Read the Docs build information Build id: 20981 Project: pnccd-analysis-manual Version: latest Commit: d7b864ae4257688034be6688f40fda7e7f881beb Date: 2020-12-05T09:50:28.941500Z State: finished Success: False [rtd-command-info] start-time: 2020-12-05T15:50:31.973000Z, end-time: 2020-12-05T15:50:44.614000Z, duration: 12, exit-code: 0 python3 -mvirtualenv --no-site-packages --no-download /user_builds/pnccd-analysis-manual/envs/latest Using base prefix '/usr' New python executable in /user_builds/pnccd-analysis-manual/envs/latest/bin/python3 Not overwriting existing python script /user_builds/pnccd-analysis-manual/envs/latest/bin/python (you must use /user_builds/pnccd-analysis-manual/envs/latest/bin/python3) Installing setuptools, pip, wheel...done. [rtd-command-info] start-time: 2020-12-05T15:50:44.672000Z, end-time: 2020-12-05T15:51:20.785000Z, duration: 36, exit-code: 0 python /user_builds/pnccd-analysis-manual/envs/latest/bin/pip install --use-wheel -U --cache-dir /user_builds/pnccd-analysis-manual/.cache/pip sphinx==1.3.5 Pygments==2.1.3 setuptools==20.1.1 docutils==0.12 mkdocs==0.15.0 PyYAML==5.2 mock==1.0.1 pillow==2.6.1 git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext sphinx-rtd-theme==0.1.9 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.5.4 recommonmark==0.1.1 Collecting sphinx==1.3.5 Using cached https://files.pythonhosted.org/packages/ff/91/45883bc962bda1be7e78039b41cc15e1eb3327ec75679eedd067b5d07bd5/Sphinx-1.3.5-py2.py3-none-any.whl Requirement already up-to-date: Pygments==2.1.3 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages Collecting setuptools==20.1.1 Using cached https://files.pythonhosted.org/packages/e8/82/3b5455f74bf9ac0757d09c625b7741e6fc284d7519cffc3babb6c5173cf5/setuptools-20.1.1-py2.py3-none-any.whl Requirement already up-to-date: docutils==0.12 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: mkdocs==0.15.0 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: PyYAML==5.2 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: mock==1.0.1 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: pillow==2.6.1 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages Collecting readthedocs-sphinx-ext from git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext Cloning https://github.com/rtfd/readthedocs-sphinx-ext.git (to 0.6-alpha) to /tmp/pip-build-tgixsz81/readthedocs-sphinx-ext Requirement already up-to-date: sphinx-rtd-theme==0.1.9 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: alabaster!=0.7.5,<0.8,>=0.7 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: commonmark==0.5.4 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: recommonmark==0.1.1 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: Jinja2>=2.3 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: babel!=2.0,>=1.3 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: snowballstemmer>=1.1 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: six>=1.4 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: mkdocs-bootstrap>=0.1.1 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: tornado>=4.1 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: click>=4.0 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: Markdown>=2.3.1 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: livereload>=2.3.2 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: mkdocs-bootswatch>=0.1.0 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: requests in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from readthedocs-sphinx-ext) Requirement already up-to-date: nilsimsa>=0.3.7 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from readthedocs-sphinx-ext) Requirement already up-to-date: MarkupSafe>=0.23 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from Jinja2>=2.3->sphinx==1.3.5) Requirement already up-to-date: pytz>=2015.7 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from babel!=2.0,>=1.3->sphinx==1.3.5) Requirement already up-to-date: backports-abc>=0.4 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from tornado>=4.1->mkdocs==0.15.0) Requirement already up-to-date: chardet<3.1.0,>=3.0.2 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: certifi>=2017.4.17 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: urllib3<1.25,>=1.21.1 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: idna<2.9,>=2.5 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Installing collected packages: sphinx, setuptools, readthedocs-sphinx-ext Found existing installation: Sphinx 1.4.5 Uninstalling Sphinx-1.4.5: Successfully uninstalled Sphinx-1.4.5 Found existing installation: setuptools 28.8.0 Uninstalling setuptools-28.8.0: Successfully uninstalled setuptools-28.8.0 Found existing installation: readthedocs-sphinx-ext 0.5.4 Uninstalling readthedocs-sphinx-ext-0.5.4: Successfully uninstalled readthedocs-sphinx-ext-0.5.4 Running setup.py install for readthedocs-sphinx-ext: started Running setup.py install for readthedocs-sphinx-ext: finished with status 'done' Successfully installed readthedocs-sphinx-ext-0.5.4 setuptools-20.1.1 sphinx-1.3.5 You are using pip version 9.0.1, however version 20.3.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2020-12-05T15:51:20.848000Z, end-time: 2020-12-05T15:51:43.369000Z, duration: 22, exit-code: 0 python /user_builds/pnccd-analysis-manual/envs/latest/bin/pip install --exists-action=w --cache-dir /user_builds/pnccd-analysis-manual/.cache/pip -rrequirements.txt Collecting git+https://git.xfel.eu/gitlab/xfel-rtd/rtd-conf.git (from -r requirements.txt (line 3)) Cloning https://git.xfel.eu/gitlab/xfel-rtd/rtd-conf.git to /tmp/pip-j7uiqq63-build Requirement already satisfied (use --upgrade to upgrade): RTDConf==0.1 from git+https://git.xfel.eu/gitlab/xfel-rtd/rtd-conf.git in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from -r requirements.txt (line 3)) Collecting sphinx==1.4.5 (from -r requirements.txt (line 4)) Using cached https://files.pythonhosted.org/packages/d1/ad/9fe56e099e0bd288f1fdc037c2146b0698e2cba1d9a48636660f39a0e791/Sphinx-1.4.5-py2.py3-none-any.whl Requirement already satisfied: breathe==4.7.3 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from -r requirements.txt (line 5)) Requirement already satisfied: slumber==0.7.1 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from -r requirements.txt (line 6)) Requirement already satisfied: Pygments>=2.0 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.4.5->-r requirements.txt (line 4)) Requirement already satisfied: six>=1.4 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.4.5->-r requirements.txt (line 4)) Requirement already satisfied: babel!=2.0,>=1.3 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.4.5->-r requirements.txt (line 4)) Requirement already satisfied: docutils>=0.11 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.4.5->-r requirements.txt (line 4)) Requirement already satisfied: alabaster<0.8,>=0.7 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.4.5->-r requirements.txt (line 4)) Requirement already satisfied: imagesize in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.4.5->-r requirements.txt (line 4)) Requirement already satisfied: snowballstemmer>=1.1 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.4.5->-r requirements.txt (line 4)) Requirement already satisfied: Jinja2>=2.3 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from sphinx==1.4.5->-r requirements.txt (line 4)) Requirement already satisfied: requests in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from slumber==0.7.1->-r requirements.txt (line 6)) Requirement already satisfied: pytz>=2015.7 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from babel!=2.0,>=1.3->sphinx==1.4.5->-r requirements.txt (line 4)) Requirement already satisfied: MarkupSafe>=0.23 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from Jinja2>=2.3->sphinx==1.4.5->-r requirements.txt (line 4)) Requirement already satisfied: certifi>=2017.4.17 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from requests->slumber==0.7.1->-r requirements.txt (line 6)) Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from requests->slumber==0.7.1->-r requirements.txt (line 6)) Requirement already satisfied: urllib3<1.25,>=1.21.1 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from requests->slumber==0.7.1->-r requirements.txt (line 6)) Requirement already satisfied: idna<2.9,>=2.5 in /user_builds/pnccd-analysis-manual/envs/latest/lib/python3.4/site-packages (from requests->slumber==0.7.1->-r requirements.txt (line 6)) Installing collected packages: sphinx Found existing installation: Sphinx 1.3.5 Uninstalling Sphinx-1.3.5: Successfully uninstalled Sphinx-1.3.5 Successfully installed sphinx-1.4.5 You are using pip version 9.0.1, however version 20.3.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2020-12-05T15:51:44.099000Z, end-time: 2020-12-05T15:51:44.117000Z, duration: 0, exit-code: 0 cat conf.py #!/usr/bin/env python3 # -*- coding: utf-8 -*- # # pnCCD documentation build configuration file, created by # sphinx-quickstart on Tuesday January 28, 2020 at 11:25:48. # # This file is execfile()d with the current directory set to its # containing directory. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # # import os # import sys # sys.path.insert(0, os.path.abspath('.')) # -- General configuration ------------------------------------------------ # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.autodoc', 'sphinx.ext.intersphinx', 'sphinx.ext.todo', 'sphinx.ext.mathjax', 'sphinx.ext.ifconfig', 'sphinx.ext.viewcode', 'sphinx.ext.graphviz', ] # Add any paths that contain templates here, relative to this directory. templates_path = ['.templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = 'pnCCD_Performance' copyright = '2020, XFEL Detector Operation Group' #author = 'XFEL Detector Group' author = u'Kiana Setoodehnia' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. version = '2.0' # The full version, including alpha/beta/rc tags. release = ': Version 2.0' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # If True, figures, tables and code-blocks are automatically numbered if they # have a caption. The numref role is enabled. Obeyed so far only by HTML and # LaTeX builders. Default is False. numfig = True # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = [] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = True # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # html_theme = 'alabaster' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. # # html_theme_options = {} # Add any paths that contain custom themes here, relative to this directory. # html_theme_path = [] # The name for this set of Sphinx documents. # " v documentation" by default. # html_title = 'Performance Evaluation of the New 1 Mpix pnCCD at SQS' # A shorter title for the navigation bar. Default is the same as html_title. # html_short_title = "pnCCD Performance Manual" # The name of an image file (relative to this directory) to place at the top # of the sidebar. # # html_logo = None # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # # html_favicon = None # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". #html_static_path = ['.static'] html_static_path = [] # ['_static'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the documentation. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # # html_show_sourcelink = True # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # # html_show_sphinx = True # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # # html_use_opensearch = '' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'h', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'r', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # Output file base name for HTML help builder. htmlhelp_basename = 'pnCCDdoc' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # #'preamble': # To get rid of blank pages after each chapter: 'extraclassoptions': 'openany,oneside,dvipsnames', 'preamble': r'''\newcommand{\docutilsrolemybold}{\bfseries} \newcommand{\DUrolered}[1]{{\color{Red}#1}} \newcommand{\DUroleblue}[1]{{\color{Blue}#1}} \newcommand{\DUrolegreen}[1]{{\color{Green}#1}} \newcommand{\DUroleyellow}[1]{{\color{Yellow}#1}} ''' # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'pnCCD_Performance.tex', 'Performance Evaluation of the New 1 Mpix pnCCD at SQS', 'Kiana Setoodehnia', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'pnccd', 'Performance Evaluation of the New 1 Mpix pnCCD at SQS', [author], 1) ] # If true, show URL addresses after external links. # # man_show_urls = False # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'pnCCD_Performance', 'Performance Evaluation of the New 1 Mpix pnCCD at SQS', author, 'pnCCD_Performance', 'This is the pnCCD performance manual.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. # intersphinx_mapping = {'https://docs.python.org/': None} #we add a custum function to work with intersphinx import slumber import json # the RTDHOST should be set to localhost if you only compile on RTD # otherwise it needs to be set to the server hosting the internal RTD RTDHOST = 'https://in.xfel.eu/readthedocs' api = slumber.API(base_url='{}/api/v1/'.format(RTDHOST)) projects = api.project.get()['objects'] isphinx = {'python': ('http://python.readthedocs.io/en/latest/', None), 'numpy': ('http://numpy.readthedocs.io/en/latest/', None), 'scipy': ('http://scipy.readthedocs.io/en/latest/', None)} for proj in projects: isphinx[proj['slug'].replace('-', '')] = \ ('{}/docs/{}/en/latest'.format(RTDHOST, proj['slug']), None) #intersphinx_mapping = isphinx intersphinx_mapping = {'https://docs.python.org/': None} def setup(app): app.add_config_value('includeDevInfo', 'false', 'env') ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix else: SUFFIX = source_suffix[0] else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') html_static_path.append('/rtd_root/readthedocs/templates/sphinx/_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = False if 'html_theme' in globals(): if html_theme in ['default']: # Allow people to bail with a hack of having an html_style if not 'html_style' in globals(): import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True else: import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.org/websupport' if 'http' not in settings.MEDIA_URL: websupport2_static_url = '/static/' else: websupport2_static_url = '/media//static' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'MEDIA_URL': "/media/", 'PRODUCTION_DOMAIN': "exflrtd.desy.de", 'versions': [ ("latest", "/en/latest/"), ], 'downloads': [ ], 'subprojects': [ ], 'slug': 'pnccd-analysis-manual', 'name': u'pnCCD Analysis Manual', 'rtd_language': u'en', 'canonical_url': 'http://exflrtd.desy.de/docs/pnccd-analysis-manual/en/latest/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/source/', 'api_host': 'https://readthedocs.org', 'github_user': 'None', 'github_repo': 'None', 'github_version': 'master', 'display_github': False, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-1', 'commit': 'd7b864ae', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): extensions.append("readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] [rtd-command-info] start-time: 2020-12-05T15:51:44.212000Z, end-time: 2020-12-05T15:52:06.292000Z, duration: 22, exit-code: 0 python /user_builds/pnccd-analysis-manual/envs/latest/bin/sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.4.5 making output directory... loading translations [en]... done loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/ -> https://docs.python.org/3 building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 6 source files that are out of date updating environment: 6 added, 0 changed, 0 removed reading sources... 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[rtd-command-info] start-time: 2020-12-05T15:52:32.843000Z, end-time: 2020-12-05T15:52:53.721000Z, duration: 20, exit-code: 0 python /user_builds/pnccd-analysis-manual/envs/latest/bin/sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.4.5 making output directory... loading translations [en]... done loading pickled environment... not yet created loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/ -> https://docs.python.org/3 building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 6 added, 0 changed, 0 removed reading sources... [ 16%] dark reading sources... [ 33%] full_well reading sources... [ 50%] illuminated reading sources... [ 66%] index reading sources... [ 83%] introduction reading sources... 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[rtd-command-info] start-time: 2020-12-05T15:52:55.149000Z, end-time: 2020-12-05T15:53:14.840000Z, duration: 19, exit-code: 0 python /user_builds/pnccd-analysis-manual/envs/latest/bin/sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.4.5 making output directory... loading translations [en]... done loading pickled environment... not yet created loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/ -> https://docs.python.org/3 building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 6 added, 0 changed, 0 removed reading sources... [ 16%] dark reading sources... [ 33%] full_well reading sources... [ 50%] illuminated reading sources... [ 66%] index reading sources... [ 83%] introduction reading sources... [100%] revisions None:212: WARNING: image file not readable: Figures/Uncorr.png looking for now-outdated files... none found pickling environment... done checking consistency... done processing pnCCD_Performance.tex... index revisions introduction dark illuminated full_well resolving references... /user_builds/pnccd-analysis-manual/checkouts/latest/source/dark.rst:54: WARNING: undefined label: badpixels /user_builds/pnccd-analysis-manual/checkouts/latest/source/dark.rst:350: WARNING: undefined label: normalmode /user_builds/pnccd-analysis-manual/checkouts/latest/source/dark.rst:350: WARNING: undefined label: hdrmode /user_builds/pnccd-analysis-manual/checkouts/latest/source/dark.rst:350: WARNING: undefined label: savemode /user_builds/pnccd-analysis-manual/checkouts/latest/source/dark.rst:352: WARNING: undefined label: commonmode /user_builds/pnccd-analysis-manual/checkouts/latest/source/dark.rst:417: WARNING: undefined label: badpixels 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Figures/Lower_Right_Fit.png Figures/Pixel_476_508_PTC.png Figures/rGain.png Figures/Fit1.png Figures/pnccd-sqs-schematics.png Figures/GainMapsComparisonOne.png Figures/CM_Hist_512_HDR_Q3.png Figures/Cor.png Figures/Lower_Right.png Figures/CM_Hist_512_HDR_Q1.png Figures/CM_Effect_1.png Figures/OffsetGain1_Save.png Figures/CM_Hist_1_Normal_Q1.png Figures/Offset_with_BP.png Figures/ED_Fit.png Figures/Q0_PSD_Gain1.png Figures/Peak1_q.png Figures/Peak3.png Figures/Offset_New.png Figures/Noise_with_BP.png Figures/FirstSingles.png Figures/GainMapsComparisonThree.png Figures/OffsetVsGain.png Figures/CommonModePerQuadrant_HDR.png Figures/UncorrectedNoiseMap.png Figures/CM_Effect_1_No_BP.png Figures/Q0_CM_vs_Frequency_Gain1.png Figures/PatternClassifier.png Figures/CM_Effect_1Hist_No_BP.png Figures/Stability1.png Figures/Upper_Left.png Figures/NonFlatField.png Figures/LR_Fit.png Figures/Upper_Left_Fit.png Figures/Stability256_HDR.png Figures/CommonModePerQuadrant_Save.png Figures/OffsetGain1_Normal.png Figures/CTI_Data.png Figures/CM_Hist_512_HDR_Q0.png Figures/Peak1.png Figures/Corrected_Hists.png Figures/Peak2.png Figures/Pixel_425_425_PTC.png Figures/EventSpectra.png Figures/GainMapTwo.png Figures/CTEmap.png Figures/BadPixelsStatistics.png Figures/CM_Hist_1_Normal_Q3.png Figures/CM_Effect_1Hist.png Figures/FinalNoiseMapHist.png Figures/PatternStatistics.png Figures/Peak2_q.png Figures/NoEmptyFrames.png Figures/Stability256.png Figures/UncorrectedNoiseMapHist.png Figures/PositionComparison_One.png Figures/NoiseAlgorithm.png Figures/Gain_Correction_Methods.png Figures/NoiseVsSignal.png Figures/CTI.png Figures/Pixel_548_525_PTC.png Figures/Patterns.png Figures/Run166.png Figures/CTI_Fit.png Figures/MethodTwo.png Figures/CM_Hist_512_HDR_Q2.png Figures/FinalNoiseMap.png Figures/PerPixelSpectra.png Figures/CM_per_Frame.png Figures/Pixel_476_508_PTC_fit.png Figures/OffsetGain1_HDR.png Figures/EmptyFrames.png Figures/Q0_CM_vs_Frequency_First_Frame_Gain1.png Figures/BadPixelsMap.png Figures/CM_Hist_1_Normal_Q2.png Figures/SumPerQuadrantSpectra.png Figures/Peak3_q.png Figures/OffsetSTDVsGain.png Figures/CommonModeMath.png Figures/Corrected_Hists_Zoomed.png Figures/FlatField.png Figures/GainMap.png Figures/CM_Hist_1_Normal_Q0.png Figures/GainMapsComparisonTwo.png Figures/CorrectedNoiseMap.png Figures/PerRowSpectra.png Figures/GaussianFits.png Figures/MethodOne.png Figures/PositionComparison_Two.png Figures/CorrectedNoiseMapHist.png Figures/Pixel_476_508_Signal.png copying TeX support files... done build succeeded, 42 warnings. [rtd-command-info] start-time: 2020-12-05T15:53:14.908000Z, end-time: 2020-12-05T15:53:33.193000Z, duration: 18, exit-code: 1 pdflatex -interaction=nonstopmode /user_builds/pnccd-analysis-manual/checkouts/latest/source/_build/latex/pnCCD_Performance.tex This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (/user_builds/pnccd-analysis-manual/checkouts/latest/source/_build/latex/pnCCD_ Performance.tex LaTeX2e <2014/05/01> Babel <3.9l> and hyphenation patterns for 2 languages loaded. 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Type H for immediate help. ... l.2758 \hline\end{tabulary} [44 <./FlatField.png> <./NonFlatField.png>] [45 <./Cor.png>] [46 <./Corrected_Hists.png>] [47 <./Cor rected_Hists_Zoomed.png> <./PatternStatistics.png>] [48 <./EventSpectra.png>] [49 <./PerRowSpectra.png> < ./SumPerQuadrantSpectra.png>] [50 <./PerPixelSpectra.png>] [51] [52 <./CT I_Data.png>] [53 <./CTI_Fit.png>] [54 <./CTI.png>] [55 <./CTEmap.png>] [56 <./rGain.png>] [57 <./GainMap.png> <./GaussianFits.png> ] [58 <./Fit1.png>] [59 <./GainMapTwo.png>] [60 <./GainMapsComparisonOne.png>] [61 <./GainMapsComparisonTwo.png>] [62 <./Ga inMapsComparisonThree.png>] [63 <./Upper_Left .png>] [64 <./Lower_Right.png> <./Upper_Left_Fit.png>] [65 <./Lower_Righ t_Fit.png>] [66 <./Gain_Correction_Methods.png>] [67 <./PositionComparison_One. png>] [68 <./PositionComparison_Two.png>] [69 <./MethodOne.png> <./MethodTwo.pn g>] [70 <./Peak1_q.png> <./Peak2_q.png>] [71 <./Peak3_q.png> <./Peak1.png>] [72 <./Peak2.png> <./Peak3.png>] [73 <./LR_Fit.png> <./ED_Fit.png>] [74] [75] Chapter 4. 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Missing \endgroup inserted. \endgroup l.3577 \hline\end{tabulary} ! Missing \endgroup inserted. \endgroup l.3577 \hline\end{tabulary} ! Missing } inserted. } l.3577 \hline\end{tabulary} ! Missing \endgroup inserted. \endgroup l.3577 \hline\end{tabulary} ! Missing } inserted. } l.3577 \hline\end{tabulary} ! TeX capacity exceeded, sorry [input stack size=5000]. \\->\ifhmode \unskip \else \@nolnerr \fi \par \@ifstar {\nobreak \@xcentercr... l.3577 \hline\end{tabulary} ! ==> Fatal error occurred, no output PDF file produced! Transcript written on pnCCD_Performance.log. [rtd-command-info] start-time: 2020-12-05T15:53:51.273000Z, end-time: 2020-12-05T15:54:12.544000Z, duration: 21, exit-code: 0 python /user_builds/pnccd-analysis-manual/envs/latest/bin/sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub Running Sphinx v1.4.5 making output directory... loading translations [en]... done loading pickled environment... not yet created loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/ -> https://docs.python.org/3 building [mo]: targets for 0 po files that are out of date building [epub]: targets for 6 source files that are out of date updating environment: 6 added, 0 changed, 0 removed reading sources... [ 16%] dark reading sources... [ 33%] full_well reading sources... [ 50%] illuminated reading sources... [ 66%] index reading sources... [ 83%] introduction reading sources... 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