Read the Docs build information Build id: 21341 Project: agipd-manual-mid Version: latest Commit: cd65a44541c93b999067463df20a93e10a83f6f2 Date: 2021-02-03T15:46:13.310587Z State: finished Success: True [rtd-command-info] start-time: 2021-02-03T15:46:34.366623Z, end-time: 2021-02-03T15:46:37.140790Z, duration: 2, exit-code: 0 git clone --no-single-branch --depth 50 http://git.xfel.eu/gitlab/detectors/agipd_mid.git . Cloning into '.'... [rtd-command-info] start-time: 2021-02-03T15:46:37.514122Z, end-time: 2021-02-03T15:46:37.680414Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at cd65a44 Update source/images/configtablemid.png, source/introduction.rst files Deleted source/images/configtablemid.PNG [rtd-command-info] start-time: 2021-02-03T15:46:37.819567Z, end-time: 2021-02-03T15:46:37.892916Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2021-02-03T15:46:38.982276Z, end-time: 2021-02-03T15:46:44.193664Z, duration: 5, exit-code: 0 python3.7 -mvirtualenv /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/envs/latest Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/envs/latest/bin/python3.7 Also creating executable in /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2021-02-03T15:46:44.335951Z, end-time: 2021-02-03T15:46:45.447358Z, duration: 1, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/envs/latest/bin/python -m pip install --upgrade --no-cache-dir pip Requirement already satisfied: pip in /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/envs/latest/lib/python3.7/site-packages (21.0.1) [rtd-command-info] start-time: 2021-02-03T15:46:45.585663Z, end-time: 2021-02-03T15:46:58.091933Z, duration: 12, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/envs/latest/bin/python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.4-py2.py3-none-any.whl (28 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting Jinja2>=2.9 Downloading Jinja2-2.11.3-py2.py3-none-any.whl (125 kB) Collecting requests Downloading requests-2.25.1-py2.py3-none-any.whl (61 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.1.0-py2.py3-none-any.whl (93 kB) Collecting six>=1.5 Downloading six-1.15.0-py2.py3-none-any.whl (10 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.9.0-py2.py3-none-any.whl (8.8 MB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting packaging Downloading packaging-20.9-py2.py3-none-any.whl (40 kB) Collecting pytz>=2015.7 Downloading pytz-2021.1-py2.py3-none-any.whl (510 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux2010_x86_64.whl (33 kB) Collecting idna<3,>=2.5 Downloading idna-2.10-py2.py3-none-any.whl (58 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.3-py2.py3-none-any.whl (137 kB) Collecting certifi>=2017.4.17 Downloading certifi-2020.12.5-py2.py3-none-any.whl (147 kB) Collecting chardet<5,>=3.0.2 Downloading chardet-4.0.0-py2.py3-none-any.whl (178 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.4-py2.py3-none-any.whl (89 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23755 sha256=192fdd1fda896b111e9631d3395ff4e59ad8e3a02b07870dcd8e401c19f2a303 Stored in directory: /tmp/pip-ephem-wheel-cache-ajius8n0/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491059 sha256=bb8769685b67c9f6139f820aa5a87e258a216c99d49746ba0f687362213170a4 Stored in directory: /tmp/pip-ephem-wheel-cache-ajius8n0/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, chardet, certifi, sphinxcontrib-websupport, snowballstemmer, six, setuptools, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock Attempting uninstall: setuptools Found existing installation: setuptools 53.0.0 Uninstalling setuptools-53.0.0: Successfully uninstalled setuptools-53.0.0 Successfully installed Jinja2-2.11.3 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.9.0 certifi-2020.12.5 chardet-4.0.0 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.9 pillow-5.4.1 pyparsing-2.4.7 pytz-2021.1 readthedocs-sphinx-ext-1.0.4 recommonmark-0.5.0 requests-2.25.1 setuptools-41.0.1 six-1.15.0 snowballstemmer-2.1.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.4 sphinxcontrib-websupport-1.2.4 urllib3-1.26.3 [rtd-command-info] start-time: 2021-02-03T15:46:59.214549Z, end-time: 2021-02-03T15:46:59.292898Z, duration: 0, exit-code: 0 cat source/conf.py # -*- coding: utf-8 -*- # # AGIPD User Manual documentation build configuration file, created by # sphinx-quickstart on Mon Apr 10 12:38:08 2017. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. import sys import os # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. #sys.path.insert(0, os.path.abspath('.')) # -- General configuration ------------------------------------------------ # If your documentation needs a minimal Sphinx version, state it here. #needs_sphinx = '1.0' import sys import os html_theme = 'sphinx_rtd_theme' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.autodoc', 'sphinx.ext.intersphinx', 'sphinx.ext.todo', 'sphinx.ext.mathjax', 'sphinx.ext.ifconfig', ] # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix of source filenames. source_suffix = '.rst' # The encoding of source files. #source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = u'AGIPD at MID User Manual' copyright = u'2017, European XFEL Detector Group' authors = u'Jolanta Sztuk-Dambietz, Natascha Raab' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. version = '0.4' # The full version, including alpha/beta/rc tags. release = '1.0 alpha' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. #language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: #today = '' # Else, today_fmt is used as the format for a strftime call. #today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. exclude_patterns = [] # The reST default role (used for this markup: `text`) to use for all # documents. #default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. #add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). #add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. show_authors = True # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. #modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. #keep_warnings = False # If true, references (figures) should be numbered and refered to by number numfig = True # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. html_theme = 'default' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. #html_theme_options = {} # Add any paths that contain custom themes here, relative to this directory. #html_theme_path = [] # The name for this set of Sphinx documents. If None, it defaults to # " v documentation". #html_title = None # A shorter title for the navigation bar. Default is the same as html_title. #html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. #html_logo = None # The name of an image file (within the static path) to use as favicon of the # docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. #html_favicon = None # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the documentation. #html_extra_path = [] # If not '', a 'Last updated on:' timestamp is inserted at every page bottom, # using the given strftime format. #html_last_updated_fmt = '%b %d, %Y' # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. #html_use_smartypants = True # Custom sidebar templates, maps document names to template names. #html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. #html_additional_pages = {} # If false, no module index is generated. #html_domain_indices = True # If false, no index is generated. #html_use_index = True # If true, the index is split into individual pages for each letter. #html_split_index = False # If true, links to the reST sources are added to the pages. #html_show_sourcelink = True # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. #html_show_sphinx = True # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. #html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. #html_use_opensearch = '' # This is the file name suffix for HTML files (e.g. ".xhtml"). #html_file_suffix = None # Output file base name for HTML help builder. htmlhelp_basename = 'SPBAGIPDUserManualdoc' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). #'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). #'pointsize': '10pt', # Additional stuff for the LaTeX preamble. #'preamble': '', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ ('index', 'MID-AGIPD_UserManual.tex', u'MID AGIPD User Manual Documentation', u'European XFEL Detector Group', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. #latex_logo = None # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. #latex_use_parts = False # If true, show page references after internal links. #latex_show_pagerefs = False # If true, show URL addresses after external links. #latex_show_urls = False # Documents to append as an appendix to all manuals. #latex_appendices = [] # If false, no module index is generated. #latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ ('index', 'agipdusermanual', u'AGIPD User Manual Documentation', [u'European XFEL Detector Group'], 1) ] # If true, show URL addresses after external links. #man_show_urls = False # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ ('index', 'MIDAGIPDUserManual', u'MIDAGIPD User Manual Documentation', u'European XFEL Detector Group', 'MIDAGIPDUserManual', 'One line description of project.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. #texinfo_appendices = [] # If false, no module index is generated. #texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. #texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. #texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'http://docs.python.org/': None} ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'http://rtd.xfel.eu/websupport' websupport2_static_url = '/static/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "media/", 'STATIC_URL': "/static/", 'PRODUCTION_DOMAIN': "rtd.xfel.eu", 'versions': [ ("latest", "/en/latest/"), ], 'downloads': [ ("pdf", "//rtd.xfel.eu/downloads/agipd-manual-mid/latest/pdf/"), ("html", "//rtd.xfel.eu/downloads/agipd-manual-mid/latest/htmlzip/"), ("epub", "//rtd.xfel.eu/downloads/agipd-manual-mid/latest/epub/"), ], 'subprojects': [ ], 'slug': 'agipd-manual-mid', 'name': u'AGIPD Manual MID', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'http://rtd.xfel.eu/docs/agipd-manual-mid/en/latest/', 'analytics_code': '', 'single_version': False, 'conf_py_path': '/source/', 'api_host': 'http://rtd.xfel.eu', 'github_user': 'None', 'proxied_api_host': '/_', 'github_repo': 'None', 'github_version': 'master', 'display_github': False, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': '', 'global_analytics_code': 'None', 'commit': 'cd65a445', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2021-02-03T15:46:59.433718Z, end-time: 2021-02-03T15:47:01.878039Z, duration: 2, exit-code: 0 python /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/envs/latest/bin/sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.8.5 loading translations [en]... done making output directory... loading intersphinx inventory from http://docs.python.org/objects.inv... intersphinx inventory has moved: http://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 6 source files that are out of date updating environment: 6 added, 0 changed, 0 removed reading sources... [ 16%] OCD_guidelines reading sources... [ 33%] index reading sources... [ 50%] introduction reading sources... [ 66%] starting_detector_mid reading sources... [ 83%] stopping_detector reading sources... 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unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to nonexisting document 'appendix' /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:52: WARNING: Figure caption must be a paragraph or empty comment. .. figure:: ./images/screenshots/AGIPD_overviewMID2020.png :width: 110 % The main overview scene for AGIPD /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:106: WARNING: Bullet list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:179: WARNING: Unknown directive type "coment". .. coment:: Currently the cooling cycle of the Julabo chiller is still leaky. Therefore in the beginning of a shift it should be checked in the rack room, whether the chiller displayes warning 40 (liquid level too low) and has to be refilled. This warning will not appear in Karabo, one has to go to the chiller to check! To refill the chiller the detector has to be warmed up. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:363: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:363: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:365: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:377: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:377: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:509: WARNING: Enumerated list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:542: WARNING: Literal block expected; none found. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:608: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:: WARNING: image file not readable: ./images/screenshots/AGIPD_overviewMID2020.png /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/stopping_detector.rst:73: WARNING: Title underline too short. Switching off Huber Unichiller -------------------------- /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/stopping_detector.rst:73: WARNING: Title underline too short. Switching off Huber Unichiller -------------------------- /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:57: WARNING: Inline emphasis start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:78: WARNING: Unknown directive type "comment". .. comment:: (see picture below) .. _u901: .. figure:: ./images/screenshots/mpod_u901_trip_.png /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:146: WARNING: Unknown directive type "coment". .. coment:: Automatic power procedure failed during powering of the asics -------------------------------------------------------------- If the automatic procedure fails and goes to the state 'unknown' when trying to switch on the asics: * check the error displayed by the procedure: * if the observed error is: Failed on task run_det because: Calling slot "start" not allowed in state "State.OFF" 1. Reinstante SPB_IRU_AGIPD1M1/MDL/FPGA_COMP. 2. Disconnect, reconnect and reset, 3. Configure the detector again 4. Power the Asics manually and push data /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:255: WARNING: Title underline too short. Verify with Rundeck, that the detector is not sending data __________________________________________ /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:255: WARNING: Title underline too short. Verify with Rundeck, that the detector is not sending data __________________________________________ /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:260: WARNING: Enumerated list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:261: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:262: WARNING: Enumerated list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:264: WARNING: Block quote ends without a blank line; unexpected unindent. looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 16%] OCD_guidelines writing output... [ 33%] index writing output... [ 50%] introduction writing output... [ 66%] starting_detector_mid writing output... [ 83%] stopping_detector writing output... [100%] troubleshooting /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:326: WARNING: undefined label: https://in.xfel.eu/readthedocs/docs/detector-support/en/latest/diagnosis/generic/cal_online_troubleshooting.html (if the link has no caption the label must precede a section header) /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:338: WARNING: undefined label: https://in.xfel.eu/readthedocs/docs/detector-support/en/latest/diagnosis/generic/cal_online_troubleshooting.html (if the link has no caption the label must precede a section header) generating indices... genindex writing additional pages... search copying images... [ 10%] ./images/AGIPDinSAXposition.jpg copying images... [ 20%] ./images/agipd_naming.png copying images... [ 30%] ./images/agipd_modules.png copying images... [ 40%] ./images/configtablemid.png copying images... [ 50%] ./images/screenshots/agipd_combined_control2020.png copying images... [ 60%] ./images/huber_wing_chiller.jpg copying images... [ 70%] ./images/Huber_display.jpg copying images... [ 80%] ./images/screenshots/agipd-power_23.02.png copying images... [ 90%] ./images/screenshots/Screenshot_h5view.png copying images... [100%] ./images/screenshots/Screenshot_tags_.png copying static files... done WARNING: html_static_path entry '/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/_static' does not exist copying readthedocs static files... done copying searchtools... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 57 warnings. The HTML pages are in _build/html. [rtd-command-info] start-time: 2021-02-03T15:47:02.072659Z, end-time: 2021-02-03T15:47:04.360693Z, duration: 2, exit-code: 0 python /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/envs/latest/bin/sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.8.5 loading translations [en]... done making output directory... loading intersphinx inventory from http://docs.python.org/objects.inv... intersphinx inventory has moved: http://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 6 added, 0 changed, 0 removed reading sources... [ 16%] OCD_guidelines reading sources... [ 33%] index reading sources... [ 50%] introduction reading sources... [ 66%] starting_detector_mid reading sources... [ 83%] stopping_detector reading sources... 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unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to nonexisting document 'appendix' /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:52: WARNING: Figure caption must be a paragraph or empty comment. .. figure:: ./images/screenshots/AGIPD_overviewMID2020.png :width: 110 % The main overview scene for AGIPD /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:106: WARNING: Bullet list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:179: WARNING: Unknown directive type "coment". .. coment:: Currently the cooling cycle of the Julabo chiller is still leaky. Therefore in the beginning of a shift it should be checked in the rack room, whether the chiller displayes warning 40 (liquid level too low) and has to be refilled. This warning will not appear in Karabo, one has to go to the chiller to check! To refill the chiller the detector has to be warmed up. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:363: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:363: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:365: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:377: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:377: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:509: WARNING: Enumerated list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:542: WARNING: Literal block expected; none found. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:608: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:: WARNING: image file not readable: ./images/screenshots/AGIPD_overviewMID2020.png /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/stopping_detector.rst:73: WARNING: Title underline too short. Switching off Huber Unichiller -------------------------- /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/stopping_detector.rst:73: WARNING: Title underline too short. Switching off Huber Unichiller -------------------------- /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:57: WARNING: Inline emphasis start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:78: WARNING: Unknown directive type "comment". .. comment:: (see picture below) .. _u901: .. figure:: ./images/screenshots/mpod_u901_trip_.png /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:146: WARNING: Unknown directive type "coment". .. coment:: Automatic power procedure failed during powering of the asics -------------------------------------------------------------- If the automatic procedure fails and goes to the state 'unknown' when trying to switch on the asics: * check the error displayed by the procedure: * if the observed error is: Failed on task run_det because: Calling slot "start" not allowed in state "State.OFF" 1. Reinstante SPB_IRU_AGIPD1M1/MDL/FPGA_COMP. 2. Disconnect, reconnect and reset, 3. Configure the detector again 4. Power the Asics manually and push data /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:255: WARNING: Title underline too short. Verify with Rundeck, that the detector is not sending data __________________________________________ /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:255: WARNING: Title underline too short. Verify with Rundeck, that the detector is not sending data __________________________________________ /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:260: WARNING: Enumerated list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:261: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:262: WARNING: Enumerated list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:264: WARNING: Block quote ends without a blank line; unexpected unindent. looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done assembling single document... introduction starting_detector_mid stopping_detector troubleshooting OCD_guidelines /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:326: WARNING: undefined label: https://in.xfel.eu/readthedocs/docs/detector-support/en/latest/diagnosis/generic/cal_online_troubleshooting.html (if the link has no caption the label must precede a section header) /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:338: WARNING: undefined label: https://in.xfel.eu/readthedocs/docs/detector-support/en/latest/diagnosis/generic/cal_online_troubleshooting.html (if the link has no caption the label must precede a section header) writing... done writing additional files... copying images... 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[rtd-command-info] start-time: 2021-02-03T15:47:04.572276Z, end-time: 2021-02-03T15:47:06.782065Z, duration: 2, exit-code: 0 python /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/envs/latest/bin/sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.8.5 loading translations [en]... done making output directory... loading intersphinx inventory from http://docs.python.org/objects.inv... intersphinx inventory has moved: http://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 6 added, 0 changed, 0 removed reading sources... [ 16%] OCD_guidelines reading sources... [ 33%] index reading sources... [ 50%] introduction reading sources... [ 66%] starting_detector_mid reading sources... [ 83%] stopping_detector reading sources... 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unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to nonexisting document 'appendix' /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:52: WARNING: Figure caption must be a paragraph or empty comment. .. figure:: ./images/screenshots/AGIPD_overviewMID2020.png :width: 110 % The main overview scene for AGIPD /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:106: WARNING: Bullet list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:179: WARNING: Unknown directive type "coment". .. coment:: Currently the cooling cycle of the Julabo chiller is still leaky. Therefore in the beginning of a shift it should be checked in the rack room, whether the chiller displayes warning 40 (liquid level too low) and has to be refilled. This warning will not appear in Karabo, one has to go to the chiller to check! To refill the chiller the detector has to be warmed up. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:363: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:363: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:365: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:377: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:377: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:509: WARNING: Enumerated list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:542: WARNING: Literal block expected; none found. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:608: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:: WARNING: image file not readable: ./images/screenshots/AGIPD_overviewMID2020.png /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/stopping_detector.rst:73: WARNING: Title underline too short. Switching off Huber Unichiller -------------------------- /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/stopping_detector.rst:73: WARNING: Title underline too short. Switching off Huber Unichiller -------------------------- /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:57: WARNING: Inline emphasis start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:78: WARNING: Unknown directive type "comment". .. comment:: (see picture below) .. _u901: .. figure:: ./images/screenshots/mpod_u901_trip_.png /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:146: WARNING: Unknown directive type "coment". .. coment:: Automatic power procedure failed during powering of the asics -------------------------------------------------------------- If the automatic procedure fails and goes to the state 'unknown' when trying to switch on the asics: * check the error displayed by the procedure: * if the observed error is: Failed on task run_det because: Calling slot "start" not allowed in state "State.OFF" 1. Reinstante SPB_IRU_AGIPD1M1/MDL/FPGA_COMP. 2. Disconnect, reconnect and reset, 3. Configure the detector again 4. Power the Asics manually and push data /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:255: WARNING: Title underline too short. Verify with Rundeck, that the detector is not sending data __________________________________________ /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:255: WARNING: Title underline too short. Verify with Rundeck, that the detector is not sending data __________________________________________ /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:260: WARNING: Enumerated list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:261: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:262: WARNING: Enumerated list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:264: WARNING: Block quote ends without a blank line; unexpected unindent. looking for now-outdated files... none found pickling environment... done checking consistency... done processing MID-AGIPD_UserManual.tex...index introduction starting_detector_mid stopping_detector troubleshooting OCD_guidelines resolving references... /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:326: WARNING: undefined label: https://in.xfel.eu/readthedocs/docs/detector-support/en/latest/diagnosis/generic/cal_online_troubleshooting.html (if the link has no caption the label must precede a section header) /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:338: WARNING: undefined label: https://in.xfel.eu/readthedocs/docs/detector-support/en/latest/diagnosis/generic/cal_online_troubleshooting.html (if the link has no caption the label must precede a section header) writing... done copying images... [ 10%] ./images/AGIPDinSAXposition.jpg copying images... [ 20%] ./images/agipd_naming.png copying images... [ 30%] ./images/agipd_modules.png copying images... [ 40%] ./images/configtablemid.png copying images... [ 50%] ./images/screenshots/agipd_combined_control2020.png copying images... [ 60%] ./images/huber_wing_chiller.jpg copying images... [ 70%] ./images/Huber_display.jpg copying images... [ 80%] ./images/screenshots/agipd-power_23.02.png copying images... [ 90%] ./images/screenshots/Screenshot_h5view.png copying images... [100%] ./images/screenshots/Screenshot_tags_.png copying TeX support files... done build succeeded, 56 warnings. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). [rtd-command-info] start-time: 2021-02-03T15:47:08.353664Z, end-time: 2021-02-03T15:47:08.426633Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2021-02-03T15:47:08.565223Z, end-time: 2021-02-03T15:47:14.252412Z, duration: 5, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=agipd-manual-mid -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="agipd-manual-mid" "MID-AGIPD_UserManual.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./MID-AGIPD_UserManual.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. 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LaTeX Warning: Hyper reference `troubleshooting:cooling-issues' on page 38 unde fined on input line 1874. [38] Chapter 6. [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 1--2146 [][][]$\T1/ptm/m/n/10 https : / / in . xfel . eu / readthedocs / docs / detecto r-[]support / en / latest / diagnosis / generic / cal _ online _ troubleshootin g . No file agipd-manual-mid.ind. [41] (./agipd-manual-mid.aux) Package rerunfilecheck Warning: File `agipd-manual-mid.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on agipd-manual-mid.pdf (45 pages, 4250004 bytes). Transcript written on agipd-manual-mid.log. 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(./agipd-manual-mid.ind) [41] (./agipd-manual-mid.aux) LaTeX Warning: There were undefined references. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on agipd-manual-mid.pdf (45 pages, 4257068 bytes). Transcript written on agipd-manual-mid.log. Latexmk: Index file 'agipd-manual-mid.idx' was written Latexmk: Missing input file: '{./images/screenshots/AGIPD_overviewMID2020}.png' from line 'LaTeX Warning: File `{./images/screenshots/AGIPD_overviewMID2020}.png' not found on input line 415.' 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unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to nonexisting document 'appendix' /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:52: WARNING: Figure caption must be a paragraph or empty comment. .. figure:: ./images/screenshots/AGIPD_overviewMID2020.png :width: 110 % The main overview scene for AGIPD /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:106: WARNING: Bullet list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:179: WARNING: Unknown directive type "coment". .. coment:: Currently the cooling cycle of the Julabo chiller is still leaky. Therefore in the beginning of a shift it should be checked in the rack room, whether the chiller displayes warning 40 (liquid level too low) and has to be refilled. This warning will not appear in Karabo, one has to go to the chiller to check! To refill the chiller the detector has to be warmed up. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:363: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:363: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:365: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:377: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:377: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:509: WARNING: Enumerated list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:542: WARNING: Literal block expected; none found. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:608: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:: WARNING: image file not readable: ./images/screenshots/AGIPD_overviewMID2020.png /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/stopping_detector.rst:73: WARNING: Title underline too short. Switching off Huber Unichiller -------------------------- /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/stopping_detector.rst:73: WARNING: Title underline too short. Switching off Huber Unichiller -------------------------- /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:57: WARNING: Inline emphasis start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:78: WARNING: Unknown directive type "comment". .. comment:: (see picture below) .. _u901: .. figure:: ./images/screenshots/mpod_u901_trip_.png /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:146: WARNING: Unknown directive type "coment". .. coment:: Automatic power procedure failed during powering of the asics -------------------------------------------------------------- If the automatic procedure fails and goes to the state 'unknown' when trying to switch on the asics: * check the error displayed by the procedure: * if the observed error is: Failed on task run_det because: Calling slot "start" not allowed in state "State.OFF" 1. Reinstante SPB_IRU_AGIPD1M1/MDL/FPGA_COMP. 2. Disconnect, reconnect and reset, 3. Configure the detector again 4. Power the Asics manually and push data /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:255: WARNING: Title underline too short. Verify with Rundeck, that the detector is not sending data __________________________________________ /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:255: WARNING: Title underline too short. Verify with Rundeck, that the detector is not sending data __________________________________________ /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:260: WARNING: Enumerated list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:261: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:262: WARNING: Enumerated list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:264: WARNING: Block quote ends without a blank line; unexpected unindent. looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... 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