Read the Docs build information Build id: 13074 Project: karabofai Version: latest Commit: 3603db9a9a98590a3b34c37903e10128d9b9afee Date: 2019-10-30T09:46:13.868023Z State: finished Success: True [rtd-command-info] start-time: 2019-10-30T14:46:36.131000Z, end-time: 2019-10-30T14:46:47.863000Z, duration: 11, exit-code: 0 python3 -mvirtualenv --no-site-packages --no-download /user_builds/karabofai/envs/latest Using base prefix '/usr' New python executable in /user_builds/karabofai/envs/latest/bin/python3 Not overwriting existing python script /user_builds/karabofai/envs/latest/bin/python (you must use /user_builds/karabofai/envs/latest/bin/python3) Installing setuptools, pip, wheel...done. [rtd-command-info] start-time: 2019-10-30T14:46:47.924000Z, end-time: 2019-10-30T14:47:04.765000Z, duration: 16, exit-code: 0 python /user_builds/karabofai/envs/latest/bin/pip install --use-wheel -U --cache-dir /user_builds/karabofai/.cache/pip sphinx==1.3.5 Pygments==2.1.3 setuptools==20.1.1 docutils==0.12 mkdocs==0.15.0 mock==1.0.1 pillow==2.6.1 git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext sphinx-rtd-theme==0.1.9 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.5.4 recommonmark==0.1.1 Requirement already up-to-date: sphinx==1.3.5 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: Pygments==2.1.3 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages Collecting setuptools==20.1.1 Using cached https://files.pythonhosted.org/packages/e8/82/3b5455f74bf9ac0757d09c625b7741e6fc284d7519cffc3babb6c5173cf5/setuptools-20.1.1-py2.py3-none-any.whl Requirement already up-to-date: docutils==0.12 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: mkdocs==0.15.0 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: mock==1.0.1 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: pillow==2.6.1 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages Collecting readthedocs-sphinx-ext from git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext Cloning https://github.com/rtfd/readthedocs-sphinx-ext.git (to 0.6-alpha) to /tmp/pip-build-2ruhee0a/readthedocs-sphinx-ext Requirement already up-to-date: sphinx-rtd-theme==0.1.9 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: alabaster!=0.7.5,<0.8,>=0.7 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: commonmark==0.5.4 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: recommonmark==0.1.1 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: snowballstemmer>=1.1 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: six>=1.4 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: Jinja2>=2.3 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: babel!=2.0,>=1.3 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: livereload>=2.3.2 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: PyYAML>=3.10 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: mkdocs-bootswatch>=0.1.0 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: click>=4.0 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: mkdocs-bootstrap>=0.1.1 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: tornado>=4.1 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: Markdown>=2.3.1 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: requests in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages (from readthedocs-sphinx-ext) Requirement already up-to-date: nilsimsa>=0.3.7 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages (from readthedocs-sphinx-ext) Requirement already up-to-date: MarkupSafe>=0.23 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages (from Jinja2>=2.3->sphinx==1.3.5) Requirement already up-to-date: pytz>=2015.7 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages (from babel!=2.0,>=1.3->sphinx==1.3.5) Requirement already up-to-date: backports-abc>=0.4 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages (from tornado>=4.1->mkdocs==0.15.0) Requirement already up-to-date: chardet<3.1.0,>=3.0.2 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: certifi>=2017.4.17 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: urllib3<1.25,>=1.21.1 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: idna<2.9,>=2.5 in /user_builds/karabofai/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Installing collected packages: setuptools, readthedocs-sphinx-ext Found existing installation: setuptools 28.8.0 Uninstalling setuptools-28.8.0: Successfully uninstalled setuptools-28.8.0 Found existing installation: readthedocs-sphinx-ext 0.5.4 Uninstalling readthedocs-sphinx-ext-0.5.4: Successfully uninstalled readthedocs-sphinx-ext-0.5.4 Running setup.py install for readthedocs-sphinx-ext: started Running setup.py install for readthedocs-sphinx-ext: finished with status 'done' Successfully installed readthedocs-sphinx-ext-0.5.4 setuptools-20.1.1 You are using pip version 9.0.1, however version 19.3.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2019-10-30T14:47:04.831000Z, end-time: 2019-10-30T14:47:07.341000Z, duration: 2, exit-code: 0 python /user_builds/karabofai/envs/latest/bin/pip install --exists-action=w --cache-dir /user_builds/karabofai/.cache/pip -rdocs/requirements.txt You must give at least one requirement to install (see "pip help install") You are using pip version 9.0.1, however version 19.3.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2019-10-30T14:47:08.089000Z, end-time: 2019-10-30T14:47:08.110000Z, duration: 0, exit-code: 0 cat conf.py #!/usr/bin/env python3 # -*- coding: utf-8 -*- # # karaboFAI documentation build configuration file, created by # sphinx-quickstart on Tue Dec 4 10:57:15 2018. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # # import os # import sys # sys.path.insert(0, os.path.abspath('.')) # -- General configuration ------------------------------------------------ # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.autodoc', 'sphinx.ext.mathjax', 'sphinx.ext.viewcode' ] # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The master toctree document. master_doc = 'index' # General information about the project. project = 'karaboFAI' copyright = '2018 (C), European X-Ray Free-Electron Laser Facility GmbH' author = 'Jun Zhu' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. version = '0.6.1' # The full version, including alpha/beta/rc tags. release = version # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # html_theme = 'default' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. # # html_theme_options = {} # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] # Custom sidebar templates, must be a dictionary that maps document names # to template names. # # This is required for the alabaster theme # refs: http://alabaster.readthedocs.io/en/latest/installation.html#sidebars html_sidebars = { '**': [ 'relations.html', # needs 'show_related': True theme option to display 'searchbox.html', ] } # -- Options for HTMLHelp output ------------------------------------------ # Output file base name for HTML help builder. htmlhelp_basename = 'karaboFAIdoc' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'karaboFAI.tex', 'karaboFAI Documentation', 'Jun Zhu', 'manual'), ] # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'karaboFAI', 'karaboFAI Documentation', [author], 1) ] # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'karaboFAI', 'karaboFAI Documentation', author, 'karaboFAI', 'One line description of project.', 'Miscellaneous'), ] ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix else: SUFFIX = source_suffix[0] else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') html_static_path.append('/rtd_root/readthedocs/templates/sphinx/_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = False if 'html_theme' in globals(): if html_theme in ['default']: # Allow people to bail with a hack of having an html_style if not 'html_style' in globals(): import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True else: import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.org/websupport' if 'http' not in settings.MEDIA_URL: websupport2_static_url = '/static/' else: websupport2_static_url = '/media//static' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'MEDIA_URL': "/media/", 'PRODUCTION_DOMAIN': "exflrtd.desy.de", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ("documentation", "/en/documentation/"), ], 'downloads': [ ("pdf", "//exflrtd.desy.de/projects/karabofai/downloads/pdf/latest/"), ("htmlzip", "//exflrtd.desy.de/projects/karabofai/downloads/htmlzip/latest/"), ("epub", "//exflrtd.desy.de/projects/karabofai/downloads/epub/latest/"), ], 'subprojects': [ ], 'slug': 'karabofai', 'name': u'karaboFAI', 'rtd_language': u'en', 'canonical_url': 'http://exflrtd.desy.de/docs/karabofai/en/latest/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.org', 'github_user': 'None', 'github_repo': 'None', 'github_version': 'dev', 'display_github': False, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'dev', 'display_bitbucket': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-1', 'commit': '3603db9a', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): extensions.append("readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] [rtd-command-info] start-time: 2019-10-30T14:47:08.508000Z, end-time: 2019-10-30T14:47:16.464000Z, duration: 7, exit-code: 0 python /user_builds/karabofai/envs/latest/bin/sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.3.5 making output directory... loading translations [en]... done building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 9 source files that are out of date updating environment: 9 added, 0 changed, 0 removed reading sources... [ 11%] changelog reading sources... [ 22%] developer reading sources... [ 33%] gui reading sources... [ 44%] index reading sources... [ 55%] installation reading sources... [ 66%] introduction reading sources... [ 77%] start reading sources... [ 88%] tutorial_data_flow reading sources... [100%] windows looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 11%] changelog writing output... [ 22%] developer writing output... [ 33%] gui writing output... [ 44%] index writing output... [ 55%] installation writing output... [ 66%] introduction writing output... [ 77%] start writing output... [ 88%] tutorial_data_flow writing output... [100%] windows generating indices... genindex writing additional pages... search copying images... [ 10%] images/file_stream_control.png copying images... [ 20%] images/data_source_from_file.png copying images... [ 30%] images/karaboFAI_data_flow.png copying images... [ 40%] images/data_source_from_bridge.png copying images... [ 50%] images/dark-run_window.png copying images... [ 60%] images/pyFAI_PONI.png copying images... [ 70%] images/MainGUI.png copying images... [ 80%] images/pump-probe_window.png copying images... [ 90%] images/ImageTool.png copying images... [100%] images/1D_binning_window.png copying static files... WARNING: html_static_path entry '/rtd_root/readthedocs/templates/sphinx/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 1 warning. Copying readthedocs-dynamic-include.js_t... done Copying readthedocs-data.js_t... done Copying searchtools.js_t... done [rtd-command-info] start-time: 2019-10-30T14:47:20.412000Z, end-time: 2019-10-30T14:47:25.529000Z, duration: 5, exit-code: 0 python /user_builds/karabofai/envs/latest/bin/sphinx-build -T -b json -d _build/doctrees-json -D language=en . _build/json Running Sphinx v1.3.5 making output directory... loading translations [en]... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [json]: targets for 9 source files that are out of date updating environment: 0 added, 0 changed, 0 removed looking for now-outdated files... none found preparing documents... done writing output... [ 11%] changelog writing output... [ 22%] developer writing output... [ 33%] gui writing output... [ 44%] index writing output... [ 55%] installation writing output... [ 66%] introduction writing output... [ 77%] start writing output... [ 88%] tutorial_data_flow writing output... [100%] windows generating indices... genindex writing additional pages... search copying images... [ 10%] images/file_stream_control.png copying images... [ 20%] images/dark-run_window.png copying images... [ 30%] images/MainGUI.png copying images... [ 40%] images/pump-probe_window.png copying images... [ 50%] images/data_source_from_bridge.png copying images... [ 60%] images/pyFAI_PONI.png copying images... [ 70%] images/karaboFAI_data_flow.png copying images... [ 80%] images/ImageTool.png copying images... [ 90%] images/data_source_from_file.png copying images... [100%] images/1D_binning_window.png copying static files... WARNING: html_static_path entry '/rtd_root/readthedocs/templates/sphinx/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 1 warning. [rtd-command-info] start-time: 2019-10-30T14:47:26.953000Z, end-time: 2019-10-30T14:47:32.267000Z, duration: 5, exit-code: 0 python /user_builds/karabofai/envs/latest/bin/sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.3.5 making output directory... loading translations [en]... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 0 added, 0 changed, 0 removed looking for now-outdated files... none found preparing documents... done assembling single document... introduction installation start gui windows tutorial_data_flow developer changelog writing... done writing additional files... copying images... [ 10%] images/pyFAI_PONI.png copying images... [ 20%] images/pump-probe_window.png copying images... [ 30%] images/MainGUI.png copying images... [ 40%] images/data_source_from_bridge.png copying images... [ 50%] images/data_source_from_file.png copying images... [ 60%] images/file_stream_control.png copying images... [ 70%] images/ImageTool.png copying images... [ 80%] images/dark-run_window.png copying images... [ 90%] images/karaboFAI_data_flow.png copying images... [100%] images/1D_binning_window.png copying static files... WARNING: html_static_path entry '/rtd_root/readthedocs/templates/sphinx/_static' does not exist done copying extra files... done dumping object inventory... done build succeeded, 1 warning. [rtd-command-info] start-time: 2019-10-30T14:47:32.924000Z, end-time: 2019-10-30T14:47:37.287000Z, duration: 4, exit-code: 0 python /user_builds/karabofai/envs/latest/bin/sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.3.5 making output directory... loading translations [en]... done loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 0 added, 0 changed, 0 removed looking for now-outdated files... none found processing karaboFAI.tex... index introduction installation start gui windows tutorial_data_flow developer changelog resolving references... writing... done copying images... images/pump-probe_window.png images/data_source_from_bridge.png images/karaboFAI_data_flow.png images/pyFAI_PONI.png images/data_source_from_file.png images/dark-run_window.png images/1D_binning_window.png images/ImageTool.png images/file_stream_control.png images/MainGUI.png copying TeX support files... done build succeeded. [rtd-command-info] start-time: 2019-10-30T14:47:37.346000Z, end-time: 2019-10-30T14:47:39.659000Z, duration: 2, exit-code: 0 pdflatex -interaction=nonstopmode /user_builds/karabofai/checkouts/latest/docs/_build/latex/karaboFAI.tex This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (/user_builds/karabofai/checkouts/latest/docs/_build/latex/karaboFAI.tex LaTeX2e <2014/05/01> Babel <3.9l> and hyphenation patterns for 2 languages loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2009/06/02 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./fncychap.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/fancybox/fancybox.sty Style option: `fancybox' v1.4 <2010/05/15> (tvz) ) (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty) (./tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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[3] [4 <./MainGUI.png>] <1D_binning_window.png, id=60, 783.92876pt x 573.14125pt> [5 <./ImageTool.png>] [6 <./pump-probe_window.png>] [7 <./1D_binning_window.png>] [8] Chapter 2. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [9] [10] Chapter 3. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [11] [12 <./data_source_ from_bridge.png>] Underfull \hbox (badness 7504) in paragraph at lines 337--344 \T1/ptm/m/n/10 be streamed from the run folder. If the run folder has path stru c-ture as on \T1/ptm/m/it/10 Maxwell GPFS [13 <./file_str eam_control.png> <./data_source_from_file.png>] [14] [15] [16] Chapter 4. [17] [18] LaTeX Warning: Hyper reference `gui:analysistype' on page 19 undefined on input line 736. Overfull \hbox (1.71796pt too wide) in paragraph at lines 695--764 [][] [19] Overfull \hbox (1.71796pt too wide) in paragraph at lines 874--912 [] [20 <./pyFAI_PONI.png>] LaTeX Warning: Hyper reference `gui:analysistype' on page 21 undefined on input line 938. LaTeX Warning: Hyper reference `gui:analysistype' on page 21 undefined on input line 938. LaTeX Warning: Hyper reference `gui:analysistype' on page 21 undefined on input line 968. LaTeX Warning: Hyper reference `gui:analysistype' on page 21 undefined on input line 968. LaTeX Warning: Hyper reference `gui:analysistype' on page 21 undefined on input line 974. LaTeX Warning: Hyper reference `gui:analysistype' on page 21 undefined on input line 986. Overfull \hbox (1.71796pt too wide) in paragraph at lines 976--1032 [][] LaTeX Warning: Hyper reference `gui:analysistype' on page 21 undefined on input line 1076. [21] LaTeX Warning: Hyper reference `gui:analysistype' on page 22 undefined on input line 1076. [22] Chapter 5. [23] [24] LaTeX Warning: Hyper reference `windows:imagefileformat' on page 25 undefined o n input line 1246. LaTeX Warning: Hyper reference `windows:imagefileformat' on page 25 undefined o n input line 1246. LaTeX Warning: Hyper reference `windows:imagefileformat' on page 25 undefined o n input line 1246. LaTeX Warning: Hyper reference `windows:imagefileformat' on page 25 undefined o n input line 1246. [25] [26] [27 <./dark-run_win dow.png>] [28] Chapter 6. [29 <./karaboFAI_da ta_flow.png>] [30] Chapter 7. [31] [32] Chapter 8. [33] [34] [35] [36] Chapter 9. No file karaboFAI.ind. [37] (./karaboFAI.aux) Package rerunfilecheck Warning: File `karaboFAI.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb> Output written on karaboFAI.pdf (41 pages, 1565747 bytes). Transcript written on karaboFAI.log. [rtd-command-info] start-time: 2019-10-30T14:47:39.734000Z, end-time: 2019-10-30T14:47:39.790000Z, duration: 0, exit-code: 0 makeindex -s python.ist karaboFAI.idx This is makeindex, version 2.15 [TeX Live 2015/dev] (kpathsea + Thai support). Scanning style file ./python.ist......done (6 attributes redefined, 0 ignored). Scanning input file karaboFAI.idx...done (0 entries accepted, 0 rejected). Nothing written in karaboFAI.ind. Transcript written in karaboFAI.ilg. [rtd-command-info] start-time: 2019-10-30T14:47:39.848000Z, end-time: 2019-10-30T14:47:42.584000Z, duration: 2, exit-code: 0 pdflatex -interaction=nonstopmode /user_builds/karabofai/checkouts/latest/docs/_build/latex/karaboFAI.tex This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (/user_builds/karabofai/checkouts/latest/docs/_build/latex/karaboFAI.tex LaTeX2e <2014/05/01> Babel <3.9l> and hyphenation patterns for 2 languages loaded. 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(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (/usr/share/texlive/texmf-dist/tex/latex/caption/newfloat.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (/usr/share/texlive/texmf-dist/tex/latex/multirow/multirow.sty) (/usr/share/texlive/texmf-dist/tex/latex/eqparbox/eqparbox.sty (/usr/share/texlive/texmf-dist/tex/latex/environ/environ.sty (/usr/share/texlive/texmf-dist/tex/latex/trimspaces/trimspaces.sty))) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty) Writing index file karaboFAI.idx (./karaboFAI.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./karaboFAI.out) (./karaboFAI.out) Underfull \hbox (badness 10000) in paragraph at lines 134--134 (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./karaboFAI.toc [1]) [2] [1] [2] Chapter 1. [3] [4 <./MainGUI.png>] <1D_binning_window.png, id=307, 783.92876pt x 573.14125pt> [5 <./ImageTool.png>] [6 <./pump-probe_window.png>] [7 <./1D_binning_window.png>] [8] Chapter 2. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [9] [10] Chapter 3. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [11] [12 <./data_source_ from_bridge.png>] Underfull \hbox (badness 7504) in paragraph at lines 337--344 \T1/ptm/m/n/10 be streamed from the run folder. If the run folder has path stru c-ture as on \T1/ptm/m/it/10 Maxwell GPFS [13 <./file_str eam_control.png> <./data_source_from_file.png>] [14] [15] [16] Chapter 4. [17] [18] Overfull \hbox (1.71796pt too wide) in paragraph at lines 695--764 [][] [19] Overfull \hbox (1.71796pt too wide) in paragraph at lines 874--912 [] [20 <./pyFAI_PONI.png>] Overfull \hbox (1.71796pt too wide) in paragraph at lines 976--1032 [][] [21] [22] Chapter 5. [23] [24] [25] [26] [27 <./dark-run_window.png>] [28] Chapter 6. [29 <./karaboFAI_da ta_flow.png>] [30] Chapter 7. [31] [32] Chapter 8. [33] [34] [35] [36] Chapter 9. (./karaboFAI.ind) [37] (./karaboFAI.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb> Output written on karaboFAI.pdf (41 pages, 1583645 bytes). Transcript written on karaboFAI.log. 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