Read the Docs build information Build id: 21433 Project: european-xfel-offline-calibration Version: latest Commit: 85b9fa3141062b9d766eba3eedc2b1714d88c89a Date: 2021-03-08T11:24:42.091147Z State: finished Success: False [rtd-command-info] start-time: 2021-03-08T11:24:43.068330Z, end-time: 2021-03-08T11:25:05.004943Z, duration: 21, exit-code: 0 git clone --no-single-branch --depth 50 http://git.xfel.eu/gitlab/detectors/pycalibration.git . Cloning into '.'... 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[rtd-command-info] start-time: 2021-03-08T11:25:05.397545Z, end-time: 2021-03-08T11:25:06.531223Z, duration: 1, exit-code: 0 git checkout --force origin/doc/run_rtd Note: checking out 'origin/doc/run_rtd'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 85b9fa3 add mock up for imports [rtd-command-info] start-time: 2021-03-08T11:25:06.675296Z, end-time: 2021-03-08T11:25:06.760481Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2021-03-08T11:25:08.509702Z, end-time: 2021-03-08T11:25:13.997522Z, duration: 5, exit-code: 0 python3.7 -mvirtualenv --system-site-packages /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/bin/python3.7 Also creating executable in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2021-03-08T11:25:14.143932Z, end-time: 2021-03-08T11:25:15.300335Z, duration: 1, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/bin/python -m pip install --upgrade --no-cache-dir pip Requirement already satisfied: pip in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages (21.0.1) [rtd-command-info] start-time: 2021-03-08T11:25:15.441838Z, end-time: 2021-03-08T11:25:28.166959Z, duration: 12, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/bin/python -m pip install --upgrade --no-cache-dir -I Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.4-py2.py3-none-any.whl (28 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting requests Downloading requests-2.25.1-py2.py3-none-any.whl (61 kB) Collecting Jinja2>=2.9 Downloading Jinja2-2.11.3-py2.py3-none-any.whl (125 kB) Collecting six>=1.5 Downloading six-1.15.0-py2.py3-none-any.whl (10 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.1.0-py2.py3-none-any.whl (93 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.9.0-py2.py3-none-any.whl (8.8 MB) Collecting packaging Downloading packaging-20.9-py2.py3-none-any.whl (40 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting pytz>=2015.7 Downloading pytz-2021.1-py2.py3-none-any.whl (510 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux2010_x86_64.whl (33 kB) Collecting certifi>=2017.4.17 Downloading certifi-2020.12.5-py2.py3-none-any.whl (147 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.3-py2.py3-none-any.whl (137 kB) Collecting idna<3,>=2.5 Downloading idna-2.10-py2.py3-none-any.whl (58 kB) Collecting chardet<5,>=3.0.2 Downloading chardet-4.0.0-py2.py3-none-any.whl (178 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.4-py2.py3-none-any.whl (89 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23755 sha256=a43c85fe70cb5a8ab3fa1ca250350f8e3b7d21e8bf9a28d3ecee3498987a4d7d Stored in directory: /tmp/pip-ephem-wheel-cache-vna6c8fv/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491059 sha256=2d203e4e2c7c4310f2a0bdadd573c6466bb32c2d16db5585e028520118b2144b Stored in directory: /tmp/pip-ephem-wheel-cache-vna6c8fv/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, chardet, certifi, sphinxcontrib-websupport, snowballstemmer, six, setuptools, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock Successfully installed Jinja2-2.11.3 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.9.0 certifi-2020.12.5 chardet-4.0.0 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.9 pillow-5.4.1 pyparsing-2.4.7 pytz-2021.1 readthedocs-sphinx-ext-1.0.4 recommonmark-0.5.0 requests-2.25.1 setuptools-54.1.1 six-1.15.0 snowballstemmer-2.1.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.4 sphinxcontrib-websupport-1.2.4 urllib3-1.26.3 [rtd-command-info] start-time: 2021-03-08T11:25:28.315502Z, end-time: 2021-03-08T11:25:30.942981Z, duration: 2, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/bin/python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Collecting Cython==0.29.21 Downloading Cython-0.29.21-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Installing collected packages: Cython Successfully installed Cython-0.29.21 [rtd-command-info] start-time: 2021-03-08T11:25:31.074542Z, end-time: 2021-03-08T11:25:34.781635Z, duration: 3, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/bin/python ./setup.py install --force running install running build running build_py creating build creating build/lib.linux-x86_64-3.7 creating build/lib.linux-x86_64-3.7/cal_tools copying cal_tools/cal_tools/metrology.py -> build/lib.linux-x86_64-3.7/cal_tools copying cal_tools/cal_tools/__init__.py -> build/lib.linux-x86_64-3.7/cal_tools copying cal_tools/cal_tools/agipdutils.py -> build/lib.linux-x86_64-3.7/cal_tools copying cal_tools/cal_tools/agipdutils_ff.py -> build/lib.linux-x86_64-3.7/cal_tools copying cal_tools/cal_tools/step_timing.py -> build/lib.linux-x86_64-3.7/cal_tools copying cal_tools/cal_tools/pnccdlib.py -> build/lib.linux-x86_64-3.7/cal_tools copying cal_tools/cal_tools/mdc_config.py -> build/lib.linux-x86_64-3.7/cal_tools copying cal_tools/cal_tools/agipdlib.py -> build/lib.linux-x86_64-3.7/cal_tools copying cal_tools/cal_tools/tools.py -> build/lib.linux-x86_64-3.7/cal_tools copying cal_tools/cal_tools/enums.py -> build/lib.linux-x86_64-3.7/cal_tools copying cal_tools/cal_tools/plotting.py -> build/lib.linux-x86_64-3.7/cal_tools copying cal_tools/cal_tools/ana_tools.py -> build/lib.linux-x86_64-3.7/cal_tools copying cal_tools/cal_tools/dssclib.py -> build/lib.linux-x86_64-3.7/cal_tools copying cal_tools/cal_tools/lpdlib.py -> build/lib.linux-x86_64-3.7/cal_tools creating build/lib.linux-x86_64-3.7/xfel_calibrate copying xfel_calibrate/__init__.py -> build/lib.linux-x86_64-3.7/xfel_calibrate copying xfel_calibrate/VERSION.py -> build/lib.linux-x86_64-3.7/xfel_calibrate copying xfel_calibrate/settings.py -> build/lib.linux-x86_64-3.7/xfel_calibrate copying xfel_calibrate/notebooks.py -> build/lib.linux-x86_64-3.7/xfel_calibrate copying xfel_calibrate/calibrate.py -> build/lib.linux-x86_64-3.7/xfel_calibrate copying xfel_calibrate/finalize.py -> build/lib.linux-x86_64-3.7/xfel_calibrate creating build/lib.linux-x86_64-3.7/xfel_calibrate/bin copying xfel_calibrate/bin/slurm_calibrate.sh -> build/lib.linux-x86_64-3.7/xfel_calibrate/bin copying xfel_calibrate/bin/pre-commit-diff.sh -> build/lib.linux-x86_64-3.7/xfel_calibrate/bin copying xfel_calibrate/titlepage.tmpl -> build/lib.linux-x86_64-3.7/xfel_calibrate copying xfel_calibrate/xfel.pdf -> build/lib.linux-x86_64-3.7/xfel_calibrate creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD copying xfel_calibrate/notebooks/AGIPD/Characterize_AGIPD_Gain_Darks_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/generic copying xfel_calibrate/notebooks/generic/overallmodules_Darks_Summary_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/generic copying xfel_calibrate/notebooks/AGIPD/Chracterize_AGIPD_Gain_PC_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD copying xfel_calibrate/notebooks/AGIPD/Characterize_AGIPD_Gain_FlatFields_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD copying xfel_calibrate/notebooks/AGIPD/Characterize_AGIPD_Gain_FlatFields_Summary.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD copying xfel_calibrate/notebooks/AGIPD/AGIPD_Correct_and_Verify.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD copying xfel_calibrate/notebooks/AGIPD/AGIPD_Correct_and_Verify_Summary_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD copying xfel_calibrate/notebooks/AGIPD/AGIPD_Retrieve_Constants_Precorrection.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD copying xfel_calibrate/notebooks/AGIPD/AGIPD_Characterize_Gain_Combine_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD copying xfel_calibrate/notebooks/AGIPD/AGIPD_FF_Histogramming.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD/playground copying xfel_calibrate/notebooks/AGIPD/playground/AGIPD_SingleM_test_Dark.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD/playground creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/LPD copying xfel_calibrate/notebooks/LPD/LPDChar_Darks_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/LPD copying xfel_calibrate/notebooks/LPD/Characterize_LPD_GAIN_CI_per_pixel_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/LPD copying xfel_calibrate/notebooks/LPD/LPD_FlatField_Radial_per_pixel_CI_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/LPD copying xfel_calibrate/notebooks/LPD/LPD_Correct_and_Verify.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/LPD copying xfel_calibrate/notebooks/LPD/Mine_RadIntensity_vs_XGM_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/LPD creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/pnCCD copying xfel_calibrate/notebooks/pnCCD/Characterize_pnCCD_Dark_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/pnCCD copying xfel_calibrate/notebooks/pnCCD/Characterize_pnCCD_Gain.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/pnCCD copying xfel_calibrate/notebooks/pnCCD/Correct_pnCCD_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/pnCCD copying xfel_calibrate/notebooks/generic/DB_Constants_to_HDF5_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/generic copying xfel_calibrate/notebooks/generic/PlotFromCalDB_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/generic copying xfel_calibrate/notebooks/generic/PlotFromCalDB_Summary_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/generic creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/Tutorial copying xfel_calibrate/notebooks/Tutorial/calversion.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/Tutorial creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/FastCCD copying xfel_calibrate/notebooks/FastCCD/Characterize_Darks_NewDAQ_FastCCD_NBC_New_Common_Mode.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/FastCCD copying xfel_calibrate/notebooks/FastCCD/CorrectionNotebook_NewDAQ_FastCCD_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/FastCCD creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/Jungfrau copying xfel_calibrate/notebooks/Jungfrau/Jungfrau_dark_analysis_all_gains_burst_mode_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/Jungfrau copying xfel_calibrate/notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/Jungfrau creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/ePix100 copying xfel_calibrate/notebooks/ePix100/Characterize_Darks_ePix100_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/ePix100 copying xfel_calibrate/notebooks/ePix100/Correction_ePix100_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/ePix100 creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/ePix10K copying xfel_calibrate/notebooks/ePix10K/Characterize_Darks_ePix10K_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/ePix10K copying xfel_calibrate/notebooks/ePix10K/Correction_ePix10K_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/ePix10K creating build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/DSSC copying xfel_calibrate/notebooks/DSSC/Characterize_DSSC_Darks_NBC.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/DSSC copying xfel_calibrate/notebooks/DSSC/DSSC_Correct_and_Verify.ipynb -> build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/DSSC running build_ext cythoning cal_tools/cython/agipdalgs.pyx to cal_tools/cython/agipdalgs.c building 'cal_tools.cython.agipdalgs' extension creating build/temp.linux-x86_64-3.7 creating build/temp.linux-x86_64-3.7/cal_tools creating build/temp.linux-x86_64-3.7/cal_tools/cython gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/docs/.pyenv/versions/3.7.3/lib/python3.7/site-packages/numpy/core/include -I/home/docs/.pyenv/versions/3.7.3/include/python3.7m -c cal_tools/cython/agipdalgs.c -o build/temp.linux-x86_64-3.7/cal_tools/cython/agipdalgs.o -fopenmp -march=native In file included from /home/docs/.pyenv/versions/3.7.3/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0, from /home/docs/.pyenv/versions/3.7.3/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /home/docs/.pyenv/versions/3.7.3/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from cal_tools/cython/agipdalgs.c:610: /home/docs/.pyenv/versions/3.7.3/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ creating build/lib.linux-x86_64-3.7/cal_tools/cython gcc -pthread -shared -L/home/docs/.pyenv/versions/3.7.3/lib -L/home/docs/.pyenv/versions/3.7.3/lib build/temp.linux-x86_64-3.7/cal_tools/cython/agipdalgs.o -o build/lib.linux-x86_64-3.7/cal_tools/cython/agipdalgs.cpython-37m-x86_64-linux-gnu.so -fopenmp running install_lib creating /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/cal_tools copying build/lib.linux-x86_64-3.7/cal_tools/metrology.py -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/cal_tools copying build/lib.linux-x86_64-3.7/cal_tools/__init__.py -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/cal_tools copying build/lib.linux-x86_64-3.7/cal_tools/agipdutils.py -> 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build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/FastCCD/CorrectionNotebook_NewDAQ_FastCCD_NBC.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/FastCCD creating /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/pnCCD copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/pnCCD/Characterize_pnCCD_Dark_NBC.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/pnCCD copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/pnCCD/Correct_pnCCD_NBC.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/pnCCD copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/pnCCD/Characterize_pnCCD_Gain.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/pnCCD creating /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/Tutorial copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/Tutorial/calversion.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/Tutorial creating /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/generic copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/generic/overallmodules_Darks_Summary_NBC.ipynb -> 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/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/AGIPD copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD/AGIPD_Characterize_Gain_Combine_NBC.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/AGIPD copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD/AGIPD_FF_Histogramming.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/AGIPD creating /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/AGIPD/playground copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD/playground/AGIPD_SingleM_test_Dark.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/AGIPD/playground copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD/Characterize_AGIPD_Gain_FlatFields_NBC.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/AGIPD copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD/AGIPD_Correct_and_Verify_Summary_NBC.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/AGIPD copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD/Characterize_AGIPD_Gain_FlatFields_Summary.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/AGIPD copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD/Chracterize_AGIPD_Gain_PC_NBC.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/AGIPD copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD/Characterize_AGIPD_Gain_Darks_NBC.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/AGIPD copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD/AGIPD_Correct_and_Verify.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/AGIPD copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/AGIPD/AGIPD_Retrieve_Constants_Precorrection.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/AGIPD creating /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/ePix100 copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/ePix100/Correction_ePix100_NBC.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/ePix100 copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/ePix100/Characterize_Darks_ePix100_NBC.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/ePix100 creating /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/ePix10K copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/ePix10K/Characterize_Darks_ePix10K_NBC.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/ePix10K copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/ePix10K/Correction_ePix10K_NBC.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/ePix10K creating /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/LPD copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/LPD/LPD_Correct_and_Verify.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/LPD copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/LPD/Characterize_LPD_GAIN_CI_per_pixel_NBC.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/LPD copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/LPD/LPD_FlatField_Radial_per_pixel_CI_NBC.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/LPD copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/LPD/Mine_RadIntensity_vs_XGM_NBC.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/LPD copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/LPD/LPDChar_Darks_NBC.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/LPD creating /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/DSSC copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/DSSC/DSSC_Correct_and_Verify.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/DSSC copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/DSSC/Characterize_DSSC_Darks_NBC.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/DSSC creating /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/Jungfrau copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/Jungfrau/Jungfrau_dark_analysis_all_gains_burst_mode_NBC.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/Jungfrau copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks/Jungfrau/Jungfrau_Gain_Correct_and_Verify_NBC.ipynb -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks/Jungfrau copying build/lib.linux-x86_64-3.7/xfel_calibrate/settings.py -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate copying build/lib.linux-x86_64-3.7/xfel_calibrate/notebooks.py -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate copying build/lib.linux-x86_64-3.7/xfel_calibrate/calibrate.py -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate creating /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/bin copying build/lib.linux-x86_64-3.7/xfel_calibrate/bin/slurm_calibrate.sh -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/bin copying build/lib.linux-x86_64-3.7/xfel_calibrate/bin/pre-commit-diff.sh -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/bin copying build/lib.linux-x86_64-3.7/xfel_calibrate/titlepage.tmpl -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate copying build/lib.linux-x86_64-3.7/xfel_calibrate/finalize.py -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate copying build/lib.linux-x86_64-3.7/xfel_calibrate/xfel.pdf -> /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate byte-compiling /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/cal_tools/metrology.py to metrology.cpython-37.pyc byte-compiling /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/cal_tools/__init__.py to __init__.cpython-37.pyc byte-compiling /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/cal_tools/agipdutils.py to agipdutils.cpython-37.pyc byte-compiling /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/cal_tools/agipdutils_ff.py to agipdutils_ff.cpython-37.pyc byte-compiling /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/cal_tools/step_timing.py to step_timing.cpython-37.pyc byte-compiling /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/cal_tools/pnccdlib.py to pnccdlib.cpython-37.pyc byte-compiling /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/cal_tools/mdc_config.py to mdc_config.cpython-37.pyc byte-compiling /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/cal_tools/agipdlib.py to agipdlib.cpython-37.pyc byte-compiling /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/cal_tools/tools.py to tools.cpython-37.pyc byte-compiling /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/cal_tools/enums.py to enums.cpython-37.pyc byte-compiling /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/cal_tools/plotting.py to plotting.cpython-37.pyc byte-compiling /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/cal_tools/ana_tools.py to ana_tools.cpython-37.pyc byte-compiling /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/cal_tools/dssclib.py to dssclib.cpython-37.pyc byte-compiling /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/cal_tools/lpdlib.py to lpdlib.cpython-37.pyc byte-compiling /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/__init__.py to __init__.cpython-37.pyc byte-compiling /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/VERSION.py to VERSION.cpython-37.pyc byte-compiling /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/settings.py to settings.cpython-37.pyc byte-compiling /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/notebooks.py to notebooks.cpython-37.pyc byte-compiling /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/calibrate.py to calibrate.cpython-37.pyc byte-compiling /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/xfel_calibrate/finalize.py to finalize.cpython-37.pyc running install_egg_info running egg_info creating European_XFEL_Offline_Calibration.egg-info writing European_XFEL_Offline_Calibration.egg-info/PKG-INFO writing dependency_links to European_XFEL_Offline_Calibration.egg-info/dependency_links.txt writing entry points to European_XFEL_Offline_Calibration.egg-info/entry_points.txt writing requirements to European_XFEL_Offline_Calibration.egg-info/requires.txt writing top-level names to European_XFEL_Offline_Calibration.egg-info/top_level.txt writing manifest file 'European_XFEL_Offline_Calibration.egg-info/SOURCES.txt' reading manifest file 'European_XFEL_Offline_Calibration.egg-info/SOURCES.txt' writing manifest file 'European_XFEL_Offline_Calibration.egg-info/SOURCES.txt' Copying European_XFEL_Offline_Calibration.egg-info to /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/European_XFEL_Offline_Calibration-1.0-py3.7.egg-info running install_scripts Installing xfel-calibrate script to /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/bin /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/cal_tools/cython/agipdalgs.pyx tree = Parsing.p_module(s, pxd, full_module_name) Python environment seems to not be a Karabo environment. Please install PyDetLib manually.