364--11365 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.correct_offset\T1/ptm/m/n/10 , Overfull \hbox (18.6225pt too wide) in paragraph at lines 11365--11366 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.correct_relgain\T1/ptm/m/n/10 , Overfull \hbox (102.6225pt too wide) in paragraph at lines 11367--11368 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.calc_offset_and_noise\T1/ptm /m/n/10 , Overfull \hbox (90.6225pt too wide) in paragraph at lines 11368--11369 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m /n/10 , Overfull \hbox (138.6225pt too wide) in paragraph at lines 11369--11370 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.correct_common_mode_batcher\ T1/ptm/m/n/10 , Overfull \hbox (78.6225pt too wide) in paragraph at lines 11370--11371 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.simple_correction\T1/ptm/m/n /10 , Overfull \hbox (48.6225pt too wide) in paragraph at lines 11371--11372 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.split_events\T1/ptm/m/n/10 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 11372--11373 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.statistics\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 11373--11374 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.util\T1/ptm/m/n/10 , Overfull \hbox (60.6225pt too wide) in paragraph at lines 11374--11375 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.xfelgpukernels\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 11375--11376 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.split_events\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 11376--11377 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.statistics\T1/ptm/m/n/10 , Overfull \hbox (18.6225pt too wide) in paragraph at lines 11378--11379 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.xfelcalgputools\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 11393--11394 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms\T1/ptm/m/n/10 , Overfull \hbox (84.6225pt too wide) in paragraph at lines 11394--11395 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms.gather\T1/ptm/m/ n/10 , Overfull \hbox (90.6225pt too wide) in paragraph at lines 11395--11396 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms.process\T1/ptm/m /n/10 , Overfull \hbox (72.6225pt too wide) in paragraph at lines 11396--11397 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms.util\T1/ptm/m/n/ 10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 11398--11399 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.gpu.kernels\T1/ptm/m/n/10 , Overfull \hbox (90.6225pt too wide) in paragraph at lines 11399--11400 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.gpu.kernels.threshold_gain\T1/ptm/m /n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 11400--11401 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.gpu.threshold_gain\T1/ptm/m/n/10 , Overfull \hbox (18.6225pt too wide) in paragraph at lines 11401--11402 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.merge_dynrange\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 11407--11408 []\T1/pcr/m/n/10 XFELDetAna.detectors.edf_data.EdfFile\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 11408--11409 []\T1/pcr/m/n/10 XFELDetAna.detectors.edf_data.loadedf\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 11409--11410 []\T1/pcr/m/n/10 XFELDetAna.detectors.edf_data.reader\T1/ptm/m/n/10 , [147] Underfull \hbox (badness 10000) in paragraph at lines 11414--11415 []\T1/pcr/m/n/10 XFELDetAna.detectors.fastccd.readerh5\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 11416--11417 []\T1/pcr/m/n/10 XFELDetAna.detectors.generator.reader\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 11418--11419 []\T1/pcr/m/n/10 XFELDetAna.detectors.jungfrau.jf_chunk_reader\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 11419--11420 []\T1/pcr/m/n/10 XFELDetAna.detectors.jungfrau.reader\T1/ptm/m/n/10 , Overfull \hbox (6.6225pt too wide) in paragraph at lines 11420--11421 []\T1/pcr/m/n/10 XFELDetAna.detectors.jungfrau.readerPSI\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 11425--11426 []\T1/pcr/m/n/10 XFELDetAna.detectors.pnccd.frm6reader\T1/ptm/m/n/10 , [148] (./src.ind Underfull \hbox (badness 10000) in paragraph at lines 8--9 []\T1/pcr/m/n/10 _axisFuncWrapper() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 9--11 []\T1/pcr/m/n/10 _commonmodeBase3d \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule X FELDe- Overfull \hbox (26.01056pt too wide) in paragraph at lines 9--11 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Overfull \hbox (26.01056pt too wide) in paragraph at lines 11--13 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 13--15 []\T1/pcr/m/n/10 _commonmodeBase3dBitonicZ1 Underfull \hbox (badness 10000) in paragraph at lines 13--15 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Overfull \hbox (26.01056pt too wide) in paragraph at lines 13--15 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 15--16 []\T1/pcr/m/n/10 _decorateModule() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule X FELDe- Underfull \hbox (badness 5331) in paragraph at lines 16--18 []\T1/pcr/m/n/10 _fill_between_steps() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 18--20 []\T1/pcr/m/n/10 _gpuCommonMode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XF ELDe- Underfull \hbox (badness 10000) in paragraph at lines 18--20 \T1/ptm/m/it/10 tAna.algorithms.gpu.correct_common_mode\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/pcr/m/n/10 _gpuCommonMode2D() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 20--22 \T1/ptm/m/it/10 tAna.algorithms.gpu.correct_common_mode\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/pcr/m/n/10 _gpuCommonMode3D() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 22--24 \T1/ptm/m/it/10 tAna.algorithms.gpu.correct_common_mode\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 30--32 []\T1/pcr/m/n/10 add_can_expand \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 32--34 []\T1/pcr/m/n/10 add_can_expand \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 32--34 \T1/ptm/m/it/10 tAna.util.knumpy.krbMaskedArray at-tribute\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 34--35 []\T1/pcr/m/n/10 add_docstring() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFE LDe- Underfull \hbox (badness 10000) in paragraph at lines 36--37 []\T1/pcr/m/n/10 add_newdoc_ufunc() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 37--39 []\T1/pcr/m/n/10 AgipdDynamicRangeGatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 37--39 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Overfull \hbox (11.28064pt too wide) in paragraph at lines 37--39 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.gather\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 39--41 []\T1/pcr/m/n/10 AgipdDynamicRangeSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 39--41 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Overfull \hbox (15.04054pt too wide) in paragraph at lines 39--41 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 41--43 []\T1/pcr/m/n/10 AgipdMergeDynamicRange \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class i n XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 44--46 []\T1/pcr/m/n/10 algorithmDescription() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (6.0305pt too wide) in paragraph at lines 44--46 \T1/ptm/m/it/10 tAna.algorithms.histogram.HistogramCalculator Underfull \hbox (badness 10000) in paragraph at lines 46--48 []\T1/pcr/m/n/10 algorithmDescription() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 46--48 \T1/ptm/m/it/10 tAna.algorithms.split_event.PatternClassifier Underfull \hbox (badness 10000) in paragraph at lines 48--50 []\T1/pcr/m/n/10 algorithmDescription() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 48--50 \T1/ptm/m/it/10 tAna.core.mapcalculator.MapCalculator Underfull \hbox (badness 10000) in paragraph at lines 50--52 []\T1/pcr/m/n/10 algorithmSpecificSettings() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XF ELDe- Underfull \hbox (badness 10000) in paragraph at lines 50--52 \T1/ptm/m/it/10 tAna.core.mapcalculator.MapCalculator Underfull \hbox (badness 10000) in paragraph at lines 54--55 []\T1/pcr/m/n/10 ALLOW_THREADS() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFE LDe- Underfull \hbox (badness 10000) in paragraph at lines 63--64 []\T1/pcr/m/n/10 apply_along_axis() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- [149] Underfull \hbox (badness 10000) in paragraph at lines 64--65 []\T1/pcr/m/n/10 apply_over_axes() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule X FELDe- Underfull \hbox (badness 10000) in paragraph at lines 75--76 []\T1/pcr/m/n/10 argpartition() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFEL De- Underfull \hbox (badness 10000) in paragraph at lines 80--81 []\T1/pcr/m/n/10 array2string() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFEL De- Underfull \hbox (badness 10000) in paragraph at lines 81--82 []\T1/pcr/m/n/10 array_equal() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 82--83 []\T1/pcr/m/n/10 array_equiv() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 84--85 []\T1/pcr/m/n/10 array_split() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 88--89 []\T1/pcr/m/n/10 asarray_chkfinite() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 89--90 []\T1/pcr/m/n/10 ascontiguousarray() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 91--92 []\T1/pcr/m/n/10 asfortranarray() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XF ELDe- Underfull \hbox (badness 10000) in paragraph at lines 94--95 []\T1/pcr/m/n/10 AsyncHandler \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 95--96 []\T1/pcr/m/n/10 AsyncServer \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 103--105 []\T1/pcr/m/n/10 axis_scales \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 103--105 \T1/ptm/m/it/10 tAna.util.knumpy.krbMaskedArray at-tribute\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 116--118 []\T1/pcr/m/n/10 baseArrayType \T1/ptm/m/n/10 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140--142 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.ProcessDrscs Underfull \hbox (badness 10000) in paragraph at lines 142--144 []\T1/pcr/m/n/10 calc_gain_regions() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (66.14977pt too wide) in paragraph at lines 142--144 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.ProcessDrscs Underfull \hbox (badness 10000) in paragraph at lines 144--146 []\T1/pcr/m/n/10 calc_thresholds() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (66.14977pt too wide) in paragraph at lines 144--146 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.ProcessDrscs Underfull \hbox (badness 10000) in paragraph at lines 146--148 []\T1/pcr/m/n/10 calculate_mapped_asic() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe - Overfull \hbox (162.59938pt too wide) in paragraph at lines 146--148 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRang eGatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 148--150 []\T1/pcr/m/n/10 calculate_mapped_asic() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe - Overfull \hbox (139.36955pt too wide) in paragraph at lines 148--150 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRan geSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 155--157 []\T1/pcr/m/n/10 check_file_exists() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Overfull \hbox (15.04054pt too wide) in paragraph at lines 155--157 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 157--159 []\T1/pcr/m/n/10 check_file_exists() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 157--159 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.util\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 159--161 []\T1/pcr/m/n/10 check_file_number() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 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165--167 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRan geSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 167--169 []\T1/pcr/m/n/10 check_lists_continous() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe - Overfull \hbox (66.14977pt too wide) in paragraph at lines 167--169 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.ProcessDrscs Underfull \hbox (badness 10000) in paragraph at lines 169--171 []\T1/pcr/m/n/10 check_output_file_exist() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFEL De- Overfull \hbox (162.59938pt too wide) in paragraph at lines 169--171 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRang eGatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 171--173 []\T1/pcr/m/n/10 check_output_file_exist() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFEL De- Overfull \hbox (139.36955pt too wide) in paragraph at lines 171--173 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRan geSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 175--177 []\T1/pcr/m/n/10 classify() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 175--177 \T1/ptm/m/it/10 tAna.algorithms.split_event.PatternClassifier Underfull \hbox (badness 10000) in paragraph at lines 181--183 []\T1/pcr/m/n/10 collect_incoming_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe - Underfull \hbox (badness 10000) in paragraph at lines 183--184 []\T1/pcr/m/n/10 column_stack() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFEL De- Underfull \hbox (badness 10000) in paragraph at lines 184--185 []\T1/pcr/m/n/10 common_type() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 185--187 []\T1/pcr/m/n/10 commonmode3d \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe - Overfull \hbox (26.01056pt too wide) in paragraph at lines 185--187 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 187--189 []\T1/pcr/m/n/10 commonmode3dBitonic \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Overfull \hbox (26.01056pt too wide) in paragraph at lines 187--189 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Underfull \hbox (badness 5331) in paragraph at lines 189--191 []\T1/pcr/m/n/10 commonmode3dBitonicZ1 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le XFELDe- Overfull \hbox (26.01056pt too wide) in paragraph at lines 189--191 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Underfull \hbox (badness 5331) in paragraph at lines 191--193 []\T1/pcr/m/n/10 commonmode3dNetwork() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le XFELDe- Overfull \hbox (61.64029pt too wide) in paragraph at lines 191--193 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode_batcher\T1/ptm/ m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 193--195 []\T1/pcr/m/n/10 CommonModeCorrection \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 193--195 \T1/ptm/m/it/10 tAna.algorithms.correct_common_mode\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 195--197 []\T1/pcr/m/n/10 compare_chararrays() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ul e XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 198--199 []\T1/pcr/m/n/10 ComplexWarning() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XF ELDe- Underfull \hbox (badness 10000) in paragraph at lines 200--201 []\T1/pcr/m/n/10 concatenate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 203--205 []\T1/pcr/m/n/10 constantDescription() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 203--205 \T1/ptm/m/it/10 tAna.core.mapcalculator.MapCalculator [151] Underfull \hbox (badness 10000) in paragraph at lines 211--213 []\T1/pcr/m/n/10 correct() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (76.15031pt too wide) in paragraph at lines 211--213 \T1/ptm/m/it/10 tAna.algorithms.correct_common_mode.CommonModeCorrection Underfull \hbox (badness 10000) in paragraph at lines 213--215 []\T1/pcr/m/n/10 correct() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 213--215 \T1/ptm/m/it/10 tAna.algorithms.unitary.UnitaryCalculator Underfull \hbox (badness 10000) in paragraph at lines 218--220 []\T1/pcr/m/n/10 count_n_files() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFE LDe- Underfull \hbox (badness 10000) in paragraph at lines 220--221 []\T1/pcr/m/n/10 count_nonzero() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFE LDe- Underfull \hbox (badness 10000) in paragraph at lines 227--229 []\T1/pcr/m/n/10 current_list_to_ndarray() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFEL De- Overfull \hbox (76.21066pt too wide) in paragraph 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logical_not() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 710--711 []\T1/pcr/m/n/10 logical_xor() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 720--721 []\T1/pcr/m/n/10 make_colormap() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFE LDe- Underfull \hbox (badness 10000) in paragraph at lines 721--723 []\T1/pcr/m/n/10 makeReport() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 721--723 \T1/ptm/m/it/10 tAna.core.mapcalculator.MapCalculator Underfull \hbox (badness 10000) in paragraph at lines 723--724 []\T1/pcr/m/n/10 MapCalculator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Underfull \hbox (badness 7963) in paragraph at lines 724--726 []\T1/pcr/m/n/10 MASK \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.algorithms.se lection.DataSelector Underfull \hbox (badness 10000) in paragraph at lines 726--727 []\T1/pcr/m/n/10 mask_indices() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFEL De- Underfull \hbox (badness 10000) in paragraph at lines 735--736 []\T1/pcr/m/n/10 maximum_sctype() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XF ELDe- Underfull \hbox (badness 10000) in paragraph at lines 736--737 []\T1/pcr/m/n/10 MAY_SHARE_BOUNDS() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 737--738 []\T1/pcr/m/n/10 MAY_SHARE_EXACT() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule X FELDe- Underfull \hbox (badness 10000) in paragraph at lines 738--739 []\T1/pcr/m/n/10 may_share_memory() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 741--743 []\T1/pcr/m/n/10 median3d \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Overfull \hbox (26.01056pt too wide) in paragraph at lines 741--743 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph 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Underfull \hbox (badness 10000) in paragraph at lines 864--866 []\T1/pcr/m/n/10 process() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (76.21066pt too wide) in paragraph at lines 864--866 \T1/ptm/m/it/10 tAna.detectors.agipd.merge_dynrange.AgipdMergeDynamicRange Underfull \hbox (badness 10000) in paragraph at lines 866--868 []\T1/pcr/m/n/10 process_data_point() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (66.14977pt too wide) in paragraph at lines 866--868 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.ProcessDrscs Underfull \hbox (badness 10000) in paragraph at lines 868--870 []\T1/pcr/m/n/10 ProcessDrscs \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Overfull \hbox (15.04054pt too wide) in paragraph at lines 868--870 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 872--873 []\T1/pcr/m/n/10 profilable() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe - 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tAna.detectors.agipd.dyrange_algorithms.process.ParallelProcess Underfull \hbox (badness 10000) in paragraph at lines 902--904 []\T1/pcr/m/n/10 readChunks() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 902--904 \T1/ptm/m/it/10 tAna.core.reader.ChunkReader method\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 904--906 []\T1/pcr/m/n/10 readChunks() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (39.88052pt too wide) in paragraph at lines 904--906 \T1/ptm/m/it/10 tAna.detectors.jungfrau.jf_chunk_reader.JFChunkReader Underfull \hbox (badness 10000) in paragraph at lines 906--908 []\T1/pcr/m/n/10 readData() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 908--909 []\T1/pcr/m/n/10 readData() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 909--911 []\T1/pcr/m/n/10 readData() \T1/ptm/m/n/10 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1151--1153 []\T1/pcr/m/n/10 write() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.util.p2pIn terface.AsyncServer Underfull \hbox (badness 10000) in paragraph at lines 1155--1157 []\T1/pcr/m/n/10 write_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (162.59938pt too wide) in paragraph at lines 1155--1157 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRang eGatherSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 1157--1159 []\T1/pcr/m/n/10 write_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (139.36955pt too wide) in paragraph at lines 1157--1159 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRan geSingleAsic Underfull \hbox (badness 10000) in paragraph at lines 1159--1161 []\T1/pcr/m/n/10 write_data() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (74.74982pt too wide) in paragraph at lines 1159--1161 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.ParallelProcess 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XFELDetAna.detectors.jungfrau.jf_chunk_reader Underfull \hbox (badness 10000) in paragraph at lines 1246--1247 []\T1/pcr/m/n/10 XFELDetAna.detectors.jungfrau.reader Overfull \hbox (4.1225pt too wide) in paragraph at lines 1247--1248 []\T1/pcr/m/n/10 XFELDetAna.detectors.jungfrau.readerPSI Underfull \hbox (badness 10000) in paragraph at lines 1252--1253 []\T1/pcr/m/n/10 XFELDetAna.detectors.pnccd.frm6reader Underfull \hbox (badness 10000) in paragraph at lines 1255--1256 []\T1/pcr/m/n/10 XFELDetAna.plotting.histogram \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mod-ule\T1/ptm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 1256--1257 []\T1/pcr/m/n/10 XFELDetAna.plotting.simpleplot \T1/ptm/m/n/10 (\T1/ptm/m/it/10 mod-ule\T1/ptm/m/n/10 ), [164]) (./src.aux) Package rerunfilecheck Warning: File `src.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on src.pdf (168 pages, 2476074 bytes). Transcript written on src.log. [rtd-command-info] start-time: 2019-06-25T07:23:51.484000Z, end-time: 2019-06-25T07:23:51.538000Z, duration: 0, exit-code: 0 mv -f /user_builds/pydetlib/checkouts/latest/doc/_build/latex/src.pdf /user_builds/pydetlib/artifacts/latest/sphinx_pdf/pydetlib.pdf [rtd-command-info] start-time: 2019-06-25T07:23:53.543000Z, end-time: 2019-06-25T07:24:44.454000Z, duration: 50, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.8.5 mkdir: cannot create directory ‘_notebooks’: File exists [NbConvertApp] Converting notebook ../examples/gainMapStability.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in gainMapStability_files/ [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Writing 48113 bytes to ./gainMapStability.rst [NbConvertApp] Converting notebook ../examples/DataGeneratorExample.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in DataGeneratorExample_files/ [NbConvertApp] Making directory ./DataGeneratorExample_files [NbConvertApp] Writing 1984559 bytes to ./DataGeneratorExample.rst [NbConvertApp] Converting notebook ../examples/calculatorCreation.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Writing 15602 bytes to ./calculatorCreation.rst [NbConvertApp] Converting notebook ../examples/PlotExamples.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in PlotExamples_files/ [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Writing 23677 bytes to ./PlotExamples.rst Creating file ./api/XFELDetAna.rst. Creating file ./api/XFELDetAna.algorithms.rst. Creating file ./api/XFELDetAna.algorithms.cython.rst. Creating file ./api/XFELDetAna.algorithms.gpu.rst. Creating file ./api/XFELDetAna.algorithms.gpu.kernels.rst. Creating file ./api/XFELDetAna.algorithms.tests.rst. Creating file ./api/XFELDetAna.core.rst. Creating file ./api/XFELDetAna.detectors.rst. Creating file ./api/XFELDetAna.detectors.agipd.rst. Creating file ./api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.kernels.rst. Creating file ./api/XFELDetAna.detectors.agipd.tests.rst. Creating file ./api/XFELDetAna.detectors.dssc.rst. Creating file ./api/XFELDetAna.detectors.edf_data.rst. Creating file ./api/XFELDetAna.detectors.epix.rst. Creating file ./api/XFELDetAna.detectors.fastccd.rst. Creating file ./api/XFELDetAna.detectors.generator.rst. Creating file ./api/XFELDetAna.detectors.jungfrau.rst. Creating file ./api/XFELDetAna.detectors.lpd.rst. Creating file ./api/XFELDetAna.detectors.pnccd.rst. Creating file ./api/XFELDetAna.plotting.rst. Creating file ./api/XFELDetAna.util.rst. Creating file ./api/modules.rst. loading translations [en]... done making output directory... loading pickled environment... done loading intersphinx inventory from http://docs.scipy.org/doc/scipy/reference/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/scipy/reference/objects.inv -> https://docs.scipy.org/doc/scipy/reference/objects.inv loading intersphinx inventory from http://docs.scipy.org/doc/numpy/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/numpy/objects.inv -> https://docs.scipy.org/doc/numpy/objects.inv loading intersphinx inventory from http://matplotlib.sourceforge.net/objects.inv... intersphinx inventory has moved: http://matplotlib.sourceforge.net/objects.inv -> https://matplotlib.org/objects.inv loading intersphinx inventory from http://docs.python.org/2.7/objects.inv... intersphinx inventory has moved: http://docs.python.org/2.7/objects.inv -> https://docs.python.org/2.7/objects.inv building [mo]: targets for 0 po files that are out of date building [epub]: targets for 30 source files that are out of date updating environment: [] 0 added, 28 changed, 3 removed reading sources... 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WARNING: autodoc: failed to import module 'xfelpycaltools' from module 'XFELDetAna'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst:16: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst:45: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:7: WARNING: toctree contains reference to nonexisting document 'api/XFELDetAna.algorithms.cython' WARNING: autodoc: failed to import module 'characterize_cti' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'characterize_noise' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'characterize_relgain' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_cti' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_offset' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_relgain' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correction' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator:38: WARNING: Unknown interpreted text role "method". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator.get:26: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: autodoc: failed to import module 'statistics' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:88: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/gpu/correct_common_mode.py:docstring of XFELDetAna.algorithms.gpu.correct_common_mode._gpuCommonMode:11: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:12: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:56: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst:49: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst WARNING: autodoc: failed to import module 'test_characterize_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_characterize_noise' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_rel_gain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_characterize_split_events' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_common_mode' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_correct_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_relgain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_statistics' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_unitary' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'testing_base' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:69: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/core/reader.py:docstring of XFELDetAna.core.reader.ChunkReader.readChunks:8: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:34: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst:20: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst WARNING: autodoc: failed to import module 'characterize_dynrange' from module 'XFELDetAna.detectors.agipd'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'threshold_gain' from module 'XFELDetAna.detectors.agipd'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:38: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:15: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:29: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:15: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:22: WARNING: Block quote ends without a blank line; 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