Read the Docs build information
Build id: 21424
Project: european-xfel-offline-calibration
Version: latest
Commit: 25f50c9f2ae20fb9c78602592ae3af3f03de7f27
Date: 2021-03-08T10:57:17.254741Z
State: finished
Success: False


[rtd-command-info] start-time: 2021-03-08T10:57:18.267279Z, end-time: 2021-03-08T10:57:40.281938Z, duration: 22, exit-code: 0
git clone --no-single-branch --depth 50 http://git.xfel.eu/gitlab/detectors/pycalibration.git .
Cloning into '.'...

[rtd-command-info] start-time: 2021-03-08T10:57:40.668910Z, end-time: 2021-03-08T10:57:41.078271Z, duration: 0, exit-code: 0
git checkout --force origin/doc/run_rtd
Note: checking out 'origin/doc/run_rtd'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 25f50c9 add mock up for imports

[rtd-command-info] start-time: 2021-03-08T10:57:41.209695Z, end-time: 2021-03-08T10:57:41.292799Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2021-03-08T10:57:42.868403Z, end-time: 2021-03-08T10:57:47.969115Z, duration: 5, exit-code: 0
python3.7 -mvirtualenv --system-site-packages /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest
Using base prefix '/home/docs/.pyenv/versions/3.7.3'
New python executable in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/bin/python3.7
Also creating executable in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2021-03-08T10:57:48.108029Z, end-time: 2021-03-08T10:57:49.201956Z, duration: 1, exit-code: 0
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/bin/python -m pip install --upgrade --no-cache-dir pip
Requirement already satisfied: pip in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages (21.0.1)

[rtd-command-info] start-time: 2021-03-08T10:57:49.335096Z, end-time: 2021-03-08T10:58:01.591764Z, duration: 12, exit-code: 0
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/bin/python -m pip install --upgrade --no-cache-dir -I Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1
Collecting Pygments==2.3.1
  Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB)
Collecting setuptools==41.0.1
  Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB)
Collecting docutils==0.14
  Downloading docutils-0.14-py3-none-any.whl (543 kB)
Collecting mock==1.0.1
  Downloading mock-1.0.1.zip (861 kB)
Collecting pillow==5.4.1
  Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB)
Collecting alabaster!=0.7.5,<0.8,>=0.7
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Collecting commonmark==0.8.1
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Collecting recommonmark==0.5.0
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Collecting sphinx<2
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Collecting future
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Collecting Jinja2>=2.9
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Collecting requests
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Collecting six>=1.5
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Collecting babel!=2.0,>=1.3
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Collecting packaging
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Collecting snowballstemmer>=1.1
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Collecting sphinxcontrib-websupport
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Collecting pytz>=2015.7
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Collecting MarkupSafe>=0.23
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Collecting certifi>=2017.4.17
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Collecting urllib3<1.27,>=1.21.1
  Downloading urllib3-1.26.3-py2.py3-none-any.whl (137 kB)
Collecting idna<3,>=2.5
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Collecting chardet<5,>=3.0.2
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Collecting pyparsing>=2.0.2
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Collecting sphinxcontrib-serializinghtml
  Downloading sphinxcontrib_serializinghtml-1.1.4-py2.py3-none-any.whl (89 kB)
Building wheels for collected packages: mock, future
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23755 sha256=ba4d248664073190423a96134027960d9835802e5a98f51fcc8ed7a82cedb256
  Stored in directory: /tmp/pip-ephem-wheel-cache-pckhic0s/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1
  Building wheel for future (setup.py): started
  Building wheel for future (setup.py): finished with status 'done'
  Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491059 sha256=a7d609cba513b8124784e8c4237704c9f78bbf3021a1f221eac6d7cfbe8c8931
  Stored in directory: /tmp/pip-ephem-wheel-cache-pckhic0s/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0
Successfully built mock future
Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, chardet, certifi, sphinxcontrib-websupport, snowballstemmer, six, setuptools, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock
Successfully installed Jinja2-2.11.3 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.9.0 certifi-2020.12.5 chardet-4.0.0 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.9 pillow-5.4.1 pyparsing-2.4.7 pytz-2021.1 readthedocs-sphinx-ext-1.0.4 recommonmark-0.5.0 requests-2.25.1 setuptools-54.1.1 six-1.15.0 snowballstemmer-2.1.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.4 sphinxcontrib-websupport-1.2.4 urllib3-1.26.3

[rtd-command-info] start-time: 2021-03-08T10:58:01.728354Z, end-time: 2021-03-08T10:58:04.370321Z, duration: 2, exit-code: 0
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/bin/python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt
Collecting Cython==0.29.21
  Downloading Cython-0.29.21-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB)
Installing collected packages: Cython
Successfully installed Cython-0.29.21

[rtd-command-info] start-time: 2021-03-08T10:58:04.504216Z, end-time: 2021-03-08T10:58:05.094310Z, duration: 0, exit-code: 1
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/bin/python /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/setup.py install --force
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/cal_tools
copying cal_tools/cal_tools/metrology.py -> build/lib.linux-x86_64-3.7/cal_tools
copying cal_tools/cal_tools/__init__.py -> build/lib.linux-x86_64-3.7/cal_tools
copying cal_tools/cal_tools/agipdutils.py -> build/lib.linux-x86_64-3.7/cal_tools
copying cal_tools/cal_tools/agipdutils_ff.py -> build/lib.linux-x86_64-3.7/cal_tools
copying cal_tools/cal_tools/step_timing.py -> build/lib.linux-x86_64-3.7/cal_tools
copying cal_tools/cal_tools/pnccdlib.py -> build/lib.linux-x86_64-3.7/cal_tools
copying cal_tools/cal_tools/mdc_config.py -> build/lib.linux-x86_64-3.7/cal_tools
copying cal_tools/cal_tools/agipdlib.py -> build/lib.linux-x86_64-3.7/cal_tools
copying cal_tools/cal_tools/tools.py -> build/lib.linux-x86_64-3.7/cal_tools
copying cal_tools/cal_tools/enums.py -> build/lib.linux-x86_64-3.7/cal_tools
copying cal_tools/cal_tools/plotting.py -> build/lib.linux-x86_64-3.7/cal_tools
copying cal_tools/cal_tools/ana_tools.py -> build/lib.linux-x86_64-3.7/cal_tools
copying cal_tools/cal_tools/dssclib.py -> build/lib.linux-x86_64-3.7/cal_tools
copying cal_tools/cal_tools/lpdlib.py -> build/lib.linux-x86_64-3.7/cal_tools
creating build/lib.linux-x86_64-3.7/xfel_calibrate
copying xfel_calibrate/__init__.py -> build/lib.linux-x86_64-3.7/xfel_calibrate
copying xfel_calibrate/VERSION.py -> build/lib.linux-x86_64-3.7/xfel_calibrate
copying xfel_calibrate/settings.py -> build/lib.linux-x86_64-3.7/xfel_calibrate
copying xfel_calibrate/notebooks.py -> build/lib.linux-x86_64-3.7/xfel_calibrate
copying xfel_calibrate/calibrate.py -> build/lib.linux-x86_64-3.7/xfel_calibrate
copying xfel_calibrate/finalize.py -> build/lib.linux-x86_64-3.7/xfel_calibrate
creating build/lib.linux-x86_64-3.7/xfel_calibrate/bin
copying xfel_calibrate/bin/slurm_calibrate.sh -> build/lib.linux-x86_64-3.7/xfel_calibrate/bin
copying xfel_calibrate/bin/pre-commit-diff.sh -> build/lib.linux-x86_64-3.7/xfel_calibrate/bin
copying xfel_calibrate/titlepage.tmpl -> build/lib.linux-x86_64-3.7/xfel_calibrate
copying xfel_calibrate/xfel.pdf -> build/lib.linux-x86_64-3.7/xfel_calibrate
creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks
creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD
copying xfel_calibrate/notebooks/AGIPD/Characterize_AGIPD_Gain_Darks_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD
creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/generic
copying xfel_calibrate/notebooks/generic/overallmodules_Darks_Summary_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/generic
copying xfel_calibrate/notebooks/AGIPD/Chracterize_AGIPD_Gain_PC_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD
copying xfel_calibrate/notebooks/AGIPD/Characterize_AGIPD_Gain_FlatFields_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD
copying xfel_calibrate/notebooks/AGIPD/Characterize_AGIPD_Gain_FlatFields_Summary.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD
copying xfel_calibrate/notebooks/AGIPD/AGIPD_Correct_and_Verify.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD
copying xfel_calibrate/notebooks/AGIPD/AGIPD_Correct_and_Verify_Summary_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD
copying xfel_calibrate/notebooks/AGIPD/AGIPD_Retrieve_Constants_Precorrection.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD
copying xfel_calibrate/notebooks/AGIPD/AGIPD_Characterize_Gain_Combine_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD
copying xfel_calibrate/notebooks/AGIPD/AGIPD_FF_Histogramming.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD
creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD/playground
copying xfel_calibrate/notebooks/AGIPD/playground/AGIPD_SingleM_test_Dark.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD/playground
creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/LPD
copying xfel_calibrate/notebooks/LPD/LPDChar_Darks_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/LPD
copying xfel_calibrate/notebooks/LPD/Characterize_LPD_GAIN_CI_per_pixel_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/LPD
copying xfel_calibrate/notebooks/LPD/LPD_FlatField_Radial_per_pixel_CI_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/LPD
copying xfel_calibrate/notebooks/LPD/LPD_Correct_and_Verify.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/LPD
copying xfel_calibrate/notebooks/LPD/Mine_RadIntensity_vs_XGM_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/LPD
creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/pnCCD
copying xfel_calibrate/notebooks/pnCCD/Characterize_pnCCD_Dark_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/pnCCD
copying xfel_calibrate/notebooks/pnCCD/Characterize_pnCCD_Gain.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/pnCCD
copying xfel_calibrate/notebooks/pnCCD/Correct_pnCCD_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/pnCCD
copying xfel_calibrate/notebooks/generic/DB_Constants_to_HDF5_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/generic
copying xfel_calibrate/notebooks/generic/PlotFromCalDB_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/generic
copying xfel_calibrate/notebooks/generic/PlotFromCalDB_Summary_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/generic
creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/Tutorial
copying xfel_calibrate/notebooks/Tutorial/calversion.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/Tutorial
creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/FastCCD
copying xfel_calibrate/notebooks/FastCCD/Characterize_Darks_NewDAQ_FastCCD_NBC_New_Common_Mode.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/FastCCD
copying xfel_calibrate/notebooks/FastCCD/CorrectionNotebook_NewDAQ_FastCCD_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/FastCCD
creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/Jungfrau
copying xfel_calibrate/notebooks/Jungfrau/Jungfrau_dark_analysis_all_gains_burst_mode_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/Jungfrau
copying xfel_calibrate/notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/Jungfrau
creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/ePix100
copying xfel_calibrate/notebooks/ePix100/Characterize_Darks_ePix100_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/ePix100
copying xfel_calibrate/notebooks/ePix100/Correction_ePix100_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/ePix100
creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/ePix10K
copying xfel_calibrate/notebooks/ePix10K/Characterize_Darks_ePix10K_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/ePix10K
copying xfel_calibrate/notebooks/ePix10K/Correction_ePix10K_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/ePix10K
creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/DSSC
copying xfel_calibrate/notebooks/DSSC/Characterize_DSSC_Darks_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/DSSC
copying xfel_calibrate/notebooks/DSSC/DSSC_Correct_and_Verify.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/DSSC
running build_ext
error: each element of 'ext_modules' option must be an Extension instance or 2-tuple