Read the Docs build information Build id: 19600 Project: dssc-operation-manual Version: latest Commit: e3ebc3b8cac32e532f571fa2c2b8c1c1e71287d7 Date: 2020-10-04T10:47:41.068132Z State: finished Success: True [rtd-command-info] start-time: 2020-10-04T15:47:49.151000Z, end-time: 2020-10-04T15:48:06.064000Z, duration: 16, exit-code: 0 python3 -mvirtualenv --no-site-packages --no-download /user_builds/dssc-operation-manual/envs/latest Using base prefix '/usr' New python executable in /user_builds/dssc-operation-manual/envs/latest/bin/python3 Not overwriting existing python script /user_builds/dssc-operation-manual/envs/latest/bin/python (you must use /user_builds/dssc-operation-manual/envs/latest/bin/python3) Installing setuptools, pip, wheel...done. [rtd-command-info] start-time: 2020-10-04T15:48:06.127000Z, end-time: 2020-10-04T15:48:52.285000Z, duration: 46, exit-code: 0 python /user_builds/dssc-operation-manual/envs/latest/bin/pip install --use-wheel -U --cache-dir /user_builds/dssc-operation-manual/.cache/pip sphinx==1.3.5 Pygments==2.1.3 setuptools==20.1.1 docutils==0.12 mkdocs==0.15.0 PyYAML==5.2 mock==1.0.1 pillow==2.6.1 git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext sphinx-rtd-theme==0.1.9 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.5.4 recommonmark==0.1.1 Collecting sphinx==1.3.5 Using cached https://files.pythonhosted.org/packages/ff/91/45883bc962bda1be7e78039b41cc15e1eb3327ec75679eedd067b5d07bd5/Sphinx-1.3.5-py2.py3-none-any.whl Requirement already up-to-date: Pygments==2.1.3 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages Collecting setuptools==20.1.1 Using cached https://files.pythonhosted.org/packages/e8/82/3b5455f74bf9ac0757d09c625b7741e6fc284d7519cffc3babb6c5173cf5/setuptools-20.1.1-py2.py3-none-any.whl Requirement already up-to-date: docutils==0.12 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: mkdocs==0.15.0 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: PyYAML==5.2 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: mock==1.0.1 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: pillow==2.6.1 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages Collecting readthedocs-sphinx-ext from git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext Cloning https://github.com/rtfd/readthedocs-sphinx-ext.git (to 0.6-alpha) to /tmp/pip-build-in34fb0y/readthedocs-sphinx-ext Requirement already up-to-date: sphinx-rtd-theme==0.1.9 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: alabaster!=0.7.5,<0.8,>=0.7 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: commonmark==0.5.4 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: recommonmark==0.1.1 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: Jinja2>=2.3 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: snowballstemmer>=1.1 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: six>=1.4 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: babel!=2.0,>=1.3 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: tornado>=4.1 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: click>=4.0 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: livereload>=2.3.2 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: mkdocs-bootswatch>=0.1.0 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: Markdown>=2.3.1 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: mkdocs-bootstrap>=0.1.1 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: requests in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from readthedocs-sphinx-ext) Requirement already up-to-date: nilsimsa>=0.3.7 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from readthedocs-sphinx-ext) Requirement already up-to-date: MarkupSafe>=0.23 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from Jinja2>=2.3->sphinx==1.3.5) Requirement already up-to-date: pytz>=2015.7 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from babel!=2.0,>=1.3->sphinx==1.3.5) Requirement already up-to-date: backports-abc>=0.4 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from tornado>=4.1->mkdocs==0.15.0) Requirement already up-to-date: urllib3<1.25,>=1.21.1 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: certifi>=2017.4.17 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: chardet<3.1.0,>=3.0.2 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: idna<2.9,>=2.5 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Installing collected packages: sphinx, setuptools, readthedocs-sphinx-ext Found existing installation: Sphinx 1.4.5 Uninstalling Sphinx-1.4.5: Successfully uninstalled Sphinx-1.4.5 Found existing installation: setuptools 28.8.0 Uninstalling setuptools-28.8.0: Successfully uninstalled setuptools-28.8.0 Found existing installation: readthedocs-sphinx-ext 0.5.4 Uninstalling readthedocs-sphinx-ext-0.5.4: Successfully uninstalled readthedocs-sphinx-ext-0.5.4 Running setup.py install for readthedocs-sphinx-ext: started Running setup.py install for readthedocs-sphinx-ext: finished with status 'done' Successfully installed readthedocs-sphinx-ext-0.5.4 setuptools-20.1.1 sphinx-1.3.5 You are using pip version 9.0.1, however version 20.2.3 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2020-10-04T15:48:52.480000Z, end-time: 2020-10-04T15:49:23.543000Z, duration: 31, exit-code: 0 python /user_builds/dssc-operation-manual/envs/latest/bin/pip install --exists-action=w --cache-dir /user_builds/dssc-operation-manual/.cache/pip -r/user_builds/dssc-operation-manual/checkouts/latest/requirements.txt Collecting git+https://git.xfel.eu/gitlab/xfel-rtd/rtd-conf.git (from -r /user_builds/dssc-operation-manual/checkouts/latest/requirements.txt (line 3)) Cloning https://git.xfel.eu/gitlab/xfel-rtd/rtd-conf.git to /tmp/pip-bezojs9i-build Requirement already satisfied (use --upgrade to upgrade): RTDConf==0.1 from git+https://git.xfel.eu/gitlab/xfel-rtd/rtd-conf.git in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from -r /user_builds/dssc-operation-manual/checkouts/latest/requirements.txt (line 3)) Collecting sphinx==1.4.5 (from -r /user_builds/dssc-operation-manual/checkouts/latest/requirements.txt (line 4)) Using cached https://files.pythonhosted.org/packages/d1/ad/9fe56e099e0bd288f1fdc037c2146b0698e2cba1d9a48636660f39a0e791/Sphinx-1.4.5-py2.py3-none-any.whl Requirement already satisfied: breathe==4.7.3 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from -r /user_builds/dssc-operation-manual/checkouts/latest/requirements.txt (line 5)) Requirement already satisfied: slumber==0.7.1 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from -r /user_builds/dssc-operation-manual/checkouts/latest/requirements.txt (line 6)) Requirement already satisfied: imagesize in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.4.5->-r /user_builds/dssc-operation-manual/checkouts/latest/requirements.txt (line 4)) Requirement already satisfied: babel!=2.0,>=1.3 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.4.5->-r /user_builds/dssc-operation-manual/checkouts/latest/requirements.txt (line 4)) Requirement already satisfied: six>=1.4 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.4.5->-r /user_builds/dssc-operation-manual/checkouts/latest/requirements.txt (line 4)) Requirement already satisfied: snowballstemmer>=1.1 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.4.5->-r /user_builds/dssc-operation-manual/checkouts/latest/requirements.txt (line 4)) Requirement already satisfied: Pygments>=2.0 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.4.5->-r /user_builds/dssc-operation-manual/checkouts/latest/requirements.txt (line 4)) Requirement already satisfied: alabaster<0.8,>=0.7 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.4.5->-r /user_builds/dssc-operation-manual/checkouts/latest/requirements.txt (line 4)) Requirement already satisfied: docutils>=0.11 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.4.5->-r /user_builds/dssc-operation-manual/checkouts/latest/requirements.txt (line 4)) Requirement already satisfied: Jinja2>=2.3 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.4.5->-r /user_builds/dssc-operation-manual/checkouts/latest/requirements.txt (line 4)) Requirement already satisfied: requests in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from slumber==0.7.1->-r /user_builds/dssc-operation-manual/checkouts/latest/requirements.txt (line 6)) Requirement already satisfied: pytz>=2015.7 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from babel!=2.0,>=1.3->sphinx==1.4.5->-r /user_builds/dssc-operation-manual/checkouts/latest/requirements.txt (line 4)) Requirement already satisfied: MarkupSafe>=0.23 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from Jinja2>=2.3->sphinx==1.4.5->-r /user_builds/dssc-operation-manual/checkouts/latest/requirements.txt (line 4)) Requirement already satisfied: urllib3<1.25,>=1.21.1 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from requests->slumber==0.7.1->-r /user_builds/dssc-operation-manual/checkouts/latest/requirements.txt (line 6)) Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from requests->slumber==0.7.1->-r /user_builds/dssc-operation-manual/checkouts/latest/requirements.txt (line 6)) Requirement already satisfied: idna<2.9,>=2.5 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from requests->slumber==0.7.1->-r /user_builds/dssc-operation-manual/checkouts/latest/requirements.txt (line 6)) Requirement already satisfied: certifi>=2017.4.17 in /user_builds/dssc-operation-manual/envs/latest/lib/python3.4/site-packages (from requests->slumber==0.7.1->-r /user_builds/dssc-operation-manual/checkouts/latest/requirements.txt (line 6)) Installing collected packages: sphinx Found existing installation: Sphinx 1.3.5 Uninstalling Sphinx-1.3.5: Successfully uninstalled Sphinx-1.3.5 Successfully installed sphinx-1.4.5 You are using pip version 9.0.1, however version 20.2.3 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2020-10-04T15:49:24.442000Z, end-time: 2020-10-04T15:49:24.487000Z, duration: 0, exit-code: 0 cat conf.py #!/usr/bin/env python3 # -*- coding: utf-8 -*- # # pnCCD documentation build configuration file, created by # sphinx-quickstart on Tuesday January 28, 2020 at 11:25:48. # # This file is execfile()d with the current directory set to its # containing directory. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # # import os # import sys # sys.path.insert(0, os.path.abspath('.')) # -- General configuration ------------------------------------------------ # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.autodoc', 'sphinx.ext.intersphinx', 'sphinx.ext.todo', 'sphinx.ext.mathjax', 'sphinx.ext.ifconfig', 'sphinx.ext.viewcode', 'sphinx.ext.graphviz', ] # Add any paths that contain templates here, relative to this directory. templates_path = ['.templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = 'DSSC' copyright = '2020, XFEL Detector Operation Group' #author = 'XFEL Detector Group' author = u'David Lomidze, Monica Turcato' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. version = '1.0' # The full version, including alpha/beta/rc tags. release = ': Version 1.0' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # If True, figures, tables and code-blocks are automatically numbered if they # have a caption. The numref role is enabled. Obeyed so far only by HTML and # LaTeX builders. Default is False. numfig = True # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = [] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = True # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # html_theme = 'default' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. # # html_theme_options = {} # Add any paths that contain custom themes here, relative to this directory. # html_theme_path = [] # The name for this set of Sphinx documents. # " v documentation" by default. # html_title = 'The DSSC Detector Operation Manual' # A shorter title for the navigation bar. Default is the same as html_title. # html_short_title = "DSSC Manual" # The name of an image file (relative to this directory) to place at the top # of the sidebar. # # html_logo = None # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # # html_favicon = None # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". #html_static_path = ['.static'] html_static_path = [] # ['_static'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the documentation. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # # html_show_sourcelink = True # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # # html_show_sphinx = True # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # # html_use_opensearch = '' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'h', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'r', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'DSSCdoc' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # #'preamble': # To get rid of blank pages after each chapter: 'extraclassoptions': 'openany,oneside,dvipsnames', 'preamble': r'''\newcommand{\docutilsrolemybold}{\bfseries} \newcommand{\DUrolered}[1]{{\color{Red}#1}} \newcommand{\DUroleblue}[1]{{\color{Blue}#1}} \newcommand{\DUrolegreen}[1]{{\color{Green}#1}} \newcommand{\DUroleyellow}[1]{{\color{Yellow}#1}} ''' # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). #latex_documents = [ # (master_doc, 'pnCCD.tex', 'pnCCD Documentation', # 'XFEL Detector Group', 'manual'), #] latex_documents = [ (master_doc, 'DSSC.tex', 'The DSSC Operation Manual', 'David Lomidze, Monica Turcato', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'dssc', 'The DSSC Operation Manual', [author], 1) ] # If true, show URL addresses after external links. # # man_show_urls = False # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'DSSC', 'The DSSC Operation Manual', author, 'DSSC', 'This is the DSSC detector operation manual.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. # intersphinx_mapping = {'https://docs.python.org/': None} #we add a custum function to work with intersphinx import slumber import json # the RTDHOST should be set to localhost if you only compile on RTD # otherwise it needs to be set to the server hosting the internal RTD RTDHOST = 'https://in.xfel.eu/readthedocs' api = slumber.API(base_url='{}/api/v1/'.format(RTDHOST)) projects = api.project.get()['objects'] isphinx = {'python': ('http://python.readthedocs.io/en/latest/', None), 'numpy': ('http://numpy.readthedocs.io/en/latest/', None), 'scipy': ('http://scipy.readthedocs.io/en/latest/', None)} for proj in projects: isphinx[proj['slug'].replace('-', '')] = \ ('{}/docs/{}/en/latest'.format(RTDHOST, proj['slug']), None) #intersphinx_mapping = isphinx intersphinx_mapping = {'https://docs.python.org/': None} def setup(app): app.add_config_value('includeDevInfo', 'false', 'env') ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix else: SUFFIX = source_suffix[0] else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') html_static_path.append('/rtd_root/readthedocs/templates/sphinx/_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = False if 'html_theme' in globals(): if html_theme in ['default']: # Allow people to bail with a hack of having an html_style if not 'html_style' in globals(): import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True else: import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.org/websupport' if 'http' not in settings.MEDIA_URL: websupport2_static_url = '/static/' else: websupport2_static_url = '/media//static' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'MEDIA_URL': "/media/", 'PRODUCTION_DOMAIN': "exflrtd.desy.de", 'versions': [ ("latest", "/en/latest/"), ], 'downloads': [ ("pdf", "//exflrtd.desy.de/projects/dssc-operation-manual/downloads/pdf/latest/"), ("htmlzip", "//exflrtd.desy.de/projects/dssc-operation-manual/downloads/htmlzip/latest/"), ("epub", "//exflrtd.desy.de/projects/dssc-operation-manual/downloads/epub/latest/"), ], 'subprojects': [ ], 'slug': 'dssc-operation-manual', 'name': u'DSSC Operation Manual', 'rtd_language': u'en', 'canonical_url': 'http://exflrtd.desy.de/docs/dssc-operation-manual/en/latest/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/source/', 'api_host': 'https://readthedocs.org', 'github_user': 'None', 'github_repo': 'None', 'github_version': 'master', 'display_github': False, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-1', 'commit': 'e3ebc3b8', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): extensions.append("readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] [rtd-command-info] start-time: 2020-10-04T15:49:24.641000Z, end-time: 2020-10-04T15:49:43.298000Z, duration: 18, exit-code: 0 python /user_builds/dssc-operation-manual/envs/latest/bin/sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.4.5 making output directory... loading translations [en]... done loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/ -> https://docs.python.org/3 building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 12 source files that are out of date updating environment: 12 added, 0 changed, 0 removed reading sources... [ 8%] abstract reading sources... [ 16%] acronyms reading sources... [ 25%] configuration reading sources... [ 33%] daq reading sources... [ 41%] index reading sources... [ 50%] miscellanea reading sources... [ 58%] powering reading sources... [ 66%] preface reading sources... [ 75%] revisions reading sources... [ 83%] shutdown reading sources... [ 91%] troubleshooting reading sources... [100%] vacuum_and_cooling /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:17: SEVERE: Unexpected section title. Miscellanea =========== /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:20: SEVERE: Unexpected section title. Connecting to the online cluster -------------------------------- /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:25: SEVERE: Unexpected section title. Setting up the DSSC processor viewer ------------------------------------ /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:52: SEVERE: Unexpected section title. Detector synchronization ------------------------ /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:72: SEVERE: Unexpected section title. DSSC manual powering up procedure: Switching ON the in-vacuum electronics up to ASICs ------------------------------------------------------------------------------------- /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:103: SEVERE: Unexpected section title. Configuring the detector ASICs ------------------------------ /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:108: SEVERE: Unexpected section title. Manual procedure: powering up the source voltages and the high voltage channels ------------------------------------------------------------------------------- /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:127: SEVERE: Unexpected section title. Manual procedure: powering off the DSSC detector ------------------------------------------------ /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:None: WARNING: image file not readable: Figures/figure5.4.png looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 8%] abstract writing output... [ 16%] acronyms writing output... [ 25%] configuration writing output... [ 33%] daq writing output... [ 41%] index writing output... [ 50%] miscellanea writing output... [ 58%] powering writing output... [ 66%] preface writing output... [ 75%] revisions writing output... [ 83%] shutdown writing output... [ 91%] troubleshooting writing output... [100%] vacuum_and_cooling /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:105: WARNING: undefined label: config /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/powering.rst:49: WARNING: undefined label: detectoron /user_builds/dssc-operation-manual/checkouts/latest/source/powering.rst:50: WARNING: undefined label: config /user_builds/dssc-operation-manual/checkouts/latest/source/powering.rst:51: WARNING: undefined label: powering /user_builds/dssc-operation-manual/checkouts/latest/source/powering.rst:131: WARNING: undefined label: chapter3 /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/troubleshooting.rst:115: WARNING: undefined label: config /user_builds/dssc-operation-manual/checkouts/latest/source/troubleshooting.rst:115: WARNING: undefined label: config /user_builds/dssc-operation-manual/checkouts/latest/source/troubleshooting.rst:122: WARNING: undefined label: online /user_builds/dssc-operation-manual/checkouts/latest/source/troubleshooting.rst:125: WARNING: undefined label: online /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated generating indices... genindex/user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated writing additional pages... search/user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated copying images... [ 5%] Figures/SIB.png copying images... [ 11%] Figures/ASICS.png copying images... [ 16%] Figures/HV.png copying images... [ 22%] Figures/Panel2.png copying images... [ 27%] Figures/DSSC_Main.png copying images... [ 33%] Figures/fig1_chapter6.png copying images... [ 38%] Figures/PPT_ASICS.png copying images... [ 44%] Figures/DAQ.png copying images... [ 50%] Figures/Power.png copying images... [ 55%] Figures/ASICS_Map.png copying images... [ 61%] Figures/Panel1.png copying images... [ 66%] Figures/IOB.png copying images... [ 72%] Figures/SIB2.png copying images... [ 77%] Figures/Preview.png copying images... [ 83%] Figures/RB.png copying images... [ 88%] Figures/Fig12.png copying images... [ 94%] Figures/AON.png copying images... [100%] Figures/Auto_Power.png copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 78 warnings. Copying readthedocs-dynamic-include.js_t... done Copying readthedocs-data.js_t... done Copying searchtools.js_t... done [rtd-command-info] start-time: 2020-10-04T15:49:48.058000Z, end-time: 2020-10-04T15:49:55.731000Z, duration: 7, exit-code: 0 python /user_builds/dssc-operation-manual/envs/latest/bin/sphinx-build -T -b json -d _build/doctrees-json -D language=en . _build/json Running Sphinx v1.4.5 making output directory... loading translations [en]... done loading pickled environment... not yet created loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/ -> https://docs.python.org/3 building [mo]: targets for 0 po files that are out of date building [json]: targets for 12 source files that are out of date updating environment: 12 added, 0 changed, 0 removed reading sources... [ 8%] abstract reading sources... [ 16%] acronyms reading sources... [ 25%] configuration reading sources... [ 33%] daq reading sources... [ 41%] index reading sources... [ 50%] miscellanea reading sources... [ 58%] powering reading sources... [ 66%] preface reading sources... [ 75%] revisions reading sources... [ 83%] shutdown reading sources... [ 91%] troubleshooting reading sources... [100%] vacuum_and_cooling /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:17: SEVERE: Unexpected section title. Miscellanea =========== /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:20: SEVERE: Unexpected section title. Connecting to the online cluster -------------------------------- /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:25: SEVERE: Unexpected section title. Setting up the DSSC processor viewer ------------------------------------ /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:52: SEVERE: Unexpected section title. Detector synchronization ------------------------ /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:72: SEVERE: Unexpected section title. DSSC manual powering up procedure: Switching ON the in-vacuum electronics up to ASICs ------------------------------------------------------------------------------------- /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:103: SEVERE: Unexpected section title. Configuring the detector ASICs ------------------------------ /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:108: SEVERE: Unexpected section title. Manual procedure: powering up the source voltages and the high voltage channels ------------------------------------------------------------------------------- /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:127: SEVERE: Unexpected section title. Manual procedure: powering off the DSSC detector ------------------------------------------------ /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:None: WARNING: image file not readable: Figures/figure5.4.png looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 8%] abstract writing output... [ 16%] acronyms writing output... [ 25%] configuration writing output... [ 33%] daq writing output... [ 41%] index writing output... [ 50%] miscellanea writing output... [ 58%] powering writing output... [ 66%] preface writing output... [ 75%] revisions writing output... [ 83%] shutdown writing output... [ 91%] troubleshooting writing output... [100%] vacuum_and_cooling /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:105: WARNING: undefined label: config /user_builds/dssc-operation-manual/checkouts/latest/source/powering.rst:49: WARNING: undefined label: detectoron /user_builds/dssc-operation-manual/checkouts/latest/source/powering.rst:50: WARNING: undefined label: config /user_builds/dssc-operation-manual/checkouts/latest/source/powering.rst:51: WARNING: undefined label: powering /user_builds/dssc-operation-manual/checkouts/latest/source/powering.rst:131: WARNING: undefined label: chapter3 /user_builds/dssc-operation-manual/checkouts/latest/source/troubleshooting.rst:115: WARNING: undefined label: config /user_builds/dssc-operation-manual/checkouts/latest/source/troubleshooting.rst:115: WARNING: undefined label: config /user_builds/dssc-operation-manual/checkouts/latest/source/troubleshooting.rst:122: WARNING: undefined label: online /user_builds/dssc-operation-manual/checkouts/latest/source/troubleshooting.rst:125: WARNING: undefined label: online generating indices... genindex writing additional pages... search copying images... [ 5%] Figures/Fig12.png copying images... [ 11%] Figures/ASICS_Map.png copying images... [ 16%] Figures/SIB2.png copying images... [ 22%] Figures/DAQ.png copying images... [ 27%] Figures/fig1_chapter6.png copying images... [ 33%] Figures/SIB.png copying images... [ 38%] Figures/Panel1.png copying images... [ 44%] Figures/Panel2.png copying images... [ 50%] Figures/IOB.png copying images... [ 55%] Figures/PPT_ASICS.png copying images... [ 61%] Figures/Power.png copying images... [ 66%] Figures/RB.png copying images... [ 72%] Figures/ASICS.png copying images... [ 77%] Figures/HV.png copying images... [ 83%] Figures/AON.png copying images... [ 88%] Figures/DSSC_Main.png copying images... [ 94%] Figures/Auto_Power.png copying images... [100%] Figures/Preview.png copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 22 warnings. [rtd-command-info] start-time: 2020-10-04T15:49:57.851000Z, end-time: 2020-10-04T15:50:06.018000Z, duration: 8, exit-code: 0 python /user_builds/dssc-operation-manual/envs/latest/bin/sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.4.5 making output directory... loading translations [en]... done loading pickled environment... not yet created loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/ -> https://docs.python.org/3 building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 12 added, 0 changed, 0 removed reading sources... [ 8%] abstract reading sources... [ 16%] acronyms reading sources... [ 25%] configuration reading sources... [ 33%] daq reading sources... [ 41%] index reading sources... [ 50%] miscellanea reading sources... [ 58%] powering reading sources... [ 66%] preface reading sources... [ 75%] revisions reading sources... [ 83%] shutdown reading sources... [ 91%] troubleshooting reading sources... [100%] vacuum_and_cooling /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:17: SEVERE: Unexpected section title. Miscellanea =========== /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:20: SEVERE: Unexpected section title. Connecting to the online cluster -------------------------------- /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:25: SEVERE: Unexpected section title. Setting up the DSSC processor viewer ------------------------------------ /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:52: SEVERE: Unexpected section title. Detector synchronization ------------------------ /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:72: SEVERE: Unexpected section title. DSSC manual powering up procedure: Switching ON the in-vacuum electronics up to ASICs ------------------------------------------------------------------------------------- /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:103: SEVERE: Unexpected section title. Configuring the detector ASICs ------------------------------ /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:108: SEVERE: Unexpected section title. Manual procedure: powering up the source voltages and the high voltage channels ------------------------------------------------------------------------------- /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:127: SEVERE: Unexpected section title. Manual procedure: powering off the DSSC detector ------------------------------------------------ /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:None: WARNING: image file not readable: Figures/figure5.4.png looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... revisions abstract preface acronyms vacuum_and_cooling powering daq shutdown miscellanea troubleshooting configuration /user_builds/dssc-operation-manual/checkouts/latest/source/powering.rst:49: WARNING: undefined label: detectoron /user_builds/dssc-operation-manual/checkouts/latest/source/powering.rst:50: WARNING: undefined label: config /user_builds/dssc-operation-manual/checkouts/latest/source/powering.rst:51: WARNING: undefined label: powering /user_builds/dssc-operation-manual/checkouts/latest/source/powering.rst:131: WARNING: undefined label: chapter3 /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:105: WARNING: undefined label: config /user_builds/dssc-operation-manual/checkouts/latest/source/troubleshooting.rst:115: WARNING: undefined label: config /user_builds/dssc-operation-manual/checkouts/latest/source/troubleshooting.rst:115: WARNING: undefined label: config /user_builds/dssc-operation-manual/checkouts/latest/source/troubleshooting.rst:122: WARNING: undefined label: online /user_builds/dssc-operation-manual/checkouts/latest/source/troubleshooting.rst:125: WARNING: undefined label: online writing... /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated done writing additional files... copying images... [ 5%] Figures/Power.png copying images... [ 11%] Figures/HV.png copying images... [ 16%] Figures/ASICS_Map.png copying images... [ 22%] Figures/PPT_ASICS.png copying images... [ 27%] Figures/SIB2.png copying images... [ 33%] Figures/Panel1.png copying images... [ 38%] Figures/SIB.png copying images... [ 44%] Figures/DSSC_Main.png copying images... [ 50%] Figures/DAQ.png copying images... [ 55%] Figures/Preview.png copying images... [ 61%] Figures/RB.png copying images... [ 66%] Figures/IOB.png copying images... [ 72%] Figures/fig1_chapter6.png copying images... [ 77%] Figures/AON.png copying images... [ 83%] Figures/ASICS.png copying images... [ 88%] Figures/Panel2.png copying images... [ 94%] Figures/Fig12.png copying images... [100%] Figures/Auto_Power.png copying static files... done copying extra files... done dumping object inventory... done build succeeded, 26 warnings. [rtd-command-info] start-time: 2020-10-04T15:50:06.759000Z, end-time: 2020-10-04T15:50:13.723000Z, duration: 6, exit-code: 0 python /user_builds/dssc-operation-manual/envs/latest/bin/sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.4.5 making output directory... loading translations [en]... done loading pickled environment... not yet created loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/ -> https://docs.python.org/3 building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 12 added, 0 changed, 0 removed reading sources... [ 8%] abstract reading sources... [ 16%] acronyms reading sources... [ 25%] configuration reading sources... [ 33%] daq reading sources... [ 41%] index reading sources... [ 50%] miscellanea reading sources... [ 58%] powering reading sources... [ 66%] preface reading sources... [ 75%] revisions reading sources... [ 83%] shutdown reading sources... [ 91%] troubleshooting reading sources... [100%] vacuum_and_cooling /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:17: SEVERE: Unexpected section title. Miscellanea =========== /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:20: SEVERE: Unexpected section title. Connecting to the online cluster -------------------------------- /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:25: SEVERE: Unexpected section title. Setting up the DSSC processor viewer ------------------------------------ /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:52: SEVERE: Unexpected section title. Detector synchronization ------------------------ /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:72: SEVERE: Unexpected section title. DSSC manual powering up procedure: Switching ON the in-vacuum electronics up to ASICs ------------------------------------------------------------------------------------- /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:103: SEVERE: Unexpected section title. Configuring the detector ASICs ------------------------------ /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:108: SEVERE: Unexpected section title. Manual procedure: powering up the source voltages and the high voltage channels ------------------------------------------------------------------------------- /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:127: SEVERE: Unexpected section title. Manual procedure: powering off the DSSC detector ------------------------------------------------ /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:None: WARNING: image file not readable: Figures/figure5.4.png looking for now-outdated files... none found pickling environment... done checking consistency... done processing DSSC.tex... index revisions abstract preface acronyms vacuum_and_cooling powering daq shutdown miscellanea troubleshooting configuration resolving references... /user_builds/dssc-operation-manual/checkouts/latest/source/powering.rst:49: WARNING: undefined label: detectoron /user_builds/dssc-operation-manual/checkouts/latest/source/powering.rst:50: WARNING: undefined label: config /user_builds/dssc-operation-manual/checkouts/latest/source/powering.rst:51: WARNING: undefined label: powering /user_builds/dssc-operation-manual/checkouts/latest/source/powering.rst:131: WARNING: undefined label: chapter3 /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:105: WARNING: undefined label: config /user_builds/dssc-operation-manual/checkouts/latest/source/troubleshooting.rst:115: WARNING: undefined label: config /user_builds/dssc-operation-manual/checkouts/latest/source/troubleshooting.rst:115: WARNING: undefined label: config /user_builds/dssc-operation-manual/checkouts/latest/source/troubleshooting.rst:122: WARNING: undefined label: online /user_builds/dssc-operation-manual/checkouts/latest/source/troubleshooting.rst:125: WARNING: undefined label: online writing... done copying images... Figures/DSSC_Main.png Figures/Power.png Figures/Fig12.png Figures/PPT_ASICS.png Figures/HV.png Figures/Preview.png Figures/SIB.png Figures/ASICS_Map.png Figures/RB.png Figures/ASICS.png Figures/AON.png Figures/Panel1.png Figures/DAQ.png Figures/Auto_Power.png Figures/fig1_chapter6.png Figures/SIB2.png Figures/IOB.png Figures/Panel2.png copying TeX support files... done build succeeded, 18 warnings. [rtd-command-info] start-time: 2020-10-04T15:50:13.788000Z, end-time: 2020-10-04T15:50:18.425000Z, duration: 4, exit-code: 0 pdflatex -interaction=nonstopmode /user_builds/dssc-operation-manual/checkouts/latest/source/_build/latex/DSSC.tex This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (/user_builds/dssc-operation-manual/checkouts/latest/source/_build/latex/DSSC.t ex LaTeX2e <2014/05/01> Babel <3.9l> and hyphenation patterns for 2 languages loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2009/06/02 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (./iftex.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./fncychap.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/fancybox/fancybox.sty Style option: `fancybox' v1.4 <2010/05/15> (tvz) ) (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty) (./tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/dvipsnam.def)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty )) (/usr/share/texlive/texmf-dist/tex/latex/threeparttable/threeparttable.sty) (/usr/share/texlive/texmf-dist/tex/latex/mdwtools/footnote.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/generic/pdftex/pdfcolor.tex) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) Package hyperref Message: Driver (autodetected): hpdftex. (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./newfloat.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (./needspace.sty) ** (sphinx) defining (legacy) text style macros without \sphinx prefix ** if clashes with packages, set latex_keep_old_macro_names=False in conf.py ) (/usr/share/texlive/texmf-dist/tex/latex/multirow/multirow.sty) (/usr/share/texlive/texmf-dist/tex/latex/eqparbox/eqparbox.sty (/usr/share/texlive/texmf-dist/tex/latex/environ/environ.sty (/usr/share/texlive/texmf-dist/tex/latex/trimspaces/trimspaces.sty))) Writing index file DSSC.idx No file DSSC.aux. (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 149. Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 149. [1] Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 149. Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 149. Package Fancyhdr Warning: \fancyhead's `E' option without twoside option is use less on input line 149. [1] [2] [3] [4] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) LaTeX Warning: Hyper reference `vacuum_and_cooling:figure1' on page 5 undefined on input line 273. LaTeX Warning: Reference `vacuum_and_cooling:figure1' on page 5 undefined on in put line 273. LaTeX Warning: Hyper reference `vacuum_and_cooling:figure2' on page 5 undefined on input line 288. LaTeX Warning: Reference `vacuum_and_cooling:figure2' on page 5 undefined on in put line 288. Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 296. [5] [6 <./DSSC_Main.png> ] [7 <./SIB.png>] Chapter 2. LaTeX Warning: Hyper reference `powering:figure3' on page 8 undefined on input line 307. LaTeX Warning: Reference `powering:figure3' on page 8 undefined on input line 3 07. LaTeX Warning: Hyper reference `powering:figure4' on page 8 undefined on input line 321. LaTeX Warning: Reference `powering:figure4' on page 8 undefined on input line 3 21. LaTeX Warning: Hyper reference `powering:figure5' on page 8 undefined on input line 322. LaTeX Warning: Reference `powering:figure5' on page 8 undefined on input line 3 22. Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 329. [8 <./SIB2.png>] [9 <./Power.png>] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) LaTeX Warning: Hyper reference `powering:figure6' on page 10 undefined on input line 375. LaTeX Warning: Reference `powering:figure6' on page 10 undefined on input line 375. LaTeX Warning: Hyper reference `powering:figure7' on page 10 undefined on input line 389. LaTeX Warning: Reference `powering:figure7' on page 10 undefined on input line 389. [10 <./HV.png>] [11 <./AON.png> <./Auto_Power.png>] LaTeX Warning: Hyper reference `powering:figure8' on page 12 undefined on input line 420. LaTeX Warning: Reference `powering:figure8' on page 12 undefined on input line 420. [12 <./PPT_ASICS.pn g>] Underfull \hbox (badness 10000) in paragraph at lines 431--437 []\T1/ptm/m/n/10 When the con-fig files are loaded, in-stan-ti-ate the \T1/pcr/ m/n/10 FPGA_Qi \T1/ptm/m/n/10 de-vices by right click-ing on the [13 <./Panel1. png> <./Panel2.png> <./IOB.png>] LaTeX Warning: Hyper reference `powering:figure10' on page 14 undefined on inpu t line 464. LaTeX Warning: Reference `powering:figure10' on page 14 undefined on input line 464. [14 <./RB. png>] [15 <./Preview.png>] [16 <./ASICS.png>] [17 <./ASICS_Map.png>] Chapter 3. Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 553. [18] [19 <./DAQ.png>] Overfull \hbox (87.35277pt too wide) in paragraph at lines 562--563 []\T1/ptm/m/n/10 Run the script which eval-u-ates dark im-age sub-trac-tion \T1 /pcr/m/n/10 python /gpfs/exfel/data/scratch/xcal/request_darks.py Underfull \hbox (badness 10000) in paragraph at lines 562--563 \T1/pcr/m/n/10 --instrument SCS --cycle 201931 --proposal 900095 --run xxx [xxx : number [20] Chapter 4. LaTeX Warning: Hyper reference `powering:figure7' on page 21 undefined on input line 589. LaTeX Warning: Reference `powering:figure7' on page 21 undefined on input line 589. LaTeX Warning: Hyper reference `shutdown:figure12' on page 21 undefined on inpu t line 589. LaTeX Warning: Reference `shutdown:figure12' on page 21 undefined on input line 589. Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 602. [21 <./Fig12.png>] [22] Chapter 5. Overfull \hbox (59.9047pt too wide) in paragraph at lines 1--740 []\T1/pcr/m/n/10 DSSC_Power_Status| Overfull \hbox (59.9047pt too wide) in paragraph at lines 1--740 []\T1/pcr/m/n/10 DSSC_Power_Status| Overfull \hbox (41.9047pt too wide) in paragraph at lines 1--740 []\T1/pcr/m/n/10 DSSC_HV_Status| Overfull \hbox (41.9047pt too wide) in paragraph at lines 1--740 []\T1/pcr/m/n/10 DSSC_HV_Status| Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 745. [23] Overfull \hbox (31.14589pt too wide) in paragraph at lines 1--833 []\T1/pcr/m/n/10 PREVIEW_CORRECTED| [24] [25] [26 <./fig1_chapter6.png>] Underfull \hbox (badness 10000) in paragraph at lines 908--909 []\T1/ptm/m/n/10 Run con-troller servers and database de-vices need to be re-in -stain-ti-ated by Underfull \hbox (badness 10000) in paragraph at lines 908--909 \T1/ptm/m/n/10 hand (\T1/pcr/m/n/10 pythonServers/scs_daq_rmdc_1\T1/ptm/m/n/10 , \T1/pcr/m/n/10 cppServers/scs-daq_rc_1\T1/ptm/m/n/10 , [27] Chapter 6. Overfull \hbox (59.93054pt too wide) in alignment at lines 1047--1221 [] [] [] [] Overfull \hbox (62.91064pt too wide) in alignment at lines 1221--1365 [] [] [] [] Package longtable Warning: Column widths have changed (longtable) in table 6.1 on input line 1365. Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 1365. [28] No file DSSC.ind. Package longtable Warning: Table widths have changed. Rerun LaTeX. [29] (./DSSC.aux) Package rerunfilecheck Warning: File `DSSC.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on DSSC.pdf (31 pages, 2892033 bytes). Transcript written on DSSC.log. [rtd-command-info] start-time: 2020-10-04T15:50:18.492000Z, end-time: 2020-10-04T15:50:18.567000Z, duration: 0, exit-code: 0 makeindex -s python.ist DSSC.idx This is makeindex, version 2.15 [TeX Live 2015/dev] (kpathsea + Thai support). Scanning style file ./python.ist......done (6 attributes redefined, 0 ignored). Scanning input file DSSC.idx...done (0 entries accepted, 0 rejected). Nothing written in DSSC.ind. Transcript written in DSSC.ilg. [rtd-command-info] start-time: 2020-10-04T15:50:18.634000Z, end-time: 2020-10-04T15:50:21.309000Z, duration: 2, exit-code: 0 pdflatex -interaction=nonstopmode /user_builds/dssc-operation-manual/checkouts/latest/source/_build/latex/DSSC.tex This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (/user_builds/dssc-operation-manual/checkouts/latest/source/_build/latex/DSSC.t ex LaTeX2e <2014/05/01> Babel <3.9l> and hyphenation patterns for 2 languages loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2009/06/02 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (./iftex.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./fncychap.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/fancybox/fancybox.sty Style option: `fancybox' v1.4 <2010/05/15> (tvz) ) (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty) (./tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/dvipsnam.def)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty )) (/usr/share/texlive/texmf-dist/tex/latex/threeparttable/threeparttable.sty) (/usr/share/texlive/texmf-dist/tex/latex/mdwtools/footnote.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/generic/pdftex/pdfcolor.tex) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) Package hyperref Message: Driver (autodetected): hpdftex. (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./newfloat.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (./needspace.sty) ** (sphinx) defining (legacy) text style macros without \sphinx prefix ** if clashes with packages, set latex_keep_old_macro_names=False in conf.py ) (/usr/share/texlive/texmf-dist/tex/latex/multirow/multirow.sty) (/usr/share/texlive/texmf-dist/tex/latex/eqparbox/eqparbox.sty (/usr/share/texlive/texmf-dist/tex/latex/environ/environ.sty (/usr/share/texlive/texmf-dist/tex/latex/trimspaces/trimspaces.sty))) Writing index file DSSC.idx (./DSSC.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./DSSC.out) (./DSSC.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 149. (./DSSC.toc) Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 149. [1] Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 149. Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 149. Package Fancyhdr Warning: \fancyhead's `E' option without twoside option is use less on input line 149. [1] [2] [3] [4] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 296. [5] [6 <./DSSC_Main.png >] [7 <./SIB.png>] Chapter 2. Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 329. [8 <./SIB2.png>] [9 <./Power.png>] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [10 <./H V.png>] [11 <./AON.png> <./Auto_Power.png>] [12 <./PPT_ASICS.pn g>] Underfull \hbox (badness 10000) in paragraph at lines 431--437 []\T1/ptm/m/n/10 When the con-fig files are loaded, in-stan-ti-ate the \T1/pcr/ m/n/10 FPGA_Qi \T1/ptm/m/n/10 de-vices by right click-ing on the [13 <./Panel1. png> <./Panel2.png> <./IOB.png>] [14 <./RB.png>] [15 <./Preview.png>] [16 <./ASICS.png>] [17 <./ASICS_Map.png>] Chapter 3. Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 553. [18] [19 <./DAQ.png>] Overfull \hbox (87.35277pt too wide) in paragraph at lines 562--563 []\T1/ptm/m/n/10 Run the script which eval-u-ates dark im-age sub-trac-tion \T1 /pcr/m/n/10 python /gpfs/exfel/data/scratch/xcal/request_darks.py Underfull \hbox (badness 10000) in paragraph at lines 562--563 \T1/pcr/m/n/10 --instrument SCS --cycle 201931 --proposal 900095 --run xxx [xxx : number [20] Chapter 4. Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 602. [21 <./Fig12.png>] [22] Chapter 5. Overfull \hbox (59.9047pt too wide) in paragraph at lines 1--740 []\T1/pcr/m/n/10 DSSC_Power_Status| Overfull \hbox (59.9047pt too wide) in paragraph at lines 1--740 []\T1/pcr/m/n/10 DSSC_Power_Status| Overfull \hbox (41.9047pt too wide) in paragraph at lines 1--740 []\T1/pcr/m/n/10 DSSC_HV_Status| Overfull \hbox (41.9047pt too wide) in paragraph at lines 1--740 []\T1/pcr/m/n/10 DSSC_HV_Status| Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 745. [23] Overfull \hbox (31.14589pt too wide) in paragraph at lines 1--833 []\T1/pcr/m/n/10 PREVIEW_CORRECTED| [24] [25] [26 <./fig1_chapter6.png>] Underfull \hbox (badness 10000) in paragraph at lines 908--909 []\T1/ptm/m/n/10 Run con-troller servers and database de-vices need to be re-in -stain-ti-ated by Underfull \hbox (badness 10000) in paragraph at lines 908--909 \T1/ptm/m/n/10 hand (\T1/pcr/m/n/10 pythonServers/scs_daq_rmdc_1\T1/ptm/m/n/10 , \T1/pcr/m/n/10 cppServers/scs-daq_rc_1\T1/ptm/m/n/10 , [27] Chapter 6. Overfull \hbox (62.91064pt too wide) in alignment at lines 1035--1037 [] [] [] [] Package longtable Warning: Column widths have changed (longtable) in table 6.1 on input line 1365. Package Fancyhdr Warning: \fancyfoot's `E' option without twoside option is use less on input line 1365. [28] (./DSSC.ind) Package longtable Warning: Table widths have changed. Rerun LaTeX. [29] (./DSSC.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on DSSC.pdf (31 pages, 2900218 bytes). Transcript written on DSSC.log. [rtd-command-info] start-time: 2020-10-04T15:50:21.383000Z, end-time: 2020-10-04T15:50:21.441000Z, duration: 0, exit-code: 0 mv -f /user_builds/dssc-operation-manual/checkouts/latest/source/_build/latex/DSSC.pdf /user_builds/dssc-operation-manual/artifacts/latest/sphinx_pdf/dssc-operation-manual.pdf [rtd-command-info] start-time: 2020-10-04T15:50:21.934000Z, end-time: 2020-10-04T15:50:30.316000Z, duration: 8, exit-code: 0 python /user_builds/dssc-operation-manual/envs/latest/bin/sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.4.5 making output directory... loading translations [en]... done loading pickled environment... not yet created loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/ -> https://docs.python.org/3 building [mo]: targets for 0 po files that are out of date building [epub]: targets for 12 source files that are out of date updating environment: 12 added, 0 changed, 0 removed reading sources... [ 8%] abstract reading sources... [ 16%] acronyms reading sources... [ 25%] configuration reading sources... [ 33%] daq reading sources... [ 41%] index reading sources... [ 50%] miscellanea reading sources... [ 58%] powering reading sources... [ 66%] preface reading sources... [ 75%] revisions reading sources... [ 83%] shutdown reading sources... [ 91%] troubleshooting reading sources... [100%] vacuum_and_cooling /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:17: SEVERE: Unexpected section title. Miscellanea =========== /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:20: SEVERE: Unexpected section title. Connecting to the online cluster -------------------------------- /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:25: SEVERE: Unexpected section title. Setting up the DSSC processor viewer ------------------------------------ /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:52: SEVERE: Unexpected section title. Detector synchronization ------------------------ /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:72: SEVERE: Unexpected section title. DSSC manual powering up procedure: Switching ON the in-vacuum electronics up to ASICs ------------------------------------------------------------------------------------- /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:103: SEVERE: Unexpected section title. Configuring the detector ASICs ------------------------------ /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:108: SEVERE: Unexpected section title. Manual procedure: powering up the source voltages and the high voltage channels ------------------------------------------------------------------------------- /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:127: SEVERE: Unexpected section title. Manual procedure: powering off the DSSC detector ------------------------------------------------ /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:None: WARNING: image file not readable: Figures/figure5.4.png looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 8%] abstract writing output... [ 16%] acronyms writing output... [ 25%] configuration writing output... [ 33%] daq writing output... [ 41%] index writing output... [ 50%] miscellanea writing output... [ 58%] powering writing output... [ 66%] preface writing output... [ 75%] revisions writing output... [ 83%] shutdown writing output... [ 91%] troubleshooting writing output... [100%] vacuum_and_cooling /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/miscellanea.rst:105: WARNING: undefined label: config /user_builds/dssc-operation-manual/checkouts/latest/source/powering.rst:49: WARNING: undefined label: detectoron /user_builds/dssc-operation-manual/checkouts/latest/source/powering.rst:50: WARNING: undefined label: config /user_builds/dssc-operation-manual/checkouts/latest/source/powering.rst:51: WARNING: undefined label: powering /user_builds/dssc-operation-manual/checkouts/latest/source/powering.rst:131: WARNING: undefined label: chapter3 /user_builds/dssc-operation-manual/checkouts/latest/source/troubleshooting.rst:115: WARNING: undefined label: config /user_builds/dssc-operation-manual/checkouts/latest/source/troubleshooting.rst:115: WARNING: undefined label: config /user_builds/dssc-operation-manual/checkouts/latest/source/troubleshooting.rst:122: WARNING: undefined label: online /user_builds/dssc-operation-manual/checkouts/latest/source/troubleshooting.rst:125: WARNING: undefined label: online generating indices... genindex writing additional pages... search copying images... [ 5%] Figures/HV.png copying images... [ 11%] Figures/DAQ.png copying images... [ 16%] Figures/PPT_ASICS.png copying images... [ 22%] Figures/fig1_chapter6.png copying images... [ 27%] Figures/SIB2.png copying images... [ 33%] Figures/Power.png copying images... [ 38%] Figures/Auto_Power.png copying images... [ 44%] Figures/Panel2.png copying images... [ 50%] Figures/AON.png copying images... [ 55%] Figures/RB.png copying images... [ 61%] Figures/IOB.png copying images... [ 66%] Figures/Fig12.png copying images... [ 72%] Figures/SIB.png copying images... [ 77%] Figures/Preview.png copying images... [ 83%] Figures/ASICS_Map.png copying images... [ 88%] Figures/Panel1.png copying images... [ 94%] Figures/ASICS.png copying images... [100%] Figures/DSSC_Main.png copying static files... done copying extra files... done /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated writing mimetype file... writing META-INF/container.xml file... writing content.opf file... writing toc.ncx file... /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'abstract' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'preface' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'acronyms' that doesn't have a title: no link will be generated /user_builds/dssc-operation-manual/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to document 'miscellanea' that doesn't have a title: no link will be generated writing DSSC.epub file... build succeeded, 30 warnings. [rtd-command-info] start-time: 2020-10-04T15:50:30.396000Z, end-time: 2020-10-04T15:50:30.472000Z, duration: 0, exit-code: 0 mv -f /user_builds/dssc-operation-manual/checkouts/latest/source/_build/epub/DSSC.epub /user_builds/dssc-operation-manual/artifacts/latest/sphinx_epub/dssc-operation-manual.epub