Read the Docs build information
Build id: 22708
Project: european-xfel-offline-calibration
Version: latest
Commit: 7f71f4742aa11adc420457fc59cfd2e2926edd82
Date: 2021-11-23T15:11:38.919514Z
State: finished
Success: True


[rtd-command-info] start-time: 2021-11-23T16:04:16.259281Z, end-time: 2021-11-23T16:04:41.965737Z, duration: 25, exit-code: 0
git clone --no-single-branch --depth 50 http://git.xfel.eu/gitlab/detectors/pycalibration.git .
Cloning into '.'...
Checking out files:  31% (77/242)   
Checking out files:  32% (78/242)   
Checking out files:  33% (80/242)   
Checking out files:  34% (83/242)   
Checking out files:  35% (85/242)   
Checking out files:  36% (88/242)   
Checking out files:  37% (90/242)   
Checking out files:  38% (92/242)   
Checking out files:  39% (95/242)   
Checking out files:  40% (97/242)   
Checking out files:  41% (100/242)   
Checking out files:  42% (102/242)   
Checking out files:  43% (105/242)   
Checking out files:  44% (107/242)   
Checking out files:  45% (109/242)   
Checking out files:  46% (112/242)   
Checking out files:  47% (114/242)   
Checking out files:  48% (117/242)   
Checking out files:  49% (119/242)   
Checking out files:  50% (121/242)   
Checking out files:  51% (124/242)   
Checking out files:  52% (126/242)   
Checking out files:  53% (129/242)   
Checking out files:  54% (131/242)   
Checking out files:  55% (134/242)   
Checking out files:  56% (136/242)   
Checking out files:  57% (138/242)   
Checking out files:  58% (141/242)   
Checking out files:  59% (143/242)   
Checking out files:  60% (146/242)   
Checking out files:  61% (148/242)   
Checking out files:  62% (151/242)   
Checking out files:  63% (153/242)   
Checking out files:  64% (155/242)   
Checking out files:  65% (158/242)   
Checking out files:  66% (160/242)   
Checking out files:  67% (163/242)   
Checking out files:  68% (165/242)   
Checking out files:  69% (167/242)   
Checking out files:  70% (170/242)   
Checking out files:  71% (172/242)   
Checking out files:  72% (175/242)   
Checking out files:  73% (177/242)   
Checking out files:  74% (180/242)   
Checking out files:  75% (182/242)   
Checking out files:  76% (184/242)   
Checking out files:  77% (187/242)   
Checking out files:  78% (189/242)   
Checking out files:  79% (192/242)   
Checking out files:  80% (194/242)   
Checking out files:  81% (197/242)   
Checking out files:  82% (199/242)   
Checking out files:  83% (201/242)   
Checking out files:  84% (204/242)   
Checking out files:  85% (206/242)   
Checking out files:  86% (209/242)   
Checking out files:  87% (211/242)   
Checking out files:  88% (213/242)   
Checking out files:  89% (216/242)   
Checking out files:  90% (218/242)   
Checking out files:  91% (221/242)   
Checking out files:  92% (223/242)   
Checking out files:  93% (226/242)   
Checking out files:  94% (228/242)   
Checking out files:  95% (230/242)   
Checking out files:  96% (233/242)   
Checking out files:  97% (235/242)   
Checking out files:  98% (238/242)   
Checking out files:  99% (240/242)   
Checking out files: 100% (242/242)   
Checking out files: 100% (242/242), done.

[rtd-command-info] start-time: 2021-11-23T16:04:42.356506Z, end-time: 2021-11-23T16:04:43.436396Z, duration: 1, exit-code: 0
git checkout --force origin/doc/run_rtd
Note: checking out 'origin/doc/run_rtd'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 7f71f47 update pyDetlib and cal_db_interactive tags

[rtd-command-info] start-time: 2021-11-23T16:04:43.574986Z, end-time: 2021-11-23T16:04:43.662772Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2021-11-23T16:04:45.333820Z, end-time: 2021-11-23T16:04:50.858104Z, duration: 5, exit-code: 0
python3.8 -mvirtualenv /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest
Using base prefix '/home/docs/.pyenv/versions/3.8.0'
New python executable in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/bin/python3.8
Also creating executable in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2021-11-23T16:04:50.994253Z, end-time: 2021-11-23T16:04:52.055999Z, duration: 1, exit-code: 0
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/bin/python -m pip install --upgrade --no-cache-dir pip
Requirement already satisfied: pip in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (21.3.1)

[rtd-command-info] start-time: 2021-11-23T16:04:52.193465Z, end-time: 2021-11-23T16:05:26.606912Z, duration: 34, exit-code: 0
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/bin/python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1
Collecting Pygments==2.3.1
  Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB)
Collecting setuptools==41.0.1
  Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB)
Collecting docutils==0.14
  Downloading docutils-0.14-py3-none-any.whl (543 kB)
Collecting mock==1.0.1
  Downloading mock-1.0.1.zip (861 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting pillow==5.4.1
  Downloading Pillow-5.4.1.tar.gz (16.0 MB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting alabaster!=0.7.5,<0.8,>=0.7
  Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB)
Collecting commonmark==0.8.1
  Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB)
Collecting recommonmark==0.5.0
  Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB)
Collecting sphinx<2
  Downloading Sphinx-1.8.6-py2.py3-none-any.whl (3.1 MB)
Collecting sphinx-rtd-theme<0.5
  Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB)
Collecting readthedocs-sphinx-ext<1.1
  Downloading readthedocs_sphinx_ext-1.0.4-py2.py3-none-any.whl (28 kB)
Collecting future
  Downloading future-0.18.2.tar.gz (829 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting six>=1.5
  Downloading six-1.16.0-py2.py3-none-any.whl (11 kB)
Collecting requests>=2.0.0
  Downloading requests-2.26.0-py2.py3-none-any.whl (62 kB)
Collecting snowballstemmer>=1.1
  Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB)
Collecting Jinja2>=2.3
  Downloading Jinja2-3.0.3-py3-none-any.whl (133 kB)
Collecting sphinxcontrib-websupport
  Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB)
Collecting imagesize
  Downloading imagesize-1.3.0-py2.py3-none-any.whl (5.2 kB)
Collecting packaging
  Downloading packaging-21.3-py3-none-any.whl (40 kB)
Collecting babel!=2.0,>=1.3
  Downloading Babel-2.9.1-py2.py3-none-any.whl (8.8 MB)
Collecting pytz>=2015.7
  Downloading pytz-2021.3-py2.py3-none-any.whl (503 kB)
Collecting MarkupSafe>=2.0
  Downloading MarkupSafe-2.0.1-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (30 kB)
Collecting certifi>=2017.4.17
  Downloading certifi-2021.10.8-py2.py3-none-any.whl (149 kB)
Collecting urllib3<1.27,>=1.21.1
  Downloading urllib3-1.26.7-py2.py3-none-any.whl (138 kB)
Collecting idna<4,>=2.5
  Downloading idna-3.3-py3-none-any.whl (61 kB)
Collecting charset-normalizer~=2.0.0
  Downloading charset_normalizer-2.0.7-py3-none-any.whl (38 kB)
Collecting pyparsing!=3.0.5,>=2.0.2
  Downloading pyparsing-3.0.6-py3-none-any.whl (97 kB)
Collecting sphinxcontrib-serializinghtml
  Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB)
Building wheels for collected packages: mock, pillow, future
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=0b6cfacf2fba4e3a9c62036aed5197152aa0f9ff903f667acafaa55d48c71fee
  Stored in directory: /tmp/pip-ephem-wheel-cache-4vzplwgw/wheels/41/7c/21/90057f91c6ead7c77a90c52d6e85ca48bf82d8b0d3f8dfbb65
  Building wheel for pillow (setup.py): started
  Building wheel for pillow (setup.py): finished with status 'done'
  Created wheel for pillow: filename=Pillow-5.4.1-cp38-cp38-linux_x86_64.whl size=1260134 sha256=8387ad8d174ab981fbd9bf7657a44149e4b6ea158759a44e7f8b64c895ed97fd
  Stored in directory: /tmp/pip-ephem-wheel-cache-4vzplwgw/wheels/5f/a8/6b/5b7b3f764d879214eb03570f74d2b086201eb514e6ffa68d6d
  Building wheel for future (setup.py): started
  Building wheel for future (setup.py): finished with status 'done'
  Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=0444fe7b4faeb29bc181da25c3578f5f664b533153c7d86570f5a0a3e89d3819
  Stored in directory: /tmp/pip-ephem-wheel-cache-4vzplwgw/wheels/8e/70/28/3d6ccd6e315f65f245da085482a2e1c7d14b90b30f239e2cf4
Successfully built mock pillow future
Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, charset-normalizer, certifi, sphinxcontrib-websupport, snowballstemmer, six, setuptools, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock
  Attempting uninstall: setuptools
    Found existing installation: setuptools 59.2.0
    Uninstalling setuptools-59.2.0:
      Successfully uninstalled setuptools-59.2.0
Successfully installed Jinja2-3.0.3 MarkupSafe-2.0.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.9.1 certifi-2021.10.8 charset-normalizer-2.0.7 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-3.3 imagesize-1.3.0 mock-1.0.1 packaging-21.3 pillow-5.4.1 pyparsing-3.0.6 pytz-2021.3 readthedocs-sphinx-ext-1.0.4 recommonmark-0.5.0 requests-2.26.0 setuptools-41.0.1 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.7

[rtd-command-info] start-time: 2021-11-23T16:05:26.740360Z, end-time: 2021-11-23T16:08:26.961294Z, duration: 180, exit-code: 0
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/bin/python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt
Collecting iCalibrationDB@ git+https://xcalgitlab:dxh5vE8fFsEJHvatXjsV@git.xfel.eu/gitlab/detectors/cal_db_interactive.git@2.0.9
  Cloning https://xcalgitlab:****@git.xfel.eu/gitlab/detectors/cal_db_interactive.git (to revision 2.0.9) to /tmp/pip-install-tlmcnak_/icalibrationdb_f69cc6e8116f4765b8bbd289a1d61875
  Running command git clone --filter=blob:none -q 'https://xcalgitlab:****@git.xfel.eu/gitlab/detectors/cal_db_interactive.git' /tmp/pip-install-tlmcnak_/icalibrationdb_f69cc6e8116f4765b8bbd289a1d61875
  Running command git checkout -q 52a4ddaa05d1c773cb0a2c7f00f614969ed828d2
  Resolved https://xcalgitlab:****@git.xfel.eu/gitlab/detectors/cal_db_interactive.git to commit 52a4ddaa05d1c773cb0a2c7f00f614969ed828d2
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting XFELDetectorAnalysis@ git+https://xcalgitlab:dxh5vE8fFsEJHvatXjsV@git.xfel.eu/gitlab/karaboDevices/pyDetLib.git@2.7.0
  Cloning https://xcalgitlab:****@git.xfel.eu/gitlab/karaboDevices/pyDetLib.git (to revision 2.7.0) to /tmp/pip-install-tlmcnak_/xfeldetectoranalysis_45172b9541034a3992847f1c3657d12c
  Running command git clone --filter=blob:none -q 'https://xcalgitlab:****@git.xfel.eu/gitlab/karaboDevices/pyDetLib.git' /tmp/pip-install-tlmcnak_/xfeldetectoranalysis_45172b9541034a3992847f1c3657d12c
  Resolved https://xcalgitlab:****@git.xfel.eu/gitlab/karaboDevices/pyDetLib.git to commit ba6413ccd545c85514fdbd7195b984e90218d8df
  Installing build dependencies: started
  Installing build dependencies: still running...
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Collecting h5py
  Downloading h5py-3.6.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (4.5 MB)
Collecting pyzmq
  Downloading pyzmq-22.3.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.1 MB)
Collecting python-dateutil
  Downloading python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
Collecting sphinxcontrib-napoleon==0.6.1
  Downloading sphinxcontrib_napoleon-0.6.1-py2.py3-none-any.whl (18 kB)
Collecting dill>=0.2.5
  Downloading dill-0.3.4-py2.py3-none-any.whl (86 kB)
Collecting matplotlib>=2.0.0
  Downloading matplotlib-3.5.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (11.3 MB)
Collecting ipython
  Downloading ipython-7.29.0-py3-none-any.whl (790 kB)
Collecting pypandoc==1.4
  Downloading pypandoc-1.4.tar.gz (27 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting iminuit==1.3.8
  Downloading iminuit-1.3.8-cp38-cp38-manylinux2010_x86_64.whl (4.3 MB)
Collecting ipyparallel
  Downloading ipyparallel-8.0.0-py3-none-any.whl (397 kB)
Collecting seaborn>=0.7.1
  Downloading seaborn-0.11.2-py3-none-any.whl (292 kB)
Collecting numpy>=1.13
  Downloading numpy-1.21.4-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.7 MB)
Collecting Cython
  Downloading Cython-0.29.24-cp38-cp38-manylinux1_x86_64.whl (1.9 MB)
Collecting pytools==2019.1
  Downloading pytools-2019.1.tar.gz (57 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting tornado>=4.5.1
  Downloading tornado-6.1-cp38-cp38-manylinux2010_x86_64.whl (427 kB)
Collecting brewer2mpl>=1.4.1
  Downloading brewer2mpl-1.4.1-py2.py3-none-any.whl (24 kB)
Requirement already satisfied: setuptools in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from pypandoc==1.4->XFELDetectorAnalysis@ git+https://xcalgitlab:dxh5vE8fFsEJHvatXjsV@git.xfel.eu/gitlab/karaboDevices/pyDetLib.git@2.7.0->-r docs/requirements.txt (line 2)) (41.0.1)
Requirement already satisfied: pip>=8.1.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from pypandoc==1.4->XFELDetectorAnalysis@ git+https://xcalgitlab:dxh5vE8fFsEJHvatXjsV@git.xfel.eu/gitlab/karaboDevices/pyDetLib.git@2.7.0->-r docs/requirements.txt (line 2)) (21.3.1)
Requirement already satisfied: wheel>=0.25.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from pypandoc==1.4->XFELDetectorAnalysis@ git+https://xcalgitlab:dxh5vE8fFsEJHvatXjsV@git.xfel.eu/gitlab/karaboDevices/pyDetLib.git@2.7.0->-r docs/requirements.txt (line 2)) (0.37.0)
Collecting decorator>=3.2.0
  Downloading decorator-5.1.0-py3-none-any.whl (9.1 kB)
Collecting appdirs>=1.4.0
  Downloading appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
Requirement already satisfied: six>=1.8.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from pytools==2019.1->XFELDetectorAnalysis@ git+https://xcalgitlab:dxh5vE8fFsEJHvatXjsV@git.xfel.eu/gitlab/karaboDevices/pyDetLib.git@2.7.0->-r docs/requirements.txt (line 2)) (1.16.0)
Collecting pockets>=0.3
  Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB)
Collecting cycler>=0.10
  Downloading cycler-0.11.0-py3-none-any.whl (6.4 kB)
Collecting fonttools>=4.22.0
  Downloading fonttools-4.28.2-py3-none-any.whl (880 kB)
Collecting kiwisolver>=1.0.1
  Downloading kiwisolver-1.3.2-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (1.2 MB)
Requirement already satisfied: packaging>=20.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from matplotlib>=2.0.0->XFELDetectorAnalysis@ git+https://xcalgitlab:dxh5vE8fFsEJHvatXjsV@git.xfel.eu/gitlab/karaboDevices/pyDetLib.git@2.7.0->-r docs/requirements.txt (line 2)) (21.3)
Requirement already satisfied: pyparsing>=2.2.1 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from matplotlib>=2.0.0->XFELDetectorAnalysis@ git+https://xcalgitlab:dxh5vE8fFsEJHvatXjsV@git.xfel.eu/gitlab/karaboDevices/pyDetLib.git@2.7.0->-r docs/requirements.txt (line 2)) (3.0.6)
Collecting pillow>=6.2.0
  Downloading Pillow-8.4.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.1 MB)
Collecting setuptools-scm>=4
  Downloading setuptools_scm-6.3.2-py3-none-any.whl (33 kB)
Collecting pandas>=0.23
  Downloading pandas-1.3.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.5 MB)
Collecting scipy>=1.0
  Downloading scipy-1.7.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (39.3 MB)
Collecting tqdm
  Downloading tqdm-4.62.3-py2.py3-none-any.whl (76 kB)
Collecting traitlets>=4.3
  Downloading traitlets-5.1.1-py3-none-any.whl (102 kB)
Collecting psutil
  Downloading psutil-5.8.0-cp38-cp38-manylinux2010_x86_64.whl (296 kB)
Collecting jupyter-client
  Downloading jupyter_client-7.1.0-py3-none-any.whl (129 kB)
Collecting entrypoints
  Downloading entrypoints-0.3-py2.py3-none-any.whl (11 kB)
Collecting ipykernel>=4.4
  Downloading ipykernel-6.5.1-py3-none-any.whl (125 kB)
Requirement already satisfied: pygments in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from ipython->XFELDetectorAnalysis@ git+https://xcalgitlab:dxh5vE8fFsEJHvatXjsV@git.xfel.eu/gitlab/karaboDevices/pyDetLib.git@2.7.0->-r docs/requirements.txt (line 2)) (2.3.1)
Collecting backcall
  Downloading backcall-0.2.0-py2.py3-none-any.whl (11 kB)
Collecting matplotlib-inline
  Downloading matplotlib_inline-0.1.3-py3-none-any.whl (8.2 kB)
Collecting pexpect>4.3
  Downloading pexpect-4.8.0-py2.py3-none-any.whl (59 kB)
Collecting pickleshare
  Downloading pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB)
Collecting prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0
  Downloading prompt_toolkit-3.0.22-py3-none-any.whl (374 kB)
Collecting jedi>=0.16
  Downloading jedi-0.18.1-py2.py3-none-any.whl (1.6 MB)
Collecting debugpy<2.0,>=1.0.0
  Downloading debugpy-1.5.1-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.9 MB)
Collecting parso<0.9.0,>=0.8.0
  Downloading parso-0.8.2-py2.py3-none-any.whl (94 kB)
Collecting jupyter-core>=4.6.0
  Downloading jupyter_core-4.9.1-py3-none-any.whl (86 kB)
Collecting nest-asyncio>=1.5
  Downloading nest_asyncio-1.5.1-py3-none-any.whl (5.0 kB)
Requirement already satisfied: pytz>=2017.3 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from pandas>=0.23->seaborn>=0.7.1->XFELDetectorAnalysis@ git+https://xcalgitlab:dxh5vE8fFsEJHvatXjsV@git.xfel.eu/gitlab/karaboDevices/pyDetLib.git@2.7.0->-r docs/requirements.txt (line 2)) (2021.3)
Collecting ptyprocess>=0.5
  Downloading ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB)
Collecting wcwidth
  Downloading wcwidth-0.2.5-py2.py3-none-any.whl (30 kB)
Collecting tomli>=1.0.0
  Downloading tomli-1.2.2-py3-none-any.whl (12 kB)
Building wheels for collected packages: iCalibrationDB, XFELDetectorAnalysis, pypandoc, pytools
  Building wheel for iCalibrationDB (setup.py): started
  Building wheel for iCalibrationDB (setup.py): finished with status 'done'
  Created wheel for iCalibrationDB: filename=iCalibrationDB-2.0.9-py3-none-any.whl size=32459 sha256=db30e26a51139935fd9038b9f1381dded610c426b33d5bbf5224c3319b0d278f
  Stored in directory: /tmp/pip-ephem-wheel-cache-anzypdq7/wheels/fe/61/34/908fe6b996b152f24b114a70a4ef9bab9bc7bae552e3c44d29
  Building wheel for XFELDetectorAnalysis (pyproject.toml): started
  Building wheel for XFELDetectorAnalysis (pyproject.toml): finished with status 'done'
  Created wheel for XFELDetectorAnalysis: filename=XFELDetectorAnalysis-2.7.0-cp38-cp38-linux_x86_64.whl size=889986 sha256=5dfe804da0dbdd89193773814a966c7934542b896d826f0521e4ca31ed4d5d04
  Stored in directory: /tmp/pip-ephem-wheel-cache-anzypdq7/wheels/2d/50/f3/39900f08fd8007d971b1feeaedfa49daef50edf60ce736f587
  Building wheel for pypandoc (setup.py): started
  Building wheel for pypandoc (setup.py): finished with status 'done'
  Created wheel for pypandoc: filename=pypandoc-1.4-py3-none-any.whl size=16715 sha256=5db60d916678d5fcc6709367b241644c21eec5deb66561bd1d040c2838636b03
  Stored in directory: /tmp/pip-ephem-wheel-cache-anzypdq7/wheels/f7/d9/a0/ef1fe56c058e41d6271a4935caaeae89d43e2280504690a329
  Building wheel for pytools (setup.py): started
  Building wheel for pytools (setup.py): finished with status 'done'
  Created wheel for pytools: filename=pytools-2019.1-py2.py3-none-any.whl size=57945 sha256=0daa5a6f07b5cd945ff1992dcbfa1c52b7094c831bdedabe2bdafeefb9300ff9
  Stored in directory: /tmp/pip-ephem-wheel-cache-anzypdq7/wheels/ba/98/45/5908f96576bd45f00589540af64d4e3fc9ed8882a5fc1e72e1
Successfully built iCalibrationDB XFELDetectorAnalysis pypandoc pytools
Installing collected packages: wcwidth, traitlets, ptyprocess, parso, tornado, tomli, pyzmq, python-dateutil, prompt-toolkit, pickleshare, pexpect, nest-asyncio, matplotlib-inline, jupyter-core, jedi, entrypoints, decorator, backcall, setuptools-scm, pillow, numpy, kiwisolver, jupyter-client, ipython, fonttools, debugpy, cycler, tqdm, scipy, psutil, pockets, pandas, matplotlib, ipykernel, appdirs, sphinxcontrib-napoleon, seaborn, pytools, pypandoc, ipyparallel, iminuit, h5py, dill, Cython, brewer2mpl, XFELDetectorAnalysis, iCalibrationDB
  Attempting uninstall: pillow
    Found existing installation: Pillow 5.4.1
    Uninstalling Pillow-5.4.1:
      Successfully uninstalled Pillow-5.4.1
Successfully installed Cython-0.29.24 XFELDetectorAnalysis-2.7.0 appdirs-1.4.4 backcall-0.2.0 brewer2mpl-1.4.1 cycler-0.11.0 debugpy-1.5.1 decorator-5.1.0 dill-0.3.4 entrypoints-0.3 fonttools-4.28.2 h5py-3.6.0 iCalibrationDB-2.0.9 iminuit-1.3.8 ipykernel-6.5.1 ipyparallel-8.0.0 ipython-7.29.0 jedi-0.18.1 jupyter-client-7.1.0 jupyter-core-4.9.1 kiwisolver-1.3.2 matplotlib-3.5.0 matplotlib-inline-0.1.3 nest-asyncio-1.5.1 numpy-1.21.4 pandas-1.3.4 parso-0.8.2 pexpect-4.8.0 pickleshare-0.7.5 pillow-8.4.0 pockets-0.9.1 prompt-toolkit-3.0.22 psutil-5.8.0 ptyprocess-0.7.0 pypandoc-1.4 python-dateutil-2.8.2 pytools-2019.1 pyzmq-22.3.0 scipy-1.7.2 seaborn-0.11.2 setuptools-scm-6.3.2 sphinxcontrib-napoleon-0.6.1 tomli-1.2.2 tornado-6.1 tqdm-4.62.3 traitlets-5.1.1 wcwidth-0.2.5

[rtd-command-info] start-time: 2021-11-23T16:08:27.102920Z, end-time: 2021-11-23T16:09:40.297425Z, duration: 73, exit-code: 0
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/bin/python -m pip install --upgrade --upgrade-strategy eager --no-cache-dir .[docs]
Processing /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Collecting princess==0.5
  Downloading princess-0.5-py3-none-any.whl (4.2 kB)
Collecting kafka-python==2.0.2
  Downloading kafka_python-2.0.2-py2.py3-none-any.whl (246 kB)
Collecting nbconvert==5.6.1
  Downloading nbconvert-5.6.1-py2.py3-none-any.whl (455 kB)
Collecting traitlets==4.3.3
  Downloading traitlets-4.3.3-py2.py3-none-any.whl (75 kB)
Collecting sphinx==1.8.5
  Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB)
Collecting dynaconf==3.1.4
  Downloading dynaconf-3.1.4-py2.py3-none-any.whl (197 kB)
Collecting lxml==4.5.0
  Downloading lxml-4.5.0-cp38-cp38-manylinux1_x86_64.whl (5.6 MB)
Collecting astsearch==0.2.0
  Downloading astsearch-0.2.0-py3-none-any.whl (6.5 kB)
Collecting ipython==7.12.0
  Downloading ipython-7.12.0-py3-none-any.whl (777 kB)
Collecting extra-data==1.4.1
  Downloading EXtra_data-1.4.1-py3-none-any.whl (102 kB)
Collecting ipython-genutils==0.2.0
  Downloading ipython_genutils-0.2.0-py2.py3-none-any.whl (26 kB)
Collecting Jinja2==2.11.2
  Downloading Jinja2-2.11.2-py2.py3-none-any.whl (125 kB)
Collecting jupyter-core==4.6.1
  Downloading jupyter_core-4.6.1-py2.py3-none-any.whl (82 kB)
Collecting cfelpyutils==1.0.1
  Downloading cfelpyutils-1.0.1-py3-none-any.whl (23 kB)
Collecting dill==0.3.0
  Downloading dill-0.3.0.tar.gz (151 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting ipykernel==5.1.4
  Downloading ipykernel-5.1.4-py3-none-any.whl (116 kB)
Collecting h5py==3.5.0
  Downloading h5py-3.5.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (4.5 MB)
Collecting scikit-learn==0.22.2.post1
  Downloading scikit_learn-0.22.2.post1-cp38-cp38-manylinux1_x86_64.whl (7.0 MB)
Collecting Cython==0.29.21
  Downloading Cython-0.29.21-cp38-cp38-manylinux1_x86_64.whl (1.9 MB)
Collecting sharedmem==0.3.8
  Downloading sharedmem-0.3.8.tar.gz (17 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting nbformat==5.0.7
  Downloading nbformat-5.0.7-py3-none-any.whl (170 kB)
Requirement already satisfied: iminuit==1.3.8 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from European-XFEL-Offline-Calibration==1.0) (1.3.8)
Collecting extra-geom==1.6.0
  Downloading EXtra_geom-1.6.0-py3-none-any.whl (77 kB)
Collecting pyyaml==5.3
  Downloading PyYAML-5.3.tar.gz (268 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting pyzmq==19.0.0
  Downloading pyzmq-19.0.0-cp38-cp38-manylinux1_x86_64.whl (1.1 MB)
Collecting requests==2.22.0
  Downloading requests-2.22.0-py2.py3-none-any.whl (57 kB)
Collecting ipyparallel==6.2.4
  Downloading ipyparallel-6.2.4-py2.py3-none-any.whl (198 kB)
Collecting docutils==0.17.1
  Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB)
Collecting jupyter-console==6.1.0
  Downloading jupyter_console-6.1.0-py2.py3-none-any.whl (21 kB)
Requirement already satisfied: pypandoc==1.4 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from European-XFEL-Offline-Calibration==1.0) (1.4)
Collecting astcheck==0.2.5
  Downloading astcheck-0.2.5-py2.py3-none-any.whl (10 kB)
Collecting matplotlib==3.4.2
  Downloading matplotlib-3.4.2-cp38-cp38-manylinux1_x86_64.whl (10.3 MB)
Collecting pasha==0.1.0
  Downloading pasha-0.1.0-py3-none-any.whl (11 kB)
Collecting metadata-client==3.0.8
  Downloading metadata_client-3.0.8-py3-none-any.whl (109 kB)
Collecting numpy==1.20.3
  Downloading numpy-1.20.3-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.4 MB)
Collecting karabo-data==0.7.0
  Downloading karabo_data-0.7.0-py3-none-any.whl (126 kB)
Collecting notebook==6.1.5
  Downloading notebook-6.1.5-py3-none-any.whl (9.5 MB)
Collecting prettytable==0.7.2
  Downloading prettytable-0.7.2.zip (28 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting nbclient==0.5.1
  Downloading nbclient-0.5.1-py3-none-any.whl (65 kB)
Collecting scipy==1.7.0
  Downloading scipy-1.7.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (28.4 MB)
Collecting gitpython==3.1.0
  Downloading GitPython-3.1.0-py3-none-any.whl (450 kB)
Collecting jupyter-client==6.1.7
  Downloading jupyter_client-6.1.7-py3-none-any.whl (108 kB)
Collecting tabulate==0.8.6
  Downloading tabulate-0.8.6.tar.gz (45 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting nbparameterise==0.5
  Downloading nbparameterise-0.5-py3-none-any.whl (6.0 kB)
Collecting python-dateutil==2.8.1
  Downloading python_dateutil-2.8.1-py2.py3-none-any.whl (227 kB)
Collecting nbsphinx
  Downloading nbsphinx-0.8.7-py3-none-any.whl (25 kB)
Requirement already satisfied: future in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from cfelpyutils==1.0.1->European-XFEL-Offline-Calibration==1.0) (0.18.2)
Requirement already satisfied: pandas in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from extra-data==1.4.1->European-XFEL-Offline-Calibration==1.0) (1.3.4)
Collecting karabo-bridge>=0.6
  Downloading karabo_bridge-0.6.1.tar.gz (17 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Requirement already satisfied: psutil in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from extra-data==1.4.1->European-XFEL-Offline-Calibration==1.0) (5.8.0)
Collecting fabio
  Downloading fabio-0.12.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.0 MB)
Collecting xarray
  Downloading xarray-0.20.1-py3-none-any.whl (835 kB)
Collecting gitdb<5,>=4.0.1
  Downloading gitdb-4.0.9-py3-none-any.whl (63 kB)
Requirement already satisfied: tornado>=4.2 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from ipykernel==5.1.4->European-XFEL-Offline-Calibration==1.0) (6.1)
Requirement already satisfied: decorator in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from ipyparallel==6.2.4->European-XFEL-Offline-Calibration==1.0) (5.1.0)
Requirement already satisfied: jedi>=0.10 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from ipython==7.12.0->European-XFEL-Offline-Calibration==1.0) (0.18.1)
Requirement already satisfied: pickleshare in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from ipython==7.12.0->European-XFEL-Offline-Calibration==1.0) (0.7.5)
Requirement already satisfied: prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from ipython==7.12.0->European-XFEL-Offline-Calibration==1.0) (3.0.22)
Requirement already satisfied: pygments in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from ipython==7.12.0->European-XFEL-Offline-Calibration==1.0) (2.3.1)
Collecting pygments
  Downloading Pygments-2.10.0-py3-none-any.whl (1.0 MB)
Requirement already satisfied: backcall in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from ipython==7.12.0->European-XFEL-Offline-Calibration==1.0) (0.2.0)
Requirement already satisfied: pexpect in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from ipython==7.12.0->European-XFEL-Offline-Calibration==1.0) (4.8.0)
Requirement already satisfied: setuptools>=18.5 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from ipython==7.12.0->European-XFEL-Offline-Calibration==1.0) (41.0.1)
Collecting setuptools>=18.5
  Downloading setuptools-59.2.0-py3-none-any.whl (952 kB)
Requirement already satisfied: MarkupSafe>=0.23 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from Jinja2==2.11.2->European-XFEL-Offline-Calibration==1.0) (2.0.1)
Collecting msgpack-numpy>=0.4.3
  Downloading msgpack_numpy-0.4.7.1-py2.py3-none-any.whl (6.7 kB)
Collecting msgpack>=0.5.4
  Downloading msgpack-1.0.2-cp38-cp38-manylinux1_x86_64.whl (302 kB)
Requirement already satisfied: pyparsing>=2.2.1 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from matplotlib==3.4.2->European-XFEL-Offline-Calibration==1.0) (3.0.6)
Requirement already satisfied: cycler>=0.10 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from matplotlib==3.4.2->European-XFEL-Offline-Calibration==1.0) (0.11.0)
Requirement already satisfied: kiwisolver>=1.0.1 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from matplotlib==3.4.2->European-XFEL-Offline-Calibration==1.0) (1.3.2)
Requirement already satisfied: pillow>=6.2.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from matplotlib==3.4.2->European-XFEL-Offline-Calibration==1.0) (8.4.0)
Collecting oauth2-xfel-client>=6.0
  Downloading oauth2_xfel_client-6.0.0-py3-none-any.whl (8.7 kB)
Collecting requests-oauthlib
  Downloading requests_oauthlib-1.3.0-py2.py3-none-any.whl (23 kB)
Collecting oauthlib
  Downloading oauthlib-3.1.1-py2.py3-none-any.whl (146 kB)
Requirement already satisfied: pytz in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from metadata-client==3.0.8->European-XFEL-Offline-Calibration==1.0) (2021.3)
Requirement already satisfied: nest-asyncio in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from nbclient==0.5.1->European-XFEL-Offline-Calibration==1.0) (1.5.1)
Collecting async-generator
  Downloading async_generator-1.10-py3-none-any.whl (18 kB)
Collecting mistune<2,>=0.8.1
  Downloading mistune-0.8.4-py2.py3-none-any.whl (16 kB)
Requirement already satisfied: entrypoints>=0.2.2 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from nbconvert==5.6.1->European-XFEL-Offline-Calibration==1.0) (0.3)
Collecting pandocfilters>=1.4.1
  Downloading pandocfilters-1.5.0-py2.py3-none-any.whl (8.7 kB)
Collecting testpath
  Downloading testpath-0.5.0-py3-none-any.whl (84 kB)
Collecting defusedxml
  Downloading defusedxml-0.7.1-py2.py3-none-any.whl (25 kB)
Collecting bleach
  Downloading bleach-4.1.0-py2.py3-none-any.whl (157 kB)
Collecting jsonschema!=2.5.0,>=2.4
  Downloading jsonschema-4.2.1-py3-none-any.whl (69 kB)
Collecting argon2-cffi
  Downloading argon2_cffi-21.1.0-cp35-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.whl (96 kB)
Collecting Send2Trash
  Downloading Send2Trash-1.8.0-py3-none-any.whl (18 kB)
Collecting terminado>=0.8.3
  Downloading terminado-0.12.1-py3-none-any.whl (15 kB)
Collecting prometheus-client
  Downloading prometheus_client-0.12.0-py2.py3-none-any.whl (57 kB)
Requirement already satisfied: pip>=8.1.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from pypandoc==1.4->European-XFEL-Offline-Calibration==1.0) (21.3.1)
Requirement already satisfied: wheel>=0.25.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from pypandoc==1.4->European-XFEL-Offline-Calibration==1.0) (0.37.0)
Requirement already satisfied: six>=1.5 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from python-dateutil==2.8.1->European-XFEL-Offline-Calibration==1.0) (1.16.0)
Collecting idna<2.9,>=2.5
  Downloading idna-2.8-py2.py3-none-any.whl (58 kB)
Requirement already satisfied: certifi>=2017.4.17 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from requests==2.22.0->European-XFEL-Offline-Calibration==1.0) (2021.10.8)
Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1
  Downloading urllib3-1.25.11-py2.py3-none-any.whl (127 kB)
Collecting chardet<3.1.0,>=3.0.2
  Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB)
Collecting joblib>=0.11
  Downloading joblib-1.1.0-py2.py3-none-any.whl (306 kB)
Requirement already satisfied: sphinxcontrib-websupport in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from sphinx==1.8.5->European-XFEL-Offline-Calibration==1.0) (1.2.4)
Requirement already satisfied: imagesize in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from sphinx==1.8.5->European-XFEL-Offline-Calibration==1.0) (1.3.0)
Requirement already satisfied: alabaster<0.8,>=0.7 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from sphinx==1.8.5->European-XFEL-Offline-Calibration==1.0) (0.7.12)
Requirement already satisfied: packaging in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from sphinx==1.8.5->European-XFEL-Offline-Calibration==1.0) (21.3)
Requirement already satisfied: snowballstemmer>=1.1 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from sphinx==1.8.5->European-XFEL-Offline-Calibration==1.0) (2.2.0)
Requirement already satisfied: babel!=2.0,>=1.3 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from sphinx==1.8.5->European-XFEL-Offline-Calibration==1.0) (2.9.1)
Collecting smmap<6,>=3.0.1
  Downloading smmap-5.0.0-py3-none-any.whl (24 kB)
Requirement already satisfied: parso<0.9.0,>=0.8.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from jedi>=0.10->ipython==7.12.0->European-XFEL-Offline-Calibration==1.0) (0.8.2)
Collecting attrs>=17.4.0
  Downloading attrs-21.2.0-py2.py3-none-any.whl (53 kB)
Collecting pyrsistent!=0.17.0,!=0.17.1,!=0.17.2,>=0.14.0
  Downloading pyrsistent-0.18.0-cp38-cp38-manylinux1_x86_64.whl (118 kB)
Collecting importlib-resources>=1.4.0
  Downloading importlib_resources-5.4.0-py3-none-any.whl (28 kB)
Requirement already satisfied: wcwidth in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0->ipython==7.12.0->European-XFEL-Offline-Calibration==1.0) (0.2.5)
Requirement already satisfied: ptyprocess in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from terminado>=0.8.3->notebook==6.1.5->European-XFEL-Offline-Calibration==1.0) (0.7.0)
Collecting cffi>=1.0.0
  Downloading cffi-1.15.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (446 kB)
Collecting webencodings
  Downloading webencodings-0.5.1-py2.py3-none-any.whl (11 kB)
Requirement already satisfied: sphinxcontrib-serializinghtml in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/lib/python3.8/site-packages (from sphinxcontrib-websupport->sphinx==1.8.5->European-XFEL-Offline-Calibration==1.0) (1.1.5)
Collecting pycparser
  Downloading pycparser-2.21-py2.py3-none-any.whl (118 kB)
Collecting zipp>=3.1.0
  Downloading zipp-3.6.0-py3-none-any.whl (5.3 kB)
Building wheels for collected packages: dill, prettytable, pyyaml, sharedmem, tabulate, European-XFEL-Offline-Calibration, karabo-bridge
  Building wheel for dill (setup.py): started
  Building wheel for dill (setup.py): finished with status 'done'
  Created wheel for dill: filename=dill-0.3.0-py3-none-any.whl size=77512 sha256=44c513286000dbc99cac8d30f6e13014bfb3a5cc8beb22c6a724b6cc7c64ef7d
  Stored in directory: /tmp/pip-ephem-wheel-cache-9qx5qywt/wheels/ec/e7/fb/9b59e2dbda9eeefab51f7cb41df434ff463c4afe1985abff24
  Building wheel for prettytable (setup.py): started
  Building wheel for prettytable (setup.py): finished with status 'done'
  Created wheel for prettytable: filename=prettytable-0.7.2-py3-none-any.whl size=13699 sha256=6b265c2d87fdff247530a73292663ef85fd95dbaeb08a8a1934efca91eb7c09f
  Stored in directory: /tmp/pip-ephem-wheel-cache-9qx5qywt/wheels/48/6d/77/9517cb933af254f51a446f1a5ec9c2be3e45f17384940bce68
  Building wheel for pyyaml (setup.py): started
  Building wheel for pyyaml (setup.py): finished with status 'done'
  Created wheel for pyyaml: filename=PyYAML-5.3-cp38-cp38-linux_x86_64.whl size=44227 sha256=58b81321f33c9b0c299436ee8b3bd9ea021bc7f8b21404ad65eea8a94faf841d
  Stored in directory: /tmp/pip-ephem-wheel-cache-9qx5qywt/wheels/e4/94/ec/65e430f66fda7a86c08f61ce59455581adc269a65881b4ffeb
  Building wheel for sharedmem (setup.py): started
  Building wheel for sharedmem (setup.py): finished with status 'done'
  Created wheel for sharedmem: filename=sharedmem-0.3.8-py3-none-any.whl size=18341 sha256=c436d0ce79ece21e280c3aaf5849bd8391c615ac6dc60fe8fb4bf687c73893b9
  Stored in directory: /tmp/pip-ephem-wheel-cache-9qx5qywt/wheels/ee/ef/25/9562dc56f11d2b55824c1b1547eff68b75f1a0117d3b0867dd
  Building wheel for tabulate (setup.py): started
  Building wheel for tabulate (setup.py): finished with status 'done'
  Created wheel for tabulate: filename=tabulate-0.8.6-py3-none-any.whl size=23271 sha256=8a3cd8e5fd45fb8d4f121a1daee91fea5b08904db7479ed9eab54c227dd78286
  Stored in directory: /tmp/pip-ephem-wheel-cache-9qx5qywt/wheels/86/8c/d9/3b6c2f55efaefe656c52b725d2fdc5669085c83444979db8b3
  Building wheel for European-XFEL-Offline-Calibration (pyproject.toml): started
  Building wheel for European-XFEL-Offline-Calibration (pyproject.toml): finished with status 'done'
  Created wheel for European-XFEL-Offline-Calibration: filename=European_XFEL_Offline_Calibration-1.0-cp38-cp38-linux_x86_64.whl size=945906 sha256=28bf0618d6f0757712a0dbbc354c8dd0dc3f7ed5755fa9a748635cba479e23a0
  Stored in directory: /tmp/pip-ephem-wheel-cache-9qx5qywt/wheels/22/7d/09/eb4f2a2bc8741186a0b6a6c96994f65acdd8e2af144db3f698
  Building wheel for karabo-bridge (setup.py): started
  Building wheel for karabo-bridge (setup.py): finished with status 'done'
  Created wheel for karabo-bridge: filename=karabo_bridge-0.6.1-py3-none-any.whl size=23572 sha256=6cc7504d9c003adf4bdcb1779f0c277b68a9e10f9afe59d66c0c9c5c048c156f
  Stored in directory: /tmp/pip-ephem-wheel-cache-9qx5qywt/wheels/2a/a0/2b/f52b06d2c14fbb8bdcb82677deaa7a5c4d40277f87aab8058c
Successfully built dill prettytable pyyaml sharedmem tabulate European-XFEL-Offline-Calibration karabo-bridge
Installing collected packages: zipp, ipython-genutils, urllib3, traitlets, pyrsistent, importlib-resources, idna, chardet, attrs, webencodings, setuptools, requests, pyzmq, python-dateutil, pygments, pycparser, oauthlib, numpy, msgpack, jupyter-core, jsonschema, testpath, smmap, requests-oauthlib, pandocfilters, nbformat, msgpack-numpy, mistune, jupyter-client, Jinja2, ipython, defusedxml, cffi, bleach, async-generator, astcheck, xarray, terminado, Send2Trash, scipy, prometheus-client, oauth2-xfel-client, nbconvert, nbclient, matplotlib, karabo-bridge, joblib, ipykernel, h5py, gitdb, fabio, docutils, cfelpyutils, astsearch, argon2-cffi, tabulate, sphinx, sharedmem, scikit-learn, pyyaml, princess, prettytable, pasha, notebook, nbparameterise, metadata-client, lxml, karabo-data, kafka-python, jupyter-console, ipyparallel, gitpython, extra-geom, extra-data, dynaconf, dill, Cython, nbsphinx, European-XFEL-Offline-Calibration
  Attempting uninstall: urllib3
    Found existing installation: urllib3 1.26.7
    Uninstalling urllib3-1.26.7:
      Successfully uninstalled urllib3-1.26.7
  Attempting uninstall: traitlets
    Found existing installation: traitlets 5.1.1
    Uninstalling traitlets-5.1.1:
      Successfully uninstalled traitlets-5.1.1
  Attempting uninstall: idna
    Found existing installation: idna 3.3
    Uninstalling idna-3.3:
      Successfully uninstalled idna-3.3
  Attempting uninstall: setuptools
    Found existing installation: setuptools 41.0.1
    Uninstalling setuptools-41.0.1:
      Successfully uninstalled setuptools-41.0.1
  Attempting uninstall: requests
    Found existing installation: requests 2.26.0
    Uninstalling requests-2.26.0:
      Successfully uninstalled requests-2.26.0
  Attempting uninstall: pyzmq
    Found existing installation: pyzmq 22.3.0
    Uninstalling pyzmq-22.3.0:
      Successfully uninstalled pyzmq-22.3.0
  Attempting uninstall: python-dateutil
    Found existing installation: python-dateutil 2.8.2
    Uninstalling python-dateutil-2.8.2:
      Successfully uninstalled python-dateutil-2.8.2
  Attempting uninstall: pygments
    Found existing installation: Pygments 2.3.1
    Uninstalling Pygments-2.3.1:
      Successfully uninstalled Pygments-2.3.1
  Attempting uninstall: numpy
    Found existing installation: numpy 1.21.4
    Uninstalling numpy-1.21.4:
      Successfully uninstalled numpy-1.21.4
  Attempting uninstall: jupyter-core
    Found existing installation: jupyter-core 4.9.1
    Uninstalling jupyter-core-4.9.1:
      Successfully uninstalled jupyter-core-4.9.1
  Attempting uninstall: jupyter-client
    Found existing installation: jupyter-client 7.1.0
    Uninstalling jupyter-client-7.1.0:
      Successfully uninstalled jupyter-client-7.1.0
  Attempting uninstall: Jinja2
    Found existing installation: Jinja2 3.0.3
    Uninstalling Jinja2-3.0.3:
      Successfully uninstalled Jinja2-3.0.3
  Attempting uninstall: ipython
    Found existing installation: ipython 7.29.0
    Uninstalling ipython-7.29.0:
      Successfully uninstalled ipython-7.29.0
  Attempting uninstall: scipy
    Found existing installation: scipy 1.7.2
    Uninstalling scipy-1.7.2:
      Successfully uninstalled scipy-1.7.2
  Attempting uninstall: matplotlib
    Found existing installation: matplotlib 3.5.0
    Uninstalling matplotlib-3.5.0:
      Successfully uninstalled matplotlib-3.5.0
  Attempting uninstall: ipykernel
    Found existing installation: ipykernel 6.5.1
    Uninstalling ipykernel-6.5.1:
      Successfully uninstalled ipykernel-6.5.1
  Attempting uninstall: h5py
    Found existing installation: h5py 3.6.0
    Uninstalling h5py-3.6.0:
      Successfully uninstalled h5py-3.6.0
  Attempting uninstall: docutils
    Found existing installation: docutils 0.14
    Uninstalling docutils-0.14:
      Successfully uninstalled docutils-0.14
  Attempting uninstall: sphinx
    Found existing installation: Sphinx 1.8.6
    Uninstalling Sphinx-1.8.6:
      Successfully uninstalled Sphinx-1.8.6
  Attempting uninstall: ipyparallel
    Found existing installation: ipyparallel 8.0.0
    Uninstalling ipyparallel-8.0.0:
      Successfully uninstalled ipyparallel-8.0.0
  Attempting uninstall: dill
    Found existing installation: dill 0.3.4
    Uninstalling dill-0.3.4:
      Successfully uninstalled dill-0.3.4
  Attempting uninstall: Cython
    Found existing installation: Cython 0.29.24
    Uninstalling Cython-0.29.24:
      Successfully uninstalled Cython-0.29.24
Successfully installed Cython-0.29.21 European-XFEL-Offline-Calibration-1.0 Jinja2-2.11.2 Send2Trash-1.8.0 argon2-cffi-21.1.0 astcheck-0.2.5 astsearch-0.2.0 async-generator-1.10 attrs-21.2.0 bleach-4.1.0 cfelpyutils-1.0.1 cffi-1.15.0 chardet-3.0.4 defusedxml-0.7.1 dill-0.3.0 docutils-0.17.1 dynaconf-3.1.4 extra-data-1.4.1 extra-geom-1.6.0 fabio-0.12.0 gitdb-4.0.9 gitpython-3.1.0 h5py-3.5.0 idna-2.8 importlib-resources-5.4.0 ipykernel-5.1.4 ipyparallel-6.2.4 ipython-7.12.0 ipython-genutils-0.2.0 joblib-1.1.0 jsonschema-4.2.1 jupyter-client-6.1.7 jupyter-console-6.1.0 jupyter-core-4.6.1 kafka-python-2.0.2 karabo-bridge-0.6.1 karabo-data-0.7.0 lxml-4.5.0 matplotlib-3.4.2 metadata-client-3.0.8 mistune-0.8.4 msgpack-1.0.2 msgpack-numpy-0.4.7.1 nbclient-0.5.1 nbconvert-5.6.1 nbformat-5.0.7 nbparameterise-0.5 nbsphinx-0.8.7 notebook-6.1.5 numpy-1.20.3 oauth2-xfel-client-6.0.0 oauthlib-3.1.1 pandocfilters-1.5.0 pasha-0.1.0 prettytable-0.7.2 princess-0.5 prometheus-client-0.12.0 pycparser-2.21 pygments-2.10.0 pyrsistent-0.18.0 python-dateutil-2.8.1 pyyaml-5.3 pyzmq-19.0.0 requests-2.22.0 requests-oauthlib-1.3.0 scikit-learn-0.22.2.post1 scipy-1.7.0 setuptools-59.2.0 sharedmem-0.3.8 smmap-5.0.0 sphinx-1.8.5 tabulate-0.8.6 terminado-0.12.1 testpath-0.5.0 traitlets-4.3.3 urllib3-1.25.11 webencodings-0.5.1 xarray-0.20.1 zipp-3.6.0

[rtd-command-info] start-time: 2021-11-23T16:09:41.325519Z, end-time: 2021-11-23T16:09:41.406592Z, duration: 0, exit-code: 0
cat docs/source/conf.py
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# European XFEL Offline Calibration documentation build configuration file, created by
# sphinx-quickstart on Sun Jun 10 17:32:30 2018.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#
# import os
# import sys
# sys.path.insert(0, os.path.abspath('.'))

# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.autodoc',
    'sphinx.ext.intersphinx',
    'sphinx.ext.todo',
    'sphinx.ext.mathjax',
    'sphinx.ext.ifconfig',
    'sphinx.ext.viewcode',
]

import glob
import os
import sys
from subprocess import Popen

sys.path.append(os.path.abspath("../pycalibration/"))
p = Popen(["./makeAllDocs.sh"])
p.communicate()

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
source_suffix = '.rst'

# The encoding of source files.
#
# source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = 'European XFEL Offline Calibration'
copyright = '2018, The European XFEL Detector Group'
author = 'The European XFEL Detector Group'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
version = '1.0'
# The full version, including alpha/beta/rc tags.
release = '1.0'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#
# today = ''
#
# Else, today_fmt is used as the format for a strftime call.
#
# today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This patterns also effect to html_static_path and html_extra_path
exclude_patterns = []

# The reST default role (used for this markup: `text`) to use for all
# documents.
#
# default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
#
# add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#
# add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#
# show_authors = False

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# A list of ignored prefixes for module index sorting.
# modindex_common_prefix = []

# If true, keep warnings as "system message" paragraphs in the built documents.
# keep_warnings = False

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = True


# -- Options for HTML output ----------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
#
# html_theme = ''

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
#
# html_theme_options = {}

# Add any paths that contain custom themes here, relative to this directory.
# html_theme_path = []

# The name for this set of Sphinx documents.
# "<project> v<release> documentation" by default.
#
# html_title = 'European XFEL Offline Calibration v1.0'

# A shorter title for the navigation bar.  Default is the same as html_title.
#
# html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#
# html_logo = None

# The name of an image file (relative to this directory) to use as a favicon of
# the docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#
# html_favicon = None

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

# Add any extra paths that contain custom files (such as robots.txt or
# .htaccess) here, relative to this directory. These files are copied
# directly to the root of the documentation.
#
# html_extra_path = []

# If not None, a 'Last updated on:' timestamp is inserted at every page
# bottom, using the given strftime format.
# The empty string is equivalent to '%b %d, %Y'.
#
# html_last_updated_fmt = None

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#
# html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
#
# html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to
# template names.
#
# html_additional_pages = {}

# If false, no module index is generated.
#
# html_domain_indices = True

# If false, no index is generated.
#
# html_use_index = True

# If true, the index is split into individual pages for each letter.
#
# html_split_index = False

# If true, links to the reST sources are added to the pages.
#
# html_show_sourcelink = True

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
#
# html_show_sphinx = True

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
#
# html_show_copyright = True

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
#
# html_use_opensearch = ''

# This is the file name suffix for HTML files (e.g. ".xhtml").
# html_file_suffix = None

# Language to be used for generating the HTML full-text search index.
# Sphinx supports the following languages:
#   'da', 'de', 'en', 'es', 'fi', 'fr', 'h', 'it', 'ja'
#   'nl', 'no', 'pt', 'ro', 'r', 'sv', 'tr', 'zh'
#
# html_search_language = 'en'

# A dictionary with options for the search language support, empty by default.
# 'ja' uses this config value.
# 'zh' user can custom change `jieba` dictionary path.
#
# html_search_options = {'type': 'default'}

# The name of a javascript file (relative to the configuration directory) that
# implements a search results scorer. If empty, the default will be used.
#
# html_search_scorer = 'scorer.js'

# Output file base name for HTML help builder.
htmlhelp_basename = 'EuropeanXFELOfflineCalibrationdoc'

# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
     # The paper size ('letterpaper' or 'a4paper').
     #
     # 'papersize': 'letterpaper',

     # The font size ('10pt', '11pt' or '12pt').
     #
     # 'pointsize': '10pt',

     # Additional stuff for the LaTeX preamble.
     #
     # 'preamble': '',

     # Latex figure (float) alignment
     #
     # 'figure_align': 'htbp',
    'extraclassoptions': 'openany, oneside',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
    (master_doc, 'EuropeanXFELOfflineCalibration.tex', 'European XFEL Offline Calibration Documentation',
     'The European XFEL Detector Group', 'manual', True),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
#
# latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#
# latex_use_parts = False

# If true, show page references after internal links.
#
# latex_show_pagerefs = False

# If true, show URL addresses after external links.
#
# latex_show_urls = False

# Documents to append as an appendix to all manuals.
#
# latex_appendices = []

# It false, will not define \strong, \code, 	itleref, \crossref ... but only
# \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added
# packages.
#
# latex_keep_old_macro_names = True

# If false, no module index is generated.
#
# latex_domain_indices = True


# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'europeanxfelofflinecalibration', 'European XFEL Offline Calibration Documentation',
     [author], 1)
]

# If true, show URL addresses after external links.
#
# man_show_urls = False


# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (master_doc, 'EuropeanXFELOfflineCalibration', 'European XFEL Offline Calibration Documentation',
     author, 'EuropeanXFELOfflineCalibration', 'One line description of project.',
     'Miscellaneous'),
]

# Documents to append as an appendix to all manuals.
#
# texinfo_appendices = []

# If false, no module index is generated.
#
# texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.
#
# texinfo_show_urls = 'footnote'

# If true, do not generate a @detailmenu in the "Top" node's menu.
#
# texinfo_no_detailmenu = False


# Example configuration for intersphinx: refer to the Python standard library.
intersphinx_mapping = {'https://docs.python.org/': None}



# first install pandoc if necessary, this is mainly meant for the RTD builds
try:
    from nbconvert.utils.pandoc import check_pandoc_version
    check_pandoc_version()
    print("Pandoc was found!")
except:
    print("Installing Pandoc!")
    from subprocess import check_call
    pandoc_url = "https://github.com/jgm/pandoc/releases/download/2.2.1/pandoc-2.2.1-1-amd64.deb"
    pandoc_pack = "pandoc-2.2.1-1-amd64.deb"
    check_call(["wget", pandoc_url])
    check_call(["dpkg", "-i", pandoc_pack])

import os
from subprocess import check_output
from textwrap import dedent, indent

import nbformat
from nbconvert import RSTExporter

# generate the list of available notebooks
from xfel_calibrate import notebooks

rst_exporter = RSTExporter()
with open("available_notebooks.rst", "w") as f:
    f.write(dedent("""
            .. _available_notebooks:

            Available Notebooks
            ===================

            The following notebooks are currently integrated into the European XFEL
            Offline Calibration tool chain.


            """))

    for detector in sorted(notebooks.notebooks.keys()):
        values = notebooks.notebooks[detector]
        f.write("{}\n".format(detector))
        f.write("{}\n".format("-"*len(detector)))
        f.write("\n")

        for caltype in sorted(values.keys()):
            data = values[caltype]
            if data.get("notebook", None) is None:
                continue
            nbpath = os.path.abspath("{}/../../../{}".format(__file__, data["notebook"]))
            with open(nbpath, "r") as nf:
                nb = nbformat.read(nf, as_version=4)
                def first_markdown_cell(nb):
                    for cell in nb.cells:
                        if cell.cell_type == 'markdown':
                            return cell
                mdcell = first_markdown_cell(nb)
                nb.cells = [mdcell]  # we only want this single cell
                body, _ = rst_exporter.from_notebook_node(nb)
                adjusted = []
                # adjust titles
                for line in body.split("\n"):
                    if line.startswith("=="):
                        line = line.replace("=", "+")
                    if line.startswith("--"):
                        line = line.replace("-", "~")
                    adjusted.append(line)
                f.write("\n".join(adjusted))
                f.write("\n")

            f.write("To invoke this notebook and display help use:\n\n")
            f.write(".. code-block:: bash\n\n")
            f.write("    xfel-calibrate {} {} --help\n\n".format(detector, caltype))
            f.write("The full parameter list of this notebook (with defaults is): \n\n")
            f.write(".. code-block:: bash\n\n")
            nb_help = ["xfel-calibrate", detector, caltype, "--help"]
            output = check_output(nb_help).decode('utf8')
            f.write(indent(output.replace("DETECTOR", detector).replace("TYPE", caltype), " "*4))
            f.write("\n\n")

# add test results
test_artefact_dir = os.path.realpath("../../tests/legacy/artefacts")

import shutil
import textwrap
from datetime import datetime
from uuid import uuid4

import tabulate
from dateutil.parser import parse
from lxml import etree


def xml_to_rst_report(xml, git_tag, reports=[]):
    e = etree.fromstring(xml.encode())
    rst = [""]
    rst += ["Test execution for {test_name} on {ex_date}"]
    test_name, ex_date = e.get("name").split("-")
    ex_date = parse(ex_date)
    rst[-1] = rst[-1].format(test_name=test_name, ex_date=ex_date)
    rst += ["="*len(rst[-1])]
    rst += [""]

    num_tests = e.get("tests")
    num_err = int(e.get("errors"))
    num_fail = int(e.get("failures"))
    num_skip = int(e.get("skipped"))

    # create a summary header
    if num_err + num_fail == 0:
        rst += [":header-passed:`✓`"]
    else:
        rst += [":header-failed:`❌`"]

    if num_skip > 0:
        rst[-1] += ":header-skipped:`⚠`"
    rst += [""]

    # give a summary
    rst += [":Git tag: {git_tag}".format(git_tag=git_tag)]
    rst += [":Tests: {num_tests}".format(num_tests=num_tests)]
    rst += [":Errors: {num_err}".format(num_err=num_err)]
    rst += [":Failures: {num_fail}".format(num_fail=num_fail)]
    rst += [":Skipped: {num_skip}".format(num_skip=num_skip)]
    rst += [":Duration: {duration}s".format(duration=e.get("time"))]
    for rname, rpath in reports:
        rst += [":Report: `{} <{}>`_".format(rname, rpath)]
    rst += [""]

    # now the details
    rst += ["Detailed Results"]
    rst += ["-"*len(rst[-1])]
    rst += [""]

    detailed_failures = []
    rows = []
    for child in e:
        if child.tag != "testcase":
            continue
        name = child.get("name")
        extime = child.get("time")
        status = ":passed:`passed`"
        msg = ""
        etype = ""
        if len(child):  # children are pressent so test failed or skipped
            detail = child[0]
            etype = detail.get("type")
            msg = detail.get("message")
            if etype == "skip":
                status = ":skipped:`skipped`"
            else:
                status= ":failed:`failed`"
                detailed_failures.append((name, detail.text))
        msg = "\n".join(textwrap.wrap(msg, 20))
        row = [status, name, etype, msg, extime ]
        rows.append(row)

    header = ["Result", "Test", "Error", "Message", "Duration (s)"]
    tblrst =  tabulate.tabulate(rows, headers=header, tablefmt="rst")
    rst += tblrst.split("\n")
    rst += [""]

    for test, report in detailed_failures:
        rst += ["Failure report for: {}".format(test)]
        rst += ["~"*len(rst[-1])]
        rst += [""]
        rst += [".. code-block:: python"]
        rst += textwrap.indent(report, " "*4).split("\n")
        rst += [""]

    do_console = False
    for child in e:
        if child.tag == "system-out" and len(child.text.strip()):
            do_console = True
            break

    if do_console:

        # console output
        rst += ["Console Output"]
        rst += ["-"*len(rst[-1])]
        rst += [""]

        for child in e:
            if child.tag != "system-out":
                continue

            rst += [".. code-block:: console"]
            rst += textwrap.indent(child.text, " "*4).split("\n")


    return "\n".join(rst)

def sorted_dir(folder):
    def getmtime(name):
        path = os.path.join(folder, name)
        return os.path.getmtime(path)

    sort = sorted(os.listdir(folder), key=getmtime, reverse=True)
    return [(s, datetime.fromtimestamp(getmtime(s))) for s in sort]

header = """
Test Results
++++++++++++

Results are organized by git commit, and sorted descending by date.

Contents:

.. toctree::
   :maxdepth: 2


"""
if not os.path.exists("./test_rsts"):
    os.makedirs("./test_rsts")
with open("test_results.rst", "w") as f:
    f.write(header)
    for commit, modtime in sorted_dir(test_artefact_dir):
        with open("./test_rsts/{}.rst".format(commit), "w") as fr:
            rst = [".. include:: roles.rst"]
            rst += [""]
            rst += ["{} - {}".format(commit[:8], modtime)]
            rst += ["+"*len(rst[-1])]
            rst += [""]
            fr.write("\n".join(rst))

            # copy reports
            pdfs = glob.glob("{}/{}/*/*.pdf".format(test_artefact_dir, commit))
            if not os.path.exists("./_static/reports/{}".format(commit)):
                os.makedirs("./_static/reports/{}".format(commit))
            reports = {}
            for pdf in pdfs:
                ppath = "{}/{}.pdf".format(commit, uuid4())
                shutil.copyfile(pdf, "./_static/reports/{}".format(ppath))
                rloc = pdf.split("/")[-2]
                rlist = reports.get(rloc, [])
                rname = os.path.basename(pdf).split(".")[0]
                rlist.append((rname, "../_static/reports/{}".format(ppath)))
                reports[rloc] = rlist

            xmls = glob.glob("{}/{}/*/TEST*.xml".format(test_artefact_dir, commit))
            for xml in xmls:
                rloc = xml.split("/")[-2]
                with open(xml, "r") as xf:
                    xs = xf.read()
                    rst = xml_to_rst_report(xs, commit, reports=reports.get(rloc, []))
                    fr.write(rst)
            f.write("   test_rsts/{}\n".format(commit))
def setup(app):
    app.add_stylesheet('css/test_decorators.css')




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#


import importlib
import sys
import os.path
from six import string_types

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
        # Sphinx >= 1.3 supports list/tuple to define multiple suffixes
        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
        # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes
        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    theme = importlib.import_module('sphinx_rtd_theme')
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'http://rtd.xfel.eu/websupport'
    websupport2_static_url = '/static/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "latest",
    'version_slug': "latest",
    'MEDIA_URL': "media/",
    'STATIC_URL': "/static/",
    'PRODUCTION_DOMAIN': "rtd.xfel.eu",
    'versions': [
    ("latest", "/en/latest/"),
    ("stable", "/en/stable/"),
    ("doc-commonspace", "/en/doc-commonspace/"),
    ],
    'downloads': [ 
    ],
    'subprojects': [ 
    ],
    'slug': 'european-xfel-offline-calibration',
    'name': u'European XFEL Offline Calibration',
    'rtd_language': u'en',
    'programming_language': u'py',
    'canonical_url': 'http://rtd.xfel.eu/docs/european-xfel-offline-calibration/en/latest/',
    'analytics_code': 'None',
    'single_version': False,
    'conf_py_path': '/docs/source/',
    'api_host': 'http://rtd.xfel.eu',
    'github_user': 'None',
    'proxied_api_host': '/_',
    'github_repo': 'None',
    'github_version': 'doc/run_rtd',
    'display_github': False,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'doc/run_rtd',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'doc/run_rtd',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'docsearch_disabled': False,
    'user_analytics_code': '',
    'global_analytics_code': 'None',
    'commit': '7f71f474',
}




if 'html_context' in globals():
    
    html_context.update(context)
    
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

# Add External version warning banner to the external version documentation
if 'branch' == 'external':
    extensions.insert(1, "readthedocs_ext.external_version_warning")

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
    language_user in ('zh_CN', 'zh_TW'),
    project_language in ('zh_CN', 'zh_TW'),
])

japanese = any([
    language_user == 'ja',
    project_language == 'ja',
])

if chinese:
    latex_engine = latex_engine_user or 'xelatex'

    latex_elements_rtd = {
        'preamble': '\\usepackage[UTF8]{ctex}\n',
    }
    latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
    latex_engine = latex_engine_user or 'platex'

# Make sure our build directory is always excluded
exclude_patterns = globals().get('exclude_patterns', [])
exclude_patterns.extend(['_build'])

[rtd-command-info] start-time: 2021-11-23T16:09:41.557757Z, end-time: 2021-11-23T16:10:46.908838Z, duration: 65, exit-code: 0
python /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/latest/bin/sphinx-build -T -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html
Running Sphinx v1.8.5
[NbConvertApp] Converting notebook ../../../notebooks/Tutorial/calversion.ipynb to rst
[NbConvertApp] Writing 4434 bytes to ./calversion.rst
Pandoc was found!
loading translations [en]... done
making output directory...
loading intersphinx inventory from https://docs.python.org/objects.inv...
intersphinx inventory has moved: https://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv
building [mo]: targets for 0 po files that are out of date
building [readthedocs]: targets for 15 source files that are out of date
updating environment: 15 added, 0 changed, 0 removed
reading sources... [  6%] _notebooks/calversion
reading sources... [ 13%] _notebooks/index
reading sources... [ 20%] advanced
reading sources... [ 26%] available_notebooks
reading sources... [ 33%] configuration
reading sources... [ 40%] how_it_works
reading sources... [ 46%] index
reading sources... [ 53%] installation
reading sources... [ 60%] test_results
reading sources... [ 66%] test_rsts/9088fa11013afe7bb5d4231fd4170c96e34db520
reading sources... [ 73%] test_rsts/ca3b513c64c05a29ae0f530c91b04349417c4fa0
reading sources... [ 80%] test_rsts/roles
reading sources... [ 86%] testing
reading sources... [ 93%] tutorial
reading sources... [100%] workflow

/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/_notebooks/calversion.rst:2: WARNING: Explicit markup ends without a blank line; unexpected unindent.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/advanced.rst:46: WARNING: Literal block expected; none found.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/how_it_works.rst:6: WARNING: Unknown target name: "nbconvert".
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [  6%] _notebooks/calversion
writing output... [ 13%] _notebooks/index
writing output... [ 20%] advanced
writing output... [ 26%] available_notebooks
writing output... [ 33%] configuration
writing output... [ 40%] how_it_works
writing output... [ 46%] index
writing output... [ 53%] installation
writing output... [ 60%] test_results
writing output... [ 66%] test_rsts/9088fa11013afe7bb5d4231fd4170c96e34db520
writing output... [ 73%] test_rsts/ca3b513c64c05a29ae0f530c91b04349417c4fa0
writing output... [ 80%] test_rsts/roles
writing output... [ 86%] testing
writing output... [ 93%] tutorial
writing output... [100%] workflow

/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:43: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:733: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:940: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:1092: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:1273: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:1465: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:1626: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:1794: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:1970: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:2111: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:2262: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:2402: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:2771: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:2868: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:3040: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:3210: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:3369: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:3543: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:3733: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:3910: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:4046: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:4178: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:4309: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:5027: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:5184: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/latest/docs/source/available_notebooks.rst:5314: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
generating indices... genindex
writing additional pages... search
copying static files... done
copying readthedocs static files... done
copying searchtools... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 29 warnings.

The HTML pages are in _build/html.