Read the Docs build information Build id: 18884 Project: extra-hed Version: latest Commit: 14db0786f0bf79feec43e550b61f29550e280221 Date: 2020-08-29T03:41:49.940364Z State: finished Success: True [rtd-command-info] start-time: 2020-08-29T08:41:54.116000Z, end-time: 2020-08-29T08:42:06.148000Z, duration: 12, exit-code: 0 python3 -mvirtualenv --no-site-packages --no-download /user_builds/extra-hed/envs/latest Using base prefix '/usr' New python executable in /user_builds/extra-hed/envs/latest/bin/python3 Not overwriting existing python script /user_builds/extra-hed/envs/latest/bin/python (you must use /user_builds/extra-hed/envs/latest/bin/python3) Installing setuptools, pip, wheel...done. [rtd-command-info] start-time: 2020-08-29T08:42:06.217000Z, end-time: 2020-08-29T08:42:40.271000Z, duration: 34, exit-code: 0 python /user_builds/extra-hed/envs/latest/bin/pip install --use-wheel -U --cache-dir /user_builds/extra-hed/.cache/pip sphinx==1.3.5 Pygments==2.1.3 setuptools==20.1.1 docutils==0.12 mkdocs==0.15.0 PyYAML==5.2 mock==1.0.1 pillow==2.6.1 git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext sphinx-rtd-theme==0.1.9 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.5.4 recommonmark==0.1.1 Collecting sphinx==1.3.5 Using cached https://files.pythonhosted.org/packages/ff/91/45883bc962bda1be7e78039b41cc15e1eb3327ec75679eedd067b5d07bd5/Sphinx-1.3.5-py2.py3-none-any.whl Requirement already up-to-date: Pygments==2.1.3 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages Collecting setuptools==20.1.1 Using cached https://files.pythonhosted.org/packages/e8/82/3b5455f74bf9ac0757d09c625b7741e6fc284d7519cffc3babb6c5173cf5/setuptools-20.1.1-py2.py3-none-any.whl Requirement already up-to-date: docutils==0.12 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: mkdocs==0.15.0 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: PyYAML==5.2 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: mock==1.0.1 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: pillow==2.6.1 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages Collecting readthedocs-sphinx-ext from git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext Cloning https://github.com/rtfd/readthedocs-sphinx-ext.git (to 0.6-alpha) to /tmp/pip-build-2av_pqx_/readthedocs-sphinx-ext Requirement already up-to-date: sphinx-rtd-theme==0.1.9 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: alabaster!=0.7.5,<0.8,>=0.7 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: commonmark==0.5.4 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: recommonmark==0.1.1 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: snowballstemmer>=1.1 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: six>=1.4 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: Jinja2>=2.3 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: babel!=2.0,>=1.3 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: tornado>=4.1 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: Markdown>=2.3.1 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: mkdocs-bootstrap>=0.1.1 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: click>=4.0 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: mkdocs-bootswatch>=0.1.0 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: livereload>=2.3.2 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: requests in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from readthedocs-sphinx-ext) Requirement already up-to-date: nilsimsa>=0.3.7 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from readthedocs-sphinx-ext) Requirement already up-to-date: MarkupSafe>=0.23 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from Jinja2>=2.3->sphinx==1.3.5) Requirement already up-to-date: pytz>=2015.7 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from babel!=2.0,>=1.3->sphinx==1.3.5) Requirement already up-to-date: backports-abc>=0.4 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from tornado>=4.1->mkdocs==0.15.0) Requirement already up-to-date: certifi>=2017.4.17 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: urllib3<1.25,>=1.21.1 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: idna<2.9,>=2.5 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: chardet<3.1.0,>=3.0.2 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Installing collected packages: sphinx, setuptools, readthedocs-sphinx-ext Found existing installation: Sphinx 1.8.5 Uninstalling Sphinx-1.8.5: Successfully uninstalled Sphinx-1.8.5 Found existing installation: setuptools 28.8.0 Uninstalling setuptools-28.8.0: Successfully uninstalled setuptools-28.8.0 Found existing installation: readthedocs-sphinx-ext 0.5.4 Uninstalling readthedocs-sphinx-ext-0.5.4: Successfully uninstalled readthedocs-sphinx-ext-0.5.4 Running setup.py install for readthedocs-sphinx-ext: started Running setup.py install for readthedocs-sphinx-ext: finished with status 'done' Successfully installed readthedocs-sphinx-ext-0.5.4 setuptools-20.1.1 sphinx-1.3.5 You are using pip version 9.0.1, however version 20.2.2 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2020-08-29T08:42:40.575000Z, end-time: 2020-08-29T08:43:06.332000Z, duration: 25, exit-code: 0 python /user_builds/extra-hed/envs/latest/bin/pip install --exists-action=w --cache-dir /user_builds/extra-hed/.cache/pip -r/user_builds/extra-hed/checkouts/latest/docs/requirements.txt Collecting git+https://git.xfel.eu/gitlab/xfel-rtd/rtd-conf.git (from -r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 6)) Cloning https://git.xfel.eu/gitlab/xfel-rtd/rtd-conf.git to /tmp/pip-g3o3wi0d-build Requirement already satisfied (use --upgrade to upgrade): RTDConf==0.1 from git+https://git.xfel.eu/gitlab/xfel-rtd/rtd-conf.git in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from -r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 6)) Collecting sphinx>=1.8 (from -r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 1)) Using cached https://files.pythonhosted.org/packages/7d/66/a4af242b4348b729b9d46ce5db23943ce9bca7da9bbe2ece60dc27f26420/Sphinx-1.8.5-py2.py3-none-any.whl Requirement already satisfied: sphinx_rtd_theme in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from -r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 2)) Requirement already satisfied: nbsphinx in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from -r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Requirement already satisfied: pandoc in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from -r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 4)) Requirement already satisfied: pint in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from -r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 5)) Requirement already satisfied: slumber in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from -r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 7)) Requirement already satisfied: breathe==4.7.3 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from -r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 8)) Requirement already satisfied: numpy in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from -r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 9)) Requirement already satisfied: matplotlib in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from -r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 10)) Requirement already satisfied: typing in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from -r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 11)) Requirement already satisfied: traits==4.6.0 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from -r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 12)) Requirement already satisfied: lxml==3.6.4 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from -r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 13)) Requirement already satisfied: scipy in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from -r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 14)) Requirement already satisfied: snowballstemmer>=1.1 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from sphinx>=1.8->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: alabaster<0.8,>=0.7 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from sphinx>=1.8->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: docutils>=0.11 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from sphinx>=1.8->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: Pygments>=2.0 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from sphinx>=1.8->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: setuptools in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from sphinx>=1.8->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: six>=1.5 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from sphinx>=1.8->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: imagesize in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from sphinx>=1.8->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: packaging in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from sphinx>=1.8->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: sphinxcontrib-websupport in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from sphinx>=1.8->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: Jinja2>=2.3 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from sphinx>=1.8->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: babel!=2.0,>=1.3 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from sphinx>=1.8->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: requests>=2.0.0 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from sphinx>=1.8->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: traitlets in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from nbsphinx->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Requirement already satisfied: nbformat in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from nbsphinx->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Requirement already satisfied: nbconvert!=5.4 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from nbsphinx->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Requirement already satisfied: ply in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from pandoc->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 4)) Requirement already satisfied: kiwisolver>=1.0.1 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from matplotlib->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 10)) Requirement already satisfied: python-dateutil>=2.1 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from matplotlib->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 10)) Requirement already satisfied: cycler>=0.10 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from matplotlib->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 10)) Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from matplotlib->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 10)) Requirement already satisfied: pytz in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from matplotlib->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 10)) Requirement already satisfied: MarkupSafe>=0.23 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from Jinja2>=2.3->sphinx>=1.8->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: idna<2.9,>=2.5 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from requests>=2.0.0->sphinx>=1.8->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: urllib3<1.25,>=1.21.1 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from requests>=2.0.0->sphinx>=1.8->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: certifi>=2017.4.17 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from requests>=2.0.0->sphinx>=1.8->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from requests>=2.0.0->sphinx>=1.8->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 1)) Requirement already satisfied: ipython-genutils in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from traitlets->nbsphinx->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Requirement already satisfied: decorator in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from traitlets->nbsphinx->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Requirement already satisfied: jupyter-core in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from nbformat->nbsphinx->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Requirement already satisfied: jsonschema!=2.5.0,>=2.4 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from nbformat->nbsphinx->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Requirement already satisfied: mistune>=0.8.1 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from nbconvert!=5.4->nbsphinx->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Requirement already satisfied: bleach in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from nbconvert!=5.4->nbsphinx->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Requirement already satisfied: pandocfilters>=1.4.1 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from nbconvert!=5.4->nbsphinx->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Requirement already satisfied: defusedxml in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from nbconvert!=5.4->nbsphinx->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Requirement already satisfied: testpath in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from nbconvert!=5.4->nbsphinx->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Requirement already satisfied: entrypoints>=0.2.2 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from nbconvert!=5.4->nbsphinx->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Requirement already satisfied: importlib-metadata; python_version < "3.8" in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat->nbsphinx->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Requirement already satisfied: attrs>=17.4.0 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat->nbsphinx->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Requirement already satisfied: pyrsistent>=0.14.0 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat->nbsphinx->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Requirement already satisfied: webencodings in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from bleach->nbconvert!=5.4->nbsphinx->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Requirement already satisfied: zipp>=0.5 in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from importlib-metadata; python_version < "3.8"->jsonschema!=2.5.0,>=2.4->nbformat->nbsphinx->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Requirement already satisfied: pathlib2; python_version == "3.4.*" or python_version < "3" in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from importlib-metadata; python_version < "3.8"->jsonschema!=2.5.0,>=2.4->nbformat->nbsphinx->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Requirement already satisfied: scandir; python_version < "3.5" in /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages (from pathlib2; python_version == "3.4.*" or python_version < "3"->importlib-metadata; python_version < "3.8"->jsonschema!=2.5.0,>=2.4->nbformat->nbsphinx->-r /user_builds/extra-hed/checkouts/latest/docs/requirements.txt (line 3)) Installing collected packages: sphinx Found existing installation: Sphinx 1.3.5 Uninstalling Sphinx-1.3.5: Successfully uninstalled Sphinx-1.3.5 Successfully installed sphinx-1.8.5 You are using pip version 9.0.1, however version 20.2.2 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2020-08-29T08:43:07.326000Z, end-time: 2020-08-29T08:43:07.349000Z, duration: 0, exit-code: 0 cat conf.py # -*- coding: utf-8 -*- # # Configuration file for the Sphinx documentation builder. # # This file does only contain a selection of the most common options. For a # full list see the documentation: # http://www.sphinx-doc.org/en/master/config # -- Path setup -------------------------------------------------------------- # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # import os import sys on_rtd = os.environ.get('READTHEDOCS') == 'True' if on_rtd: tags.add('readthedocs') from rtd_conf import global_conf sys.path.insert(0, os.path.abspath('..')) # -- Project information ----------------------------------------------------- project = 'EXtra-HED' copyright = '2020, Thomas Michelat' author = 'Thomas Michelat' # The short X.Y version #import extra_hed #version = extra_hed.__version__ version = '0.1' # The full version, including alpha/beta/rc tags #release = version release = '0.1' # -- General configuration --------------------------------------------------- # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.autodoc', 'sphinx.ext.doctest', 'sphinx.ext.intersphinx', 'sphinx.ext.todo', 'sphinx.ext.coverage', 'sphinx.ext.mathjax', 'sphinx.ext.ifconfig', 'sphinx.ext.viewcode', 'nbsphinx', 'sphinx_rtd_theme', ] # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The master toctree document. master_doc = 'index' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This pattern also affects html_static_path and html_extra_path. exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' on_rtd = os.environ.get('READTHEDOCS') == 'True' if on_rtd: tags.add('readthedocs') # -- Options for HTML output ------------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. # # html_theme_options = {} # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] # Custom sidebar templates, must be a dictionary that maps document names # to template names. # # The default sidebars (for documents that don't match any pattern) are # defined by theme itself. Builtin themes are using these templates by # default: ``['localtoc.html', 'relations.html', 'sourcelink.html', # 'searchbox.html']``. # # html_sidebars = {} # -- Options for HTMLHelp output --------------------------------------------- # Output file base name for HTML help builder. htmlhelp_basename = 'EXtra-HEDdoc' # -- Options for LaTeX output ------------------------------------------------ latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'EXtra-HED.tex', 'EXtra-HED Documentation', 'Thomas Michelat', 'manual'), ] # -- Options for manual page output ------------------------------------------ # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'extra-hed', 'EXtra-HED Documentation', [author], 1) ] # -- Options for Texinfo output ---------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'EXtra-HED', 'EXtra-HED Documentation', author, 'EXtra-HED', 'One line description of project.', 'Miscellaneous'), ] # -- Options for Epub output ------------------------------------------------- # Bibliographic Dublin Core info. epub_title = project # The unique identifier of the text. This can be a ISBN number # or the project homepage. # # epub_identifier = '' # A unique identification for the text. # # epub_uid = '' # A list of files that should not be packed into the epub file. epub_exclude_files = ['search.html'] # -- Extension configuration ------------------------------------------------- # -- Options for intersphinx extension --------------------------------------- # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = { 'python': ('http://docs.python.org/', None), 'extra-data': ('https://extra-data.readthedocs.io/en/latest/', None) } # -- Options for todo extension ---------------------------------------------- # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix else: SUFFIX = source_suffix[0] else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') html_static_path.append('/rtd_root/readthedocs/templates/sphinx/_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = False if 'html_theme' in globals(): if html_theme in ['default']: # Allow people to bail with a hack of having an html_style if not 'html_style' in globals(): import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True else: import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.org/websupport' if 'http' not in settings.MEDIA_URL: websupport2_static_url = '/static/' else: websupport2_static_url = '/media//static' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'MEDIA_URL': "/media/", 'PRODUCTION_DOMAIN': "exflrtd.desy.de", 'versions': [ ("latest", "/en/latest/"), ("stable", "/en/stable/"), ], 'downloads': [ ("pdf", "//exflrtd.desy.de/projects/extra-hed/downloads/pdf/latest/"), ("htmlzip", "//exflrtd.desy.de/projects/extra-hed/downloads/htmlzip/latest/"), ("epub", "//exflrtd.desy.de/projects/extra-hed/downloads/epub/latest/"), ], 'subprojects': [ ], 'slug': 'extra-hed', 'name': u'EXtra-HED', 'rtd_language': u'en', 'canonical_url': 'http://exflrtd.desy.de/docs/extra-hed/en/latest/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.org', 'github_user': 'None', 'github_repo': 'None', 'github_version': 'master', 'display_github': False, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-1', 'commit': '14db0786', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): extensions.append("readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] [rtd-command-info] start-time: 2020-08-29T08:43:07.732000Z, end-time: 2020-08-29T08:43:19.027000Z, duration: 11, exit-code: 0 python /user_builds/extra-hed/envs/latest/bin/sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done WARNING: extension 'sphinx_rtd_theme' has no setup() function; is it really a Sphinx extension module? making output directory... loading intersphinx inventory from http://docs.python.org/objects.inv... intersphinx inventory has moved: http://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv loading intersphinx inventory from https://extra-data.readthedocs.io/en/latest/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 5 source files that are out of date updating environment: 5 added, 0 changed, 0 removed reading sources... [ 20%] accessing_data reading sources... [ 40%] changelog reading sources... [ 60%] index reading sources... [ 80%] math reading sources... [100%] tutorial /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. RemovedInSphinx20Warning) /user_builds/extra-hed/checkouts/latest/docs/math.rst:4: WARNING: Error in "function" directive: unknown option: "attr". .. function:: extra_hed.math.moving_average :attr: data :attr: window Moving average of data over window using convolution data: ndarray Array to be averaged window: float Moving average window looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 20%] accessing_data writing output... [ 40%] changelog writing output... [ 60%] index writing output... [ 80%] math writing output... [100%] tutorial /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages/readthedocs_ext/readthedocs.py:75: RemovedInSphinx20Warning: builder.css_files is deprecated. Please use app.add_stylesheet() instead. app.builder.css_files.insert(0, theme_css) /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:4: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:19: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:25: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:38: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:64: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:80: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:90: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:112: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:138: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:163: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:198: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:224: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:258: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:285: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:310: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:324: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:346: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:357: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:380: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:394: WARNING: Pygments lexer name 'ipython3' is not known generating indices... genindex py-modindex writing additional pages... search copying images... [ 14%] _static/output_40_0.png copying images... [ 28%] _static/output_30_0.png copying images... [ 42%] _static/output_38_0.png copying images... [ 57%] _static/output_28_1.png copying images... [ 71%] _static/output_42_0.png copying images... [ 85%] _static/output_32_1.png copying images... [100%] _static/output_34_1.png copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 22 warnings. The HTML pages are in _build/html. Copying readthedocs-dynamic-include.js_t... done Copying readthedocs-data.js_t... done Copying searchtools.js_t... done /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages/readthedocs_ext/readthedocs.py:122: RemovedInSphinx20Warning: app.info() is now deprecated. Use sphinx.util.logging instead. app.info(bold('Copying %s... ' % file), nonl=True) /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages/readthedocs_ext/readthedocs.py:136: RemovedInSphinx20Warning: app.info() is now deprecated. Use sphinx.util.logging instead. app.info('done') [rtd-command-info] start-time: 2020-08-29T08:43:22.364000Z, end-time: 2020-08-29T08:43:30.236000Z, duration: 7, exit-code: 0 python /user_builds/extra-hed/envs/latest/bin/sphinx-build -T -b json -d _build/doctrees-json -D language=en . _build/json Running Sphinx v1.8.5 loading translations [en]... done WARNING: extension 'sphinx_rtd_theme' has no setup() function; is it really a Sphinx extension module? making output directory... loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [json]: targets for 5 source files that are out of date updating environment: [] 0 added, 2 changed, 0 removed reading sources... [ 50%] math reading sources... [100%] tutorial /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. RemovedInSphinx20Warning) /user_builds/extra-hed/checkouts/latest/docs/math.rst:4: WARNING: Error in "function" directive: unknown option: "attr". .. function:: extra_hed.math.moving_average :attr: data :attr: window Moving average of data over window using convolution data: ndarray Array to be averaged window: float Moving average window looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 20%] accessing_data writing output... [ 40%] changelog writing output... [ 60%] index writing output... [ 80%] math writing output... [100%] tutorial /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:4: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:19: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:25: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:38: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:64: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:80: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:90: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:112: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:138: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:163: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:198: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:224: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:258: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:285: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:310: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:324: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:346: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:357: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:380: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/tutorial.rst:394: WARNING: Pygments lexer name 'ipython3' is not known generating indices... genindex py-modindex writing additional pages... search copying images... [ 14%] _static/output_40_0.png copying images... [ 28%] _static/output_34_1.png copying images... [ 42%] _static/output_32_1.png copying images... [ 57%] _static/output_38_0.png copying images... [ 71%] _static/output_28_1.png copying images... [ 85%] _static/output_30_0.png copying images... [100%] _static/output_42_0.png copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 22 warnings. You can now process the JSON files in _build/json. [rtd-command-info] start-time: 2020-08-29T08:43:32.449000Z, end-time: 2020-08-29T08:43:40.505000Z, duration: 8, exit-code: 0 python /user_builds/extra-hed/envs/latest/bin/sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.8.5 loading translations [en]... done WARNING: extension 'sphinx_rtd_theme' has no setup() function; is it really a Sphinx extension module? making output directory... loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: [] 0 added, 2 changed, 0 removed reading sources... [ 50%] math reading sources... [100%] tutorial /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. RemovedInSphinx20Warning) /user_builds/extra-hed/checkouts/latest/docs/math.rst:4: WARNING: Error in "function" directive: unknown option: "attr". .. function:: extra_hed.math.moving_average :attr: data :attr: window Moving average of data over window using convolution data: ndarray Array to be averaged window: float Moving average window looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... tutorial accessing_data math changelog writing... /user_builds/extra-hed/checkouts/latest/docs/index.rst:4: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/index.rst:19: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/index.rst:25: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/index.rst:38: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/index.rst:64: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/index.rst:80: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/index.rst:90: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/index.rst:112: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/index.rst:138: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/index.rst:163: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/index.rst:198: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/index.rst:224: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/index.rst:258: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/index.rst:285: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/index.rst:310: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/index.rst:324: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/index.rst:346: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/index.rst:357: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/index.rst:380: WARNING: Pygments lexer name 'ipython3' is not known /user_builds/extra-hed/checkouts/latest/docs/index.rst:394: WARNING: Pygments lexer name 'ipython3' is not known done writing additional files... copying images... [ 14%] _static/output_28_1.png copying images... [ 28%] _static/output_32_1.png copying images... [ 42%] _static/output_30_0.png copying images... [ 57%] _static/output_42_0.png copying images... [ 71%] _static/output_40_0.png copying images... [ 85%] _static/output_34_1.png copying images... [100%] _static/output_38_0.png copying static files... done copying extra files... done dumping object inventory... done build succeeded, 22 warnings. The HTML page is in _build/localmedia. /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages/readthedocs_ext/readthedocs.py:75: RemovedInSphinx20Warning: builder.css_files is deprecated. Please use app.add_stylesheet() instead. app.builder.css_files.insert(0, theme_css) [rtd-command-info] start-time: 2020-08-29T08:43:41.212000Z, end-time: 2020-08-29T08:43:48.654000Z, duration: 7, exit-code: 0 python /user_builds/extra-hed/envs/latest/bin/sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.8.5 loading translations [en]... done WARNING: extension 'sphinx_rtd_theme' has no setup() function; is it really a Sphinx extension module? making output directory... loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: [] 0 added, 2 changed, 0 removed reading sources... [ 50%] math reading sources... [100%] tutorial /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. 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Rerun to get cross-references right. ){/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on EXtra-HED.pdf (29 pages, 598830 bytes). Transcript written on EXtra-HED.log. [rtd-command-info] start-time: 2020-08-29T08:43:50.557000Z, end-time: 2020-08-29T08:43:50.616000Z, duration: 0, exit-code: 0 makeindex -s python.ist EXtra-HED.idx This is makeindex, version 2.15 [TeX Live 2015/dev] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file EXtra-HED.idx....done (45 entries accepted, 0 rejected). Sorting entries....done (249 comparisons). Generating output file EXtra-HED.ind....done (114 lines written, 0 warnings). Output written in EXtra-HED.ind. Transcript written in EXtra-HED.ilg. [rtd-command-info] start-time: 2020-08-29T08:43:50.678000Z, end-time: 2020-08-29T08:43:52.726000Z, duration: 2, exit-code: 0 pdflatex -interaction=nonstopmode /user_builds/extra-hed/checkouts/latest/docs/_build/latex/EXtra-HED.tex This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (/user_builds/extra-hed/checkouts/latest/docs/_build/latex/EXtra-HED.tex LaTeX2e <2014/05/01> Babel <3.9l> and hyphenation patterns for 2 languages loaded. 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[3] [4] Chapter 2. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [5] [6] Chapter 3. [7] [8] [9] [10] [11 <./output_28_1.png>] [12 <./output_30_0.png>] [13 <./output_32_1.png>] [14 <./output_34_1.png>] [15 <./output_38_0.png>] [16 <./output_40_0.png> <./output_42_0.png>] [17] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [18] [19] [20] [21] [22] Chapter 4. [23] [24] [25] (./EXtra-HED.ind [26] Underfull \hbox (badness 10000) in paragraph at lines 19--20 []\T1/pcr/m/n/10 control_keys \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ex-tra_hed.instru ment.Device at- Overfull \hbox (48.35083pt too wide) in paragraph at lines 23--25 []\T1/pcr/m/n/10 dask_array() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ex-tra_hed.instru ment.extra_data.keydata.KeyData Underfull \hbox (badness 10000) in paragraph at lines 34--36 []\T1/pcr/m/n/10 extra_data.keydata.KeyData \T1/ptm/m/n/10 (\T1/ptm/m/it/10 cla ss in ex- Underfull \hbox (badness 10000) in paragraph at lines 38--39 []\T1/pcr/m/n/10 extra_hed.math.find_fwhm() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 bui lt-in func- Underfull \hbox (badness 10000) in paragraph at lines 43--44 []\T1/pcr/m/n/10 extra_hed.math.two_gaus_lore() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 built-in Underfull \hbox (badness 10000) in paragraph at lines 44--45 []\T1/pcr/m/n/10 extra_hed.math.two_gaussian() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 built-in Underfull \hbox (badness 10000) in paragraph at lines 45--46 []\T1/pcr/m/n/10 extra_hed.math.two_lorentzian() \T1/ptm/m/n/10 (\T1/ptm/m/it/1 0 built-in Underfull \hbox (badness 10000) in paragraph at lines 53--55 []\T1/pcr/m/n/10 hdf5_data_path \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ex- Overfull \hbox (2.44092pt too wide) in paragraph at lines 53--55 \T1/ptm/m/it/10 tra_hed.instrument.extra_data.keydata.KeyData Underfull \hbox (badness 10000) in paragraph at lines 68--69 []\T1/pcr/m/n/10 masked_value \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ex-tra_hed.instru ment.Detector at- Overfull \hbox (30.35083pt too wide) in paragraph at lines 74--76 []\T1/pcr/m/n/10 ndarray() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ex-tra_hed.instrumen t.extra_data.keydata.KeyData Underfull \hbox (badness 10000) in paragraph at lines 88--90 []\T1/pcr/m/n/10 select_trains() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ex- Overfull \hbox (2.44092pt too wide) in paragraph at lines 88--90 \T1/ptm/m/it/10 tra_hed.instrument.extra_data.keydata.KeyData [27] Overfull \hbox (18.35083pt too wide) in paragraph at lines 90--92 []\T1/pcr/m/n/10 serie() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ex-tra_hed.instrument. extra_data.keydata.KeyData Overfull \hbox (6.35083pt too wide) in paragraph at lines 92--94 []\T1/pcr/m/n/10 shape \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ex-tra_hed.instrument.ex tra_data.keydata.KeyData Underfull \hbox (badness 10000) in paragraph at lines 97--99 []\T1/pcr/m/n/10 train_from_id() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ex- Overfull \hbox (2.44092pt too wide) in paragraph at lines 97--99 \T1/ptm/m/it/10 tra_hed.instrument.extra_data.keydata.KeyData Underfull \hbox (badness 10000) in paragraph at lines 99--101 []\T1/pcr/m/n/10 train_from_index() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ex- Overfull \hbox (2.44092pt too wide) in paragraph at lines 99--101 \T1/ptm/m/it/10 tra_hed.instrument.extra_data.keydata.KeyData Overfull \hbox (24.35083pt too wide) in paragraph at lines 101--103 []\T1/pcr/m/n/10 trains() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ex-tra_hed.instrument .extra_data.keydata.KeyData Overfull \hbox (24.35083pt too wide) in paragraph at lines 110--112 []\T1/pcr/m/n/10 xarray() \T1/ptm/m/n/10 (\T1/ptm/m/it/10 ex-tra_hed.instrument .extra_data.keydata.KeyData [28]) (./EXtra-HED.aux) Package rerunfilecheck Warning: File `EXtra-HED.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on EXtra-HED.pdf (32 pages, 609115 bytes). Transcript written on EXtra-HED.log. [rtd-command-info] start-time: 2020-08-29T08:43:52.816000Z, end-time: 2020-08-29T08:43:52.838000Z, duration: 0, exit-code: 0 mv -f /user_builds/extra-hed/checkouts/latest/docs/_build/latex/EXtra-HED.pdf /user_builds/extra-hed/artifacts/latest/sphinx_pdf/extra-hed.pdf [rtd-command-info] start-time: 2020-08-29T08:43:53.376000Z, end-time: 2020-08-29T08:44:01.594000Z, duration: 8, exit-code: 0 python /user_builds/extra-hed/envs/latest/bin/sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.8.5 loading translations [en]... done WARNING: extension 'sphinx_rtd_theme' has no setup() function; is it really a Sphinx extension module? making output directory... loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [epub]: targets for 5 source files that are out of date updating environment: [] 0 added, 2 changed, 0 removed reading sources... [ 50%] math reading sources... [100%] tutorial /user_builds/extra-hed/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. RemovedInSphinx20Warning) /user_builds/extra-hed/checkouts/latest/docs/math.rst:4: WARNING: Error in "function" directive: unknown option: "attr". .. function:: extra_hed.math.moving_average :attr: data :attr: window Moving average of data over window using convolution data: ndarray Array to be averaged window: float Moving average window looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 20%] accessing_data writing output... [ 40%] changelog writing output... [ 60%] index writing output... [ 80%] math writing output... 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[ 14%] _static/output_42_0.png copying images... [ 28%] _static/output_38_0.png copying images... [ 42%] _static/output_40_0.png copying images... [ 57%] _static/output_34_1.png copying images... [ 71%] _static/output_32_1.png copying images... [ 85%] _static/output_28_1.png copying images... [100%] _static/output_30_0.png copying static files... done copying extra files... done writing mimetype file... writing META-INF/container.xml file... writing content.opf file... writing nav.xhtml file... writing toc.ncx file... writing EXtra-HED.epub file... build succeeded, 22 warnings. The ePub file is in _build/epub. [rtd-command-info] start-time: 2020-08-29T08:44:01.665000Z, end-time: 2020-08-29T08:44:01.690000Z, duration: 0, exit-code: 0 mv -f /user_builds/extra-hed/checkouts/latest/docs/_build/epub/EXtra-HED.epub /user_builds/extra-hed/artifacts/latest/sphinx_epub/extra-hed.epub