Read the Docs build information Build id: 11228 Project: pydetlib Version: latest Commit: 54281d68f0f1eba96cedcc7218cafa00c86c5c8f Date: 2019-07-09T03:55:25.039081Z State: finished Success: True [rtd-command-info] start-time: 2019-07-09T08:56:02.588000Z, end-time: 2019-07-09T08:56:17.218000Z, duration: 14, exit-code: 0 python3 -mvirtualenv --no-site-packages --no-download /user_builds/pydetlib/envs/latest Using base prefix '/usr' New python executable in /user_builds/pydetlib/envs/latest/bin/python3 Also creating executable in /user_builds/pydetlib/envs/latest/bin/python Installing setuptools, pip, wheel...done. [rtd-command-info] start-time: 2019-07-09T08:56:17.282000Z, end-time: 2019-07-09T08:57:41.419000Z, duration: 84, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/pip install --use-wheel -U --cache-dir /user_builds/pydetlib/.cache/pip sphinx==1.3.5 Pygments==2.1.3 setuptools==20.1.1 docutils==0.12 mkdocs==0.15.0 mock==1.0.1 pillow==2.6.1 git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext sphinx-rtd-theme==0.1.9 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.5.4 recommonmark==0.1.1 Collecting sphinx==1.3.5 Using cached https://files.pythonhosted.org/packages/ff/91/45883bc962bda1be7e78039b41cc15e1eb3327ec75679eedd067b5d07bd5/Sphinx-1.3.5-py2.py3-none-any.whl Collecting Pygments==2.1.3 Using cached https://files.pythonhosted.org/packages/9e/d0/d692085518c6a2dc875fe421c866fb6a08e0d9796ca507803c1e545fa116/Pygments-2.1.3-py2.py3-none-any.whl Collecting setuptools==20.1.1 Using cached 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setuptools 28.8.0 Uninstalling setuptools-28.8.0: Successfully uninstalled setuptools-28.8.0 Running setup.py install for readthedocs-sphinx-ext: started Running setup.py install for readthedocs-sphinx-ext: finished with status 'done' Successfully installed Jinja2-2.10.1 Markdown-3.0.1 MarkupSafe-1.1.1 PyYAML-5.1.1 Pygments-2.1.3 alabaster-0.7.12 babel-2.7.0 backports-abc-0.5 certifi-2019.6.16 chardet-3.0.4 click-7.0 commonmark-0.5.4 docutils-0.12 idna-2.8 livereload-2.6.1 mkdocs-0.15.0 mkdocs-bootstrap-1.0.1 mkdocs-bootswatch-1.0 mock-1.0.1 nilsimsa-0.3.8 pillow-2.6.1 pytz-2019.1 readthedocs-sphinx-ext-0.5.4 recommonmark-0.1.1 requests-2.21.0 setuptools-20.1.1 six-1.12.0 snowballstemmer-1.9.0 sphinx-1.3.5 sphinx-rtd-theme-0.1.9 tornado-5.1.1 urllib3-1.24.3 You are using pip version 9.0.1, however version 19.1.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2019-07-09T08:57:41.486000Z, end-time: 2019-07-09T09:03:10.921000Z, duration: 329, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/pip install --exists-action=w --cache-dir /user_builds/pydetlib/.cache/pip -rlib/docs/requirements.txt Collecting sphinx>=1.4.5 (from -r lib/docs/requirements.txt (line 1)) Using cached https://files.pythonhosted.org/packages/7d/66/a4af242b4348b729b9d46ce5db23943ce9bca7da9bbe2ece60dc27f26420/Sphinx-1.8.5-py2.py3-none-any.whl Collecting ipython (from -r lib/docs/requirements.txt (line 2)) Using cached https://files.pythonhosted.org/packages/f7/62/2fef7db3a7b75e8099c3d9db2630ae5ba0b9eefefd91f7497862393d90e8/ipython-6.5.0-py3-none-any.whl Collecting ipyparallel (from -r lib/docs/requirements.txt (line 3)) Using cached https://files.pythonhosted.org/packages/3f/82/aaa7a357845a98d4028f27c799f0d3bb2fe55fc1247c73dc712b4ae2344c/ipyparallel-6.2.4-py2.py3-none-any.whl Collecting jupyter (from -r lib/docs/requirements.txt (line 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(from notebook->jupyter->-r lib/docs/requirements.txt (line 4)) Downloading https://files.pythonhosted.org/packages/b3/23/41a5a24b502d35a4ad50a5bb7202a5e1d9a0364d0c12f56db3dbf7aca76d/prometheus_client-0.7.1.tar.gz Collecting jsonschema!=2.5.0,>=2.4 (from nbformat>=4.2.0->ipywidgets->jupyter->-r lib/docs/requirements.txt (line 4)) Using cached https://files.pythonhosted.org/packages/aa/69/df679dfbdd051568b53c38ec8152a3ab6bc533434fc7ed11ab034bf5e82f/jsonschema-3.0.1-py2.py3-none-any.whl Collecting webencodings (from bleach->nbconvert->jupyter->-r lib/docs/requirements.txt (line 4)) Using cached https://files.pythonhosted.org/packages/f4/24/2a3e3df732393fed8b3ebf2ec078f05546de641fe1b667ee316ec1dcf3b7/webencodings-0.5.1-py2.py3-none-any.whl Collecting attrs>=17.4.0 (from jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets->jupyter->-r lib/docs/requirements.txt (line 4)) Using cached 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Running setup.py bdist_wheel for pyzmq: finished with status 'done' Stored in directory: /user_builds/pydetlib/.cache/pip/wheels/9a/11/e7/4fd3c58df842b91a01e4057db88ec8342205e2702b1af4261e Running setup.py bdist_wheel for prometheus-client: started Running setup.py bdist_wheel for prometheus-client: finished with status 'done' Stored in directory: /user_builds/pydetlib/.cache/pip/wheels/1c/54/34/fd47cd9b308826cc4292b54449c1899a30251ef3b506bc91ea Running setup.py bdist_wheel for pyrsistent: started Running setup.py bdist_wheel for pyrsistent: finished with status 'done' Stored in directory: /user_builds/pydetlib/.cache/pip/wheels/8a/ec/e2/3b9045d997adb0376026267ebbb641bed0f9126eb2bc615330 Successfully built dill pyzmq prometheus-client pyrsistent Installing collected packages: imagesize, sphinxcontrib-websupport, pyparsing, packaging, typing, sphinx, parso, jedi, decorator, pickleshare, wcwidth, prompt-toolkit, ipython-genutils, traitlets, simplegeneric, ptyprocess, pexpect, backcall, ipython, python-dateutil, jupyter-core, pyzmq, jupyter-client, ipykernel, ipyparallel, qtconsole, attrs, pyrsistent, jsonschema, nbformat, terminado, pandocfilters, mistune, webencodings, bleach, defusedxml, entrypoints, testpath, nbconvert, Send2Trash, prometheus-client, notebook, widgetsnbextension, ipywidgets, jupyter-console, jupyter, cycler, numpy, kiwisolver, matplotlib, pandas, scipy, seaborn, brewer2mpl, dill, pockets, sphinxcontrib-napoleon, pypandoc Found existing installation: Sphinx 1.3.5 Uninstalling Sphinx-1.3.5: Successfully uninstalled Sphinx-1.3.5 Successfully installed Send2Trash-1.5.0 attrs-19.1.0 backcall-0.1.0 bleach-3.1.0 brewer2mpl-1.4.1 cycler-0.10.0 decorator-4.4.0 defusedxml-0.5.0 dill-0.3.0 entrypoints-0.3 imagesize-1.1.0 ipykernel-5.1.1 ipyparallel-6.2.4 ipython-6.5.0 ipython-genutils-0.2.0 ipywidgets-7.5.0 jedi-0.14.0 jsonschema-3.0.1 jupyter-1.0.0 jupyter-client-5.2.4 jupyter-console-5.2.0 jupyter-core-4.5.0 kiwisolver-1.1.0 matplotlib-2.2.4 mistune-0.8.4 nbconvert-5.4.1 nbformat-4.4.0 notebook-5.7.8 numpy-1.16.4 packaging-19.0 pandas-0.18.0 pandocfilters-1.4.2 parso-0.5.0 pexpect-4.7.0 pickleshare-0.7.5 pockets-0.7.2 prometheus-client-0.7.1 prompt-toolkit-1.0.16 ptyprocess-0.6.0 pypandoc-1.4 pyparsing-2.4.0 pyrsistent-0.15.3 python-dateutil-2.8.0 pyzmq-18.0.2 qtconsole-4.5.1 scipy-1.2.2 seaborn-0.9.0 simplegeneric-0.8.1 sphinx-1.8.5 sphinxcontrib-napoleon-0.7 sphinxcontrib-websupport-1.1.2 terminado-0.8.2 testpath-0.4.2 traitlets-4.3.2 typing-3.7.4 wcwidth-0.1.7 webencodings-0.5.1 widgetsnbextension-3.5.0 You are using pip version 9.0.1, however version 19.1.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2019-07-09T09:03:11.417000Z, end-time: 2019-07-09T09:03:11.450000Z, duration: 0, exit-code: 0 cat conf.py # -*- coding: utf-8 -*- # # src documentation build configuration file, created by # sphinx-quickstart on Tue Sep 30 09:45:40 2014. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. import subprocess import sys import os sys.path.append(os.path.abspath("../src/")) p = subprocess.Popen(["./makeAllDocs.sh"]) p.communicate() from unittest.mock import MagicMock class Mock(MagicMock): @classmethod def __getattr__(cls, name): return Mock() MOCK_MODULES = ['pycuda', 'pycuda.driver', 'pycuda.compiler', 'pycuda.autoinit', 'h5py', 'brewer2mpl', 'matplotlib', 'matplotlib.pyplot', 'matplotlib.colors', 'matplotlib.axes', 'scipy', 'scipy.stats', 'matplotlib.patches', 'scipy.ndimage', 'scipy.ndimage.filters', 'iminuit', 'mpl_toolkits', 'mpl_toolkits.mplot3d', 'mpl_toolkits.axes_grid1', 'mpl_toolkits.axes_grid1.inset_locator', 'pandoc', 'pypandoc'] sys.modules.update((mod_name, Mock()) for mod_name in MOCK_MODULES) # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. #sys.path.insert(0, os.path.abspath('.')) # -- General configuration ------------------------------------------------ # If your documentation needs a minimal Sphinx version, state it here. #needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.autodoc', 'sphinx.ext.viewcode', 'sphinxcontrib.napoleon', 'sphinx.ext.mathjax', 'sphinx.ext.intersphinx', 'sphinx.ext.autosectionlabel', ] # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix of source filenames. source_suffix = '.rst' # The encoding of source files. #source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'XFEL Detector Tools' copyright = u'2014, European X-ray Free Electron Laser Facility GmbH' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. version = '' # The full version, including alpha/beta/rc tags. release = '' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. #language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: #today = '' # Else, today_fmt is used as the format for a strftime call. #today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. exclude_patterns = ['_build'] # The reST default role (used for this markup: `text`) to use for all # documents. #default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. #add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). #add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. #show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. #modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. #keep_warnings = False # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. #html_theme_options = {} # Add any paths that contain custom themes here, relative to this directory. #html_theme_path = [] # The name for this set of Sphinx documents. If None, it defaults to # " v documentation". #html_title = None # A shorter title for the navigation bar. Default is the same as html_title. #html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. #html_logo = None # The name of an image file (within the static path) to use as favicon of the # docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. #html_favicon = None # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the documentation. #html_extra_path = [] # If not '', a 'Last updated on:' timestamp is inserted at every page bottom, # using the given strftime format. #html_last_updated_fmt = '%b %d, %Y' # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. #html_use_smartypants = True # Custom sidebar templates, maps document names to template names. #html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. #html_additional_pages = {} # If false, no module index is generated. #html_domain_indices = True # If false, no index is generated. #html_use_index = True # If true, the index is split into individual pages for each letter. #html_split_index = False # If true, links to the reST sources are added to the pages. #html_show_sourcelink = True # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. #html_show_sphinx = True # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. #html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. #html_use_opensearch = '' # This is the file name suffix for HTML files (e.g. ".xhtml"). #html_file_suffix = None # Output file base name for HTML help builder. htmlhelp_basename = 'srcdoc' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). #'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). #'pointsize': '10pt', # Additional stuff for the LaTeX preamble. #'preamble': '', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ ('index', 'src.tex', u'XFEL Detector Tools', u'Steffen Hauf', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. #latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. #latex_use_parts = False # If true, show page references after internal links. #latex_show_pagerefs = False # If true, show URL addresses after external links. #latex_show_urls = False # Documents to append as an appendix to all manuals. #latex_appendices = [] # If false, no module index is generated. #latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ ('index', 'src', u'XFEL Detector Tools', [u'Author'], 1) ] # If true, show URL addresses after external links. #man_show_urls = False # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ ('index', 'src', u'XFEL Detector Tools', u'Author', 'src', 'One line description of project.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. #texinfo_appendices = [] # If false, no module index is generated. #texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. #texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. #texinfo_no_detailmenu = False # -- Options for Epub output ---------------------------------------------- # Bibliographic Dublin Core info. epub_title = u'XFEL Detector Tools' epub_author = u'Steffen Hauf' epub_publisher = u'European X-ray Free Electron Laser GmbH' epub_copyright = u'2014, Steffen Hauf' # The basename for the epub file. It defaults to the project name. #epub_basename = u'src' # The HTML theme for the epub output. Since the default themes are not optimized # for small screen space, using the same theme for HTML and epub output is # usually not wise. This defaults to 'epub', a theme designed to save visual # space. #epub_theme = 'epub' # The language of the text. It defaults to the language option # or en if the language is not set. #epub_language = '' # The scheme of the identifier. Typical schemes are ISBN or URL. #epub_scheme = '' # The unique identifier of the text. This can be a ISBN number # or the project homepage. #epub_identifier = '' # A unique identification for the text. #epub_uid = '' # A tuple containing the cover image and cover page html template filenames. #epub_cover = () # A sequence of (type, uri, title) tuples for the guide element of content.opf. #epub_guide = () # HTML files that should be inserted before the pages created by sphinx. # The format is a list of tuples containing the path and title. #epub_pre_files = [] # HTML files shat should be inserted after the pages created by sphinx. # The format is a list of tuples containing the path and title. #epub_post_files = [] # A list of files that should not be packed into the epub file. epub_exclude_files = ['search.html'] # The depth of the table of contents in toc.ncx. #epub_tocdepth = 3 # Allow duplicate toc entries. #epub_tocdup = True # Choose between 'default' and 'includehidden'. #epub_tocscope = 'default' # Fix unsupported image types using the PIL. #epub_fix_images = False # Scale large images. #epub_max_image_width = 0 # How to display URL addresses: 'footnote', 'no', or 'inline'. #epub_show_urls = 'inline' # If false, no index is generated. #epub_use_index = True autoclass_content = 'both' napoleon_google_docstring = True napoleon_numpy_docstring = True napoleon_include_private_with_doc = True napoleon_include_special_with_doc = False napoleon_use_admonition_for_examples = False napoleon_use_admonition_for_notes = False napoleon_use_admonition_for_references = False napoleon_use_ivar = False napoleon_use_param = True napoleon_use_rtype = True intersphinx_mapping = {'python': ('http://docs.python.org/2.7', None), 'numpy': ('http://docs.scipy.org/doc/numpy/', None), 'scipy': ('http://docs.scipy.org/doc/scipy/reference/', None), 'matplotlib': ('http://matplotlib.sourceforge.net/', None)} ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix else: SUFFIX = source_suffix[0] else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') html_static_path.append('/rtd_root/readthedocs/templates/sphinx/_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = False if 'html_theme' in globals(): if html_theme in ['default']: # Allow people to bail with a hack of having an html_style if not 'html_style' in globals(): import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True else: import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.org/websupport' if 'http' not in settings.MEDIA_URL: websupport2_static_url = '/static/' else: websupport2_static_url = '/media//static' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'MEDIA_URL': "/media/", 'PRODUCTION_DOMAIN': "exflrtd.desy.de", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ], 'downloads': [ ("pdf", "//exflrtd.desy.de/projects/pydetlib/downloads/pdf/latest/"), ("htmlzip", "//exflrtd.desy.de/projects/pydetlib/downloads/htmlzip/latest/"), ("epub", "//exflrtd.desy.de/projects/pydetlib/downloads/epub/latest/"), ], 'subprojects': [ ], 'slug': 'pydetlib', 'name': u'PyDetLib', 'rtd_language': u'en', 'canonical_url': 'http://exflrtd.desy.de/docs/pydetlib/en/latest/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/doc/', 'api_host': 'https://readthedocs.org', 'github_user': 'None', 'github_repo': 'None', 'github_version': 'master', 'display_github': False, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-1', 'commit': '54281d68', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): extensions.append("readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] [rtd-command-info] start-time: 2019-07-09T09:03:11.524000Z, end-time: 2019-07-09T09:04:23.919000Z, duration: 72, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/sphinx-build -T -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 [NbConvertApp] Converting notebook ../examples/gainMapStability.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in gainMapStability_files/ [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Writing 48113 bytes to ./gainMapStability.rst [NbConvertApp] Converting notebook ../examples/DataGeneratorExample.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in DataGeneratorExample_files/ [NbConvertApp] Making directory ./DataGeneratorExample_files [NbConvertApp] Writing 1984559 bytes to ./DataGeneratorExample.rst [NbConvertApp] Converting notebook ../examples/calculatorCreation.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Writing 15602 bytes to ./calculatorCreation.rst [NbConvertApp] Converting notebook ../examples/PlotExamples.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in PlotExamples_files/ [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Writing 26595 bytes to ./PlotExamples.rst rm: cannot remove ‘api/*’: No such file or directory Creating file ./api/XFELDetAna.rst. Creating file ./api/XFELDetAna.algorithms.rst. Creating file ./api/XFELDetAna.algorithms.cython.rst. Creating file ./api/XFELDetAna.algorithms.gpu.rst. Creating file ./api/XFELDetAna.algorithms.gpu.kernels.rst. Creating file ./api/XFELDetAna.algorithms.tests.rst. Creating file ./api/XFELDetAna.core.rst. Creating file ./api/XFELDetAna.detectors.rst. Creating file ./api/XFELDetAna.detectors.agipd.rst. Creating file ./api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.kernels.rst. Creating file ./api/XFELDetAna.detectors.agipd.tests.rst. Creating file ./api/XFELDetAna.detectors.dssc.rst. Creating file ./api/XFELDetAna.detectors.edf_data.rst. Creating file ./api/XFELDetAna.detectors.epix.rst. Creating file ./api/XFELDetAna.detectors.fastccd.rst. Creating file ./api/XFELDetAna.detectors.generator.rst. Creating file ./api/XFELDetAna.detectors.jungfrau.rst. Creating file ./api/XFELDetAna.detectors.lpd.rst. Creating file ./api/XFELDetAna.detectors.pnccd.rst. Creating file ./api/XFELDetAna.plotting.rst. Creating file ./api/XFELDetAna.util.rst. Creating file ./api/modules.rst. loading translations [en]... done making output directory... loading intersphinx inventory from http://matplotlib.sourceforge.net/objects.inv... intersphinx inventory has moved: http://matplotlib.sourceforge.net/objects.inv -> https://matplotlib.org/objects.inv loading intersphinx inventory from http://docs.scipy.org/doc/scipy/reference/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/scipy/reference/objects.inv -> https://docs.scipy.org/doc/scipy/reference/objects.inv loading intersphinx inventory from http://docs.scipy.org/doc/numpy/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/numpy/objects.inv -> https://docs.scipy.org/doc/numpy/objects.inv loading intersphinx inventory from http://docs.python.org/2.7/objects.inv... intersphinx inventory has moved: http://docs.python.org/2.7/objects.inv -> https://docs.python.org/2.7/objects.inv building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 30 source files that are out of date updating environment: 30 added, 0 changed, 0 removed reading sources... [ 3%] _notebooks/DataGeneratorExample reading sources... [ 6%] _notebooks/PlotExamples reading sources... [ 10%] _notebooks/calculatorCreation reading sources... [ 13%] _notebooks/gainMapStability reading sources... [ 16%] _notebooks/index reading sources... [ 20%] api/XFELDetAna Plotting not available No module named 'matplotlib.collections' reading sources... [ 23%] api/XFELDetAna.algorithms reading sources... [ 26%] api/XFELDetAna.algorithms.gpu reading sources... [ 30%] api/XFELDetAna.algorithms.gpu.kernels reading sources... [ 33%] api/XFELDetAna.algorithms.tests reading sources... [ 36%] api/XFELDetAna.core reading sources... [ 40%] api/XFELDetAna.detectors reading sources... [ 43%] api/XFELDetAna.detectors.agipd reading sources... [ 46%] api/XFELDetAna.detectors.agipd.dyrange_algorithms reading sources... [ 50%] api/XFELDetAna.detectors.agipd.gpu reading sources... [ 53%] api/XFELDetAna.detectors.agipd.gpu.kernels reading sources... [ 56%] api/XFELDetAna.detectors.agipd.tests reading sources... [ 60%] api/XFELDetAna.detectors.dssc reading sources... [ 63%] api/XFELDetAna.detectors.edf_data reading sources... [ 66%] api/XFELDetAna.detectors.epix reading sources... [ 70%] api/XFELDetAna.detectors.fastccd reading sources... [ 73%] api/XFELDetAna.detectors.generator reading sources... [ 76%] api/XFELDetAna.detectors.jungfrau reading sources... [ 80%] api/XFELDetAna.detectors.lpd reading sources... [ 83%] api/XFELDetAna.detectors.pnccd reading sources... [ 86%] api/XFELDetAna.plotting reading sources... [ 90%] api/XFELDetAna.util reading sources... [ 93%] api/modules reading sources... [ 96%] index reading sources... [100%] installation /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. RemovedInSphinx20Warning) /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:18: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:24: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:44: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:48: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:54: WARNING: Unknown interpreted text role "raw-latex". WARNING: autodoc: failed to import module 'xfelpycaltools' from module 'XFELDetAna'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:7: WARNING: toctree contains reference to nonexisting document 'api/XFELDetAna.algorithms.cython' WARNING: autodoc: failed to import module 'characterize_cti' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'characterize_noise' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'characterize_relgain' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_cti' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_offset' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_relgain' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correction' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator:38: WARNING: Unknown interpreted text role "method". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator.get:26: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: autodoc: failed to import module 'statistics' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:88: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/gpu/correct_common_mode.py:docstring of XFELDetAna.algorithms.gpu.correct_common_mode._gpuCommonMode:11: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:12: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:56: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst:49: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst WARNING: autodoc: failed to import module 'test_characterize_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_characterize_noise' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_rel_gain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_characterize_split_events' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_common_mode' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_correct_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_relgain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_statistics' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_unitary' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'testing_base' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:69: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/core/reader.py:docstring of XFELDetAna.core.reader.ChunkReader.readChunks:8: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:34: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst:20: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst WARNING: autodoc: failed to import module 'characterize_dynrange' from module 'XFELDetAna.detectors.agipd'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'threshold_gain' from module 'XFELDetAna.detectors.agipd'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:38: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:15: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:29: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of 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[100%] _notebooks/PlotExamples_files/PlotExamples_8_1.png copying static files... /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/readthedocs_ext/readthedocs.py:75: RemovedInSphinx20Warning: builder.css_files is deprecated. Please use app.add_stylesheet() instead. app.builder.css_files.insert(0, theme_css) WARNING: html_static_path entry '/user_builds/pydetlib/checkouts/latest/lib/docs/_static' does not exist WARNING: html_static_path entry '/rtd_root/readthedocs/templates/sphinx/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 140 warnings. The HTML pages are in _build/html. Copying readthedocs-dynamic-include.js_t... done Copying readthedocs-data.js_t... done Copying searchtools.js_t... done /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/readthedocs_ext/readthedocs.py:122: RemovedInSphinx20Warning: app.info() is now deprecated. Use sphinx.util.logging instead. app.info(bold('Copying %s... ' % file), nonl=True) /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/readthedocs_ext/readthedocs.py:136: RemovedInSphinx20Warning: app.info() is now deprecated. Use sphinx.util.logging instead. app.info('done') [rtd-command-info] start-time: 2019-07-09T09:04:36.056000Z, end-time: 2019-07-09T09:05:29.826000Z, duration: 53, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/sphinx-build -T -b json -d _build/doctrees-json -D language=en . _build/json Running Sphinx v1.8.5 mkdir: cannot create directory ‘_notebooks’: File exists [NbConvertApp] Converting notebook ../examples/gainMapStability.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in gainMapStability_files/ [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Writing 48113 bytes to ./gainMapStability.rst [NbConvertApp] Converting notebook ../examples/DataGeneratorExample.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in DataGeneratorExample_files/ [NbConvertApp] Making directory ./DataGeneratorExample_files [NbConvertApp] Writing 1984559 bytes to ./DataGeneratorExample.rst [NbConvertApp] Converting notebook ../examples/calculatorCreation.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Writing 15602 bytes to ./calculatorCreation.rst [NbConvertApp] Converting notebook ../examples/PlotExamples.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in PlotExamples_files/ [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Writing 26595 bytes to ./PlotExamples.rst Creating file ./api/XFELDetAna.rst. Creating file ./api/XFELDetAna.algorithms.rst. Creating file ./api/XFELDetAna.algorithms.cython.rst. Creating file ./api/XFELDetAna.algorithms.gpu.rst. Creating file ./api/XFELDetAna.algorithms.gpu.kernels.rst. Creating file ./api/XFELDetAna.algorithms.tests.rst. Creating file ./api/XFELDetAna.core.rst. Creating file ./api/XFELDetAna.detectors.rst. Creating file ./api/XFELDetAna.detectors.agipd.rst. Creating file ./api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.kernels.rst. Creating file ./api/XFELDetAna.detectors.agipd.tests.rst. Creating file ./api/XFELDetAna.detectors.dssc.rst. Creating file ./api/XFELDetAna.detectors.edf_data.rst. Creating file ./api/XFELDetAna.detectors.epix.rst. Creating file ./api/XFELDetAna.detectors.fastccd.rst. Creating file ./api/XFELDetAna.detectors.generator.rst. Creating file ./api/XFELDetAna.detectors.jungfrau.rst. Creating file ./api/XFELDetAna.detectors.lpd.rst. Creating file ./api/XFELDetAna.detectors.pnccd.rst. Creating file ./api/XFELDetAna.plotting.rst. Creating file ./api/XFELDetAna.util.rst. Creating file ./api/modules.rst. loading translations [en]... done making output directory... loading intersphinx inventory from http://docs.python.org/2.7/objects.inv... intersphinx inventory has moved: http://docs.python.org/2.7/objects.inv -> https://docs.python.org/2.7/objects.inv loading intersphinx inventory from http://matplotlib.sourceforge.net/objects.inv... intersphinx inventory has moved: http://matplotlib.sourceforge.net/objects.inv -> https://matplotlib.org/objects.inv loading intersphinx inventory from http://docs.scipy.org/doc/scipy/reference/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/scipy/reference/objects.inv -> https://docs.scipy.org/doc/scipy/reference/objects.inv loading intersphinx inventory from http://docs.scipy.org/doc/numpy/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/numpy/objects.inv -> https://docs.scipy.org/doc/numpy/objects.inv building [mo]: targets for 0 po files that are out of date building [json]: targets for 30 source files that are out of date updating environment: 30 added, 0 changed, 0 removed reading sources... [ 3%] _notebooks/DataGeneratorExample reading sources... [ 6%] _notebooks/PlotExamples reading sources... [ 10%] _notebooks/calculatorCreation reading sources... [ 13%] _notebooks/gainMapStability reading sources... [ 16%] _notebooks/index reading sources... [ 20%] api/XFELDetAna Plotting not available No module named 'matplotlib.collections' reading sources... [ 23%] api/XFELDetAna.algorithms reading sources... [ 26%] api/XFELDetAna.algorithms.gpu reading sources... [ 30%] api/XFELDetAna.algorithms.gpu.kernels reading sources... [ 33%] api/XFELDetAna.algorithms.tests reading sources... [ 36%] api/XFELDetAna.core reading sources... [ 40%] api/XFELDetAna.detectors reading sources... [ 43%] api/XFELDetAna.detectors.agipd reading sources... [ 46%] api/XFELDetAna.detectors.agipd.dyrange_algorithms reading sources... [ 50%] api/XFELDetAna.detectors.agipd.gpu reading sources... [ 53%] api/XFELDetAna.detectors.agipd.gpu.kernels reading sources... [ 56%] api/XFELDetAna.detectors.agipd.tests reading sources... [ 60%] api/XFELDetAna.detectors.dssc reading sources... [ 63%] api/XFELDetAna.detectors.edf_data reading sources... [ 66%] api/XFELDetAna.detectors.epix reading sources... [ 70%] api/XFELDetAna.detectors.fastccd reading sources... [ 73%] api/XFELDetAna.detectors.generator reading sources... [ 76%] api/XFELDetAna.detectors.jungfrau reading sources... [ 80%] api/XFELDetAna.detectors.lpd reading sources... [ 83%] api/XFELDetAna.detectors.pnccd reading sources... [ 86%] api/XFELDetAna.plotting reading sources... [ 90%] api/XFELDetAna.util reading sources... [ 93%] api/modules reading sources... [ 96%] index reading sources... [100%] installation /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. RemovedInSphinx20Warning) /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:18: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:24: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:44: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:48: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:54: WARNING: Unknown interpreted text role "raw-latex". WARNING: autodoc: failed to import module 'xfelpycaltools' from module 'XFELDetAna'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:7: WARNING: toctree contains reference to nonexisting document 'api/XFELDetAna.algorithms.cython' WARNING: autodoc: failed to import module 'characterize_cti' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'characterize_noise' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'characterize_relgain' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_cti' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_offset' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_relgain' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correction' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator:38: WARNING: Unknown interpreted text role "method". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator.get:26: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: autodoc: failed to import module 'statistics' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:88: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/gpu/correct_common_mode.py:docstring of XFELDetAna.algorithms.gpu.correct_common_mode._gpuCommonMode:11: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:12: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:56: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst:49: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst WARNING: autodoc: failed to import module 'test_characterize_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_characterize_noise' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_rel_gain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_characterize_split_events' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_common_mode' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_correct_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_relgain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_statistics' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_unitary' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'testing_base' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:69: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/core/reader.py:docstring of XFELDetAna.core.reader.ChunkReader.readChunks:8: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:34: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst:20: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst WARNING: autodoc: failed to import module 'characterize_dynrange' from module 'XFELDetAna.detectors.agipd'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'threshold_gain' from module 'XFELDetAna.detectors.agipd'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:38: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:15: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:29: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected 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WARNING: autodoc: failed to import module 'cluster' from module 'XFELDetAna.util'; the following exception was raised: No module named 'psutil' WARNING: __all__ should be a list of strings, not .wrapped at 0x7f258c6af620> (in module XFELDetAna.util.knumpy) -- ignoring __all__ /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:34: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst /user_builds/pydetlib/checkouts/latest/lib/docs/index.rst:7: WARNING: Title underline too short. Welcome to XFEL Detector Tools' documentation! =============================== looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 3%] _notebooks/DataGeneratorExample writing output... [ 6%] _notebooks/PlotExamples writing output... [ 10%] _notebooks/calculatorCreation writing output... [ 13%] _notebooks/gainMapStability writing output... [ 16%] _notebooks/index writing output... [ 20%] api/XFELDetAna writing output... [ 23%] api/XFELDetAna.algorithms writing output... [ 26%] api/XFELDetAna.algorithms.gpu writing output... [ 30%] api/XFELDetAna.algorithms.gpu.kernels writing output... [ 33%] api/XFELDetAna.algorithms.tests writing output... [ 36%] api/XFELDetAna.core writing output... [ 40%] api/XFELDetAna.detectors writing output... [ 43%] api/XFELDetAna.detectors.agipd writing output... [ 46%] api/XFELDetAna.detectors.agipd.dyrange_algorithms writing output... 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WARNING: html_static_path entry '/user_builds/pydetlib/checkouts/latest/lib/docs/_static' does not exist WARNING: html_static_path entry '/rtd_root/readthedocs/templates/sphinx/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 140 warnings. You can now process the JSON files in _build/json. [rtd-command-info] start-time: 2019-07-09T09:05:35.986000Z, end-time: 2019-07-09T09:06:24.382000Z, duration: 48, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.8.5 mkdir: cannot create directory ‘_notebooks’: File exists [NbConvertApp] Converting notebook ../examples/gainMapStability.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in gainMapStability_files/ [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Writing 48113 bytes to ./gainMapStability.rst [NbConvertApp] Converting notebook ../examples/DataGeneratorExample.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in DataGeneratorExample_files/ [NbConvertApp] Making directory ./DataGeneratorExample_files [NbConvertApp] Writing 1984559 bytes to ./DataGeneratorExample.rst [NbConvertApp] Converting notebook ../examples/calculatorCreation.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Writing 15602 bytes to ./calculatorCreation.rst [NbConvertApp] Converting notebook ../examples/PlotExamples.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in PlotExamples_files/ [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Writing 26595 bytes to ./PlotExamples.rst Creating file ./api/XFELDetAna.rst. Creating file ./api/XFELDetAna.algorithms.rst. Creating file ./api/XFELDetAna.algorithms.cython.rst. Creating file ./api/XFELDetAna.algorithms.gpu.rst. Creating file ./api/XFELDetAna.algorithms.gpu.kernels.rst. Creating file ./api/XFELDetAna.algorithms.tests.rst. Creating file ./api/XFELDetAna.core.rst. Creating file ./api/XFELDetAna.detectors.rst. Creating file ./api/XFELDetAna.detectors.agipd.rst. Creating file ./api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.kernels.rst. Creating file ./api/XFELDetAna.detectors.agipd.tests.rst. Creating file ./api/XFELDetAna.detectors.dssc.rst. Creating file ./api/XFELDetAna.detectors.edf_data.rst. Creating file ./api/XFELDetAna.detectors.epix.rst. Creating file ./api/XFELDetAna.detectors.fastccd.rst. Creating file ./api/XFELDetAna.detectors.generator.rst. Creating file ./api/XFELDetAna.detectors.jungfrau.rst. Creating file ./api/XFELDetAna.detectors.lpd.rst. Creating file ./api/XFELDetAna.detectors.pnccd.rst. Creating file ./api/XFELDetAna.plotting.rst. Creating file ./api/XFELDetAna.util.rst. Creating file ./api/modules.rst. loading translations [en]... done making output directory... loading intersphinx inventory from http://docs.scipy.org/doc/numpy/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/numpy/objects.inv -> https://docs.scipy.org/doc/numpy/objects.inv loading intersphinx inventory from http://matplotlib.sourceforge.net/objects.inv... intersphinx inventory has moved: http://matplotlib.sourceforge.net/objects.inv -> https://matplotlib.org/objects.inv loading intersphinx inventory from http://docs.scipy.org/doc/scipy/reference/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/scipy/reference/objects.inv -> https://docs.scipy.org/doc/scipy/reference/objects.inv loading intersphinx inventory from http://docs.python.org/2.7/objects.inv... intersphinx inventory has moved: http://docs.python.org/2.7/objects.inv -> https://docs.python.org/2.7/objects.inv building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 30 added, 0 changed, 0 removed reading sources... [ 3%] _notebooks/DataGeneratorExample reading sources... [ 6%] _notebooks/PlotExamples reading sources... [ 10%] _notebooks/calculatorCreation reading sources... [ 13%] _notebooks/gainMapStability reading sources... [ 16%] _notebooks/index reading sources... [ 20%] api/XFELDetAna Plotting not available No module named 'matplotlib.collections' reading sources... [ 23%] api/XFELDetAna.algorithms reading sources... [ 26%] api/XFELDetAna.algorithms.gpu reading sources... [ 30%] api/XFELDetAna.algorithms.gpu.kernels reading sources... [ 33%] api/XFELDetAna.algorithms.tests reading sources... [ 36%] api/XFELDetAna.core reading sources... [ 40%] api/XFELDetAna.detectors reading sources... [ 43%] api/XFELDetAna.detectors.agipd reading sources... [ 46%] api/XFELDetAna.detectors.agipd.dyrange_algorithms reading sources... [ 50%] api/XFELDetAna.detectors.agipd.gpu reading sources... [ 53%] api/XFELDetAna.detectors.agipd.gpu.kernels reading sources... [ 56%] api/XFELDetAna.detectors.agipd.tests reading sources... [ 60%] api/XFELDetAna.detectors.dssc reading sources... [ 63%] api/XFELDetAna.detectors.edf_data reading sources... [ 66%] api/XFELDetAna.detectors.epix reading sources... [ 70%] api/XFELDetAna.detectors.fastccd reading sources... [ 73%] api/XFELDetAna.detectors.generator reading sources... [ 76%] api/XFELDetAna.detectors.jungfrau reading sources... [ 80%] api/XFELDetAna.detectors.lpd reading sources... [ 83%] api/XFELDetAna.detectors.pnccd reading sources... [ 86%] api/XFELDetAna.plotting reading sources... [ 90%] api/XFELDetAna.util reading sources... [ 93%] api/modules reading sources... [ 96%] index reading sources... [100%] installation /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. RemovedInSphinx20Warning) /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:18: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:24: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:44: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:48: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:54: WARNING: Unknown interpreted text role "raw-latex". WARNING: autodoc: failed to import module 'xfelpycaltools' from module 'XFELDetAna'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:7: WARNING: toctree contains reference to nonexisting document 'api/XFELDetAna.algorithms.cython' WARNING: autodoc: failed to import module 'characterize_cti' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'characterize_noise' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'characterize_relgain' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_cti' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_offset' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_relgain' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correction' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator:38: WARNING: Unknown interpreted text role "method". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator.get:26: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: autodoc: failed to import module 'statistics' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:88: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/gpu/correct_common_mode.py:docstring of XFELDetAna.algorithms.gpu.correct_common_mode._gpuCommonMode:11: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:12: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:56: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst:49: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst WARNING: autodoc: failed to import module 'test_characterize_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_characterize_noise' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_rel_gain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_characterize_split_events' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_common_mode' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_correct_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_relgain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_statistics' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_unitary' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'testing_base' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:69: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/core/reader.py:docstring of XFELDetAna.core.reader.ChunkReader.readChunks:8: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:34: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst:20: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst WARNING: autodoc: failed to import module 'characterize_dynrange' from module 'XFELDetAna.detectors.agipd'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'threshold_gain' from module 'XFELDetAna.detectors.agipd'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:38: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:15: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Block quote ends without a 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/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.GetData:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:3: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:5: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of 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WARNING: autodoc: failed to import module 'cluster' from module 'XFELDetAna.util'; the following exception was raised: No module named 'psutil' WARNING: __all__ should be a list of strings, not .wrapped at 0x7f2a37554c80> (in module XFELDetAna.util.knumpy) -- ignoring __all__ /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:34: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst /user_builds/pydetlib/checkouts/latest/lib/docs/index.rst:7: WARNING: Title underline too short. Welcome to XFEL Detector Tools' documentation! =============================== looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... installation _notebooks/index _notebooks/gainMapStability _notebooks/DataGeneratorExample _notebooks/calculatorCreation _notebooks/PlotExamples api/modules api/XFELDetAna api/XFELDetAna.algorithms api/XFELDetAna.algorithms.gpu api/XFELDetAna.algorithms.gpu.kernels api/XFELDetAna.algorithms.tests api/XFELDetAna.core api/XFELDetAna.detectors api/XFELDetAna.detectors.agipd api/XFELDetAna.detectors.agipd.dyrange_algorithms api/XFELDetAna.detectors.agipd.gpu api/XFELDetAna.detectors.agipd.gpu.kernels api/XFELDetAna.detectors.agipd.tests api/XFELDetAna.detectors.dssc api/XFELDetAna.detectors.edf_data api/XFELDetAna.detectors.epix api/XFELDetAna.detectors.fastccd api/XFELDetAna.detectors.generator api/XFELDetAna.detectors.jungfrau api/XFELDetAna.detectors.lpd api/XFELDetAna.detectors.pnccd api/XFELDetAna.plotting api/XFELDetAna.util writing... done writing additional files... copying images... 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[100%] _notebooks/gainMapStability_files/gainMapStability_12_5.png copying static files... /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/readthedocs_ext/readthedocs.py:75: RemovedInSphinx20Warning: builder.css_files is deprecated. Please use app.add_stylesheet() instead. app.builder.css_files.insert(0, theme_css) WARNING: html_static_path entry '/user_builds/pydetlib/checkouts/latest/lib/docs/_static' does not exist WARNING: html_static_path entry '/rtd_root/readthedocs/templates/sphinx/_static' does not exist done copying extra files... done dumping object inventory... done build succeeded, 140 warnings. The HTML page is in _build/localmedia. [rtd-command-info] start-time: 2019-07-09T09:06:25.765000Z, end-time: 2019-07-09T09:07:12.973000Z, duration: 47, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.8.5 mkdir: cannot create directory ‘_notebooks’: File exists [NbConvertApp] Converting notebook ../examples/gainMapStability.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in gainMapStability_files/ [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Writing 48113 bytes to ./gainMapStability.rst [NbConvertApp] Converting notebook ../examples/DataGeneratorExample.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in DataGeneratorExample_files/ [NbConvertApp] Making directory ./DataGeneratorExample_files [NbConvertApp] Writing 1984559 bytes to ./DataGeneratorExample.rst [NbConvertApp] Converting notebook ../examples/calculatorCreation.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Writing 15602 bytes to ./calculatorCreation.rst [NbConvertApp] Converting notebook ../examples/PlotExamples.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in PlotExamples_files/ [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Writing 26595 bytes to ./PlotExamples.rst Creating file ./api/XFELDetAna.rst. Creating file ./api/XFELDetAna.algorithms.rst. Creating file ./api/XFELDetAna.algorithms.cython.rst. Creating file ./api/XFELDetAna.algorithms.gpu.rst. Creating file ./api/XFELDetAna.algorithms.gpu.kernels.rst. Creating file ./api/XFELDetAna.algorithms.tests.rst. Creating file ./api/XFELDetAna.core.rst. Creating file ./api/XFELDetAna.detectors.rst. Creating file ./api/XFELDetAna.detectors.agipd.rst. Creating file ./api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.kernels.rst. Creating file ./api/XFELDetAna.detectors.agipd.tests.rst. Creating file ./api/XFELDetAna.detectors.dssc.rst. Creating file ./api/XFELDetAna.detectors.edf_data.rst. Creating file ./api/XFELDetAna.detectors.epix.rst. Creating file ./api/XFELDetAna.detectors.fastccd.rst. Creating file ./api/XFELDetAna.detectors.generator.rst. Creating file ./api/XFELDetAna.detectors.jungfrau.rst. Creating file ./api/XFELDetAna.detectors.lpd.rst. Creating file ./api/XFELDetAna.detectors.pnccd.rst. Creating file ./api/XFELDetAna.plotting.rst. Creating file ./api/XFELDetAna.util.rst. Creating file ./api/modules.rst. loading translations [en]... done making output directory... loading intersphinx inventory from http://matplotlib.sourceforge.net/objects.inv... intersphinx inventory has moved: http://matplotlib.sourceforge.net/objects.inv -> https://matplotlib.org/objects.inv loading intersphinx inventory from http://docs.python.org/2.7/objects.inv... intersphinx inventory has moved: http://docs.python.org/2.7/objects.inv -> https://docs.python.org/2.7/objects.inv loading intersphinx inventory from http://docs.scipy.org/doc/scipy/reference/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/scipy/reference/objects.inv -> https://docs.scipy.org/doc/scipy/reference/objects.inv loading intersphinx inventory from http://docs.scipy.org/doc/numpy/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/numpy/objects.inv -> https://docs.scipy.org/doc/numpy/objects.inv building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 30 added, 0 changed, 0 removed reading sources... [ 3%] _notebooks/DataGeneratorExample reading sources... [ 6%] _notebooks/PlotExamples reading sources... [ 10%] _notebooks/calculatorCreation reading sources... [ 13%] _notebooks/gainMapStability reading sources... [ 16%] _notebooks/index reading sources... [ 20%] api/XFELDetAna Plotting not available No module named 'matplotlib.collections' reading sources... [ 23%] api/XFELDetAna.algorithms reading sources... [ 26%] api/XFELDetAna.algorithms.gpu reading sources... [ 30%] api/XFELDetAna.algorithms.gpu.kernels reading sources... [ 33%] api/XFELDetAna.algorithms.tests reading sources... [ 36%] api/XFELDetAna.core reading sources... [ 40%] api/XFELDetAna.detectors reading sources... [ 43%] api/XFELDetAna.detectors.agipd reading sources... [ 46%] api/XFELDetAna.detectors.agipd.dyrange_algorithms reading sources... [ 50%] api/XFELDetAna.detectors.agipd.gpu reading sources... [ 53%] api/XFELDetAna.detectors.agipd.gpu.kernels reading sources... [ 56%] api/XFELDetAna.detectors.agipd.tests reading sources... [ 60%] api/XFELDetAna.detectors.dssc reading sources... [ 63%] api/XFELDetAna.detectors.edf_data reading sources... [ 66%] api/XFELDetAna.detectors.epix reading sources... [ 70%] api/XFELDetAna.detectors.fastccd reading sources... [ 73%] api/XFELDetAna.detectors.generator reading sources... [ 76%] api/XFELDetAna.detectors.jungfrau reading sources... [ 80%] api/XFELDetAna.detectors.lpd reading sources... [ 83%] api/XFELDetAna.detectors.pnccd reading sources... [ 86%] api/XFELDetAna.plotting reading sources... [ 90%] api/XFELDetAna.util reading sources... [ 93%] api/modules reading sources... [ 96%] index reading sources... [100%] installation /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. RemovedInSphinx20Warning) /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:18: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:24: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:44: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:48: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:54: WARNING: Unknown interpreted text role "raw-latex". WARNING: autodoc: failed to import module 'xfelpycaltools' from module 'XFELDetAna'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:7: WARNING: toctree contains reference to nonexisting document 'api/XFELDetAna.algorithms.cython' WARNING: autodoc: failed to import module 'characterize_cti' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'characterize_noise' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'characterize_relgain' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_cti' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_offset' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_relgain' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correction' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator:38: WARNING: Unknown interpreted text role "method". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator.get:26: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: autodoc: failed to import module 'statistics' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:88: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/gpu/correct_common_mode.py:docstring of XFELDetAna.algorithms.gpu.correct_common_mode._gpuCommonMode:11: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:12: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:56: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst:49: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst WARNING: autodoc: failed to import module 'test_characterize_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_characterize_noise' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_rel_gain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_characterize_split_events' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_common_mode' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_correct_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_relgain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_statistics' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_unitary' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'testing_base' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:69: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/core/reader.py:docstring of XFELDetAna.core.reader.ChunkReader.readChunks:8: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:34: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst:20: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst WARNING: autodoc: failed to import module 'characterize_dynrange' from module 'XFELDetAna.detectors.agipd'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'threshold_gain' from module 'XFELDetAna.detectors.agipd'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:38: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:15: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:29: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:15: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of 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/user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.GetData:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:3: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:5: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of 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WARNING: autodoc: failed to import module 'cluster' from module 'XFELDetAna.util'; the following exception was raised: No module named 'psutil' WARNING: __all__ should be a list of strings, not .wrapped at 0x7fd42e6852f0> (in module XFELDetAna.util.knumpy) -- ignoring __all__ /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:34: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst /user_builds/pydetlib/checkouts/latest/lib/docs/index.rst:7: WARNING: Title underline too short. Welcome to XFEL Detector Tools' documentation! =============================== looking for now-outdated files... none found pickling environment... done checking consistency... done processing src.tex...index installation _notebooks/index _notebooks/gainMapStability _notebooks/DataGeneratorExample _notebooks/calculatorCreation _notebooks/PlotExamples api/modules api/XFELDetAna api/XFELDetAna.algorithms api/XFELDetAna.algorithms.gpu api/XFELDetAna.algorithms.gpu.kernels api/XFELDetAna.algorithms.tests api/XFELDetAna.core api/XFELDetAna.detectors api/XFELDetAna.detectors.agipd api/XFELDetAna.detectors.agipd.dyrange_algorithms api/XFELDetAna.detectors.agipd.gpu api/XFELDetAna.detectors.agipd.gpu.kernels api/XFELDetAna.detectors.agipd.tests api/XFELDetAna.detectors.dssc api/XFELDetAna.detectors.edf_data api/XFELDetAna.detectors.epix api/XFELDetAna.detectors.fastccd api/XFELDetAna.detectors.generator api/XFELDetAna.detectors.jungfrau api/XFELDetAna.detectors.lpd api/XFELDetAna.detectors.pnccd api/XFELDetAna.plotting api/XFELDetAna.util resolving references... writing... done copying images... 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Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). [rtd-command-info] start-time: 2019-07-09T09:07:13.057000Z, end-time: 2019-07-09T09:07:19.943000Z, duration: 6, exit-code: 0 pdflatex -interaction=nonstopmode /user_builds/pydetlib/checkouts/latest/doc/_build/latex/src.tex This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (/user_builds/pydetlib/checkouts/latest/doc/_build/latex/src.tex LaTeX2e <2014/05/01> Babel <3.9l> and hyphenation patterns for 2 languages loaded. 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[112] [113] [114] Underfull \hbox (badness 10000) in paragraph at lines 6211--6213 []\T1/ptm/m/n/10 Usually the Underfull \hbox (badness 10000) in paragraph at lines 6251--6259 []\T1/ptm/m/n/10 __init__(self,FileName) Get-N-u-mIm-ages(self) def Get-Data(se lf,Index, Underfull \hbox (badness 10000) in paragraph at lines 6251--6259 \T1/ptm/m/n/10 DataType=^^Q^^P,Pos=None,Size=None): Get-Pixel(self,Index,Positi on) Get-H-eader(self,Index) Get-Static- Overfull \hbox (4.81061pt too wide) in paragraph at lines 6251--6259 \T1/ptm/m/n/10 Header(self,Index) WriteIm-age (self,Header,Data,Append=1,DataTy pe=^^Q^^P,WriteAsUnsigened=0,ByteOrder=^^Q^^P) [115] LaTeX Warning: Hyper reference `api/XFELDetAna.detectors.edf_data:XFELDetAna.de tectors.edf_data.EdfFile.EdfFile' on page 116 undefined on input line 6338. [116] LaTeX Warning: Hyper reference `api/XFELDetAna.detectors.edf_data:XFELDetAna.de tectors.edf_data.EdfFile.EdfFile' on page 117 undefined on input line 6507. 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[121] [122] [123] [124] Underfull \hbox (badness 10000) in paragraph at lines 7347--7349 []\T1/ptm/m/n/10 Usually the [125] [126] [127] Underfull \hbox (badness 10000) in paragraph at lines 7815--7816 []\T1/pcr/b/n/10 will be passed to the matplotlib fill_between() function. [128] [129] [130] [131] [132] LaTeX Warning: Hyper reference `api/XFELDetAna.util:XFELDetAna.util.knumpy.axis Meaning' on page 133 undefined on input line 8821. [133] [134] [135] LaTeX Warning: Hyper reference `api/XFELDetAna.util:XFELDetAna.util.knumpy.axis Meaning' on page 136 undefined on input line 9393. LaTeX Warning: Hyper reference `api/XFELDetAna.util:XFELDetAna.util.knumpy.axis Meaning' on page 136 undefined on input line 9401. LaTeX Warning: Hyper reference `api/XFELDetAna.util:XFELDetAna.util.knumpy.axis Meaning' on page 136 undefined on input line 9409. 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LaTeX Warning: Reference `api/XFELDetAna.util:module-XFELDetAna.util.pattern_ke rnels' on page 150 undefined on input line 11547. LaTeX Warning: Reference `api/XFELDetAna:module-XFELDetAna.xfelprofiler' on pag e 150 undefined on input line 11548. LaTeX Warning: Reference `api/XFELDetAna:module-XFELDetAna.xfelpyanatools' on p age 150 undefined on input line 11549. LaTeX Warning: Reference `api/XFELDetAna:module-XFELDetAna.xfelreaders' on page 150 undefined on input line 11550. LaTeX Warning: Reference `api/XFELDetAna:module-XFELDetAna.xfelsettings' on pag e 150 undefined on input line 11551. [150] No file src.ind. (./src.aux) Package rerunfilecheck Warning: File `src.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on src.pdf (154 pages, 2511847 bytes). Transcript written on src.log. [rtd-command-info] start-time: 2019-07-09T09:07:20.022000Z, end-time: 2019-07-09T09:07:20.132000Z, duration: 0, exit-code: 0 makeindex -s python.ist src.idx This is makeindex, version 2.15 [TeX Live 2015/dev] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file src.idx....done (902 entries accepted, 0 rejected). Sorting entries..........done (10393 comparisons). Generating output file src.ind....done (1273 lines written, 0 warnings). Output written in src.ind. Transcript written in src.ilg. [rtd-command-info] start-time: 2019-07-09T09:07:20.189000Z, end-time: 2019-07-09T09:07:27.628000Z, duration: 7, exit-code: 0 pdflatex -interaction=nonstopmode /user_builds/pydetlib/checkouts/latest/doc/_build/latex/src.tex This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (/user_builds/pydetlib/checkouts/latest/doc/_build/latex/src.tex LaTeX2e <2014/05/01> Babel <3.9l> and hyphenation patterns for 2 languages loaded. 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(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [3] [4] Chapter 2. [5] [6] Chapter 3. 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dType=\T1/ptm/m/n/10 , Overfull \hbox (13.76465pt too wide) in paragraph at lines 3603--3603 \T1/ptm/m/it/10 **kwargs\T1/pcr/m/n/10 ) [92] Underfull \hbox (badness 10000) in paragraph at lines 3740--3740 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , \T1/ptm/m/it/10 bins\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 3740--3740 \T1/ptm/m/it/10 range\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , [93] Underfull \hbox (badness 5954) in paragraph at lines 3794--3796 []\T1/ptm/m/n/10 complete sen-sor but on a per- [94] [95] [96] Underfull \hbox (badness 10000) in paragraph at lines 4162--4163 []\T1/pcr/b/n/10 function. For any 1-d vector in this list it will be Underfull \hbox (badness 10000) in paragraph at lines 4165--4166 []\T1/pcr/b/n/10 to mask/remove data as is done with the data block. Underfull \hbox (badness 10000) in paragraph at lines 4171--4172 []\T1/pcr/b/n/10 where True denotes remove of an image at this position. Underfull \hbox (badness 10000) in paragraph at lines 4174--4175 []\T1/pcr/b/n/10 indices is given, the evaluation function is NOT evaluated. Underfull \hbox (badness 10000) in paragraph at lines 4195--4195 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , \T1/ptm/m/it/10 fil-l-Value=None\T1/ptm /m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4195--4195 \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dType= for immediate help. ... l.4390 \item {} \begin{description} [99] Underfull \hbox (badness 5711) in paragraph at lines 4423--4426 []\T1/ptm/m/n/10 the iden-ti-fied pat- [100] Underfull \hbox (badness 10000) in paragraph at lines 4577--4577 \T1/ptm/m/it/10 nCells=1, dType=\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4639--4639 []\T1/ptm/m/it/10 offsetmap\T1/ptm/m/n/10 , \T1/ptm/m/it/10 noisemap\T1/ptm/m/n /10 , [101] Underfull \hbox (badness 10000) in paragraph at lines 4748--4748 []\T1/ptm/m/it/10 offsetmap\T1/ptm/m/n/10 , \T1/ptm/m/it/10 noisemap\T1/ptm/m/n /10 , [102] Underfull \hbox (badness 10000) in paragraph at lines 4822--4822 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , \T1/ptm/m/it/10 par-al-lel=Tru e\T1/ptm/m/n/10 , [103] [104] Underfull \hbox (badness 10000) in paragraph at lines 5147--5147 []\T1/ptm/m/it/10 functionsToProfile\T1/ptm/m/n/10 , \T1/ptm/m/it/10 val-uesTo- VaryCpu\T1/ptm/m/n/10 , \T1/ptm/m/it/10 val-uesTo- Underfull \hbox (badness 10000) in paragraph at lines 5147--5147 \T1/ptm/m/it/10 VaryGpu=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 nRe-peats=None\T1/ ptm/m/n/10 , \T1/ptm/m/it/10 val-uesTo-P-re- Underfull \hbox (badness 7081) in paragraph at lines 5159--5159 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 read-Fun\T1/ptm/m/n/ 10 , \T1/ptm/m/it/10 size\T1/ptm/m/n/10 , \T1/ptm/m/it/10 chunk-Size\T1/ptm/m/n /10 , \T1/ptm/m/it/10 *args\T1/ptm/m/n/10 , [105] Overfull \hbox (131.85474pt too wide) in paragraph at lines 5268--5268 []\T1/ptm/m/it/10 asic, Overfull \hbox (124.35486pt too wide) in paragraph at lines 5268--5268 \T1/ptm/m/it/10 in- Overfull \hbox (145.64474pt too wide) in paragraph at lines 5268--5268 \T1/ptm/m/it/10 put_file, Overfull \hbox (129.35486pt too wide) in paragraph at lines 5268--5268 \T1/ptm/m/it/10 out- Overfull \hbox (172.30466pt too wide) in paragraph at lines 5268--5268 \T1/ptm/m/it/10 put_file_name, Overfull \hbox (181.83458pt too wide) in paragraph at lines 5268--5268 \T1/ptm/m/it/10 max_part=None, Overfull \hbox (173.7644pt too wide) in paragraph at lines 5268--5268 \T1/ptm/m/it/10 col_spec=[0]\T1/pcr/m/n/10 ) [106] [107] Overfull \hbox (101.85474pt too wide) in paragraph at lines 5460--5460 []\T1/ptm/m/it/10 asic, Overfull \hbox (94.35486pt too wide) in paragraph at lines 5460--5460 \T1/ptm/m/it/10 in- Overfull \hbox (115.64474pt too wide) in paragraph at lines 5460--5460 \T1/ptm/m/it/10 put_file, Overfull \hbox (99.35486pt too wide) in paragraph at lines 5460--5460 \T1/ptm/m/it/10 out- Overfull \hbox (142.30466pt too wide) in paragraph at lines 5460--5460 \T1/ptm/m/it/10 put_file_name, Overfull \hbox (151.83458pt too wide) in paragraph at lines 5460--5460 \T1/ptm/m/it/10 max_part=None, Overfull \hbox (140.2644pt too wide) in paragraph at lines 5460--5460 \T1/ptm/m/it/10 col_spec=[0], Overfull \hbox (105.2549pt too wide) in paragraph at lines 5460--5460 \T1/ptm/m/it/10 back- Overfull \hbox (151.74435pt too wide) in paragraph at lines 5460--5460 \T1/ptm/m/it/10 ing_store=True\T1/pcr/m/n/10 ) [108] [109] Overfull \hbox (29.85474pt too wide) in paragraph at lines 5691--5691 []\T1/ptm/m/it/10 asic\T1/ptm/m/n/10 , Overfull \hbox (22.35486pt too wide) in paragraph at lines 5691--5691 \T1/ptm/m/it/10 in- Overfull \hbox (55.9647pt too wide) in paragraph at lines 5691--5691 \T1/ptm/m/it/10 put_fname\T1/ptm/m/n/10 , Overfull \hbox (59.85419pt too wide) in paragraph at lines 5691--5691 \T1/ptm/m/it/10 pixel_v_list\T1/ptm/m/n/10 , Overfull \hbox (60.41425pt too wide) in paragraph at lines 5691--5691 \T1/ptm/m/it/10 pixel_u_list\T1/ptm/m/n/10 , Overfull \hbox (69.29413pt too wide) in paragraph at lines 5691--5691 \T1/ptm/m/it/10 mem_cell_list\T1/ptm/m/n/10 , Overfull \hbox (62.17444pt too wide) in paragraph at lines 5691--5691 \T1/ptm/m/it/10 n_processes\T1/ptm/m/n/10 , Overfull \hbox (65.96419pt too wide) in paragraph at lines 5691--5691 \T1/ptm/m/it/10 safety_factor\T1/ptm/m/n/10 , Overfull \hbox (27.35486pt too wide) in paragraph at lines 5691--5691 \T1/ptm/m/it/10 out- Overfull \hbox (55.9647pt too wide) in paragraph at lines 5691--5691 \T1/ptm/m/it/10 put_fname\T1/ptm/m/n/10 , Overfull \hbox (69.83406pt too wide) in paragraph at lines 5691--5691 \T1/ptm/m/it/10 reuse_results\T1/pcr/m/n/10 ) Overfull \hbox (11.85474pt too wide) in paragraph at lines 5741--5741 []\T1/ptm/m/it/10 asic\T1/ptm/m/n/10 , Overfull \hbox (4.35486pt too wide) in paragraph at lines 5741--5741 \T1/ptm/m/it/10 in- Overfull \hbox (65.82457pt too wide) in paragraph at lines 5741--5741 \T1/ptm/m/it/10 put_fname=None\T1/ptm/m/n/10 , Overfull \hbox (9.35486pt too wide) in paragraph at lines 5741--5741 \T1/ptm/m/it/10 out- Overfull \hbox (65.82457pt too wide) in paragraph at lines 5741--5741 \T1/ptm/m/it/10 put_fname=None\T1/ptm/m/n/10 , Overfull \hbox (74.71419pt too wide) in paragraph at lines 5741--5741 \T1/ptm/m/it/10 safety_factor=1000\T1/ptm/m/n/10 , Overfull \hbox (66.56442pt too wide) in paragraph at lines 5741--5741 \T1/ptm/m/it/10 plot_prefix=None\T1/ptm/m/n/10 , Overfull \hbox (55.83444pt too wide) in paragraph at lines 5741--5741 \T1/ptm/m/it/10 plot_dir=None\T1/ptm/m/n/10 , Overfull \hbox (8.97473pt too wide) in paragraph at lines 5741--5741 \T1/ptm/m/it/10 cre- Overfull \hbox (60.63423pt too wide) in paragraph at lines 5741--5741 \T1/ptm/m/it/10 ate_plots=False\T1/ptm/m/n/10 , Overfull \hbox (64.62431pt too wide) in paragraph at lines 5741--5741 \T1/ptm/m/it/10 log_level='info'\T1/pcr/m/n/10 ) [110] Overfull \hbox (30.16438pt too wide) in paragraph at lines 5843--5843 []\T1/ptm/m/it/10 list_to_check\T1/ptm/m/n/10 , Overfull \hbox (32.12476pt too wide) in paragraph at lines 5849--5849 []\T1/ptm/m/it/10 file_name\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 5855--5855 []\T1/ptm/m/it/10 asic\T1/ptm/m/n/10 , \T1/ptm/m/it/10 in- Underfull \hbox (badness 10000) in paragraph at lines 5855--5855 \T1/ptm/m/it/10 put_file\T1/ptm/m/n/10 , Overfull \hbox (5.85419pt too wide) in paragraph at lines 5855--5855 \T1/ptm/m/it/10 pixel_v_list\T1/ptm/m/n/10 , Overfull \hbox (6.41425pt too wide) in paragraph at lines 5855--5855 \T1/ptm/m/it/10 pixel_u_list\T1/ptm/m/n/10 , Overfull \hbox (15.29413pt too wide) in paragraph at lines 5855--5855 \T1/ptm/m/it/10 mem_cell_list\T1/ptm/m/n/10 , Overfull \hbox (15.69415pt too wide) in paragraph at lines 5855--5855 \T1/ptm/m/it/10 safety_factor\T1/pcr/m/n/10 ) Underfull \hbox (badness 10000) in paragraph at lines 5861--5861 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , Overfull \hbox (23.85419pt too wide) in paragraph at lines 5867--5867 []\T1/ptm/m/it/10 pixel_v_list\T1/ptm/m/n/10 , Overfull \hbox (24.41425pt too wide) in paragraph at lines 5867--5867 \T1/ptm/m/it/10 pixel_u_list\T1/ptm/m/n/10 , Overfull \hbox (33.29413pt too wide) in paragraph at lines 5867--5867 \T1/ptm/m/it/10 mem_cell_list\T1/ptm/m/n/10 , Overfull \hbox (35.32454pt too wide) in paragraph at lines 5867--5867 \T1/ptm/m/it/10 n_gain_stages\T1/ptm/m/n/10 , Overfull \hbox (22.74435pt too wide) in paragraph at lines 5867--5867 \T1/ptm/m/it/10 n_intervals\T1/ptm/m/n/10 , Overfull \hbox (71.82416pt too wide) in paragraph at lines 5867--5867 \T1/ptm/m/it/10 n_diff_changes_stored\T1/pcr/m/n/10 ) Overfull \hbox (14.12476pt too wide) in paragraph at lines 5879--5879 []\T1/ptm/m/it/10 file_name\T1/pcr/m/n/10 ) [111] Overfull \hbox (7.07484pt too wide) in paragraph at lines 5923--5923 []\T1/ptm/m/it/10 shape\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5923--5923 \T1/ptm/m/it/10 pro- Overfull \hbox (31.70407pt too wide) in paragraph at lines 5923--5923 \T1/ptm/m/it/10 cess_results\T1/ptm/m/n/10 , Overfull \hbox (37.2843pt too wide) in paragraph at lines 5923--5923 \T1/ptm/m/it/10 asics=array([ Underfull \hbox (badness 10000) in paragraph at lines 5923--5923 \T1/ptm/m/it/10 9\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5923--5923 \T1/ptm/m/it/10 10\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5923--5923 \T1/ptm/m/it/10 11\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5923--5923 \T1/ptm/m/it/10 12\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5923--5923 \T1/ptm/m/it/10 13\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5923--5923 \T1/ptm/m/it/10 14\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5923--5923 \T1/ptm/m/it/10 15\T1/ptm/m/n/10 , Overfull \hbox (0.96486pt too wide) in paragraph at lines 5923--5923 \T1/ptm/m/it/10 16])\T1/ptm/m/n/10 , Overfull \hbox (21.05455pt too wide) in paragraph at lines 5923--5923 \T1/ptm/m/it/10 nCells=1\T1/ptm/m/n/10 , Overfull \hbox (38.44444pt too wide) in paragraph at lines 5923--5923 \T1/ptm/m/it/10 dType=\T1/ptm/m/n/10 , Overfull \hbox (25.76465pt too wide) in paragraph at lines 5923--5923 \T1/ptm/m/it/10 **kwargs\T1/pcr/m/n/10 ) [112] [113] [114] Underfull \hbox (badness 10000) in paragraph at lines 6211--6213 []\T1/ptm/m/n/10 Usually the Underfull \hbox (badness 10000) in paragraph at lines 6251--6259 []\T1/ptm/m/n/10 __init__(self,FileName) Get-N-u-mIm-ages(self) def Get-Data(se lf,Index, Underfull \hbox (badness 10000) in paragraph at lines 6251--6259 \T1/ptm/m/n/10 DataType=^^Q^^P,Pos=None,Size=None): Get-Pixel(self,Index,Positi on) Get-H-eader(self,Index) Get-Static- Overfull \hbox (4.81061pt too wide) in paragraph at lines 6251--6259 \T1/ptm/m/n/10 Header(self,Index) WriteIm-age (self,Header,Data,Append=1,DataTy pe=^^Q^^P,WriteAsUnsigened=0,ByteOrder=^^Q^^P) [115] [116] [117] [118] [119] Underfull \hbox (badness 10000) in paragraph at lines 6906--6906 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , \T1/ptm/m/it/10 path='/stream'\T1/pt m/m/n/10 , [120] Underfull \hbox (badness 10000) in paragraph at lines 6993--6993 []\T1/ptm/m/it/10 filename\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6993--6993 \T1/ptm/m/it/10 read- Underfull \hbox (badness 10000) in paragraph at lines 6993--6993 \T1/ptm/m/it/10 Fun\T1/ptm/m/n/10 , \T1/ptm/m/it/10 size\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6993--6993 \T1/ptm/m/it/10 chunk-Size\T1/ptm/m/n/10 , Overfull \hbox (23.16454pt too wide) in paragraph at lines 6993--6993 \T1/ptm/m/it/10 filesRange=None\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 6993--6993 \T1/ptm/m/it/10 *args\T1/ptm/m/n/10 , [121] [122] [123] [124] Underfull \hbox (badness 10000) in paragraph at lines 7347--7349 []\T1/ptm/m/n/10 Usually the [125] [126] [127] Underfull \hbox (badness 10000) in paragraph at lines 7815--7816 []\T1/pcr/b/n/10 will be passed to the matplotlib fill_between() function. [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] Underfull \hbox (badness 10000) in paragraph at lines 11252--11252 []\T1/ptm/m/it/10 host=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 port=None\T1/ptm/m/ n/10 , \T1/ptm/m/it/10 read-Han- Underfull \hbox (badness 10000) in paragraph at lines 11272--11272 []\T1/ptm/m/it/10 host=None\T1/ptm/m/n/10 , \T1/ptm/m/it/10 port=None\T1/ptm/m/ n/10 , \T1/ptm/m/it/10 read-Han- [145] [146] Chapter 5. [147] [148] Overfull \hbox (18.6225pt too wide) in paragraph at lines 11472--11473 []\T1/pcr/m/n/10 XFELDetAna.algorithms.correct_common_mode\T1/ptm/m/n/10 , Overfull \hbox (54.6225pt too wide) in paragraph at lines 11474--11475 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.calc_offset_and_noise\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 11475--11476 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.correct_common_mode\T1/ptm/m/n/10 , Overfull \hbox (12.6225pt too wide) in paragraph at lines 11476--11477 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.correct_offset\T1/ptm/m/n/10 , Overfull \hbox (18.6225pt too wide) in paragraph at lines 11477--11478 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.correct_relgain\T1/ptm/m/n/10 , Overfull \hbox (102.6225pt too wide) in paragraph at lines 11479--11480 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.calc_offset_and_noise\T1/ptm /m/n/10 , Overfull \hbox (90.6225pt too wide) in paragraph at lines 11480--11481 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m /n/10 , Overfull \hbox (138.6225pt too wide) in paragraph at lines 11481--11482 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.correct_common_mode_batcher\ T1/ptm/m/n/10 , Overfull \hbox (78.6225pt too wide) in paragraph at lines 11482--11483 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.simple_correction\T1/ptm/m/n /10 , Overfull \hbox (48.6225pt too wide) in paragraph at lines 11483--11484 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.split_events\T1/ptm/m/n/10 , Overfull \hbox (36.6225pt too wide) in paragraph at lines 11484--11485 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.statistics\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 11485--11486 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.util\T1/ptm/m/n/10 , Overfull \hbox (60.6225pt too wide) in paragraph at lines 11486--11487 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.kernels.xfelgpukernels\T1/ptm/m/n/10 , Overfull \hbox (0.6225pt too wide) in paragraph at lines 11487--11488 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.split_events\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 11488--11489 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.statistics\T1/ptm/m/n/10 , Overfull \hbox (18.6225pt too wide) in paragraph at lines 11490--11491 []\T1/pcr/m/n/10 XFELDetAna.algorithms.gpu.xfelcalgputools\T1/ptm/m/n/10 , Overfull \hbox (42.6225pt too wide) in paragraph at lines 11505--11506 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms\T1/ptm/m/n/10 , Overfull \hbox (84.6225pt too wide) in paragraph at lines 11506--11507 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms.gather\T1/ptm/m/ n/10 , Overfull \hbox (90.6225pt too wide) in paragraph at lines 11507--11508 []\T1/pcr/m/n/10 XFELDetAna.detectors.agipd.dyrange_algorithms.process\T1/ptm/m /n/10 , Overfull \hbox (72.6225pt too wide) in paragraph at lines 11508--11509 []\T1/pcr/m/n/10 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lines 8--9 []\T1/pcr/m/n/10 _axisFuncWrapper() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 9--11 []\T1/pcr/m/n/10 _commonmodeBase3d \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule X FELDe- Overfull \hbox (26.01056pt too wide) in paragraph at lines 9--11 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Overfull \hbox (26.01056pt too wide) in paragraph at lines 11--13 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 13--15 []\T1/pcr/m/n/10 _commonmodeBase3dBitonicZ1 Underfull \hbox (badness 10000) in paragraph at lines 13--15 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Overfull \hbox (26.01056pt too wide) in paragraph at lines 13--15 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 15--16 []\T1/pcr/m/n/10 _decorateModule() 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tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 187--189 []\T1/pcr/m/n/10 commonmode3dBitonic \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Overfull \hbox (26.01056pt too wide) in paragraph at lines 187--189 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Underfull \hbox (badness 5331) in paragraph at lines 189--191 []\T1/pcr/m/n/10 commonmode3dBitonicZ1 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le XFELDe- Overfull \hbox (26.01056pt too wide) in paragraph at lines 189--191 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Underfull \hbox (badness 5331) in paragraph at lines 191--193 []\T1/pcr/m/n/10 commonmode3dNetwork() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-u le XFELDe- Overfull \hbox (61.64029pt too wide) in paragraph at lines 191--193 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode_batcher\T1/ptm/ m/n/10 ), Underfull \hbox 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lines 595--597 []\T1/pcr/m/n/10 integrate_result() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (74.74982pt too wide) in paragraph at lines 595--597 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.ParallelProcess Underfull \hbox (badness 10000) in paragraph at lines 598--599 []\T1/pcr/m/n/10 intersect1d() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 602--603 []\T1/pcr/m/n/10 invertADC \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 608--609 []\T1/pcr/m/n/10 iscomplexobj() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFEL De- Underfull \hbox (badness 10000) in paragraph at lines 609--610 []\T1/pcr/m/n/10 isEnabled() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.core.p rofiler.Profiler [158] Underfull \hbox (badness 10000) in paragraph at lines 622--623 []\T1/pcr/m/n/10 issubclass_() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox 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ern_kernels.patternkernels Overfull \hbox (18.9701pt too wide) in paragraph at lines 666--668 []\T1/pcr/m/n/10 kernelT5 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.util.patt ern_kernels.patternkernels Overfull \hbox (18.9701pt too wide) in paragraph at lines 668--670 []\T1/pcr/m/n/10 kernelT6 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.util.patt ern_kernels.patternkernels Overfull \hbox (18.9701pt too wide) in paragraph at lines 670--672 []\T1/pcr/m/n/10 kernelT7 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.util.patt ern_kernels.patternkernels Overfull \hbox (18.9701pt too wide) in paragraph at lines 672--674 []\T1/pcr/m/n/10 kernelT8 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.util.patt ern_kernels.patternkernels Overfull \hbox (18.9701pt too wide) in paragraph at lines 674--676 []\T1/pcr/m/n/10 kernelT9 \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.util.patt ern_kernels.patternkernels Underfull \hbox (badness 10000) in paragraph at lines 677--678 []\T1/pcr/m/n/10 krbMaskedArray 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logical_not() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 710--711 []\T1/pcr/m/n/10 logical_xor() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 720--721 []\T1/pcr/m/n/10 make_colormap() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFE LDe- Underfull \hbox (badness 10000) in paragraph at lines 721--723 []\T1/pcr/m/n/10 makeReport() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 721--723 \T1/ptm/m/it/10 tAna.core.mapcalculator.MapCalculator Underfull \hbox (badness 10000) in paragraph at lines 723--724 []\T1/pcr/m/n/10 MapCalculator \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Underfull \hbox (badness 7963) in paragraph at lines 724--726 []\T1/pcr/m/n/10 MASK \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.algorithms.se lection.DataSelector Underfull \hbox (badness 10000) in paragraph at lines 726--727 []\T1/pcr/m/n/10 mask_indices() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFEL De- Underfull \hbox (badness 10000) in paragraph at lines 735--736 []\T1/pcr/m/n/10 maximum_sctype() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XF ELDe- Underfull \hbox (badness 10000) in paragraph at lines 736--737 []\T1/pcr/m/n/10 MAY_SHARE_BOUNDS() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 737--738 []\T1/pcr/m/n/10 MAY_SHARE_EXACT() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule X FELDe- Underfull \hbox (badness 10000) in paragraph at lines 738--739 []\T1/pcr/m/n/10 may_share_memory() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 741--743 []\T1/pcr/m/n/10 median3d \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Overfull \hbox (26.01056pt too wide) in paragraph at lines 741--743 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 743--745 []\T1/pcr/m/n/10 median3dBitonic \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFE LDe- Overfull \hbox (26.01056pt too wide) in paragraph at lines 743--745 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 745--747 []\T1/pcr/m/n/10 median3dNetwork() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule X FELDe- Overfull \hbox (61.64029pt too wide) in paragraph at lines 745--747 \T1/ptm/m/it/10 tAna.algorithms.gpu.kernels.correct_common_mode_batcher\T1/ptm/ m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 748--750 []\T1/pcr/m/n/10 MergeDrscs \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 753--754 []\T1/pcr/m/n/10 min_scalar_type() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule X FELDe- Underfull \hbox (badness 10000) in paragraph at lines 755--756 []\T1/pcr/m/n/10 mintypecode() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 759--761 []\T1/pcr/m/n/10 ModuleDeprecationWarning() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 779--780 []\T1/pcr/m/n/10 nanpercentile() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFE LDe- [160] Underfull \hbox (badness 10000) in paragraph at lines 781--782 []\T1/pcr/m/n/10 nanquantile() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 786--787 []\T1/pcr/m/n/10 ndenumerate() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 791--792 []\T1/pcr/m/n/10 nested_iters() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFEL De- Underfull \hbox (badness 10000) in paragraph at lines 795--797 []\T1/pcr/m/n/10 non_empty_trains() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 807--809 []\T1/pcr/m/n/10 oddeven_merge() 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\T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe - Underfull \hbox (badness 10000) in paragraph at lines 823--824 []\T1/pcr/m/n/10 P2pInterface \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Underfull \hbox (badness 10000) in paragraph at lines 826--828 []\T1/pcr/m/n/10 ParallelProcess \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELD e- Overfull \hbox (15.04054pt too wide) in paragraph at lines 826--828 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 829--831 []\T1/pcr/m/n/10 PatternClassifier \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFE LDe- Underfull \hbox (badness 10000) in paragraph at lines 831--833 []\T1/pcr/m/n/10 patternkernels \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe - Underfull \hbox (badness 10000) in paragraph at lines 833--835 []\T1/pcr/m/n/10 PatternSelector \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELD e- Underfull \hbox (badness 10000) in paragraph at lines 836--837 []\T1/pcr/m/n/10 pertinent_kwargs() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Overfull \hbox (12.9701pt too wide) in paragraph at lines 840--842 []\T1/pcr/m/n/10 pkernel \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe-tAna.util.patte rn_kernels.patternkernels Underfull \hbox (badness 10000) in paragraph at lines 858--859 []\T1/pcr/m/n/10 prepare_maxwell() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule X FELDe- Underfull \hbox (badness 10000) in paragraph at lines 859--861 []\T1/pcr/m/n/10 print() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe- Overfull \hbox (15.04054pt too wide) in paragraph at lines 859--861 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 861--863 []\T1/pcr/m/n/10 printFormattedLogs() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- [161] Underfull \hbox (badness 10000) in paragraph at lines 863--864 []\T1/pcr/m/n/10 printoptions() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFEL De- Underfull \hbox (badness 10000) in paragraph at lines 864--866 []\T1/pcr/m/n/10 process() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (76.21066pt too wide) in paragraph at lines 864--866 \T1/ptm/m/it/10 tAna.detectors.agipd.merge_dynrange.AgipdMergeDynamicRange Underfull \hbox (badness 10000) in paragraph at lines 866--868 []\T1/pcr/m/n/10 process_data_point() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 XFELDe- Overfull \hbox (66.14977pt too wide) in paragraph at lines 866--868 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process.ProcessDrscs Underfull \hbox (badness 10000) in paragraph at lines 868--870 []\T1/pcr/m/n/10 ProcessDrscs \T1/ptm/m/n/10 (\T1/ptm/m/it/10 class in XFELDe- Overfull \hbox (15.04054pt too wide) in paragraph at lines 868--870 \T1/ptm/m/it/10 tAna.detectors.agipd.dyrange_algorithms.process\T1/ptm/m/n/10 ) , Underfull \hbox (badness 10000) in paragraph at lines 872--873 []\T1/pcr/m/n/10 profilable() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 in mod-ule XFELDe - 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on src.pdf (170 pages, 2574126 bytes). Transcript written on src.log. [rtd-command-info] start-time: 2019-07-09T09:07:27.747000Z, end-time: 2019-07-09T09:07:27.789000Z, duration: 0, exit-code: 0 mv -f /user_builds/pydetlib/checkouts/latest/doc/_build/latex/src.pdf /user_builds/pydetlib/artifacts/latest/sphinx_pdf/pydetlib.pdf [rtd-command-info] start-time: 2019-07-09T09:07:28.732000Z, end-time: 2019-07-09T09:08:16.099000Z, duration: 47, exit-code: 0 python /user_builds/pydetlib/envs/latest/bin/sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.8.5 mkdir: cannot create directory ‘_notebooks’: File exists [NbConvertApp] Converting notebook ../examples/gainMapStability.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in gainMapStability_files/ [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Making directory ./gainMapStability_files [NbConvertApp] Writing 48113 bytes to ./gainMapStability.rst [NbConvertApp] Converting notebook ../examples/DataGeneratorExample.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in DataGeneratorExample_files/ [NbConvertApp] Making directory ./DataGeneratorExample_files [NbConvertApp] Writing 1984559 bytes to ./DataGeneratorExample.rst [NbConvertApp] Converting notebook ../examples/calculatorCreation.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Writing 15602 bytes to ./calculatorCreation.rst [NbConvertApp] Converting notebook ../examples/PlotExamples.ipynb to rst /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Support files will be in PlotExamples_files/ [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Making directory ./PlotExamples_files [NbConvertApp] Writing 26595 bytes to ./PlotExamples.rst Creating file ./api/XFELDetAna.rst. Creating file ./api/XFELDetAna.algorithms.rst. Creating file ./api/XFELDetAna.algorithms.cython.rst. Creating file ./api/XFELDetAna.algorithms.gpu.rst. Creating file ./api/XFELDetAna.algorithms.gpu.kernels.rst. Creating file ./api/XFELDetAna.algorithms.tests.rst. Creating file ./api/XFELDetAna.core.rst. Creating file ./api/XFELDetAna.detectors.rst. Creating file ./api/XFELDetAna.detectors.agipd.rst. Creating file ./api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.rst. Creating file ./api/XFELDetAna.detectors.agipd.gpu.kernels.rst. Creating file ./api/XFELDetAna.detectors.agipd.tests.rst. Creating file ./api/XFELDetAna.detectors.dssc.rst. Creating file ./api/XFELDetAna.detectors.edf_data.rst. Creating file ./api/XFELDetAna.detectors.epix.rst. Creating file ./api/XFELDetAna.detectors.fastccd.rst. Creating file ./api/XFELDetAna.detectors.generator.rst. Creating file ./api/XFELDetAna.detectors.jungfrau.rst. Creating file ./api/XFELDetAna.detectors.lpd.rst. Creating file ./api/XFELDetAna.detectors.pnccd.rst. Creating file ./api/XFELDetAna.plotting.rst. Creating file ./api/XFELDetAna.util.rst. Creating file ./api/modules.rst. loading translations [en]... done making output directory... loading intersphinx inventory from http://docs.scipy.org/doc/scipy/reference/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/scipy/reference/objects.inv -> https://docs.scipy.org/doc/scipy/reference/objects.inv loading intersphinx inventory from http://docs.python.org/2.7/objects.inv... intersphinx inventory has moved: http://docs.python.org/2.7/objects.inv -> https://docs.python.org/2.7/objects.inv loading intersphinx inventory from http://docs.scipy.org/doc/numpy/objects.inv... intersphinx inventory has moved: http://docs.scipy.org/doc/numpy/objects.inv -> https://docs.scipy.org/doc/numpy/objects.inv loading intersphinx inventory from http://matplotlib.sourceforge.net/objects.inv... intersphinx inventory has moved: http://matplotlib.sourceforge.net/objects.inv -> https://matplotlib.org/objects.inv building [mo]: targets for 0 po files that are out of date building [epub]: targets for 30 source files that are out of date updating environment: 30 added, 0 changed, 0 removed reading sources... [ 3%] _notebooks/DataGeneratorExample reading sources... [ 6%] _notebooks/PlotExamples reading sources... [ 10%] _notebooks/calculatorCreation reading sources... [ 13%] _notebooks/gainMapStability reading sources... [ 16%] _notebooks/index reading sources... [ 20%] api/XFELDetAna Plotting not available No module named 'matplotlib.collections' reading sources... [ 23%] api/XFELDetAna.algorithms reading sources... [ 26%] api/XFELDetAna.algorithms.gpu reading sources... [ 30%] api/XFELDetAna.algorithms.gpu.kernels reading sources... [ 33%] api/XFELDetAna.algorithms.tests reading sources... [ 36%] api/XFELDetAna.core reading sources... [ 40%] api/XFELDetAna.detectors reading sources... [ 43%] api/XFELDetAna.detectors.agipd reading sources... [ 46%] api/XFELDetAna.detectors.agipd.dyrange_algorithms reading sources... [ 50%] api/XFELDetAna.detectors.agipd.gpu reading sources... [ 53%] api/XFELDetAna.detectors.agipd.gpu.kernels reading sources... [ 56%] api/XFELDetAna.detectors.agipd.tests reading sources... [ 60%] api/XFELDetAna.detectors.dssc reading sources... [ 63%] api/XFELDetAna.detectors.edf_data reading sources... [ 66%] api/XFELDetAna.detectors.epix reading sources... [ 70%] api/XFELDetAna.detectors.fastccd reading sources... [ 73%] api/XFELDetAna.detectors.generator reading sources... [ 76%] api/XFELDetAna.detectors.jungfrau reading sources... [ 80%] api/XFELDetAna.detectors.lpd reading sources... [ 83%] api/XFELDetAna.detectors.pnccd reading sources... [ 86%] api/XFELDetAna.plotting reading sources... [ 90%] api/XFELDetAna.util reading sources... [ 93%] api/modules reading sources... [ 96%] index reading sources... [100%] installation /user_builds/pydetlib/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. RemovedInSphinx20Warning) /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:18: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:24: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:44: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:48: WARNING: Unknown interpreted text role "raw-latex". /user_builds/pydetlib/checkouts/latest/lib/docs/_notebooks/gainMapStability.rst:54: WARNING: Unknown interpreted text role "raw-latex". WARNING: autodoc: failed to import module 'xfelpycaltools' from module 'XFELDetAna'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:7: WARNING: toctree contains reference to nonexisting document 'api/XFELDetAna.algorithms.cython' WARNING: autodoc: failed to import module 'characterize_cti' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'characterize_noise' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'characterize_relgain' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_cti' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_offset' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correct_relgain' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'correction' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator:38: WARNING: Unknown interpreted text role "method". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/histogram.py:docstring of XFELDetAna.algorithms.histogram.HistogramCalculator.get:26: WARNING: Definition list ends without a blank line; unexpected unindent. WARNING: autodoc: failed to import module 'statistics' from module 'XFELDetAna.algorithms'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst:88: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/algorithms/gpu/correct_common_mode.py:docstring of XFELDetAna.algorithms.gpu.correct_common_mode._gpuCommonMode:11: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:12: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst:56: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst:49: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst WARNING: autodoc: failed to import module 'test_characterize_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_characterize_noise' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_characterize_rel_gain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_characterize_split_events' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_common_mode' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_cti' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_correct_offset' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_correct_relgain' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'test_statistics' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'test_unitary' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' WARNING: autodoc: failed to import module 'testing_base' from module 'XFELDetAna.algorithms.tests'; the following exception was raised: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst:69: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/core/reader.py:docstring of XFELDetAna.core.reader.ChunkReader.readChunks:8: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst:34: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.tests.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.algorithms.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst:20: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst WARNING: autodoc: failed to import module 'characterize_dynrange' from module 'XFELDetAna.detectors.agipd'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'threshold_gain' from module 'XFELDetAna.detectors.agipd'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:14: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.core.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst:38: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.rst /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:15: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:29: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:5: WARNING: Unexpected section title or transition. ____________ /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:6: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:7: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:8: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:15: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:20: WARNING: Inline substitution_reference start-string without end-string. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:29: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:7: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:11: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/gather.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.gather.AgipdDynamicRangeGatherSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:7: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:11: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:21: WARNING: Undefined substitution referenced: "___________ |". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/agipd/dyrange_algorithms/process.py:docstring of XFELDetAna.detectors.agipd.dyrange_algorithms.process.AgipdDynamicRangeSingleAsic.get_data:25: WARNING: Undefined substitution referenced: "____________". /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst:24: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst:5: WARNING: duplicate label subpackages, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst:12: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst:21: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.dyrange_algorithms.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.kernels.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.kernels.rst:14: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.rst WARNING: autodoc: failed to import module 'test_threshold_gain' from module 'XFELDetAna.detectors.agipd.tests'; the following exception was raised: No module named 'psutil' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.tests.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.gpu.kernels.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.agipd.tests.rst:14: 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unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile:31: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile:44: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile:50: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.GetData:4: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.GetData:10: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.GetData:22: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:3: WARNING: Unexpected indentation. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:5: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:18: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/edf_data/EdfFile.py:docstring of XFELDetAna.detectors.edf_data.EdfFile.EdfFile.WriteImage:31: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.edf_data.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.dssc.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.edf_data.rst:24: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.dssc.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.epix.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.edf_data.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.epix.rst:14: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.edf_data.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.fastccd.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.epix.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.fastccd.rst:19: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.epix.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.generator.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.fastccd.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.generator.rst:14: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.fastccd.rst WARNING: autodoc: failed to import module 'characterize_jfgain' from module 'XFELDetAna.detectors.jungfrau'; the following exception was raised: No module named 'matplotlib.offsetbox' WARNING: autodoc: failed to import module 'fitFuncs' from module 'XFELDetAna.detectors.jungfrau'; the following exception was raised: No module named 'iminuit.util' /user_builds/pydetlib/checkouts/latest/lib/src/XFELDetAna/detectors/jungfrau/jf_chunk_reader.py:docstring of XFELDetAna.detectors.jungfrau.jf_chunk_reader.JFChunkReader.readChunks:10: WARNING: Definition list ends without a blank line; unexpected unindent. /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.generator.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst:39: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.generator.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.lpd.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.lpd.rst:14: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.jungfrau.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.pnccd.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.lpd.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.pnccd.rst:19: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.lpd.rst WARNING: autodoc: failed to import module 'heatmap' from module 'XFELDetAna.plotting'; the following exception was raised: No module named 'matplotlib.collections' WARNING: autodoc: failed to import module 'multidim' from module 'XFELDetAna.plotting'; the following exception was raised: No module named 'matplotlib.offsetbox' /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.pnccd.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst:34: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.detectors.pnccd.rst WARNING: autodoc: failed to import module 'cluster' from module 'XFELDetAna.util'; the following exception was raised: No module named 'psutil' WARNING: __all__ should be a list of strings, not .wrapped at 0x7f0148f7c8c8> (in module XFELDetAna.util.knumpy) -- ignoring __all__ /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:5: WARNING: duplicate label submodules, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.util.rst:34: WARNING: duplicate label module contents, other instance in /user_builds/pydetlib/checkouts/latest/lib/docs/api/XFELDetAna.plotting.rst /user_builds/pydetlib/checkouts/latest/lib/docs/index.rst:7: WARNING: Title underline too short. 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