Read the Docs build information Build id: 21000 Project: data-analysis-user-documentation Version: latest Commit: 8142af48d04dc1fd5b4c25d78c41bcc2b58fc0b6 Date: 2020-12-08T08:54:45.462774Z State: finished Success: True [rtd-command-info] start-time: 2020-12-08T14:54:51.440000Z, end-time: 2020-12-08T14:55:03.998000Z, duration: 12, exit-code: 0 python3 -mvirtualenv --no-site-packages --no-download /user_builds/data-analysis-user-documentation/envs/latest Using base prefix '/usr' New python executable in /user_builds/data-analysis-user-documentation/envs/latest/bin/python3 Not overwriting existing python script /user_builds/data-analysis-user-documentation/envs/latest/bin/python (you must use /user_builds/data-analysis-user-documentation/envs/latest/bin/python3) Installing setuptools, pip, wheel...done. [rtd-command-info] start-time: 2020-12-08T14:55:04.064000Z, end-time: 2020-12-08T14:55:44.889000Z, duration: 40, exit-code: 0 python /user_builds/data-analysis-user-documentation/envs/latest/bin/pip install --use-wheel -U --cache-dir /user_builds/data-analysis-user-documentation/.cache/pip sphinx==1.3.5 Pygments==2.1.3 setuptools==20.1.1 docutils==0.12 mkdocs==0.15.0 PyYAML==5.2 mock==1.0.1 pillow==2.6.1 git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext sphinx-rtd-theme==0.1.9 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.5.4 recommonmark==0.1.1 Collecting sphinx==1.3.5 Using cached https://files.pythonhosted.org/packages/ff/91/45883bc962bda1be7e78039b41cc15e1eb3327ec75679eedd067b5d07bd5/Sphinx-1.3.5-py2.py3-none-any.whl Requirement already up-to-date: Pygments==2.1.3 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages Collecting setuptools==20.1.1 Using cached https://files.pythonhosted.org/packages/e8/82/3b5455f74bf9ac0757d09c625b7741e6fc284d7519cffc3babb6c5173cf5/setuptools-20.1.1-py2.py3-none-any.whl Requirement already up-to-date: docutils==0.12 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: mkdocs==0.15.0 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: PyYAML==5.2 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: mock==1.0.1 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: pillow==2.6.1 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages Collecting readthedocs-sphinx-ext from git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext Cloning https://github.com/rtfd/readthedocs-sphinx-ext.git (to 0.6-alpha) to /tmp/pip-build-djyb83pd/readthedocs-sphinx-ext Requirement already up-to-date: sphinx-rtd-theme==0.1.9 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: alabaster!=0.7.5,<0.8,>=0.7 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: commonmark==0.5.4 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: recommonmark==0.1.1 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages Requirement already up-to-date: six>=1.4 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: Jinja2>=2.3 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: babel!=2.0,>=1.3 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: snowballstemmer>=1.1 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from sphinx==1.3.5) Requirement already up-to-date: livereload>=2.3.2 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: tornado>=4.1 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: Markdown>=2.3.1 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: click>=4.0 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: mkdocs-bootstrap>=0.1.1 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: mkdocs-bootswatch>=0.1.0 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from mkdocs==0.15.0) Requirement already up-to-date: requests in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from readthedocs-sphinx-ext) Requirement already up-to-date: nilsimsa>=0.3.7 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from readthedocs-sphinx-ext) Requirement already up-to-date: MarkupSafe>=0.23 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from Jinja2>=2.3->sphinx==1.3.5) Requirement already up-to-date: pytz>=2015.7 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from babel!=2.0,>=1.3->sphinx==1.3.5) Requirement already up-to-date: backports-abc>=0.4 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from tornado>=4.1->mkdocs==0.15.0) Requirement already up-to-date: idna<2.9,>=2.5 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: certifi>=2017.4.17 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: chardet<3.1.0,>=3.0.2 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Requirement already up-to-date: urllib3<1.25,>=1.21.1 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from requests->readthedocs-sphinx-ext) Installing collected packages: sphinx, setuptools, readthedocs-sphinx-ext Found existing installation: Sphinx 1.8.5 Uninstalling Sphinx-1.8.5: Successfully uninstalled Sphinx-1.8.5 Found existing installation: setuptools 28.8.0 Uninstalling setuptools-28.8.0: Successfully uninstalled setuptools-28.8.0 Found existing installation: readthedocs-sphinx-ext 0.5.4 Uninstalling readthedocs-sphinx-ext-0.5.4: Successfully uninstalled readthedocs-sphinx-ext-0.5.4 Running setup.py install for readthedocs-sphinx-ext: started Running setup.py install for readthedocs-sphinx-ext: finished with status 'done' Successfully installed readthedocs-sphinx-ext-0.5.4 setuptools-20.1.1 sphinx-1.3.5 You are using pip version 9.0.1, however version 20.3.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2020-12-08T14:55:44.959000Z, end-time: 2020-12-08T14:56:15.009000Z, duration: 30, exit-code: 0 python /user_builds/data-analysis-user-documentation/envs/latest/bin/pip install --exists-action=w --cache-dir /user_builds/data-analysis-user-documentation/.cache/pip -rsource/requirements.txt Collecting sphinx>=1.8 (from -r source/requirements.txt (line 1)) Using cached https://files.pythonhosted.org/packages/7d/66/a4af242b4348b729b9d46ce5db23943ce9bca7da9bbe2ece60dc27f26420/Sphinx-1.8.5-py2.py3-none-any.whl Requirement already satisfied: sphinx_rtd_theme in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from -r source/requirements.txt (line 2)) Requirement already satisfied: nbsphinx in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from -r source/requirements.txt (line 3)) Requirement already satisfied: karabo_bridge in /user_builds/data-analysis-user-documentation/envs/latest/src/karabo-bridge (from -r source/requirements.txt (line 4)) Requirement already satisfied: pandoc in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from -r source/requirements.txt (line 5)) Requirement already satisfied: sphinxcontrib-websupport in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from sphinx>=1.8->-r source/requirements.txt (line 1)) Requirement already satisfied: imagesize in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from sphinx>=1.8->-r source/requirements.txt (line 1)) Requirement already satisfied: setuptools in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from sphinx>=1.8->-r source/requirements.txt (line 1)) Requirement already satisfied: typing; python_version < "3.5" in 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/user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from nbsphinx->-r source/requirements.txt (line 3)) Requirement already satisfied: nbformat in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from nbsphinx->-r source/requirements.txt (line 3)) Requirement already satisfied: traitlets in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from nbsphinx->-r source/requirements.txt (line 3)) Requirement already satisfied: msgpack>=0.5.4 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from karabo_bridge->-r source/requirements.txt (line 4)) Requirement already satisfied: msgpack-numpy in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from karabo_bridge->-r source/requirements.txt (line 4)) Requirement already satisfied: numpy in 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/user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from requests>=2.0.0->sphinx>=1.8->-r source/requirements.txt (line 1)) Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from requests>=2.0.0->sphinx>=1.8->-r source/requirements.txt (line 1)) Requirement already satisfied: certifi>=2017.4.17 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from requests>=2.0.0->sphinx>=1.8->-r source/requirements.txt (line 1)) Requirement already satisfied: MarkupSafe>=0.23 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from Jinja2>=2.3->sphinx>=1.8->-r source/requirements.txt (line 1)) Requirement already satisfied: pyparsing>=2.0.2 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from packaging->sphinx>=1.8->-r source/requirements.txt (line 1)) Requirement already satisfied: pandocfilters>=1.4.1 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from nbconvert!=5.4->nbsphinx->-r source/requirements.txt (line 3)) Requirement already satisfied: jupyter-core in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from nbconvert!=5.4->nbsphinx->-r source/requirements.txt (line 3)) Requirement already satisfied: entrypoints>=0.2.2 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from nbconvert!=5.4->nbsphinx->-r source/requirements.txt (line 3)) Requirement already satisfied: defusedxml in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from nbconvert!=5.4->nbsphinx->-r source/requirements.txt (line 3)) Requirement already satisfied: testpath in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from nbconvert!=5.4->nbsphinx->-r 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source/requirements.txt (line 3)) Requirement already satisfied: webencodings in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from bleach->nbconvert!=5.4->nbsphinx->-r source/requirements.txt (line 3)) Requirement already satisfied: pyrsistent>=0.14.0 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat->nbsphinx->-r source/requirements.txt (line 3)) Requirement already satisfied: attrs>=17.4.0 in /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat->nbsphinx->-r source/requirements.txt (line 3)) Installing collected packages: sphinx Found existing installation: Sphinx 1.3.5 Uninstalling Sphinx-1.3.5: Successfully uninstalled Sphinx-1.3.5 Successfully installed sphinx-1.8.5 You are using pip version 9.0.1, however version 20.3.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2020-12-08T14:56:19.830000Z, end-time: 2020-12-08T14:56:19.851000Z, duration: 0, exit-code: 0 cat conf.py #!/usr/bin/env python3 # -*- coding: utf-8 -*- # # User documentation documentation build configuration file, created by # sphinx-quickstart on Mon Jun 26 08:59:34 2017. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # import os # import sys # sys.path.insert(0, os.path.abspath('.')) # -- General configuration ------------------------------------------------ # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.intersphinx', 'sphinx.ext.todo', 'sphinx.ext.autodoc', 'sphinx.ext.napoleon', 'nbsphinx', 'sphinx_rtd_theme', ] # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = 'User Documentation' copyright = 'European XFEL' author = 'Hans Fangohr, Sandor Brockhauser and others from CAS and ITDM at XFEL' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. version = '1.0' # The full version, including alpha/beta/rc tags. release = '1.0' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = True # If true, figures, tables and code-blocks are automatically numbered if # they have a caption. At same time, the numref role is enabled. For now, # it works only with the HTML builder and LaTeX builder. Default is False. numfig = True on_rtd = os.environ.get('READTHEDOCS') == 'True' if on_rtd: tags.add('readthedocs') # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. # # html_theme_options = {} # Add any paths that contain custom themes here, relative to this directory. # html_theme_path = [] # The name for this set of Sphinx documents. # " v documentation" by default. # # html_title = 'Karabo Commissioning Guidelines v1.4.7' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # # html_logo = None # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # # html_favicon = None # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the documentation. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # # html_show_sourcelink = True # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # # html_show_sphinx = True # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # # html_use_opensearch = '' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'h', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'r', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # -- Options for HTMLHelp output ------------------------------------------ # Output file base name for HTML help builder. htmlhelp_basename = 'Userdocumentationdoc' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'Userdocumentation.tex', 'User Documentation', 'European XFEL', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # latex_logo = "_templates/european-xfel-logo_cmyk.eps" # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'userdocumentation', 'User documentation Documentation', [author], 1) ] # If true, show URL addresses after external links. # # man_show_urls = False # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'Userdocumentation', 'User documentation Documentation', author, 'Userdocumentation', 'One line description of project.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'https://docs.python.org/': None} # We have trouble with some of the links in link check # (see https://git.xfel.eu/gitlab/dataAnalysis/user-documentation/issues/2) # -> we ignore the links for which the link check fails on CI linkcheck_ignore = [ 'https://in.xfel.eu/.*', 'https://max-display.desy.de:3443', 'https://confluence.desy.de/display/IS/Docker+containers+on+Maxwell', 'https://confluence.desy.de/display/IS/Alphabetical+List+of+Packages', 'https://www.sigmaaldrich.com/.*', # No idea why this fails on CI , but it does. "https://doi.org/10.18429/JACoW-ICALEPCS2017-TUCPA01", "https://doi.org/10.18429/JACoW-ICALEPCS2019-TUCPR02", ] # Limit to 1 minute waiting if a server is stalling linkcheck_timeout = 60 ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix else: SUFFIX = source_suffix[0] else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') html_static_path.append('/rtd_root/readthedocs/templates/sphinx/_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = False if 'html_theme' in globals(): if html_theme in ['default']: # Allow people to bail with a hack of having an html_style if not 'html_style' in globals(): import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True else: import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.org/websupport' if 'http' not in settings.MEDIA_URL: websupport2_static_url = '/static/' else: websupport2_static_url = '/media//static' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'MEDIA_URL': "/media/", 'PRODUCTION_DOMAIN': "exflrtd.desy.de", 'versions': [ ("latest", "/en/latest/"), ], 'downloads': [ ("pdf", "//exflrtd.desy.de/projects/data-analysis-user-documentation/downloads/pdf/latest/"), ("htmlzip", "//exflrtd.desy.de/projects/data-analysis-user-documentation/downloads/htmlzip/latest/"), ("epub", "//exflrtd.desy.de/projects/data-analysis-user-documentation/downloads/epub/latest/"), ], 'subprojects': [ ], 'slug': 'data-analysis-user-documentation', 'name': u'Data Analysis User Documentation', 'rtd_language': u'en', 'canonical_url': 'http://exflrtd.desy.de/docs/data-analysis-user-documentation/en/latest/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/source/', 'api_host': 'https://readthedocs.org', 'github_user': 'None', 'github_repo': 'None', 'github_version': 'master', 'display_github': False, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-1', 'commit': '8142af48', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): extensions.append("readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] [rtd-command-info] start-time: 2020-12-08T14:56:20.873000Z, end-time: 2020-12-08T14:56:37.276000Z, duration: 16, exit-code: 0 python /user_builds/data-analysis-user-documentation/envs/latest/bin/sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done WARNING: extension 'sphinx_rtd_theme' has no setup() function; is it really a Sphinx extension module? making output directory... loading intersphinx inventory from https://docs.python.org/objects.inv... intersphinx inventory has moved: https://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 17 source files that are out of date updating environment: 17 added, 0 changed, 0 removed reading sources... [ 5%] candidate-frame-lists reading sources... [ 11%] changes reading sources... [ 17%] citations reading sources... [ 23%] computing reading sources... [ 29%] datafiles reading sources... [ 35%] hdf5_virtualise/hdf5_virtualise reading sources... [ 41%] index reading sources... [ 47%] jhub reading sources... [ 52%] karabo_bridge/cpp-client reading sources... [ 58%] karabo_bridge/protocol reading sources... [ 64%] karabo_bridge/py-client reading sources... [ 70%] karabo_bridge/recorder reading sources... [ 76%] online reading sources... [ 82%] overview reading sources... [ 88%] resources reading sources... [ 94%] software reading sources... [100%] usecases /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. RemovedInSphinx20Warning) /user_builds/data-analysis-user-documentation/checkouts/latest/source/jhub.rst:251: WARNING: Block quote ends without a blank line; unexpected unindent. /user_builds/data-analysis-user-documentation/envs/latest/src/karabo-bridge/karabo_bridge/client.py:docstring of karabo_bridge.Client:21: WARNING: Unknown interpreted text role "method". /user_builds/data-analysis-user-documentation/envs/latest/src/karabo-bridge/karabo_bridge/client.py:docstring of karabo_bridge.Client:26: WARNING: Unexpected indentation. looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 5%] candidate-frame-lists writing output... [ 11%] changes writing output... [ 17%] citations writing output... [ 23%] computing writing output... [ 29%] datafiles writing output... [ 35%] hdf5_virtualise/hdf5_virtualise writing output... [ 41%] index writing output... [ 47%] jhub writing output... [ 52%] karabo_bridge/cpp-client writing output... [ 58%] karabo_bridge/protocol writing output... [ 64%] karabo_bridge/py-client writing output... [ 70%] karabo_bridge/recorder writing output... [ 76%] online writing output... [ 82%] overview writing output... [ 88%] resources writing output... [ 94%] software writing output... [100%] usecases generating indices... genindex py-modindex writing additional pages... search copying images... [ 6%] _images/FastCCDCorrelatorScene.png copying images... [ 12%] _images/XasTimProcessorScene.png copying images... [ 18%] _images/EXtra-foam-ImageTool.png copying images... [ 25%] _images/EXtra-foam-LPD_azimuthal_integration.png copying images... [ 31%] _images/h5.png copying images... [ 37%] _images/geoAssembler.png copying images... [ 43%] _images/Level2_workstations.jpg copying images... [ 50%] _images/xas-tim-view.png copying images... [ 56%] _images/max-jhub-partitions.png copying images... [ 62%] _images/max-jupyter_manual_token.png copying images... [ 68%] _images/correlations.png copying images... [ 75%] _images/Level1_workstations.jpg copying images... [ 81%] _images/lpd2tile_gui.png copying images... [ 87%] _images/EXtra-foam_FastCCD_SCS.png copying images... [ 93%] _images/EXtra-foam-ROI.png copying images... [100%] _images/trains_pulses.png copying downloadable files... [100%] _static/XHQ_Map.pdf copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 4 warnings. The HTML pages are in _build/html. Copying readthedocs-dynamic-include.js_t... done Copying readthedocs-data.js_t... done Copying searchtools.js_t... done /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages/readthedocs_ext/readthedocs.py:75: RemovedInSphinx20Warning: builder.css_files is deprecated. Please use app.add_stylesheet() instead. app.builder.css_files.insert(0, theme_css) /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages/readthedocs_ext/readthedocs.py:122: RemovedInSphinx20Warning: app.info() is now deprecated. Use sphinx.util.logging instead. app.info(bold('Copying %s... ' % file), nonl=True) /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages/readthedocs_ext/readthedocs.py:136: RemovedInSphinx20Warning: app.info() is now deprecated. Use sphinx.util.logging instead. app.info('done') [rtd-command-info] start-time: 2020-12-08T14:56:43.888000Z, end-time: 2020-12-08T14:56:52.204000Z, duration: 8, exit-code: 0 python /user_builds/data-analysis-user-documentation/envs/latest/bin/sphinx-build -T -b json -d _build/doctrees-json -D language=en . _build/json Running Sphinx v1.8.5 loading translations [en]... done WARNING: extension 'sphinx_rtd_theme' has no setup() function; is it really a Sphinx extension module? making output directory... loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [json]: targets for 17 source files that are out of date updating environment: [] 0 added, 1 changed, 0 removed reading sources... [100%] citations looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 5%] candidate-frame-lists writing output... [ 11%] changes writing output... [ 17%] citations writing output... [ 23%] computing writing output... [ 29%] datafiles writing output... [ 35%] hdf5_virtualise/hdf5_virtualise writing output... [ 41%] index writing output... [ 47%] jhub writing output... [ 52%] karabo_bridge/cpp-client writing output... [ 58%] karabo_bridge/protocol writing output... [ 64%] karabo_bridge/py-client writing output... [ 70%] karabo_bridge/recorder writing output... [ 76%] online writing output... [ 82%] overview writing output... [ 88%] resources writing output... [ 94%] software writing output... [100%] usecases generating indices... genindex py-modindex writing additional pages... search copying images... [ 6%] _images/h5.png copying images... [ 12%] _images/trains_pulses.png copying images... [ 18%] _images/xas-tim-view.png copying images... [ 25%] _images/EXtra-foam-LPD_azimuthal_integration.png copying images... [ 31%] _images/FastCCDCorrelatorScene.png copying images... [ 37%] _images/EXtra-foam-ImageTool.png copying images... 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You can now process the JSON files in _build/json. /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. RemovedInSphinx20Warning) [rtd-command-info] start-time: 2020-12-08T14:56:55.850000Z, end-time: 2020-12-08T14:57:03.541000Z, duration: 7, exit-code: 0 python /user_builds/data-analysis-user-documentation/envs/latest/bin/sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.8.5 loading translations [en]... done WARNING: extension 'sphinx_rtd_theme' has no setup() function; is it really a Sphinx extension module? making output directory... loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: [] 0 added, 1 changed, 0 removed reading sources... [100%] citations looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... overview online datafiles hdf5_virtualise/hdf5_virtualise candidate-frame-lists computing jhub software karabo_bridge/py-client karabo_bridge/cpp-client karabo_bridge/recorder karabo_bridge/protocol usecases resources citations changes writing... done writing additional files... copying images... [ 6%] _images/trains_pulses.png copying images... [ 12%] _images/Level2_workstations.jpg copying images... [ 18%] _images/lpd2tile_gui.png copying images... [ 25%] _images/EXtra-foam_FastCCD_SCS.png copying images... [ 31%] _images/xas-tim-view.png copying images... [ 37%] _images/correlations.png copying images... [ 43%] _images/EXtra-foam-LPD_azimuthal_integration.png copying images... [ 50%] _images/max-jupyter_manual_token.png copying images... [ 56%] _images/FastCCDCorrelatorScene.png copying images... [ 62%] _images/XasTimProcessorScene.png copying images... [ 68%] _images/Level1_workstations.jpg copying images... [ 75%] _images/geoAssembler.png copying images... [ 81%] _images/h5.png copying images... [ 87%] _images/EXtra-foam-ROI.png copying images... [ 93%] _images/EXtra-foam-ImageTool.png copying images... [100%] _images/max-jhub-partitions.png copying downloadable files... [100%] _static/XHQ_Map.pdf copying static files... done copying extra files... done dumping object inventory... done build succeeded, 1 warning. The HTML page is in _build/localmedia. /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. RemovedInSphinx20Warning) /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages/readthedocs_ext/readthedocs.py:75: RemovedInSphinx20Warning: builder.css_files is deprecated. Please use app.add_stylesheet() instead. app.builder.css_files.insert(0, theme_css) [rtd-command-info] start-time: 2020-12-08T14:57:05.042000Z, end-time: 2020-12-08T14:57:12.728000Z, duration: 7, exit-code: 0 python /user_builds/data-analysis-user-documentation/envs/latest/bin/sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.8.5 loading translations [en]... done WARNING: extension 'sphinx_rtd_theme' has no setup() function; is it really a Sphinx extension module? making output directory... loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: [] 0 added, 1 changed, 0 removed reading sources... [100%] citations looking for now-outdated files... none found pickling environment... done checking consistency... done processing Userdocumentation.tex...index overview online datafiles hdf5_virtualise/hdf5_virtualise candidate-frame-lists computing jhub software karabo_bridge/py-client karabo_bridge/cpp-client karabo_bridge/recorder karabo_bridge/protocol usecases resources citations changes resolving references... writing... done copying images... [ 6%] _images/FastCCDCorrelatorScene.png copying images... [ 12%] _images/EXtra-foam-LPD_azimuthal_integration.png copying images... [ 18%] _images/EXtra-foam_FastCCD_SCS.png copying images... [ 25%] _images/EXtra-foam-ImageTool.png copying images... [ 31%] _images/h5.png copying images... [ 37%] _images/EXtra-foam-ROI.png copying images... [ 43%] _images/XasTimProcessorScene.png copying images... [ 50%] _images/Level1_workstations.jpg copying images... [ 56%] _images/trains_pulses.png copying images... [ 62%] _images/Level2_workstations.jpg copying images... [ 68%] _images/geoAssembler.png copying images... [ 75%] _images/max-jupyter_manual_token.png copying images... [ 81%] _images/xas-tim-view.png copying images... [ 87%] _images/max-jhub-partitions.png copying images... [ 93%] _images/lpd2tile_gui.png copying images... [100%] _images/correlations.png copying TeX support files... done build succeeded, 1 warning. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). /user_builds/data-analysis-user-documentation/envs/latest/lib/python3.4/site-packages/sphinx/websupport/__init__.py:25: RemovedInSphinx20Warning: sphinx.websupport module is now provided as sphinxcontrib-websupport. sphinx.websupport will be removed at Sphinx-2.0. Please use the package instead. RemovedInSphinx20Warning) [rtd-command-info] start-time: 2020-12-08T14:57:12.798000Z, end-time: 2020-12-08T14:57:20.232000Z, duration: 7, exit-code: 0 pdflatex -interaction=nonstopmode /user_builds/data-analysis-user-documentation/checkouts/latest/source/_build/latex/Userdocumentation.tex This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (/user_builds/data-analysis-user-documentation/checkouts/latest/source/_build/l atex/Userdocumentation.tex LaTeX2e <2014/05/01> Babel <3.9l> and hyphenation patterns for 2 languages loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2018/12/22 v1.8.3 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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LaTeX Warning: Hyper reference `citations:detectors-and-calibration' on page 67 undefined on input line 3959. [67] Overfull \vbox (132.9832pt too high) detected at line 4099 [68] [69] [70] Chapter 11. [71] [72] Underfull \hbox (badness 10000) in paragraph at lines 4186--4189 []\T1/ptm/m/n/10 Fangohr, Hans, et al. ^^PData Anal-y-sis Sup-port in Karabo at Eu-ro-pean XFEL^^Q Underfull \hbox (badness 10000) in paragraph at lines 4186--4189 \T1/ptm/m/n/10 ICALEPCS 2017. Avail-able on-line: [][]$http : / / accelconf . w eb . cern . ch / AccelConf / icalepcs2017 / doi / [73] [74] LaTeX Warning: Reference `karabo_bridge/py-client:module-karabo_bridge' on page 75 undefined on input line 4208. [75] No file Userdocumentation.ind. (./Userdocumentation.aux) Package rerunfilecheck Warning: File `Userdocumentation.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb> Output written on Userdocumentation.pdf (79 pages, 3930405 bytes). Transcript written on Userdocumentation.log. [rtd-command-info] start-time: 2020-12-08T14:57:20.308000Z, end-time: 2020-12-08T14:57:20.368000Z, duration: 0, exit-code: 0 makeindex -s python.ist Userdocumentation.idx This is makeindex, version 2.15 [TeX Live 2015/dev] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file Userdocumentation.idx....done (21 entries accepted, 0 rejected). Sorting entries....done (92 comparisons). Generating output file Userdocumentation.ind....done (57 lines written, 0 warnings). Output written in Userdocumentation.ind. Transcript written in Userdocumentation.ilg. [rtd-command-info] start-time: 2020-12-08T14:57:20.426000Z, end-time: 2020-12-08T14:57:27.480000Z, duration: 7, exit-code: 0 pdflatex -interaction=nonstopmode /user_builds/data-analysis-user-documentation/checkouts/latest/source/_build/latex/Userdocumentation.tex This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (/user_builds/data-analysis-user-documentation/checkouts/latest/source/_build/l atex/Userdocumentation.tex LaTeX2e <2014/05/01> Babel <3.9l> and hyphenation patterns for 2 languages loaded. 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Overfull \hbox (133.32541pt too wide) in paragraph at lines 233--234 [] [3] [4 <./trains_pulses.png>] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [5] [6] Chapter 2. Overfull \hbox (924.4787pt too wide) in paragraph at lines 412--413 [] LaTeX Warning: Float too large for page by 239.5024pt on input line 413. [7] [8 <./lpd2tile_gui.png>] [9] [10] Chapter 3. [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [13] [14 <./h5.png>] Underfull \hbox (badness 10000) in paragraph at lines 896--898 []|\T1/ptm/m/n/10 10.1038/s41467-018- Underfull \hbox (badness 10000) in paragraph at lines 910--912 []|\T1/ptm/m/n/10 10.1038/s41467-018- Underfull \hbox (badness 10000) in paragraph at lines 924--926 []|\T1/ptm/m/n/10 10.1038/s41597-019- [15] [16] [17] Overfull \vbox (1387.82329pt too high) has occurred while \output is active [18] [19] [20] Chapter 4. [21] [22] [23] [24] Chapter 5. [25] [26] [27] [28 <./Level1_workstations.jpg>] [29 <./Level2_wo rkstations.jpg>] [30] [31] [32] [33] [34] Chapter 6. Overfull \hbox (189.8773pt too wide) in paragraph at lines 2494--2495 | []| [35] [36 <./max-jhub-partitions.png>] [37] [38 <./max-jupyter_manual_token.png>] [39] Underfull \hbox (badness 10000) in paragraph at lines 2836--2837 []\T1/pcr/m/n/10 ssh -L 8000:localhost:8000 exflgateway -t ssh -L 8000:localhos t:8000 [40] [41] [42] Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 2953--2953 []\T1/ptm/m/it/10 endpoint\T1/ptm/m/n/10 , \T1/ptm/m/it/10 sock='REQ'\T1/ptm/m/ n/10 , \T1/ptm/m/it/10 ser='msgpack'\T1/ptm/m/n/10 , \T1/ptm/m/it/10 time-out=N one\T1/ptm/m/n/10 , \T1/ptm/m/it/10 con- [43] [44] [45] [46] [47] [48] Overfull \hbox (663.22504pt too wide) in paragraph at lines 3404--3405 [] LaTeX Warning: Float too large for page by 198.75769pt on input line 3405. Overfull \hbox (131.77739pt too wide) in paragraph at lines 3410--3411 [] Overfull \hbox (658.02417pt too wide) in paragraph at lines 3416--3417 [] LaTeX Warning: Float too large for page by 143.78525pt on input line 3417. [49] [50 <./EXtra-foam-LPD_azimuthal_integration.png>] [51 <./EXtra-foam-ImageT ool.png>] [52 <./EXtra-foam-ROI.png>] Overfull \hbox (675.36504pt too wide) in paragraph at lines 3518--3519 [] LaTeX Warning: Float too large for page by 22.0137pt on input line 3519. [53] [54 <./geoAssembler.png>] [55] [56] Chapter 8. Overfull \hbox (310.90964pt too wide) in paragraph at lines 3717--3718 [] [57] [58 <./FastCCDCorrelatorScene.png>] Overfull \hbox (979.46448pt too wide) in paragraph at lines 3774--3775 [] LaTeX Warning: Float too large for page by 349.32288pt on input line 3775. Overfull \hbox (645.18027pt too wide) in paragraph at lines 3805--3806 [] LaTeX Warning: Float too large for page by 42.15579pt on input line 3806. Overfull \hbox (971.90674pt too wide) in paragraph at lines 3834--3835 [] LaTeX Warning: Float too large for page by 167.87518pt on input line 3835. Overfull \hbox (444.92853pt too wide) in paragraph at lines 3849--3850 [] LaTeX Warning: Float too large for page by 49.71239pt on input line 3850. [59] [60 <./EXtra-foam_FastCCD_SCS.png>] [61 <./XasTimProcessorScene.png>] [62 <./xas-tim-view.png>] [63 <./correlations.png (PNG copy)>] [64] Chapter 9. [65] [66] Chapter 10. [67] Overfull \vbox (132.9832pt too high) detected at line 4099 [68] [69] [70] Chapter 11. [71] [72] Underfull \hbox (badness 10000) in paragraph at lines 4186--4189 []\T1/ptm/m/n/10 Fangohr, Hans, et al. ^^PData Anal-y-sis Sup-port in Karabo at Eu-ro-pean XFEL^^Q Underfull \hbox (badness 10000) in paragraph at lines 4186--4189 \T1/ptm/m/n/10 ICALEPCS 2017. Avail-able on-line: [][]$http : / / accelconf . w eb . cern . ch / AccelConf / icalepcs2017 / doi / [73] [74] [75] (./Userdocumentation.ind [76] Underfull \hbox (badness 10000) in paragraph at lines 38--40 []| \T1/pcr/m/n/10 -g , --geometry Underfull \hbox (badness 10000) in paragraph at lines 41--43 []| \T1/pcr/m/n/10 -l , --level \T1/ptm/m/n/10 , [77]) (./Userdocumentation.aux) Package rerunfilecheck Warning: File `Userdocumentation.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb> Output written on Userdocumentation.pdf (81 pages, 3945331 bytes). Transcript written on Userdocumentation.log. 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