Read the Docs build information Build id: 11473 Project: pydetlib-test2 Version: latest Commit: 2472a9ce7f576e9562ff983bd066ed75492361b5 Date: 2019-07-18T01:47:44.036051Z State: finished Success: True [rtd-command-info] start-time: 2019-07-18T06:48:03.379000Z, end-time: 2019-07-18T06:48:17.296000Z, duration: 13, exit-code: 0 python3 -mvirtualenv --no-site-packages --no-download /user_builds/pydetlib-test2/envs/latest Using base prefix '/usr' New python executable in /user_builds/pydetlib-test2/envs/latest/bin/python3 Not overwriting existing python script /user_builds/pydetlib-test2/envs/latest/bin/python (you must use /user_builds/pydetlib-test2/envs/latest/bin/python3) Installing setuptools, pip, wheel...done. [rtd-command-info] start-time: 2019-07-18T06:48:17.359000Z, end-time: 2019-07-18T06:48:59.101000Z, duration: 41, exit-code: 0 python /user_builds/pydetlib-test2/envs/latest/bin/pip install --use-wheel -U --cache-dir /user_builds/pydetlib-test2/.cache/pip sphinx==1.3.5 Pygments==2.1.3 setuptools==20.1.1 docutils==0.12 mkdocs==0.15.0 mock==1.0.1 pillow==2.6.1 git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext sphinx-rtd-theme==0.1.9 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.5.4 recommonmark==0.1.1 Collecting sphinx==1.3.5 Using cached https://files.pythonhosted.org/packages/ff/91/45883bc962bda1be7e78039b41cc15e1eb3327ec75679eedd067b5d07bd5/Sphinx-1.3.5-py2.py3-none-any.whl Requirement already up-to-date: Pygments==2.1.3 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages Collecting setuptools==20.1.1 Using cached https://files.pythonhosted.org/packages/e8/82/3b5455f74bf9ac0757d09c625b7741e6fc284d7519cffc3babb6c5173cf5/setuptools-20.1.1-py2.py3-none-any.whl Requirement already up-to-date: docutils==0.12 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: mkdocs==0.15.0 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: mock==1.0.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: pillow==2.6.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages Collecting readthedocs-sphinx-ext from git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext Cloning https://github.com/rtfd/readthedocs-sphinx-ext.git (to 0.6-alpha) to /tmp/pip-build-hed1k1fg/readthedocs-sphinx-ext Requirement already up-to-date: sphinx-rtd-theme==0.1.9 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: alabaster!=0.7.5,<0.8,>=0.7 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: commonmark==0.5.4 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: recommonmark==0.1.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: babel!=2.0,>=1.3 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: Jinja2>=2.3 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: six>=1.4 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: snowballstemmer>=1.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: livereload>=2.3.2 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: Markdown>=2.3.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: click>=4.0 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: mkdocs-bootstrap>=0.1.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: tornado>=4.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: mkdocs-bootswatch>=0.1.0 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: PyYAML>=3.10 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: requests in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from readthedocs-sphinx-ext) Requirement already up-to-date: nilsimsa>=0.3.7 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from readthedocs-sphinx-ext) Requirement already up-to-date: pytz>=2015.7 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from babel!=2.0,>=1.3->sphinx==1.3.5) Requirement already up-to-date: MarkupSafe>=0.23 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from Jinja2>=2.3->sphinx==1.3.5) Requirement already up-to-date: backports-abc>=0.4 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from tornado>=4.1->mkdocs==0.15.0) Requirement already up-to-date: chardet<3.1.0,>=3.0.2 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: idna<2.9,>=2.5 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: urllib3<1.25,>=1.21.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: certifi>=2017.4.17 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Installing collected packages: sphinx, setuptools, readthedocs-sphinx-ext Found existing installation: Sphinx 1.8.5 Uninstalling Sphinx-1.8.5: Successfully uninstalled Sphinx-1.8.5 Found existing installation: setuptools 28.8.0 Uninstalling setuptools-28.8.0: Successfully uninstalled setuptools-28.8.0 Found existing installation: readthedocs-sphinx-ext 0.5.4 Uninstalling readthedocs-sphinx-ext-0.5.4: Successfully uninstalled readthedocs-sphinx-ext-0.5.4 Running setup.py install for readthedocs-sphinx-ext: started Running setup.py install for readthedocs-sphinx-ext: finished with status 'done' Successfully installed readthedocs-sphinx-ext-0.5.4 setuptools-20.1.1 sphinx-1.3.5 You are using pip version 9.0.1, however version 19.1.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2019-07-18T06:48:59.166000Z, end-time: 2019-07-18T06:51:34.029000Z, duration: 154, exit-code: 0 python /user_builds/pydetlib-test2/envs/latest/bin/pip install --exists-action=w --cache-dir /user_builds/pydetlib-test2/.cache/pip -rrequirements.txt Collecting git+https://haufs:s--zGku2dzxtv6so2xsu@git.xfel.eu/gitlab/detectors/nbparameterise.git (from -r requirements.txt (line 1)) Cloning https://haufs:s--zGku2dzxtv6so2xsu@git.xfel.eu/gitlab/detectors/nbparameterise.git to /tmp/pip-yf5ojbok-build Collecting git+https://haufs:s--zGku2dzxtv6so2xsu@git.xfel.eu/gitlab/detectors/cal_db_interactive.git (from -r requirements.txt (line 2)) Cloning https://haufs:s--zGku2dzxtv6so2xsu@git.xfel.eu/gitlab/detectors/cal_db_interactive.git to /tmp/pip-t5d_aqg5-build Processing ./cal_tools Processing /user_builds/pydetlib-test2/checkouts/latest Collecting fabio (from -r requirements.txt (line 3)) Downloading https://files.pythonhosted.org/packages/ca/de/1559efb63bd04ab6ebe2b815f558189d476112736f6ff0e536927358d6ab/fabio-0.9.0-cp34-cp34m-manylinux1_x86_64.whl (1.8MB) Requirement already satisfied: pypandoc in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from -r requirements.txt (line 4)) Requirement already satisfied: nbconvert in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from -r requirements.txt (line 5)) Collecting astcheck (from -r requirements.txt (line 6)) Downloading https://files.pythonhosted.org/packages/8d/a7/23752054ffc65eca77b2137f88c3b4b8d196112b5e13e9536f194ab67756/astcheck-0.2.5-py2.py3-none-any.whl Collecting astsearch (from -r requirements.txt (line 7)) Downloading https://files.pythonhosted.org/packages/66/34/9d8c6052e0771289fdedea6ceeb4f2e7872dceed3c54ef14df41f123c9ae/astsearch-0.1.3-py3-none-any.whl Collecting influxdb (from -r requirements.txt (line 8)) Downloading https://files.pythonhosted.org/packages/b7/eb/ff503c3195c2bfcf53be1deca10396e9e7b55096ccb51ee94aef54434f33/influxdb-5.2.2-py2.py3-none-any.whl (70kB) Collecting tabulate (from -r requirements.txt (line 9)) Downloading https://files.pythonhosted.org/packages/c2/fd/202954b3f0eb896c53b7b6f07390851b1fd2ca84aa95880d7ae4f434c4ac/tabulate-0.8.3.tar.gz (46kB) Collecting h5py (from -r requirements.txt (line 10)) Downloading https://files.pythonhosted.org/packages/9c/fb/16dfe209a415c700577e41d16b46ca3514f920b96ebeed2895d01bf97316/h5py-2.9.0-cp34-cp34m-manylinux1_x86_64.whl (2.8MB) Collecting unittest-xml-reporting (from -r requirements.txt (line 11)) Downloading https://files.pythonhosted.org/packages/7a/84/43c100dcbb042255ed1105c63a700b0310b48b71b01e939ad5c95f1d512e/unittest_xml_reporting-2.5.1-py2.py3-none-any.whl Collecting zmq (from -r requirements.txt (line 12)) Downloading https://files.pythonhosted.org/packages/6e/78/833b2808793c1619835edb1a4e17a023d5d625f4f97ff25ffff986d1f472/zmq-0.0.0.tar.gz Collecting lxml (from -r requirements.txt (line 13)) Downloading https://files.pythonhosted.org/packages/4c/7e/0ec2410210c1be8e96ff490d2bff5cc78228668e81cb284c30a563d0d90e/lxml-4.3.4-cp34-cp34m-manylinux1_x86_64.whl (5.6MB) Collecting gitpython (from -r requirements.txt (line 14)) Downloading https://files.pythonhosted.org/packages/fe/e5/fafe827507644c32d6dc553a1c435cdf882e0c28918a5bab29f7fbebfb70/GitPython-2.1.11-py2.py3-none-any.whl (448kB) Collecting karabo_data (from -r requirements.txt (line 15)) Downloading https://files.pythonhosted.org/packages/30/8b/98d8f9427e939bf95987963b36f7beb9055a96c8eb3656f21720c436d124/karabo_data-0.3.0-py3-none-any.whl (95kB) Collecting sklearn (from -r requirements.txt (line 16)) Downloading https://files.pythonhosted.org/packages/1e/7a/dbb3be0ce9bd5c8b7e3d87328e79063f8b263b2b1bfa4774cb1147bfcd3f/sklearn-0.0.tar.gz Collecting prettytable (from -r requirements.txt (line 17)) Downloading https://files.pythonhosted.org/packages/ef/30/4b0746848746ed5941f052479e7c23d2b56d174b82f4fd34a25e389831f5/prettytable-0.7.2.tar.bz2 Requirement already satisfied: jupyter in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from -r requirements.txt (line 18)) Requirement already satisfied: jupyter_console in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from -r requirements.txt (line 19)) Collecting sphinx==1.4.5 (from -r requirements.txt (line 20)) Using cached https://files.pythonhosted.org/packages/d1/ad/9fe56e099e0bd288f1fdc037c2146b0698e2cba1d9a48636660f39a0e791/Sphinx-1.4.5-py2.py3-none-any.whl Requirement already satisfied: numpy>=1.8.2 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from fabio->-r requirements.txt (line 3)) Requirement already satisfied: setuptools in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from fabio->-r requirements.txt (line 3)) Requirement already satisfied: wheel>=0.25.0 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from pypandoc->-r requirements.txt (line 4)) Requirement already satisfied: pip>=8.1.0 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from pypandoc->-r requirements.txt (line 4)) Requirement already satisfied: jinja2 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from nbconvert->-r requirements.txt (line 5)) Requirement already satisfied: traitlets>=4.2 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from nbconvert->-r requirements.txt (line 5)) Requirement already satisfied: mistune>=0.8.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from nbconvert->-r requirements.txt (line 5)) Requirement already satisfied: nbformat>=4.4 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from nbconvert->-r requirements.txt (line 5)) 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satisfied: pygments in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from nbconvert->-r requirements.txt (line 5)) Requirement already satisfied: python-dateutil>=2.6.0 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from influxdb->-r requirements.txt (line 8)) Requirement already satisfied: six>=1.10.0 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from influxdb->-r requirements.txt (line 8)) Requirement already satisfied: pytz in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from influxdb->-r requirements.txt (line 8)) Requirement already satisfied: requests>=2.17.0 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from influxdb->-r requirements.txt (line 8)) Requirement already satisfied: pyzmq in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from zmq->-r requirements.txt (line 12)) Collecting gitdb2>=2.0.0 (from gitpython->-r requirements.txt (line 14)) Downloading https://files.pythonhosted.org/packages/da/30/a407568aa8d8f25db817cf50121a958722f3fc5f87e3a6fba1f40c0633e3/gitdb2-2.0.5-py2.py3-none-any.whl (62kB) Collecting xarray (from karabo_data->-r requirements.txt (line 15)) Downloading https://files.pythonhosted.org/packages/d2/40/e3d9a6b679a7b4ba80e8cdf0b0226809ef454773f7b79ef1b2bd1898bd48/xarray-0.10.9-py2.py3-none-any.whl (473kB) Collecting karabo-bridge (from karabo_data->-r requirements.txt (line 15)) Downloading https://files.pythonhosted.org/packages/da/d3/5f1707e0a4f73675bf99e9f898829b19066c715727b6850949ed7c7621bb/karabo_bridge-0.3.0.tar.gz Collecting msgpack>=0.5.4 (from karabo_data->-r requirements.txt (line 15)) Downloading https://files.pythonhosted.org/packages/81/9c/0036c66234482044070836cc622266839e2412f8108849ab0bfdeaab8578/msgpack-0.6.1.tar.gz (118kB) Requirement already satisfied: scipy in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from karabo_data->-r requirements.txt (line 15)) Requirement already satisfied: matplotlib in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from karabo_data->-r requirements.txt (line 15)) Collecting msgpack-numpy>=0.4.3 (from karabo_data->-r requirements.txt (line 15)) Downloading https://files.pythonhosted.org/packages/c8/ab/09904a909bccc471f219fb8f5d0838cbcb10cc26089a2b29e84c893e216e/msgpack_numpy-0.4.4.3-py2.py3-none-any.whl Collecting future (from karabo_data->-r requirements.txt (line 15)) Downloading https://files.pythonhosted.org/packages/90/52/e20466b85000a181e1e144fd8305caf2cf475e2f9674e797b222f8105f5f/future-0.17.1.tar.gz (829kB) Requirement already satisfied: pandas<0.21; python_version < "3.5" in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from karabo_data->-r requirements.txt (line 15)) Collecting cfelpyutils (from karabo_data->-r requirements.txt (line 15)) Downloading https://files.pythonhosted.org/packages/f9/44/de93dd549813647593c1b623949b9d378365b8911f392649564d257fdf40/cfelpyutils-0.92.tar.gz Collecting scikit-learn (from sklearn->-r requirements.txt (line 16)) Downloading https://files.pythonhosted.org/packages/f2/e6/3d6a5977db28bf643a89137925a7c9f2f5dae364e2bf4885d9a87b3e14e9/scikit_learn-0.20.3-cp34-cp34m-manylinux1_x86_64.whl (5.3MB) Requirement already satisfied: ipykernel in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from jupyter->-r requirements.txt (line 18)) Requirement already satisfied: notebook in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from jupyter->-r requirements.txt (line 18)) Requirement already satisfied: qtconsole in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from jupyter->-r requirements.txt (line 18)) Requirement already satisfied: ipywidgets in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from jupyter->-r 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/user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from requests>=2.17.0->influxdb->-r requirements.txt (line 8)) Collecting smmap2>=2.0.0 (from gitdb2>=2.0.0->gitpython->-r requirements.txt (line 14)) Downloading https://files.pythonhosted.org/packages/55/d2/866d45e3a121ee15a1dc013824d58072fd5c7799c9c34d01378eb262ca8f/smmap2-2.0.5-py2.py3-none-any.whl Requirement already satisfied: cycler>=0.10 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from matplotlib->karabo_data->-r requirements.txt (line 15)) Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from matplotlib->karabo_data->-r requirements.txt (line 15)) Requirement already satisfied: kiwisolver>=1.0.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from matplotlib->karabo_data->-r requirements.txt (line 15)) Requirement already satisfied: tornado>=4.2 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from ipykernel->jupyter->-r requirements.txt (line 18)) Requirement already satisfied: terminado>=0.8.1 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from notebook->jupyter->-r requirements.txt (line 18)) Requirement already satisfied: Send2Trash in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from notebook->jupyter->-r requirements.txt (line 18)) Requirement already satisfied: prometheus-client in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from notebook->jupyter->-r requirements.txt (line 18)) Requirement already satisfied: widgetsnbextension~=3.4.0 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from ipywidgets->jupyter->-r requirements.txt (line 18)) Requirement already satisfied: backcall in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from ipython->jupyter_console->-r requirements.txt (line 19)) Requirement already satisfied: simplegeneric>0.8 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from ipython->jupyter_console->-r requirements.txt (line 19)) Requirement already satisfied: pexpect; sys_platform != "win32" in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from ipython->jupyter_console->-r requirements.txt (line 19)) Requirement already satisfied: pickleshare in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from ipython->jupyter_console->-r requirements.txt (line 19)) Requirement already satisfied: typing; python_version <= "3.4" in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from ipython->jupyter_console->-r requirements.txt (line 19)) Requirement already satisfied: jedi>=0.10 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from ipython->jupyter_console->-r requirements.txt (line 19)) Requirement already satisfied: wcwidth in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from prompt-toolkit<2.0.0,>=1.0.0->jupyter_console->-r requirements.txt (line 19)) Requirement already satisfied: pyrsistent>=0.14.0 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.4->nbconvert->-r requirements.txt (line 5)) Requirement already satisfied: attrs>=17.4.0 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.4->nbconvert->-r requirements.txt (line 5)) Requirement already satisfied: backports-abc>=0.4 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from tornado>=4.2->ipykernel->jupyter->-r requirements.txt (line 18)) Requirement already satisfied: ptyprocess; os_name != "nt" in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from terminado>=0.8.1->notebook->jupyter->-r requirements.txt (line 18)) Requirement already satisfied: parso>=0.3.0 in /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages (from jedi>=0.10->ipython->jupyter_console->-r requirements.txt (line 19)) Building wheels for collected packages: tabulate, zmq, sklearn, prettytable, karabo-bridge, msgpack, future, cfelpyutils Running setup.py bdist_wheel for tabulate: started Running setup.py bdist_wheel for tabulate: finished with status 'done' Stored in directory: /user_builds/pydetlib-test2/.cache/pip/wheels/2b/67/89/414471314a2d15de625d184d8be6d38a03ae1e983dbda91e84 Running setup.py bdist_wheel for zmq: started Running setup.py bdist_wheel for zmq: finished with status 'done' Stored in directory: /user_builds/pydetlib-test2/.cache/pip/wheels/44/7a/7d/ac1d865766b06f9769ac1154bf31dbb5abb3b52ecfe278247a Running setup.py bdist_wheel for sklearn: started Running setup.py bdist_wheel for sklearn: finished with status 'done' Stored in directory: /user_builds/pydetlib-test2/.cache/pip/wheels/76/03/bb/589d421d27431bcd2c6da284d5f2286c8e3b2ea3cf1594c074 Running setup.py bdist_wheel for prettytable: started Running setup.py bdist_wheel for prettytable: finished with status 'done' Stored in directory: /user_builds/pydetlib-test2/.cache/pip/wheels/80/34/1c/3967380d9676d162cb59513bd9dc862d0584e045a162095606 Running setup.py bdist_wheel for karabo-bridge: started Running setup.py bdist_wheel for karabo-bridge: finished with status 'done' Stored in directory: /user_builds/pydetlib-test2/.cache/pip/wheels/d9/79/1c/8674778c00513a686ca0ac4510703f15ab23dd51ca0c520e00 Running setup.py bdist_wheel for msgpack: started Running setup.py bdist_wheel for msgpack: finished with status 'done' Stored in directory: /user_builds/pydetlib-test2/.cache/pip/wheels/e0/eb/73/79c4057260fcb51c5f12cee027dda5cf79b92b618a82529c74 Running setup.py bdist_wheel for future: started Running setup.py bdist_wheel for future: finished with status 'done' Stored in directory: /user_builds/pydetlib-test2/.cache/pip/wheels/0c/61/d2/d6b7317325828fbb39ee6ad559dbe4664d0896da4721bf379e Running setup.py bdist_wheel for cfelpyutils: started Running setup.py bdist_wheel for cfelpyutils: finished with status 'done' Stored in directory: /user_builds/pydetlib-test2/.cache/pip/wheels/82/10/fa/7bebb185f481c61174eadfb06d61bdc294a5b7b6591a94fb51 Successfully built tabulate zmq sklearn prettytable karabo-bridge msgpack future cfelpyutils Installing collected packages: fabio, astcheck, astsearch, influxdb, tabulate, h5py, unittest-xml-reporting, zmq, lxml, smmap2, gitdb2, gitpython, xarray, msgpack, msgpack-numpy, karabo-bridge, future, cfelpyutils, karabo-data, scikit-learn, sklearn, prettytable, sphinx, nbparameterise, iCalibrationDB, calTools, European-XFEL-Offline-Calibration Found existing installation: Sphinx 1.3.5 Uninstalling Sphinx-1.3.5: Successfully uninstalled Sphinx-1.3.5 Running setup.py install for nbparameterise: started Running setup.py install for nbparameterise: finished with status 'done' Running setup.py install for iCalibrationDB: started Running setup.py install for iCalibrationDB: finished with status 'done' Running setup.py install for calTools: started Running setup.py install for calTools: finished with status 'done' Running setup.py install for European-XFEL-Offline-Calibration: started Running setup.py install for European-XFEL-Offline-Calibration: finished with status 'done' Successfully installed European-XFEL-Offline-Calibration-1.0 astcheck-0.2.5 astsearch-0.1.3 calTools-0.1 cfelpyutils-0.92 fabio-0.9.0 future-0.17.1 gitdb2-2.0.5 gitpython-2.1.11 h5py-2.9.0 iCalibrationDB-0.1 influxdb-5.2.2 karabo-bridge-0.3.0 karabo-data-0.3.0 lxml-4.3.4 msgpack-0.6.1 msgpack-numpy-0.4.4.3 nbparameterise-1.0xfel prettytable-0.7.2 scikit-learn-0.20.3 sklearn-0.0 smmap2-2.0.5 sphinx-1.4.5 tabulate-0.8.3 unittest-xml-reporting-2.5.1 xarray-0.10.9 zmq-0.0.0 You are using pip version 9.0.1, however version 19.1.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2019-07-18T06:51:34.099000Z, end-time: 2019-07-18T06:51:37.909000Z, duration: 3, exit-code: 0 python setup.py install --force running install running build running build_py creating build creating build/lib creating build/lib/cal_tools copying cal_tools/cal_tools/__init__.py -> build/lib/cal_tools copying cal_tools/cal_tools/agipdlib.py -> build/lib/cal_tools copying cal_tools/cal_tools/ana_tools.py -> build/lib/cal_tools copying cal_tools/cal_tools/enums.py -> build/lib/cal_tools copying cal_tools/cal_tools/influx.py -> build/lib/cal_tools copying cal_tools/cal_tools/lpdlib.py -> build/lib/cal_tools copying cal_tools/cal_tools/metrology.py -> build/lib/cal_tools copying cal_tools/cal_tools/plotting.py -> build/lib/cal_tools copying cal_tools/cal_tools/tools.py -> build/lib/cal_tools creating build/lib/xfel_calibrate copying xfel_calibrate/__init__.py -> build/lib/xfel_calibrate copying xfel_calibrate/automode.py -> build/lib/xfel_calibrate copying xfel_calibrate/calibrate.py -> build/lib/xfel_calibrate copying xfel_calibrate/check_proc_files.py -> build/lib/xfel_calibrate copying xfel_calibrate/notebooks.py -> build/lib/xfel_calibrate copying xfel_calibrate/settings.py -> build/lib/xfel_calibrate creating build/lib/xfel_calibrate/bin copying xfel_calibrate/bin/automode.sh -> build/lib/xfel_calibrate/bin copying xfel_calibrate/bin/cal_influx_feeder.sh -> build/lib/xfel_calibrate/bin copying xfel_calibrate/bin/slurm_calibrate.sh -> build/lib/xfel_calibrate/bin creating build/lib/xfel_calibrate/notebooks creating build/lib/xfel_calibrate/notebooks/Jungfrau copying xfel_calibrate/notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb -> build/lib/xfel_calibrate/notebooks/Jungfrau copying xfel_calibrate/notebooks/Jungfrau/Jungfrau_dark_analysis_all_gains_NBC.ipynb -> build/lib/xfel_calibrate/notebooks/Jungfrau creating build/lib/xfel_calibrate/notebooks/DSSC copying xfel_calibrate/notebooks/DSSC/DSSC_Correct_and_Verify.ipynb -> build/lib/xfel_calibrate/notebooks/DSSC copying xfel_calibrate/notebooks/DSSC/Characterize_DSSC_Darks_NBC.ipynb -> build/lib/xfel_calibrate/notebooks/DSSC creating build/lib/xfel_calibrate/notebooks/FastCCD copying xfel_calibrate/notebooks/FastCCD/CorrectionNotebook_NewDAQ_FastCCD_NBC.ipynb -> build/lib/xfel_calibrate/notebooks/FastCCD copying xfel_calibrate/notebooks/FastCCD/Characterize_Darks_NewDAQ_FastCCD_NBC.ipynb -> build/lib/xfel_calibrate/notebooks/FastCCD creating build/lib/xfel_calibrate/notebooks/Tutorial copying xfel_calibrate/notebooks/Tutorial/calversion.ipynb -> build/lib/xfel_calibrate/notebooks/Tutorial creating build/lib/xfel_calibrate/notebooks/pnCCD copying xfel_calibrate/notebooks/pnCCD/Correct_pnCCD_NBC.ipynb -> build/lib/xfel_calibrate/notebooks/pnCCD copying xfel_calibrate/notebooks/pnCCD/Characterize_pnCCD_Dark_NBC.ipynb -> build/lib/xfel_calibrate/notebooks/pnCCD creating build/lib/xfel_calibrate/notebooks/LPD copying xfel_calibrate/notebooks/LPD/Characterize_LPD_GAIN_CI_per_pixel_NBC.ipynb -> build/lib/xfel_calibrate/notebooks/LPD copying xfel_calibrate/notebooks/LPD/PlotFromCalDB.ipynb -> build/lib/xfel_calibrate/notebooks/LPD copying xfel_calibrate/notebooks/LPD/LPD_Correct_and_Verify.ipynb -> build/lib/xfel_calibrate/notebooks/LPD copying xfel_calibrate/notebooks/LPD/Mine_RadIntensity_vs_XGM_NBC.ipynb -> build/lib/xfel_calibrate/notebooks/LPD copying xfel_calibrate/notebooks/LPD/LPDChar_Darks_NBC.ipynb -> build/lib/xfel_calibrate/notebooks/LPD copying xfel_calibrate/notebooks/LPD/LPD_FlatField_Radial_per_pixel_CI_NBC.ipynb -> build/lib/xfel_calibrate/notebooks/LPD creating build/lib/xfel_calibrate/notebooks/generic copying xfel_calibrate/notebooks/generic/DB_Constants_to_HDF5_NBC.ipynb -> build/lib/xfel_calibrate/notebooks/generic creating build/lib/xfel_calibrate/notebooks/ePix copying xfel_calibrate/notebooks/ePix/Correction_ePix_NBC.ipynb -> build/lib/xfel_calibrate/notebooks/ePix copying xfel_calibrate/notebooks/ePix/Characterize_Darks_ePix_NBC.ipynb -> build/lib/xfel_calibrate/notebooks/ePix creating build/lib/xfel_calibrate/notebooks/AGIPD copying xfel_calibrate/notebooks/AGIPD/AGIPD_Correct_and_Verify.ipynb -> build/lib/xfel_calibrate/notebooks/AGIPD copying xfel_calibrate/notebooks/AGIPD/AGIPD_Characterize_Gain_Combine_NBC.ipynb -> build/lib/xfel_calibrate/notebooks/AGIPD copying xfel_calibrate/notebooks/AGIPD/Chracterize_AGIPD_Gain_PC_NBC.ipynb -> build/lib/xfel_calibrate/notebooks/AGIPD copying xfel_calibrate/notebooks/AGIPD/Characterize_AGIPD_Gain_Darks_NBC.ipynb -> build/lib/xfel_calibrate/notebooks/AGIPD copying xfel_calibrate/notebooks/AGIPD/Characterize_AGIPD_Gain_FlatFields_NBC.ipynb -> build/lib/xfel_calibrate/notebooks/AGIPD running install_lib copying build/lib/cal_tools/__init__.py -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/cal_tools copying build/lib/cal_tools/agipdlib.py -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/cal_tools copying build/lib/cal_tools/ana_tools.py -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/cal_tools copying build/lib/cal_tools/enums.py -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/cal_tools copying build/lib/cal_tools/influx.py -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/cal_tools copying build/lib/cal_tools/lpdlib.py -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/cal_tools copying build/lib/cal_tools/metrology.py -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/cal_tools copying build/lib/cal_tools/plotting.py -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/cal_tools copying build/lib/cal_tools/tools.py -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/cal_tools copying build/lib/xfel_calibrate/__init__.py -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate copying build/lib/xfel_calibrate/automode.py -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate copying build/lib/xfel_calibrate/calibrate.py -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate copying build/lib/xfel_calibrate/check_proc_files.py -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate copying build/lib/xfel_calibrate/notebooks.py -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate copying build/lib/xfel_calibrate/settings.py -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate copying build/lib/xfel_calibrate/bin/automode.sh -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/bin copying build/lib/xfel_calibrate/bin/cal_influx_feeder.sh -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/bin copying build/lib/xfel_calibrate/bin/slurm_calibrate.sh -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/bin copying build/lib/xfel_calibrate/notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/Jungfrau copying build/lib/xfel_calibrate/notebooks/Jungfrau/Jungfrau_dark_analysis_all_gains_NBC.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/Jungfrau copying build/lib/xfel_calibrate/notebooks/DSSC/DSSC_Correct_and_Verify.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/DSSC copying build/lib/xfel_calibrate/notebooks/DSSC/Characterize_DSSC_Darks_NBC.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/DSSC copying build/lib/xfel_calibrate/notebooks/FastCCD/CorrectionNotebook_NewDAQ_FastCCD_NBC.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/FastCCD copying build/lib/xfel_calibrate/notebooks/FastCCD/Characterize_Darks_NewDAQ_FastCCD_NBC.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/FastCCD copying build/lib/xfel_calibrate/notebooks/Tutorial/calversion.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/Tutorial copying build/lib/xfel_calibrate/notebooks/pnCCD/Correct_pnCCD_NBC.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/pnCCD copying build/lib/xfel_calibrate/notebooks/pnCCD/Characterize_pnCCD_Dark_NBC.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/pnCCD copying build/lib/xfel_calibrate/notebooks/LPD/Characterize_LPD_GAIN_CI_per_pixel_NBC.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/LPD copying build/lib/xfel_calibrate/notebooks/LPD/PlotFromCalDB.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/LPD copying build/lib/xfel_calibrate/notebooks/LPD/LPD_Correct_and_Verify.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/LPD copying build/lib/xfel_calibrate/notebooks/LPD/Mine_RadIntensity_vs_XGM_NBC.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/LPD copying build/lib/xfel_calibrate/notebooks/LPD/LPDChar_Darks_NBC.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/LPD copying build/lib/xfel_calibrate/notebooks/LPD/LPD_FlatField_Radial_per_pixel_CI_NBC.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/LPD copying build/lib/xfel_calibrate/notebooks/generic/DB_Constants_to_HDF5_NBC.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/generic copying build/lib/xfel_calibrate/notebooks/ePix/Correction_ePix_NBC.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/ePix copying build/lib/xfel_calibrate/notebooks/ePix/Characterize_Darks_ePix_NBC.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/ePix copying build/lib/xfel_calibrate/notebooks/AGIPD/AGIPD_Correct_and_Verify.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/AGIPD copying build/lib/xfel_calibrate/notebooks/AGIPD/AGIPD_Characterize_Gain_Combine_NBC.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/AGIPD copying build/lib/xfel_calibrate/notebooks/AGIPD/Chracterize_AGIPD_Gain_PC_NBC.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/AGIPD copying build/lib/xfel_calibrate/notebooks/AGIPD/Characterize_AGIPD_Gain_Darks_NBC.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/AGIPD copying build/lib/xfel_calibrate/notebooks/AGIPD/Characterize_AGIPD_Gain_FlatFields_NBC.ipynb -> /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks/AGIPD byte-compiling /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/cal_tools/__init__.py to __init__.cpython-34.pyc byte-compiling /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/cal_tools/agipdlib.py to agipdlib.cpython-34.pyc byte-compiling /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/cal_tools/ana_tools.py to ana_tools.cpython-34.pyc byte-compiling /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/cal_tools/enums.py to enums.cpython-34.pyc byte-compiling /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/cal_tools/influx.py to influx.cpython-34.pyc byte-compiling /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/cal_tools/lpdlib.py to lpdlib.cpython-34.pyc byte-compiling /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/cal_tools/metrology.py to metrology.cpython-34.pyc byte-compiling /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/cal_tools/plotting.py to plotting.cpython-34.pyc byte-compiling /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/cal_tools/tools.py to tools.cpython-34.pyc byte-compiling /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/__init__.py to __init__.cpython-34.pyc byte-compiling /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/automode.py to automode.cpython-34.pyc byte-compiling /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/calibrate.py to calibrate.cpython-34.pyc byte-compiling /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/check_proc_files.py to check_proc_files.cpython-34.pyc byte-compiling /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/notebooks.py to notebooks.cpython-34.pyc byte-compiling /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/xfel_calibrate/settings.py to settings.cpython-34.pyc running install_egg_info running egg_info creating European_XFEL_Offline_Calibration.egg-info writing entry points to European_XFEL_Offline_Calibration.egg-info/entry_points.txt writing dependency_links to European_XFEL_Offline_Calibration.egg-info/dependency_links.txt writing top-level names to European_XFEL_Offline_Calibration.egg-info/top_level.txt writing European_XFEL_Offline_Calibration.egg-info/PKG-INFO writing manifest file 'European_XFEL_Offline_Calibration.egg-info/SOURCES.txt' reading manifest file 'European_XFEL_Offline_Calibration.egg-info/SOURCES.txt' writing manifest file 'European_XFEL_Offline_Calibration.egg-info/SOURCES.txt' removing '/user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/European_XFEL_Offline_Calibration-1.0-py3.4.egg-info' (and everything under it) Copying European_XFEL_Offline_Calibration.egg-info to /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/European_XFEL_Offline_Calibration-1.0-py3.4.egg-info running install_scripts Installing xfel-calibrate script to /user_builds/pydetlib-test2/envs/latest/bin Python environment seems to not be a Karabo environment. Please install PyDetLib manually. [rtd-command-info] start-time: 2019-07-18T06:51:38.296000Z, end-time: 2019-07-18T06:51:38.352000Z, duration: 0, exit-code: 0 cat conf.py #!/usr/bin/env python3 # -*- coding: utf-8 -*- # # European XFEL Offline Calibration documentation build configuration file, created by # sphinx-quickstart on Sun Jun 10 17:32:30 2018. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # # import os # import sys # sys.path.insert(0, os.path.abspath('.')) # -- General configuration ------------------------------------------------ # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.autodoc', 'sphinx.ext.intersphinx', 'sphinx.ext.todo', 'sphinx.ext.mathjax', 'sphinx.ext.ifconfig', 'sphinx.ext.viewcode', ] import glob import sys import os from subprocess import Popen sys.path.append(os.path.abspath("../pycalibration/")) p = Popen(["./makeAllDocs.sh"]) p.communicate() # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = 'European XFEL Offline Calibration' copyright = '2018, The European XFEL Detector Group' author = 'The European XFEL Detector Group' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. version = '1.0' # The full version, including alpha/beta/rc tags. release = '1.0' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = [] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = True # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # # html_theme = '' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. # # html_theme_options = {} # Add any paths that contain custom themes here, relative to this directory. # html_theme_path = [] # The name for this set of Sphinx documents. # " v documentation" by default. # # html_title = 'European XFEL Offline Calibration v1.0' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # # html_logo = None # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # # html_favicon = None # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the documentation. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # # html_show_sourcelink = True # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # # html_show_sphinx = True # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # # html_use_opensearch = '' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'h', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'r', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'EuropeanXFELOfflineCalibrationdoc' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', 'extraclassoptions': 'openany, oneside', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'EuropeanXFELOfflineCalibration.tex', 'European XFEL Offline Calibration Documentation', 'The European XFEL Detector Group', 'manual', True), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'europeanxfelofflinecalibration', 'European XFEL Offline Calibration Documentation', [author], 1) ] # If true, show URL addresses after external links. # # man_show_urls = False # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'EuropeanXFELOfflineCalibration', 'European XFEL Offline Calibration Documentation', author, 'EuropeanXFELOfflineCalibration', 'One line description of project.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'https://docs.python.org/': None} # first install pandoc if necessary, this is mainly meant for the RTD builds try: from nbconvert.utils.pandoc import check_pandoc_version check_pandoc_version() print("Pandoc was found!") except: print("Installing Pandoc!") from subprocess import check_call pandoc_url = "https://github.com/jgm/pandoc/releases/download/2.2.1/pandoc-2.2.1-1-amd64.deb" pandoc_pack = "pandoc-2.2.1-1-amd64.deb" check_call(["wget", pandoc_url]) check_call(["dpkg", "-i", pandoc_pack]) # generate the list of available notebooks from xfel_calibrate import notebooks from subprocess import check_output from textwrap import dedent, indent from nbconvert import RSTExporter import os import nbformat rst_exporter = RSTExporter() with open("available_notebooks.rst", "w") as f: f.write(dedent(""" .. _available_notebooks: Available Notebooks =================== The following notebooks are currently integrated into the European XFEL Offline Calibration tool chain. """)) for detector in sorted(notebooks.notebooks.keys()): values = notebooks.notebooks[detector] f.write("{}\n".format(detector)) f.write("{}\n".format("-"*len(detector))) f.write("\n") for caltype in sorted(values.keys()): data = values[caltype] nbpath = os.path.abspath("{}/../../../{}".format(__file__, data["notebook"])) with open(nbpath, "r") as nf: nb = nbformat.read(nf, as_version=4) def first_markdown_cell(nb): for cell in nb.cells: if cell.cell_type == 'markdown': return cell mdcell = first_markdown_cell(nb) nb.cells = [mdcell] # we only want this single cell body, _ = rst_exporter.from_notebook_node(nb) adjusted = [] # adjust titles for line in body.split("\n"): if line.startswith("=="): line = line.replace("=", "+") if line.startswith("--"): line = line.replace("-", "~") adjusted.append(line) f.write("\n".join(adjusted)) f.write("\n") f.write("To invoke this notebook and display help use:\n\n") f.write(".. code-block:: bash\n\n") f.write(" xfel-calibrate {} {} --help\n\n".format(detector, caltype)) f.write("The full parameter list of this notebook (with defaults is): \n\n") f.write(".. code-block:: bash\n\n") nb_help = ["xfel-calibrate", detector, caltype, "--help"] output = check_output(nb_help).decode('utf8') f.write(indent(output.replace("DETECTOR", detector).replace("TYPE", caltype), " "*4)) f.write("\n\n") # add test results test_artefact_dir = os.path.realpath("../../tests/artefacts") from datetime import datetime from dateutil.parser import parse from lxml import etree import shutil import tabulate import textwrap from uuid import uuid4 def xml_to_rst_report(xml, git_tag, reports=[]): e = etree.fromstring(xml.encode()) rst = [""] rst += ["Test execution for {test_name} on {ex_date}"] test_name, ex_date = e.get("name").split("-") ex_date = parse(ex_date) rst[-1] = rst[-1].format(test_name=test_name, ex_date=ex_date) rst += ["="*len(rst[-1])] rst += [""] num_tests = e.get("tests") num_err = int(e.get("errors")) num_fail = int(e.get("failures")) num_skip = int(e.get("skipped")) # create a summary header if num_err + num_fail == 0: rst += [":header-passed:`✓`"] else: rst += [":header-failed:`❌`"] if num_skip > 0: rst[-1] += ":header-skipped:`⚠`" rst += [""] # give a summary rst += [":Git tag: {git_tag}".format(git_tag=git_tag)] rst += [":Tests: {num_tests}".format(num_tests=num_tests)] rst += [":Errors: {num_err}".format(num_err=num_err)] rst += [":Failures: {num_fail}".format(num_fail=num_fail)] rst += [":Skipped: {num_skip}".format(num_skip=num_skip)] rst += [":Duration: {duration}s".format(duration=e.get("time"))] for rname, rpath in reports: rst += [":Report: `{} <{}>`_".format(rname, rpath)] rst += [""] # now the details rst += ["Detailed Results"] rst += ["-"*len(rst[-1])] rst += [""] detailed_failures = [] rows = [] for child in e: if child.tag != "testcase": continue name = child.get("name") extime = child.get("time") status = ":passed:`passed`" msg = "" etype = "" if len(child): # children are pressent so test failed or skipped detail = child[0] etype = detail.get("type") msg = detail.get("message") if etype == "skip": status = ":skipped:`skipped`" else: status= ":failed:`failed`" detailed_failures.append((name, detail.text)) msg = "\n".join(textwrap.wrap(msg, 20)) row = [status, name, etype, msg, extime ] rows.append(row) header = ["Result", "Test", "Error", "Message", "Duration (s)"] tblrst = tabulate.tabulate(rows, headers=header, tablefmt="rst") rst += tblrst.split("\n") rst += [""] for test, report in detailed_failures: rst += ["Failure report for: {}".format(test)] rst += ["~"*len(rst[-1])] rst += [""] rst += [".. code-block:: python"] rst += textwrap.indent(report, " "*4).split("\n") rst += [""] do_console = False for child in e: if child.tag == "system-out" and len(child.text.strip()): do_console = True break if do_console: # console output rst += ["Console Output"] rst += ["-"*len(rst[-1])] rst += [""] for child in e: if child.tag != "system-out": continue rst += [".. code-block:: console"] rst += textwrap.indent(child.text, " "*4).split("\n") return "\n".join(rst) def sorted_dir(folder): def getmtime(name): path = os.path.join(folder, name) return os.path.getmtime(path) sort = sorted(os.listdir(folder), key=getmtime, reverse=True) return [(s, datetime.fromtimestamp(getmtime(s))) for s in sort] header = """ Test Results ++++++++++++ Results are organized by git commit, and sorted descending by date. Contents: .. toctree:: :maxdepth: 2 """ if not os.path.exists("./test_rsts"): os.makedirs("./test_rsts") with open("test_results.rst", "w") as f: f.write(header) for commit, modtime in sorted_dir(test_artefact_dir): with open("./test_rsts/{}.rst".format(commit), "w") as fr: rst = [".. include:: roles.rst"] rst += [""] rst += ["{} - {}".format(commit[:8], modtime)] rst += ["+"*len(rst[-1])] rst += [""] fr.write("\n".join(rst)) # copy reports pdfs = glob.glob("{}/{}/*/*.pdf".format(test_artefact_dir, commit)) if not os.path.exists("./_static/reports/{}".format(commit)): os.makedirs("./_static/reports/{}".format(commit)) reports = {} for pdf in pdfs: ppath = "{}/{}.pdf".format(commit, uuid4()) shutil.copyfile(pdf, "./_static/reports/{}".format(ppath)) rloc = pdf.split("/")[-2] rlist = reports.get(rloc, []) rname = os.path.basename(pdf).split(".")[0] rlist.append((rname, "../_static/reports/{}".format(ppath))) reports[rloc] = rlist xmls = glob.glob("{}/{}/*/TEST*.xml".format(test_artefact_dir, commit)) for xml in xmls: rloc = xml.split("/")[-2] with open(xml, "r") as xf: xs = xf.read() rst = xml_to_rst_report(xs, commit, reports=reports.get(rloc, [])) fr.write(rst) f.write(" test_rsts/{}\n".format(commit)) def setup(app): app.add_stylesheet('css/test_decorators.css') ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix else: SUFFIX = source_suffix[0] else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') html_static_path.append('/rtd_root/readthedocs/templates/sphinx/_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = False if 'html_theme' in globals(): if html_theme in ['default']: # Allow people to bail with a hack of having an html_style if not 'html_style' in globals(): import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True else: import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.org/websupport' if 'http' not in settings.MEDIA_URL: websupport2_static_url = '/static/' else: websupport2_static_url = '/media//static' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'MEDIA_URL': "/media/", 'PRODUCTION_DOMAIN': "exflrtd.desy.de", 'versions': [ ("latest", "/en/latest/"), ], 'downloads': [ ("pdf", "//exflrtd.desy.de/projects/pydetlib-test2/downloads/pdf/latest/"), ("htmlzip", "//exflrtd.desy.de/projects/pydetlib-test2/downloads/htmlzip/latest/"), ("epub", "//exflrtd.desy.de/projects/pydetlib-test2/downloads/epub/latest/"), ], 'subprojects': [ ], 'slug': 'pydetlib-test2', 'name': u'offline calibration test', 'rtd_language': u'en', 'canonical_url': 'http://exflrtd.desy.de/docs/pydetlib-test2/en/latest/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/docs/source/', 'api_host': 'https://readthedocs.org', 'github_user': 'None', 'github_repo': 'None', 'github_version': 'doc/anaconda_installation', 'display_github': False, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'doc/anaconda_installation', 'display_bitbucket': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-1', 'commit': '2472a9ce', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): extensions.append("readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] [rtd-command-info] start-time: 2019-07-18T06:51:38.433000Z, end-time: 2019-07-18T06:54:16.727000Z, duration: 158, exit-code: 0 python /user_builds/pydetlib-test2/envs/latest/bin/sphinx-build -T -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.4.5 making output directory... [NbConvertApp] Converting notebook ../../../notebooks/Tutorial/calversion.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Writing 4428 bytes to ./calversion.rst Pandoc was found! loading translations [en]... done loading pickled environment... not yet created loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/ -> https://docs.python.org/3 building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 14 source files that are out of date updating environment: 14 added, 0 changed, 0 removed reading sources... [ 7%] _notebooks/calversion reading sources... [ 14%] _notebooks/index reading sources... [ 21%] advanced reading sources... [ 28%] available_notebooks reading sources... [ 35%] configuration reading sources... [ 42%] how_it_works reading sources... [ 50%] index reading sources... [ 57%] installation reading sources... [ 64%] test_results reading sources... [ 71%] test_rsts/ca3b513c64c05a29ae0f530c91b04349417c4fa0 reading sources... [ 78%] test_rsts/roles reading sources... [ 85%] testing reading sources... [ 92%] tutorial reading sources... [100%] workflow /user_builds/pydetlib-test2/checkouts/latest/docs/source/conf.py:368: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/checkouts/latest/docs/source/advanced.rst:116: WARNING: Literal block expected; none found. /user_builds/pydetlib-test2/checkouts/latest/docs/source/how_it_works.rst:6: ERROR: Unknown target name: "nbconvert". looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 7%] _notebooks/calversion writing output... [ 14%] _notebooks/index writing output... [ 21%] advanced writing output... [ 28%] available_notebooks /user_builds/pydetlib-test2/checkouts/latest/docs/source/available_notebooks.rst:314: WARNING: Could not lex literal_block as "bash". Highlighting skipped. /user_builds/pydetlib-test2/checkouts/latest/docs/source/available_notebooks.rst:779: WARNING: Could not lex literal_block as "bash". Highlighting skipped. writing output... [ 35%] configuration writing output... [ 42%] how_it_works writing output... [ 50%] index writing output... [ 57%] installation writing output... [ 64%] test_results writing output... [ 71%] test_rsts/ca3b513c64c05a29ae0f530c91b04349417c4fa0 writing output... [ 78%] test_rsts/roles writing output... [ 85%] testing writing output... [ 92%] tutorial writing output... [100%] workflow generating indices... genindex writing additional pages... search copying static files... WARNING: html_static_path entry '/rtd_root/readthedocs/templates/sphinx/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 5 warnings. Copying readthedocs-dynamic-include.js_t... done Copying readthedocs-data.js_t... done Copying searchtools.js_t... done [rtd-command-info] start-time: 2019-07-18T06:54:24.392000Z, end-time: 2019-07-18T06:56:27.053000Z, duration: 122, exit-code: 0 python /user_builds/pydetlib-test2/envs/latest/bin/sphinx-build -T -b json -d _build/doctrees-json -D language=en . _build/json Running Sphinx v1.4.5 making output directory... mkdir: cannot create directory ‘_notebooks’: File exists [NbConvertApp] Converting notebook ../../../notebooks/Tutorial/calversion.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Writing 4428 bytes to ./calversion.rst Pandoc was found! loading translations [en]... done loading pickled environment... not yet created loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/ -> https://docs.python.org/3 building [mo]: targets for 0 po files that are out of date building [json]: targets for 14 source files that are out of date updating environment: 14 added, 0 changed, 0 removed reading sources... [ 7%] _notebooks/calversion reading sources... [ 14%] _notebooks/index reading sources... [ 21%] advanced reading sources... [ 28%] available_notebooks reading sources... [ 35%] configuration reading sources... [ 42%] how_it_works reading sources... [ 50%] index reading sources... [ 57%] installation reading sources... [ 64%] test_results reading sources... [ 71%] test_rsts/ca3b513c64c05a29ae0f530c91b04349417c4fa0 reading sources... [ 78%] test_rsts/roles reading sources... [ 85%] testing reading sources... [ 92%] tutorial reading sources... [100%] workflow /user_builds/pydetlib-test2/checkouts/latest/docs/source/conf.py:368: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/checkouts/latest/docs/source/advanced.rst:116: WARNING: Literal block expected; none found. /user_builds/pydetlib-test2/checkouts/latest/docs/source/how_it_works.rst:6: ERROR: Unknown target name: "nbconvert". looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 7%] _notebooks/calversion writing output... [ 14%] _notebooks/index writing output... [ 21%] advanced writing output... [ 28%] available_notebooks /user_builds/pydetlib-test2/checkouts/latest/docs/source/available_notebooks.rst:314: WARNING: Could not lex literal_block as "bash". Highlighting skipped. /user_builds/pydetlib-test2/checkouts/latest/docs/source/available_notebooks.rst:779: WARNING: Could not lex literal_block as "bash". Highlighting skipped. writing output... [ 35%] configuration writing output... [ 42%] how_it_works writing output... [ 50%] index writing output... [ 57%] installation writing output... [ 64%] test_results writing output... [ 71%] test_rsts/ca3b513c64c05a29ae0f530c91b04349417c4fa0 writing output... [ 78%] test_rsts/roles writing output... [ 85%] testing writing output... [ 92%] tutorial writing output... [100%] workflow generating indices... genindex writing additional pages... search copying static files... WARNING: html_static_path entry '/rtd_root/readthedocs/templates/sphinx/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 5 warnings. [rtd-command-info] start-time: 2019-07-18T06:56:30.626000Z, end-time: 2019-07-18T06:58:33.944000Z, duration: 123, exit-code: 0 python /user_builds/pydetlib-test2/envs/latest/bin/sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.4.5 making output directory... mkdir: cannot create directory ‘_notebooks’: File exists [NbConvertApp] Converting notebook ../../../notebooks/Tutorial/calversion.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Writing 4428 bytes to ./calversion.rst Pandoc was found! loading translations [en]... done loading pickled environment... not yet created loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/ -> https://docs.python.org/3 building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 14 added, 0 changed, 0 removed reading sources... [ 7%] _notebooks/calversion reading sources... [ 14%] _notebooks/index reading sources... [ 21%] advanced reading sources... [ 28%] available_notebooks reading sources... [ 35%] configuration reading sources... [ 42%] how_it_works reading sources... [ 50%] index reading sources... [ 57%] installation reading sources... [ 64%] test_results reading sources... [ 71%] test_rsts/ca3b513c64c05a29ae0f530c91b04349417c4fa0 reading sources... [ 78%] test_rsts/roles reading sources... [ 85%] testing reading sources... [ 92%] tutorial reading sources... [100%] workflow /user_builds/pydetlib-test2/checkouts/latest/docs/source/conf.py:368: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/checkouts/latest/docs/source/advanced.rst:116: WARNING: Literal block expected; none found. /user_builds/pydetlib-test2/checkouts/latest/docs/source/how_it_works.rst:6: ERROR: Unknown target name: "nbconvert". looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... how_it_works installation configuration workflow available_notebooks advanced tutorial _notebooks/index _notebooks/calversion testing test_rsts/ca3b513c64c05a29ae0f530c91b04349417c4fa0 writing... /user_builds/pydetlib-test2/checkouts/latest/docs/source/index.rst:314: WARNING: Could not lex literal_block as "bash". Highlighting skipped. /user_builds/pydetlib-test2/checkouts/latest/docs/source/index.rst:779: WARNING: Could not lex literal_block as "bash". Highlighting skipped. done writing additional files... copying static files... WARNING: html_static_path entry '/rtd_root/readthedocs/templates/sphinx/_static' does not exist done copying extra files... done dumping object inventory... done build succeeded, 5 warnings. [rtd-command-info] start-time: 2019-07-18T06:58:34.580000Z, end-time: 2019-07-18T07:00:30.025000Z, duration: 115, exit-code: 0 python /user_builds/pydetlib-test2/envs/latest/bin/sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.4.5 making output directory... mkdir: cannot create directory ‘_notebooks’: File exists [NbConvertApp] Converting notebook ../../../notebooks/Tutorial/calversion.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Writing 4428 bytes to ./calversion.rst Pandoc was found! loading translations [en]... done loading pickled environment... not yet created loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/ -> https://docs.python.org/3 building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 14 added, 0 changed, 0 removed reading sources... [ 7%] _notebooks/calversion reading sources... [ 14%] _notebooks/index reading sources... [ 21%] advanced reading sources... [ 28%] available_notebooks reading sources... [ 35%] configuration reading sources... [ 42%] how_it_works reading sources... [ 50%] index reading sources... [ 57%] installation reading sources... [ 64%] test_results reading sources... [ 71%] test_rsts/ca3b513c64c05a29ae0f530c91b04349417c4fa0 reading sources... [ 78%] test_rsts/roles reading sources... [ 85%] testing reading sources... [ 92%] tutorial reading sources... [100%] workflow /user_builds/pydetlib-test2/checkouts/latest/docs/source/conf.py:368: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/checkouts/latest/docs/source/advanced.rst:116: WARNING: Literal block expected; none found. /user_builds/pydetlib-test2/checkouts/latest/docs/source/how_it_works.rst:6: ERROR: Unknown target name: "nbconvert". looking for now-outdated files... none found pickling environment... done checking consistency... done processing EuropeanXFELOfflineCalibration.tex... index how_it_works installation configuration workflow available_notebooks advanced tutorial _notebooks/index _notebooks/calversion testing test_rsts/ca3b513c64c05a29ae0f530c91b04349417c4fa0 resolving references... writing... /user_builds/pydetlib-test2/checkouts/latest/docs/source/workflow.rst:: WARNING: unusable reference target found: tcp://host:port /user_builds/pydetlib-test2/checkouts/latest/docs/source/available_notebooks.rst:314: WARNING: Could not lex literal_block as "bash". 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Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 3386. [55] [56] [57] [58] Chapter 7. Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 3661. [59] [60] Chapter 8. Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 3787. [61] [62] [63] Chapter 9. Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 3967. [64] [65] [66] No file EuropeanXFELOfflineCalibration.ind. [67] (./EuropeanXFELOfflineCalibration.aux) Package rerunfilecheck Warning: File `EuropeanXFELOfflineCalibration.out' has c hanged. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on EuropeanXFELOfflineCalibration.pdf (69 pages, 306664 bytes). Transcript written on EuropeanXFELOfflineCalibration.log. [rtd-command-info] start-time: 2019-07-18T07:00:32.035000Z, end-time: 2019-07-18T07:00:32.123000Z, duration: 0, exit-code: 0 makeindex -s python.ist EuropeanXFELOfflineCalibration.idx This is makeindex, version 2.15 [TeX Live 2015/dev] (kpathsea + Thai support). Scanning style file ./python.ist......done (6 attributes redefined, 0 ignored). Scanning input file EuropeanXFELOfflineCalibration.idx...done (0 entries accepted, 0 rejected). Nothing written in EuropeanXFELOfflineCalibration.ind. Transcript written in EuropeanXFELOfflineCalibration.ilg. [rtd-command-info] start-time: 2019-07-18T07:00:32.185000Z, end-time: 2019-07-18T07:00:34.061000Z, duration: 1, exit-code: 0 pdflatex -interaction=nonstopmode /user_builds/pydetlib-test2/checkouts/latest/docs/source/_build/latex/EuropeanXFELOfflineCalibration.tex This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (/user_builds/pydetlib-test2/checkouts/latest/docs/source/_build/latex/European XFELOfflineCalibration.tex LaTeX2e <2014/05/01> Babel <3.9l> and hyphenation patterns for 2 languages loaded. 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Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 3386. [55] [56] [57] [58] Chapter 7. Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 3661. [59] [60] Chapter 8. Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 3787. [61] [62] [63] Chapter 9. Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 3967. [64] [65] [66] (./EuropeanXFELOfflineCalibration.ind) [67] (./EuropeanXFELOfflineCalibration.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on EuropeanXFELOfflineCalibration.pdf (70 pages, 317125 bytes). Transcript written on EuropeanXFELOfflineCalibration.log. [rtd-command-info] start-time: 2019-07-18T07:00:34.137000Z, end-time: 2019-07-18T07:00:34.186000Z, duration: 0, exit-code: 0 mv -f /user_builds/pydetlib-test2/checkouts/latest/docs/source/_build/latex/EuropeanXFELOfflineCalibration.pdf /user_builds/pydetlib-test2/artifacts/latest/sphinx_pdf/pydetlib-test2.pdf [rtd-command-info] start-time: 2019-07-18T07:00:34.489000Z, end-time: 2019-07-18T07:02:29.118000Z, duration: 114, exit-code: 0 python /user_builds/pydetlib-test2/envs/latest/bin/sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.4.5 making output directory... mkdir: cannot create directory ‘_notebooks’: File exists [NbConvertApp] Converting notebook ../../../notebooks/Tutorial/calversion.ipynb to rst /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() [NbConvertApp] Writing 4428 bytes to ./calversion.rst Pandoc was found! loading translations [en]... done loading pickled environment... not yet created loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/ -> https://docs.python.org/3 building [mo]: targets for 0 po files that are out of date building [epub]: targets for 14 source files that are out of date updating environment: 14 added, 0 changed, 0 removed reading sources... [ 7%] _notebooks/calversion reading sources... 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Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/envs/latest/lib/python3.4/site-packages/nbconvert/utils/pandoc.py:52: RuntimeWarning: You are using an unsupported version of pandoc (2.2.1). Your version must be at least (1.12.1) but less than (2.0.0). Refer to http://pandoc.org/installing.html. Continuing with doubts... check_pandoc_version() /user_builds/pydetlib-test2/checkouts/latest/docs/source/advanced.rst:116: WARNING: Literal block expected; none found. /user_builds/pydetlib-test2/checkouts/latest/docs/source/how_it_works.rst:6: ERROR: Unknown target name: "nbconvert". looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 7%] _notebooks/calversion writing output... [ 14%] _notebooks/index writing output... [ 21%] advanced writing output... [ 28%] available_notebooks /user_builds/pydetlib-test2/checkouts/latest/docs/source/available_notebooks.rst:314: WARNING: Could not lex literal_block as "bash". Highlighting skipped. /user_builds/pydetlib-test2/checkouts/latest/docs/source/available_notebooks.rst:779: WARNING: Could not lex literal_block as "bash". Highlighting skipped. writing output... [ 35%] configuration writing output... [ 42%] how_it_works writing output... [ 50%] index writing output... [ 57%] installation writing output... [ 64%] test_results writing output... [ 71%] test_rsts/ca3b513c64c05a29ae0f530c91b04349417c4fa0 writing output... [ 78%] test_rsts/roles writing output... [ 85%] testing writing output... [ 92%] tutorial writing output... [100%] workflow generating indices... genindex writing additional pages... search copying static files... WARNING: html_static_path entry '/rtd_root/readthedocs/templates/sphinx/_static' does not exist done copying extra files... done writing mimetype file... writing META-INF/container.xml file... writing content.opf file... WARNING: unknown mimetype for _static/reports/ca3b513c64c05a29ae0f530c91b04349417c4fa0/8a7e1915-dac7-4aa7-a191-eb1589039c5c.pdf, ignoring WARNING: unknown mimetype for _static/reports/ca3b513c64c05a29ae0f530c91b04349417c4fa0/a6e0b765-8ed3-47f0-bb6b-69a5cff439dc.pdf, ignoring WARNING: unknown mimetype for _static/reports/ca3b513c64c05a29ae0f530c91b04349417c4fa0/75868ac7-ec6e-4634-8459-df87c69fc5af.pdf, ignoring WARNING: unknown mimetype for _static/reports/ca3b513c64c05a29ae0f530c91b04349417c4fa0/6329da35-981c-42b9-a5d2-004cf7a479b1.pdf, ignoring WARNING: unknown mimetype for _static/reports/ca3b513c64c05a29ae0f530c91b04349417c4fa0/6113fc51-8ea7-4f5e-bed6-10920432c941.pdf, ignoring WARNING: unknown mimetype for _static/reports/ca3b513c64c05a29ae0f530c91b04349417c4fa0/46772161-73e3-4557-8079-2aa5fe3e15a9.pdf, ignoring WARNING: unknown mimetype for _static/reports/ca3b513c64c05a29ae0f530c91b04349417c4fa0/e5d042c9-46c7-4ef1-8dcb-23868e4a6879.pdf, ignoring WARNING: unknown mimetype for _static/reports/ca3b513c64c05a29ae0f530c91b04349417c4fa0/d74a0e3a-5902-42c6-9cd5-2d178acac125.pdf, ignoring WARNING: unknown mimetype for _static/reports/ca3b513c64c05a29ae0f530c91b04349417c4fa0/b680fc41-ae1b-49d5-b497-d9cdd9f21364.pdf, ignoring WARNING: unknown mimetype for _static/reports/ca3b513c64c05a29ae0f530c91b04349417c4fa0/8870b0c1-9c82-4384-b877-aa4c70819aaf.pdf, ignoring writing toc.ncx file... writing EuropeanXFELOfflineCalibration.epub file... build succeeded, 15 warnings. [rtd-command-info] start-time: 2019-07-18T07:02:29.187000Z, end-time: 2019-07-18T07:02:29.227000Z, duration: 0, exit-code: 0 mv -f /user_builds/pydetlib-test2/checkouts/latest/docs/source/_build/epub/EuropeanXFELOfflineCalibration.epub /user_builds/pydetlib-test2/artifacts/latest/sphinx_epub/pydetlib-test2.epub