Read the Docs build information
Build id: 24915
Project: european-xfel-offline-calibration
Version: stable
Commit: f148f2aecc4af299e15106fa557e3156c700b6be
Date: 2022-11-23T11:14:39.293126Z
State: finished
Success: True


[rtd-command-info] start-time: 2022-11-23T11:14:42.991858Z, end-time: 2022-11-23T11:15:00.637338Z, duration: 17, exit-code: 0
git clone --no-single-branch --depth 50 http://git.xfel.eu/gitlab/detectors/pycalibration.git .
Cloning into '.'...

[rtd-command-info] start-time: 2022-11-23T11:15:00.920058Z, end-time: 2022-11-23T11:15:01.690622Z, duration: 0, exit-code: 0
git checkout --force f148f2aecc4af299e15106fa557e3156c700b6be
Note: checking out 'f148f2aecc4af299e15106fa557e3156c700b6be'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at f148f2ae Fix index location for ROI instrument output

[rtd-command-info] start-time: 2022-11-23T11:15:01.774952Z, end-time: 2022-11-23T11:15:01.834751Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2022-11-23T11:15:03.622674Z, end-time: 2022-11-23T11:15:08.478869Z, duration: 4, exit-code: 0
python3.8 -mvirtualenv /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable
Using base prefix '/home/docs/.pyenv/versions/3.8.0'
New python executable in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/bin/python3.8
Also creating executable in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2022-11-23T11:15:08.565593Z, end-time: 2022-11-23T11:15:09.450464Z, duration: 0, exit-code: 0
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/bin/python -m pip install --upgrade --no-cache-dir pip
Requirement already satisfied: pip in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/lib/python3.8/site-packages (22.3.1)

[rtd-command-info] start-time: 2022-11-23T11:15:09.535010Z, end-time: 2022-11-23T11:15:34.435414Z, duration: 24, exit-code: 0
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/bin/python -m pip install --upgrade --no-cache-dir jinja2==2.11.3 markupsafe==2.0.1 Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1
Collecting jinja2==2.11.3
  Downloading Jinja2-2.11.3-py2.py3-none-any.whl (125 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 125.7/125.7 kB 3.3 MB/s eta 0:00:00
Collecting markupsafe==2.0.1
  Downloading MarkupSafe-2.0.1-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (30 kB)
Collecting Pygments==2.3.1
  Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 849.5/849.5 kB 18.9 MB/s eta 0:00:00
Collecting setuptools==41.0.1
  Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 576.0/576.0 kB 182.5 MB/s eta 0:00:00
Collecting docutils==0.14
  Downloading docutils-0.14-py3-none-any.whl (543 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 543.2/543.2 kB 207.3 MB/s eta 0:00:00
Collecting mock==1.0.1
  Downloading mock-1.0.1.zip (861 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 861.9/861.9 kB 181.8 MB/s eta 0:00:00
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting pillow==5.4.1
  Downloading Pillow-5.4.1.tar.gz (16.0 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.0/16.0 MB 137.1 MB/s eta 0:00:00
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting alabaster!=0.7.5,<0.8,>=0.7
  Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB)
Collecting commonmark==0.8.1
  Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 47.4/47.4 kB 162.3 MB/s eta 0:00:00
Collecting recommonmark==0.5.0
  Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB)
Collecting sphinx<2
  Downloading Sphinx-1.8.6-py2.py3-none-any.whl (3.1 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 227.7 MB/s eta 0:00:00
Collecting sphinx-rtd-theme<0.5
  Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.4/6.4 MB 144.1 MB/s eta 0:00:00
Collecting readthedocs-sphinx-ext<1.1
  Downloading readthedocs_sphinx_ext-1.0.4-py2.py3-none-any.whl (28 kB)
Collecting future
  Downloading future-0.18.2.tar.gz (829 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 829.2/829.2 kB 225.2 MB/s eta 0:00:00
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting six>=1.5
  Downloading six-1.16.0-py2.py3-none-any.whl (11 kB)
Collecting packaging
  Downloading packaging-21.3-py3-none-any.whl (40 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 40.8/40.8 kB 78.8 MB/s eta 0:00:00
Collecting babel!=2.0,>=1.3
  Downloading Babel-2.11.0-py3-none-any.whl (9.5 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.5/9.5 MB 136.7 MB/s eta 0:00:00
Collecting sphinxcontrib-websupport
  Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB)
Collecting snowballstemmer>=1.1
  Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 93.0/93.0 kB 195.9 MB/s eta 0:00:00
Collecting imagesize
  Downloading imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB)
Collecting requests>=2.0.0
  Downloading requests-2.28.1-py3-none-any.whl (62 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.8/62.8 kB 183.4 MB/s eta 0:00:00
Collecting pytz>=2015.7
  Downloading pytz-2022.6-py2.py3-none-any.whl (498 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 498.1/498.1 kB 222.6 MB/s eta 0:00:00
Collecting urllib3<1.27,>=1.21.1
  Downloading urllib3-1.26.12-py2.py3-none-any.whl (140 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 140.4/140.4 kB 191.1 MB/s eta 0:00:00
Collecting charset-normalizer<3,>=2
  Downloading charset_normalizer-2.1.1-py3-none-any.whl (39 kB)
Collecting certifi>=2017.4.17
  Downloading certifi-2022.9.24-py3-none-any.whl (161 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 161.1/161.1 kB 209.2 MB/s eta 0:00:00
Collecting idna<4,>=2.5
  Downloading idna-3.4-py3-none-any.whl (61 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.5/61.5 kB 157.6 MB/s eta 0:00:00
Collecting pyparsing!=3.0.5,>=2.0.2
  Downloading pyparsing-3.0.9-py3-none-any.whl (98 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 98.3/98.3 kB 192.7 MB/s eta 0:00:00
Collecting sphinxcontrib-serializinghtml
  Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 94.0/94.0 kB 196.6 MB/s eta 0:00:00
Building wheels for collected packages: mock, pillow, future
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23753 sha256=2968e85179ee404109afbce646fc7ca7aafbf4e5f8f9b7f21ebf919a052a1ddf
  Stored in directory: /tmp/pip-ephem-wheel-cache-m3ym0w5m/wheels/17/19/d4/cf0d726b5d1c635d98e82c451a566e84870a10373f29ce6517
  Building wheel for pillow (setup.py): started
  Building wheel for pillow (setup.py): finished with status 'done'
  Created wheel for pillow: filename=Pillow-5.4.1-cp38-cp38-linux_x86_64.whl size=1262515 sha256=02b38ed053d285c334f174eb07c5347a2b02551bfe16eea4b66ac147ed7f4ed6
  Stored in directory: /tmp/pip-ephem-wheel-cache-m3ym0w5m/wheels/b1/e9/c4/aaa279191f4df841f7bba11edcf38095a0fc829abe9ab84b68
  Building wheel for future (setup.py): started
  Building wheel for future (setup.py): finished with status 'done'
  Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491059 sha256=889961400e36f9f709a4ab8d105b075a521ca8d9bd9ba94e70031f382258fa04
  Stored in directory: /tmp/pip-ephem-wheel-cache-m3ym0w5m/wheels/01/49/0c/4e0a697824c7bd6516afb22e1af9d51427ccd36c74b05a297e
Successfully built mock pillow future
Installing collected packages: snowballstemmer, pytz, Pygments, mock, docutils, alabaster, urllib3, sphinxcontrib-serializinghtml, six, setuptools, pyparsing, pillow, markupsafe, imagesize, idna, future, charset-normalizer, certifi, babel, sphinxcontrib-websupport, requests, packaging, jinja2, commonmark, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark
  Attempting uninstall: setuptools
    Found existing installation: setuptools 65.6.0
    Uninstalling setuptools-65.6.0:
      Successfully uninstalled setuptools-65.6.0
Successfully installed Pygments-2.3.1 alabaster-0.7.12 babel-2.11.0 certifi-2022.9.24 charset-normalizer-2.1.1 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-3.4 imagesize-1.4.1 jinja2-2.11.3 markupsafe-2.0.1 mock-1.0.1 packaging-21.3 pillow-5.4.1 pyparsing-3.0.9 pytz-2022.6 readthedocs-sphinx-ext-1.0.4 recommonmark-0.5.0 requests-2.28.1 setuptools-41.0.1 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.12

[rtd-command-info] start-time: 2022-11-23T11:15:34.542013Z, end-time: 2022-11-23T11:15:42.689482Z, duration: 8, exit-code: 0
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/bin/python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt
Collecting iCalibrationDB@ git+https://xcalgitlab:dxh5vE8fFsEJHvatXjsV@git.xfel.eu/gitlab/detectors/cal_db_interactive.git@2.2.0
  Cloning https://xcalgitlab:****@git.xfel.eu/gitlab/detectors/cal_db_interactive.git (to revision 2.2.0) to /tmp/pip-install-qj3k0893/icalibrationdb_030bb00c0cbf4d67b3b7c25d8061a47d
  Running command git clone --filter=blob:none --quiet 'https://xcalgitlab:****@git.xfel.eu/gitlab/detectors/cal_db_interactive.git' /tmp/pip-install-qj3k0893/icalibrationdb_030bb00c0cbf4d67b3b7c25d8061a47d
  Running command git checkout -q 6e081d03733d9031557bd621feef337c42984cd1
  Resolved https://xcalgitlab:****@git.xfel.eu/gitlab/detectors/cal_db_interactive.git to commit 6e081d03733d9031557bd621feef337c42984cd1
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting h5py
  Downloading h5py-3.7.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (4.5 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.5/4.5 MB 36.6 MB/s eta 0:00:00
Collecting pyzmq
  Downloading pyzmq-24.0.1-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.1 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 205.7 MB/s eta 0:00:00
Collecting python-dateutil
  Downloading python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 247.7/247.7 kB 221.2 MB/s eta 0:00:00
Collecting numpy>=1.14.5
  Downloading numpy-1.23.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.1 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 17.1/17.1 MB 122.5 MB/s eta 0:00:00
Requirement already satisfied: six>=1.5 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/lib/python3.8/site-packages (from python-dateutil->iCalibrationDB@ git+https://xcalgitlab:dxh5vE8fFsEJHvatXjsV@git.xfel.eu/gitlab/detectors/cal_db_interactive.git@2.2.0->-r docs/requirements.txt (line 1)) (1.16.0)
Building wheels for collected packages: iCalibrationDB
  Building wheel for iCalibrationDB (setup.py): started
  Building wheel for iCalibrationDB (setup.py): finished with status 'done'
  Created wheel for iCalibrationDB: filename=iCalibrationDB-2.2.0-py3-none-any.whl size=32964 sha256=09537f58bf06fbffc70adcba366a4d30f26b0fee48e0578ca059cc5ce9a0d6bb
  Stored in directory: /tmp/pip-ephem-wheel-cache-l79n_d8w/wheels/cd/ac/73/60a8168133e185caf51a8ef3a88dab96aa8e87ac2938ed8ace
Successfully built iCalibrationDB
Installing collected packages: pyzmq, python-dateutil, numpy, h5py, iCalibrationDB
Successfully installed h5py-3.7.0 iCalibrationDB-2.2.0 numpy-1.23.5 python-dateutil-2.8.2 pyzmq-24.0.1

[rtd-command-info] start-time: 2022-11-23T11:15:42.775862Z, end-time: 2022-11-23T11:16:56.210316Z, duration: 73, exit-code: 0
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/bin/python -m pip install --upgrade --upgrade-strategy eager --no-cache-dir .[docs]
Processing /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Collecting nbclient==0.5.1
  Downloading nbclient-0.5.1-py3-none-any.whl (65 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 65.7/65.7 kB 2.7 MB/s eta 0:00:00
Collecting metadata-client==3.0.8
  Downloading metadata_client-3.0.8-py3-none-any.whl (109 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 109.9/109.9 kB 6.1 MB/s eta 0:00:00
Collecting matplotlib==3.4.2
  Downloading matplotlib-3.4.2-cp38-cp38-manylinux1_x86_64.whl (10.3 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.3/10.3 MB 85.5 MB/s eta 0:00:00
Collecting pypandoc==1.4
  Downloading pypandoc-1.4.tar.gz (27 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting sharedmem==0.3.8
  Downloading sharedmem-0.3.8.tar.gz (17 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting h5py==3.5.0
  Downloading h5py-3.5.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (4.5 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.5/4.5 MB 171.1 MB/s eta 0:00:00
Collecting pyzmq==23.2.0
  Downloading pyzmq-23.2.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.1 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 232.9 MB/s eta 0:00:00
Collecting extra-geom==1.8.0
  Downloading EXtra_geom-1.8.0-py3-none-any.whl (83 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 83.3/83.3 kB 166.4 MB/s eta 0:00:00
Requirement already satisfied: markupsafe==2.0.1 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/lib/python3.8/site-packages (from European-XFEL-Offline-Calibration==1.0) (2.0.1)
Collecting pyyaml==5.3
  Downloading PyYAML-5.3.tar.gz (268 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 268.2/268.2 kB 214.0 MB/s eta 0:00:00
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting ipython-genutils==0.2.0
  Downloading ipython_genutils-0.2.0-py2.py3-none-any.whl (26 kB)
Collecting dynaconf==3.1.4
  Downloading dynaconf-3.1.4-py2.py3-none-any.whl (197 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 197.5/197.5 kB 205.2 MB/s eta 0:00:00
Collecting karabo-data==0.7.0
  Downloading karabo_data-0.7.0-py3-none-any.whl (126 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 126.7/126.7 kB 192.3 MB/s eta 0:00:00
Collecting astcheck==0.2.5
  Downloading astcheck-0.2.5-py2.py3-none-any.whl (10 kB)
Collecting cfelpyutils==2.0.6
  Downloading cfelpyutils-2.0.6-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (511 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 511.2/511.2 kB 189.5 MB/s eta 0:00:00
Collecting ipykernel==5.1.4
  Downloading ipykernel-5.1.4-py3-none-any.whl (116 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 116.8/116.8 kB 178.5 MB/s eta 0:00:00
Collecting kafka-python==2.0.2
  Downloading kafka_python-2.0.2-py2.py3-none-any.whl (246 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 246.5/246.5 kB 212.6 MB/s eta 0:00:00
Collecting nbformat==5.0.7
  Downloading nbformat-5.0.7-py3-none-any.whl (170 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 170.6/170.6 kB 221.4 MB/s eta 0:00:00
Collecting EXtra-redu==0.0.5
  Downloading EXtra_redu-0.0.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (442 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 443.0/443.0 kB 204.8 MB/s eta 0:00:00
Collecting docutils==0.17.1
  Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 575.5/575.5 kB 227.3 MB/s eta 0:00:00
Collecting extra-data==1.12.0
  Downloading EXtra_data-1.12.0-py3-none-any.whl (133 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.2/133.2 kB 198.9 MB/s eta 0:00:00
Collecting astsearch==0.2.0
  Downloading astsearch-0.2.0-py3-none-any.whl (6.5 kB)
Collecting numpy==1.20.3
  Downloading numpy-1.20.3-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.4 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 15.4/15.4 MB 135.1 MB/s eta 0:00:00
Collecting env-cache==0.1
  Downloading env_cache-0.1-py2.py3-none-any.whl (4.7 kB)
Collecting xarray==2022.3.0
  Downloading xarray-2022.3.0-py3-none-any.whl (870 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 870.9/870.9 kB 210.4 MB/s eta 0:00:00
Collecting ipython==7.12.0
  Downloading ipython-7.12.0-py3-none-any.whl (777 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 777.3/777.3 kB 214.6 MB/s eta 0:00:00
Collecting calibration-client==10.0.0
  Downloading calibration_client-10.0.0-py3-none-any.whl (78 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 78.2/78.2 kB 178.9 MB/s eta 0:00:00
Collecting Cython==0.29.21
  Downloading Cython-0.29.21-cp38-cp38-manylinux1_x86_64.whl (1.9 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.9/1.9 MB 227.7 MB/s eta 0:00:00
Collecting jupyter-console==6.1.0
  Downloading jupyter_console-6.1.0-py2.py3-none-any.whl (21 kB)
Collecting nbparameterise==0.5
  Downloading nbparameterise-0.5-py3-none-any.whl (6.0 kB)
Collecting tabulate==0.8.6
  Downloading tabulate-0.8.6.tar.gz (45 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.5/45.5 kB 136.0 MB/s eta 0:00:00
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting lxml==4.5.0
  Downloading lxml-4.5.0-cp38-cp38-manylinux1_x86_64.whl (5.6 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.6/5.6 MB 155.3 MB/s eta 0:00:00
Collecting nbconvert==5.6.1
  Downloading nbconvert-5.6.1-py2.py3-none-any.whl (455 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 455.1/455.1 kB 217.2 MB/s eta 0:00:00
Collecting dill==0.3.0
  Downloading dill-0.3.0.tar.gz (151 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 151.4/151.4 kB 216.5 MB/s eta 0:00:00
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting gitpython==3.1.0
  Downloading GitPython-3.1.0-py3-none-any.whl (450 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 450.7/450.7 kB 223.6 MB/s eta 0:00:00
Collecting ipyparallel==6.2.4
  Downloading ipyparallel-6.2.4-py2.py3-none-any.whl (198 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 198.6/198.6 kB 220.6 MB/s eta 0:00:00
Requirement already satisfied: python-dateutil==2.8.2 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/lib/python3.8/site-packages (from European-XFEL-Offline-Calibration==1.0) (2.8.2)
Collecting traitlets==4.3.3
  Downloading traitlets-4.3.3-py2.py3-none-any.whl (75 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 75.7/75.7 kB 167.6 MB/s eta 0:00:00
Collecting sphinx==1.8.5
  Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 209.1 MB/s eta 0:00:00
Collecting jupyter-client==7.3.4
  Downloading jupyter_client-7.3.4-py3-none-any.whl (132 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 132.1/132.1 kB 163.6 MB/s eta 0:00:00
Collecting requests==2.22.0
  Downloading requests-2.22.0-py2.py3-none-any.whl (57 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 58.0/58.0 kB 148.2 MB/s eta 0:00:00
Collecting notebook==6.1.5
  Downloading notebook-6.1.5-py3-none-any.whl (9.5 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.5/9.5 MB 128.5 MB/s eta 0:00:00
Collecting princess==0.5
  Downloading princess-0.5-py3-none-any.whl (4.2 kB)
Collecting prettytable==0.7.2
  Downloading prettytable-0.7.2.zip (28 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting iminuit==1.3.8
  Downloading iminuit-1.3.8-cp38-cp38-manylinux2010_x86_64.whl (4.3 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.3/4.3 MB 168.2 MB/s eta 0:00:00
Collecting scipy==1.7.0
  Downloading scipy-1.7.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (28.4 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 28.4/28.4 MB 139.5 MB/s eta 0:00:00
Collecting scikit-learn==0.22.2.post1
  Downloading scikit_learn-0.22.2.post1-cp38-cp38-manylinux1_x86_64.whl (7.0 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.0/7.0 MB 142.1 MB/s eta 0:00:00
Collecting pasha==0.1.1
  Downloading pasha-0.1.1-py3-none-any.whl (11 kB)
Collecting jupyter-core==4.10.0
  Downloading jupyter_core-4.10.0-py3-none-any.whl (87 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 87.3/87.3 kB 189.7 MB/s eta 0:00:00
Collecting Jinja2==2.11.2
  Downloading Jinja2-2.11.2-py2.py3-none-any.whl (125 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 125.8/125.8 kB 211.5 MB/s eta 0:00:00
Collecting nbsphinx
  Downloading nbsphinx-0.8.10-py3-none-any.whl (25 kB)
Collecting oauth2-xfel-client>=6.1
  Downloading oauth2_xfel_client-6.1.0-py3-none-any.whl (9.8 kB)
Requirement already satisfied: pytz in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/lib/python3.8/site-packages (from calibration-client==10.0.0->European-XFEL-Offline-Calibration==1.0) (2022.6)
Collecting oauthlib
  Downloading oauthlib-3.2.2-py3-none-any.whl (151 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 151.7/151.7 kB 174.8 MB/s eta 0:00:00
Collecting requests-oauthlib
  Downloading requests_oauthlib-1.3.1-py2.py3-none-any.whl (23 kB)
Collecting pandas>=1.1.5
  Downloading pandas-1.5.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.2 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.2/12.2 MB 134.1 MB/s eta 0:00:00
Collecting mypy-extensions>=0.4.3
  Downloading mypy_extensions-0.4.3-py2.py3-none-any.whl (4.5 kB)
Collecting euxfel-bunch-pattern>=0.6
  Downloading euxfel_bunch_pattern-0.6-py3-none-any.whl (5.3 kB)
Collecting gitdb<5,>=4.0.1
  Downloading gitdb-4.0.9-py3-none-any.whl (63 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 63.1/63.1 kB 154.0 MB/s eta 0:00:00
Collecting tornado>=4.2
  Downloading tornado-6.2-cp37-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (423 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 424.0/424.0 kB 224.1 MB/s eta 0:00:00
Collecting decorator
  Downloading decorator-5.1.1-py3-none-any.whl (9.1 kB)
Collecting prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0
  Downloading prompt_toolkit-3.0.33-py3-none-any.whl (383 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 383.6/383.6 kB 218.7 MB/s eta 0:00:00
Collecting pickleshare
  Downloading pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB)
Collecting jedi>=0.10
  Downloading jedi-0.18.2-py2.py3-none-any.whl (1.6 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.6/1.6 MB 223.2 MB/s eta 0:00:00
Collecting backcall
  Downloading backcall-0.2.0-py2.py3-none-any.whl (11 kB)
Requirement already satisfied: pygments in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/lib/python3.8/site-packages (from ipython==7.12.0->European-XFEL-Offline-Calibration==1.0) (2.3.1)
Collecting pygments
  Downloading Pygments-2.13.0-py3-none-any.whl (1.1 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 199.0 MB/s eta 0:00:00
Requirement already satisfied: setuptools>=18.5 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/lib/python3.8/site-packages (from ipython==7.12.0->European-XFEL-Offline-Calibration==1.0) (41.0.1)
Collecting setuptools>=18.5
  Downloading setuptools-65.6.0-py3-none-any.whl (1.2 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 218.5 MB/s eta 0:00:00
Collecting pexpect
  Downloading pexpect-4.8.0-py2.py3-none-any.whl (59 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 59.0/59.0 kB 143.6 MB/s eta 0:00:00
Collecting nest-asyncio>=1.5.4
  Downloading nest_asyncio-1.5.6-py3-none-any.whl (5.2 kB)
Collecting entrypoints
  Downloading entrypoints-0.4-py3-none-any.whl (5.3 kB)
Collecting msgpack-numpy>=0.4.3
  Downloading msgpack_numpy-0.4.8-py2.py3-none-any.whl (6.9 kB)
Collecting fabio
  Downloading fabio-0.14.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.2 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.2/4.2 MB 172.9 MB/s eta 0:00:00
Collecting msgpack>=0.5.4
  Downloading msgpack-1.0.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (322 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 322.5/322.5 kB 216.5 MB/s eta 0:00:00
Collecting karabo-bridge
  Downloading karabo_bridge-0.6.2.tar.gz (17 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting cycler>=0.10
  Downloading cycler-0.11.0-py3-none-any.whl (6.4 kB)
Collecting kiwisolver>=1.0.1
  Downloading kiwisolver-1.4.4-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (1.2 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 199.1 MB/s eta 0:00:00
Requirement already satisfied: pyparsing>=2.2.1 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/lib/python3.8/site-packages (from matplotlib==3.4.2->European-XFEL-Offline-Calibration==1.0) (3.0.9)
Collecting pillow>=6.2.0
  Downloading Pillow-9.3.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.2 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.2/3.2 MB 126.6 MB/s eta 0:00:00
Collecting async-generator
  Downloading async_generator-1.10-py3-none-any.whl (18 kB)
Collecting defusedxml
  Downloading defusedxml-0.7.1-py2.py3-none-any.whl (25 kB)
Collecting bleach
  Downloading bleach-5.0.1-py3-none-any.whl (160 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 160.9/160.9 kB 205.8 MB/s eta 0:00:00
Collecting testpath
  Downloading testpath-0.6.0-py3-none-any.whl (83 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 83.9/83.9 kB 176.9 MB/s eta 0:00:00
Collecting mistune<2,>=0.8.1
  Downloading mistune-0.8.4-py2.py3-none-any.whl (16 kB)
Collecting pandocfilters>=1.4.1
  Downloading pandocfilters-1.5.0-py2.py3-none-any.whl (8.7 kB)
Collecting jsonschema!=2.5.0,>=2.4
  Downloading jsonschema-4.17.1-py3-none-any.whl (90 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 90.2/90.2 kB 201.9 MB/s eta 0:00:00
Collecting prometheus-client
  Downloading prometheus_client-0.15.0-py3-none-any.whl (60 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 60.1/60.1 kB 158.5 MB/s eta 0:00:00
Collecting Send2Trash
  Downloading Send2Trash-1.8.0-py3-none-any.whl (18 kB)
Collecting terminado>=0.8.3
  Downloading terminado-0.17.0-py3-none-any.whl (16 kB)
Collecting argon2-cffi
  Downloading argon2_cffi-21.3.0-py3-none-any.whl (14 kB)
Requirement already satisfied: pip>=8.1.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/lib/python3.8/site-packages (from pypandoc==1.4->European-XFEL-Offline-Calibration==1.0) (22.3.1)
Requirement already satisfied: wheel>=0.25.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/lib/python3.8/site-packages (from pypandoc==1.4->European-XFEL-Offline-Calibration==1.0) (0.38.4)
Requirement already satisfied: six>=1.5 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/lib/python3.8/site-packages (from python-dateutil==2.8.2->European-XFEL-Offline-Calibration==1.0) (1.16.0)
Collecting chardet<3.1.0,>=3.0.2
  Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.4/133.4 kB 196.4 MB/s eta 0:00:00
Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1
  Downloading urllib3-1.25.11-py2.py3-none-any.whl (127 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 128.0/128.0 kB 205.3 MB/s eta 0:00:00
Requirement already satisfied: certifi>=2017.4.17 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/lib/python3.8/site-packages (from requests==2.22.0->European-XFEL-Offline-Calibration==1.0) (2022.9.24)
Collecting idna<2.9,>=2.5
  Downloading idna-2.8-py2.py3-none-any.whl (58 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 58.6/58.6 kB 99.2 MB/s eta 0:00:00
Collecting joblib>=0.11
  Downloading joblib-1.2.0-py3-none-any.whl (297 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 298.0/298.0 kB 205.0 MB/s eta 0:00:00
Requirement already satisfied: imagesize in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/lib/python3.8/site-packages (from sphinx==1.8.5->European-XFEL-Offline-Calibration==1.0) (1.4.1)
Requirement already satisfied: snowballstemmer>=1.1 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/lib/python3.8/site-packages (from sphinx==1.8.5->European-XFEL-Offline-Calibration==1.0) (2.2.0)
Requirement already satisfied: alabaster<0.8,>=0.7 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/lib/python3.8/site-packages (from sphinx==1.8.5->European-XFEL-Offline-Calibration==1.0) (0.7.12)
Requirement already satisfied: babel!=2.0,>=1.3 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/lib/python3.8/site-packages (from sphinx==1.8.5->European-XFEL-Offline-Calibration==1.0) (2.11.0)
Requirement already satisfied: packaging in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/lib/python3.8/site-packages (from sphinx==1.8.5->European-XFEL-Offline-Calibration==1.0) (21.3)
Requirement already satisfied: sphinxcontrib-websupport in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/lib/python3.8/site-packages (from sphinx==1.8.5->European-XFEL-Offline-Calibration==1.0) (1.2.4)
Collecting nbsphinx
  Downloading nbsphinx-0.8.9-py3-none-any.whl (25 kB)
  Downloading nbsphinx-0.8.8-py3-none-any.whl (25 kB)
Collecting smmap<6,>=3.0.1
  Downloading smmap-5.0.0-py3-none-any.whl (24 kB)
Collecting parso<0.9.0,>=0.8.0
  Downloading parso-0.8.3-py2.py3-none-any.whl (100 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100.8/100.8 kB 177.5 MB/s eta 0:00:00
Collecting importlib-resources>=1.4.0
  Downloading importlib_resources-5.10.0-py3-none-any.whl (34 kB)
Collecting pkgutil-resolve-name>=1.3.10
  Downloading pkgutil_resolve_name-1.3.10-py3-none-any.whl (4.7 kB)
Collecting pyrsistent!=0.17.0,!=0.17.1,!=0.17.2,>=0.14.0
  Downloading pyrsistent-0.19.2-py3-none-any.whl (57 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 57.5/57.5 kB 166.1 MB/s eta 0:00:00
Collecting attrs>=17.4.0
  Downloading attrs-22.1.0-py2.py3-none-any.whl (58 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 58.8/58.8 kB 175.2 MB/s eta 0:00:00
Collecting wcwidth
  Downloading wcwidth-0.2.5-py2.py3-none-any.whl (30 kB)
Collecting ptyprocess
  Downloading ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB)
Collecting argon2-cffi-bindings
  Downloading argon2_cffi_bindings-21.2.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (86 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 86.2/86.2 kB 172.4 MB/s eta 0:00:00
Collecting webencodings
  Downloading webencodings-0.5.1-py2.py3-none-any.whl (11 kB)
Requirement already satisfied: sphinxcontrib-serializinghtml in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/lib/python3.8/site-packages (from sphinxcontrib-websupport->sphinx==1.8.5->European-XFEL-Offline-Calibration==1.0) (1.1.5)
Collecting zipp>=3.1.0
  Downloading zipp-3.10.0-py3-none-any.whl (6.2 kB)
Collecting cffi>=1.0.1
  Downloading cffi-1.15.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (442 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 442.7/442.7 kB 214.5 MB/s eta 0:00:00
Collecting pycparser
  Downloading pycparser-2.21-py2.py3-none-any.whl (118 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 118.7/118.7 kB 204.8 MB/s eta 0:00:00
Building wheels for collected packages: dill, prettytable, pypandoc, pyyaml, sharedmem, tabulate, European-XFEL-Offline-Calibration, karabo-bridge
  Building wheel for dill (setup.py): started
  Building wheel for dill (setup.py): finished with status 'done'
  Created wheel for dill: filename=dill-0.3.0-py3-none-any.whl size=77511 sha256=d2ef4ea3d62b7dbc8fe33dc60eac3f493a8a1e9cc31ea83c9bbf80c57da78209
  Stored in directory: /tmp/pip-ephem-wheel-cache-il4nb6uo/wheels/86/e7/39/645b0b0a1490463da364db50d46d902f12676b51d552b6521f
  Building wheel for prettytable (setup.py): started
  Building wheel for prettytable (setup.py): finished with status 'done'
  Created wheel for prettytable: filename=prettytable-0.7.2-py3-none-any.whl size=13699 sha256=9921cbffe263e7f2cf488385ebf83a485ac1ea6fbe4efe0721b2ca19a3bb4994
  Stored in directory: /tmp/pip-ephem-wheel-cache-il4nb6uo/wheels/a9/b2/00/2e9bd731e2b62d0bc8bf73b24c149cd42b823982684fb2ccb9
  Building wheel for pypandoc (setup.py): started
  Building wheel for pypandoc (setup.py): finished with status 'done'
  Created wheel for pypandoc: filename=pypandoc-1.4-py3-none-any.whl size=16717 sha256=a762fc06804b725da4bdbc1a43b9066e912395847faace49998862bf05d7c1ed
  Stored in directory: /tmp/pip-ephem-wheel-cache-il4nb6uo/wheels/29/e0/73/2d1c82c85b4c12a80b803f35f9ae00b4b90eae87b7ef457184
  Building wheel for pyyaml (setup.py): started
  Building wheel for pyyaml (setup.py): finished with status 'done'
  Created wheel for pyyaml: filename=PyYAML-5.3-cp38-cp38-linux_x86_64.whl size=44227 sha256=206cdbc17e489c5b1c5356170c642078e14bccf0660c8b58a1dc87b7e9bc56ce
  Stored in directory: /tmp/pip-ephem-wheel-cache-il4nb6uo/wheels/bd/5b/c7/484aa649d398ccf0bf383397aba76dceca57babd09e3df1226
  Building wheel for sharedmem (setup.py): started
  Building wheel for sharedmem (setup.py): finished with status 'done'
  Created wheel for sharedmem: filename=sharedmem-0.3.8-py3-none-any.whl size=18342 sha256=11bea36f3ea7b74cac63e4ee0abd7d71f5257faae960d8cbd0c1967ccc0dfa35
  Stored in directory: /tmp/pip-ephem-wheel-cache-il4nb6uo/wheels/14/2a/4f/28f159a0c99747754cd3989c1d4ae26ff454b7744ffff22ebe
  Building wheel for tabulate (setup.py): started
  Building wheel for tabulate (setup.py): finished with status 'done'
  Created wheel for tabulate: filename=tabulate-0.8.6-py3-none-any.whl size=23272 sha256=a5aca14372b50d089bbb97bd51af1677e7d3b59c1fcc7ed3453433f94f3c0d9c
  Stored in directory: /tmp/pip-ephem-wheel-cache-il4nb6uo/wheels/94/5a/75/1218d6c325ee94670612f286a231c372c365b3a4e05ed8c65f
  Building wheel for European-XFEL-Offline-Calibration (pyproject.toml): started
  Building wheel for European-XFEL-Offline-Calibration (pyproject.toml): finished with status 'done'
  Created wheel for European-XFEL-Offline-Calibration: filename=European_XFEL_Offline_Calibration-1.0-cp38-cp38-linux_x86_64.whl size=1956416 sha256=bcf608c387445501b6b5955cdc3dde001e4e1433ee37c051ba029aea67686ebf
  Stored in directory: /tmp/pip-ephem-wheel-cache-il4nb6uo/wheels/0c/d4/8b/e73668e11caadc779a42a8419d810d67d178ec04a1e153d7b4
  Building wheel for karabo-bridge (setup.py): started
  Building wheel for karabo-bridge (setup.py): finished with status 'done'
  Created wheel for karabo-bridge: filename=karabo_bridge-0.6.2-py3-none-any.whl size=23573 sha256=450811096def2b5b352a4ad10045cbeee05e1d16348a644c5142ce3bd41ff65e
  Stored in directory: /tmp/pip-ephem-wheel-cache-il4nb6uo/wheels/c7/0e/ae/e4f42220f8dd5b8cdfc10debfb791a37622b47508ed0b2c8e5
Successfully built dill prettytable pypandoc pyyaml sharedmem tabulate European-XFEL-Offline-Calibration karabo-bridge
Installing collected packages: webencodings, wcwidth, tabulate, Send2Trash, ptyprocess, prettytable, pickleshare, mypy-extensions, msgpack, mistune, kafka-python, ipython-genutils, env-cache, dynaconf, chardet, backcall, astcheck, zipp, urllib3, tornado, testpath, smmap, setuptools, pyzmq, pyyaml, pyrsistent, pygments, pycparser, prompt-toolkit, prometheus-client, pkgutil-resolve-name, pillow, pexpect, parso, pandocfilters, oauthlib, numpy, nest-asyncio, lxml, kiwisolver, joblib, Jinja2, idna, entrypoints, docutils, dill, defusedxml, decorator, Cython, cycler, bleach, attrs, async-generator, astsearch, traitlets, terminado, sharedmem, scipy, requests, pypandoc, pasha, pandas, msgpack-numpy, matplotlib, jedi, importlib-resources, iminuit, h5py, gitdb, fabio, euxfel-bunch-pattern, cffi, xarray, sphinx, scikit-learn, requests-oauthlib, karabo-bridge, jupyter-core, jsonschema, ipython, gitpython, cfelpyutils, argon2-cffi-bindings, oauth2-xfel-client, nbformat, karabo-data, jupyter-client, extra-geom, extra-data, argon2-cffi, nbconvert, nbclient, metadata-client, ipykernel, EXtra-redu, calibration-client, princess, notebook, nbsphinx, nbparameterise, jupyter-console, ipyparallel, European-XFEL-Offline-Calibration
  Attempting uninstall: urllib3
    Found existing installation: urllib3 1.26.12
    Uninstalling urllib3-1.26.12:
      Successfully uninstalled urllib3-1.26.12
  Attempting uninstall: setuptools
    Found existing installation: setuptools 41.0.1
    Uninstalling setuptools-41.0.1:
      Successfully uninstalled setuptools-41.0.1
  Attempting uninstall: pyzmq
    Found existing installation: pyzmq 24.0.1
    Uninstalling pyzmq-24.0.1:
      Successfully uninstalled pyzmq-24.0.1
  Attempting uninstall: pygments
    Found existing installation: Pygments 2.3.1
    Uninstalling Pygments-2.3.1:
      Successfully uninstalled Pygments-2.3.1
  Attempting uninstall: pillow
    Found existing installation: Pillow 5.4.1
    Uninstalling Pillow-5.4.1:
      Successfully uninstalled Pillow-5.4.1
  Attempting uninstall: numpy
    Found existing installation: numpy 1.23.5
    Uninstalling numpy-1.23.5:
      Successfully uninstalled numpy-1.23.5
  Attempting uninstall: Jinja2
    Found existing installation: Jinja2 2.11.3
    Uninstalling Jinja2-2.11.3:
      Successfully uninstalled Jinja2-2.11.3
  Attempting uninstall: idna
    Found existing installation: idna 3.4
    Uninstalling idna-3.4:
      Successfully uninstalled idna-3.4
  Attempting uninstall: docutils
    Found existing installation: docutils 0.14
    Uninstalling docutils-0.14:
      Successfully uninstalled docutils-0.14
  Attempting uninstall: requests
    Found existing installation: requests 2.28.1
    Uninstalling requests-2.28.1:
      Successfully uninstalled requests-2.28.1
  Attempting uninstall: h5py
    Found existing installation: h5py 3.7.0
    Uninstalling h5py-3.7.0:
      Successfully uninstalled h5py-3.7.0
  Attempting uninstall: sphinx
    Found existing installation: Sphinx 1.8.6
    Uninstalling Sphinx-1.8.6:
      Successfully uninstalled Sphinx-1.8.6
Successfully installed Cython-0.29.21 EXtra-redu-0.0.5 European-XFEL-Offline-Calibration-1.0 Jinja2-2.11.2 Send2Trash-1.8.0 argon2-cffi-21.3.0 argon2-cffi-bindings-21.2.0 astcheck-0.2.5 astsearch-0.2.0 async-generator-1.10 attrs-22.1.0 backcall-0.2.0 bleach-5.0.1 calibration-client-10.0.0 cfelpyutils-2.0.6 cffi-1.15.1 chardet-3.0.4 cycler-0.11.0 decorator-5.1.1 defusedxml-0.7.1 dill-0.3.0 docutils-0.17.1 dynaconf-3.1.4 entrypoints-0.4 env-cache-0.1 euxfel-bunch-pattern-0.6 extra-data-1.12.0 extra-geom-1.8.0 fabio-0.14.0 gitdb-4.0.9 gitpython-3.1.0 h5py-3.5.0 idna-2.8 iminuit-1.3.8 importlib-resources-5.10.0 ipykernel-5.1.4 ipyparallel-6.2.4 ipython-7.12.0 ipython-genutils-0.2.0 jedi-0.18.2 joblib-1.2.0 jsonschema-4.17.1 jupyter-client-7.3.4 jupyter-console-6.1.0 jupyter-core-4.10.0 kafka-python-2.0.2 karabo-bridge-0.6.2 karabo-data-0.7.0 kiwisolver-1.4.4 lxml-4.5.0 matplotlib-3.4.2 metadata-client-3.0.8 mistune-0.8.4 msgpack-1.0.4 msgpack-numpy-0.4.8 mypy-extensions-0.4.3 nbclient-0.5.1 nbconvert-5.6.1 nbformat-5.0.7 nbparameterise-0.5 nbsphinx-0.8.8 nest-asyncio-1.5.6 notebook-6.1.5 numpy-1.20.3 oauth2-xfel-client-6.1.0 oauthlib-3.2.2 pandas-1.5.2 pandocfilters-1.5.0 parso-0.8.3 pasha-0.1.1 pexpect-4.8.0 pickleshare-0.7.5 pillow-9.3.0 pkgutil-resolve-name-1.3.10 prettytable-0.7.2 princess-0.5 prometheus-client-0.15.0 prompt-toolkit-3.0.33 ptyprocess-0.7.0 pycparser-2.21 pygments-2.13.0 pypandoc-1.4 pyrsistent-0.19.2 pyyaml-5.3 pyzmq-23.2.0 requests-2.22.0 requests-oauthlib-1.3.1 scikit-learn-0.22.2.post1 scipy-1.7.0 setuptools-65.6.0 sharedmem-0.3.8 smmap-5.0.0 sphinx-1.8.5 tabulate-0.8.6 terminado-0.17.0 testpath-0.6.0 tornado-6.2 traitlets-4.3.3 urllib3-1.25.11 wcwidth-0.2.5 webencodings-0.5.1 xarray-2022.3.0 zipp-3.10.0

[rtd-command-info] start-time: 2022-11-23T11:16:56.894696Z, end-time: 2022-11-23T11:16:56.956062Z, duration: 0, exit-code: 0
cat docs/source/conf.py
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# European XFEL Offline Calibration documentation build configuration file, created by
# sphinx-quickstart on Sun Jun 10 17:32:30 2018.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

import glob

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#
# import os
# import sys
# sys.path.insert(0, os.path.abspath('.'))
import os
import shutil
import sys
import textwrap
from datetime import datetime
from subprocess import Popen, check_output
from textwrap import dedent, indent
from uuid import uuid4

import nbformat
import tabulate
from dateutil.parser import parse
from lxml import etree
from nbconvert import RSTExporter

# generate the list of available notebooks
from xfel_calibrate import notebooks

# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.autodoc',
    'sphinx.ext.intersphinx',
    'sphinx.ext.todo',
    'sphinx.ext.mathjax',
    'sphinx.ext.ifconfig',
    'sphinx.ext.viewcode',
]

sys.path.append(os.path.abspath("../pycalibration/"))
p = Popen(["./makeAllDocs.sh"])
p.communicate()

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
source_suffix = '.rst'

# The encoding of source files.
#
# source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = 'European XFEL Offline Calibration'
copyright = '2018, The European XFEL Detector Group'
author = 'The European XFEL Detector Group'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
version = '1.0'
# The full version, including alpha/beta/rc tags.
release = '1.0'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#
# today = ''
#
# Else, today_fmt is used as the format for a strftime call.
#
# today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This patterns also effect to html_static_path and html_extra_path
exclude_patterns = []

# The reST default role (used for this markup: `text`) to use for all
# documents.
#
# default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
#
# add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#
# add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#
# show_authors = False

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# A list of ignored prefixes for module index sorting.
# modindex_common_prefix = []

# If true, keep warnings as "system message" paragraphs in the built documents.
# keep_warnings = False

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = True


# -- Options for HTML output ----------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
#
html_theme = 'sphinx_rtd_theme'

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
#
# html_theme_options = {}

# Add any paths that contain custom themes here, relative to this directory.
# html_theme_path = []

# The name for this set of Sphinx documents.
# "<project> v<release> documentation" by default.
#
# html_title = 'European XFEL Offline Calibration v1.0'

# A shorter title for the navigation bar.  Default is the same as html_title.
#
# html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#
# html_logo = None

# The name of an image file (relative to this directory) to use as a favicon of
# the docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#
# html_favicon = None

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

# Add any extra paths that contain custom files (such as robots.txt or
# .htaccess) here, relative to this directory. These files are copied
# directly to the root of the documentation.
#
# html_extra_path = []

# If not None, a 'Last updated on:' timestamp is inserted at every page
# bottom, using the given strftime format.
# The empty string is equivalent to '%b %d, %Y'.
#
# html_last_updated_fmt = None

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#
# html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
#
# html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to
# template names.
#
# html_additional_pages = {}

# If false, no module index is generated.
#
# html_domain_indices = True

# If false, no index is generated.
#
# html_use_index = True

# If true, the index is split into individual pages for each letter.
#
# html_split_index = False

# If true, links to the reST sources are added to the pages.
#
# html_show_sourcelink = True

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
#
# html_show_sphinx = True

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
#
# html_show_copyright = True

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
#
# html_use_opensearch = ''

# This is the file name suffix for HTML files (e.g. ".xhtml").
# html_file_suffix = None

# Language to be used for generating the HTML full-text search index.
# Sphinx supports the following languages:
#   'da', 'de', 'en', 'es', 'fi', 'fr', 'h', 'it', 'ja'
#   'nl', 'no', 'pt', 'ro', 'r', 'sv', 'tr', 'zh'
#
# html_search_language = 'en'

# A dictionary with options for the search language support, empty by default.
# 'ja' uses this config value.
# 'zh' user can custom change `jieba` dictionary path.
#
# html_search_options = {'type': 'default'}

# The name of a javascript file (relative to the configuration directory) that
# implements a search results scorer. If empty, the default will be used.
#
# html_search_scorer = 'scorer.js'

# Output file base name for HTML help builder.
htmlhelp_basename = 'EuropeanXFELOfflineCalibrationdoc'

# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
     # The paper size ('letterpaper' or 'a4paper').
     #
     # 'papersize': 'letterpaper',

     # The font size ('10pt', '11pt' or '12pt').
     #
     # 'pointsize': '10pt',

     # Additional stuff for the LaTeX preamble.
     #
     # 'preamble': '',

     # Latex figure (float) alignment
     #
     # 'figure_align': 'htbp',
    'extraclassoptions': 'openany, oneside',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
    (master_doc, 'EuropeanXFELOfflineCalibration.tex', 'European XFEL Offline Calibration Documentation',
     'The European XFEL Detector Group', 'manual', True),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
#
# latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#
# latex_use_parts = False

# If true, show page references after internal links.
#
# latex_show_pagerefs = False

# If true, show URL addresses after external links.
#
# latex_show_urls = False

# Documents to append as an appendix to all manuals.
#
# latex_appendices = []

# It false, will not define \strong, \code, 	itleref, \crossref ... but only
# \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added
# packages.
#
# latex_keep_old_macro_names = True

# If false, no module index is generated.
#
# latex_domain_indices = True


# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'europeanxfelofflinecalibration', 'European XFEL Offline Calibration Documentation',
     [author], 1)
]

# If true, show URL addresses after external links.
#
# man_show_urls = False


# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (master_doc, 'EuropeanXFELOfflineCalibration', 'European XFEL Offline Calibration Documentation',
     author, 'EuropeanXFELOfflineCalibration', 'One line description of project.',
     'Miscellaneous'),
]

# Documents to append as an appendix to all manuals.
#
# texinfo_appendices = []

# If false, no module index is generated.
#
# texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.
#
# texinfo_show_urls = 'footnote'

# If true, do not generate a @detailmenu in the "Top" node's menu.
#
# texinfo_no_detailmenu = False


# Example configuration for intersphinx: refer to the Python standard library.
intersphinx_mapping = {'https://docs.python.org/': None}



# first install pandoc if necessary, this is mainly meant for the RTD builds
try:
    from nbconvert.utils.pandoc import check_pandoc_version
    check_pandoc_version()
    print("Pandoc was found!")
except:
    print("Installing Pandoc!")
    from subprocess import check_call
    pandoc_url = "https://github.com/jgm/pandoc/releases/download/2.2.1/pandoc-2.2.1-1-amd64.deb"
    pandoc_pack = "pandoc-2.2.1-1-amd64.deb"
    check_call(["wget", pandoc_url])
    check_call(["dpkg", "-i", pandoc_pack])

rst_exporter = RSTExporter()
with open("available_notebooks.rst", "w") as f:
    f.write(dedent("""
            .. _available_notebooks:

            Available Notebooks
            ===================

            The following notebooks are currently integrated into the European XFEL
            Offline Calibration tool chain.


            """))

    for detector in sorted(notebooks.notebooks.keys()):
        # Avoid having test notebooks in detector notebooks documentations. 
        if "TEST" in detector.upper():
            continue
        values = notebooks.notebooks[detector]
        f.write("{}\n".format(detector))
        f.write("{}\n".format("-"*len(detector)))
        f.write("\n")

        for caltype in sorted(values.keys()):
            data = values[caltype]
            nbpath = os.path.abspath("{}/../../../{}".format(__file__, data["notebook"]))
            with open(nbpath, "r") as nf:
                nb = nbformat.read(nf, as_version=4)
                def first_markdown_cell(nb):
                    for cell in nb.cells:
                        if cell.cell_type == 'markdown':
                            return cell
                mdcell = first_markdown_cell(nb)
                nb.cells = [mdcell]  # we only want this single cell
                body, _ = rst_exporter.from_notebook_node(nb)
                adjusted = []
                # adjust titles
                for line in body.split("\n"):
                    if line.startswith("=="):
                        line = line.replace("=", "+")
                    if line.startswith("--"):
                        line = line.replace("-", "~")
                    adjusted.append(line)
                f.write("\n".join(adjusted))
                f.write("\n")

            f.write("To invoke this notebook and display help use:\n\n")
            f.write(".. code-block:: bash\n\n")
            f.write("    xfel-calibrate {} {} --help\n\n".format(detector, caltype))
            f.write("The full parameter list of this notebook (with defaults is): \n\n")
            f.write(".. code-block:: bash\n\n")
            nb_help = ["xfel-calibrate", detector, caltype, "--help"]
            output = check_output(nb_help).decode('utf8')
            f.write(indent(output.replace("DETECTOR", detector).replace("TYPE", caltype), " "*4))
            f.write("\n\n")
# add test results
test_artefact_dir = os.path.realpath("../../tests/legacy/artefacts")


def xml_to_rst_report(xml, git_tag, reports=[]):
    e = etree.fromstring(xml.encode())
    rst = [""]
    rst += ["Test execution for {test_name} on {ex_date}"]
    test_name, ex_date = e.get("name").split("-")
    ex_date = parse(ex_date)
    rst[-1] = rst[-1].format(test_name=test_name, ex_date=ex_date)
    rst += ["="*len(rst[-1])]
    rst += [""]

    num_tests = e.get("tests")
    num_err = int(e.get("errors"))
    num_fail = int(e.get("failures"))
    num_skip = int(e.get("skipped"))

    # create a summary header
    if num_err + num_fail == 0:
        rst += [":header-passed:`✓`"]
    else:
        rst += [":header-failed:`❌`"]

    if num_skip > 0:
        rst[-1] += ":header-skipped:`⚠`"
    rst += [""]

    # give a summary
    rst += [":Git tag: {git_tag}".format(git_tag=git_tag)]
    rst += [":Tests: {num_tests}".format(num_tests=num_tests)]
    rst += [":Errors: {num_err}".format(num_err=num_err)]
    rst += [":Failures: {num_fail}".format(num_fail=num_fail)]
    rst += [":Skipped: {num_skip}".format(num_skip=num_skip)]
    rst += [":Duration: {duration}s".format(duration=e.get("time"))]
    for rname, rpath in reports:
        rst += [":Report: `{} <{}>`_".format(rname, rpath)]
    rst += [""]

    # now the details
    rst += ["Detailed Results"]
    rst += ["-"*len(rst[-1])]
    rst += [""]

    detailed_failures = []
    rows = []
    for child in e:
        if child.tag != "testcase":
            continue
        name = child.get("name")
        extime = child.get("time")
        status = ":passed:`passed`"
        msg = ""
        etype = ""
        if len(child):  # children are pressent so test failed or skipped
            detail = child[0]
            etype = detail.get("type")
            msg = detail.get("message")
            if etype == "skip":
                status = ":skipped:`skipped`"
            else:
                status= ":failed:`failed`"
                detailed_failures.append((name, detail.text))
        msg = "\n".join(textwrap.wrap(msg, 20))
        row = [status, name, etype, msg, extime ]
        rows.append(row)

    header = ["Result", "Test", "Error", "Message", "Duration (s)"]
    tblrst =  tabulate.tabulate(rows, headers=header, tablefmt="rst")
    rst += tblrst.split("\n")
    rst += [""]

    for test, report in detailed_failures:
        rst += ["Failure report for: {}".format(test)]
        rst += ["~"*len(rst[-1])]
        rst += [""]
        rst += [".. code-block:: python"]
        rst += textwrap.indent(report, " "*4).split("\n")
        rst += [""]

    do_console = False
    for child in e:
        if child.tag == "system-out" and len(child.text.strip()):
            do_console = True
            break

    if do_console:

        # console output
        rst += ["Console Output"]
        rst += ["-"*len(rst[-1])]
        rst += [""]

        for child in e:
            if child.tag != "system-out":
                continue

            rst += [".. code-block:: console"]
            rst += textwrap.indent(child.text, " "*4).split("\n")


    return "\n".join(rst)

def sorted_dir(folder):
    def getmtime(name):
        path = os.path.join(folder, name)
        return os.path.getmtime(path)

    sort = sorted(os.listdir(folder), key=getmtime, reverse=True)
    return [(s, datetime.fromtimestamp(getmtime(s))) for s in sort]

header = """
Test Results
++++++++++++

Results are organized by git commit, and sorted descending by date.

Contents:

.. toctree::
   :maxdepth: 2


"""
if not os.path.exists("./test_rsts"):
    os.makedirs("./test_rsts")
with open("test_results.rst", "w") as f:
    f.write(header)
    for commit, modtime in sorted_dir(test_artefact_dir):
        with open("./test_rsts/{}.rst".format(commit), "w") as fr:
            rst = [".. include:: roles.rst"]
            rst += [""]
            rst += ["{} - {}".format(commit[:8], modtime)]
            rst += ["+"*len(rst[-1])]
            rst += [""]
            fr.write("\n".join(rst))

            # copy reports
            pdfs = glob.glob("{}/{}/*/*.pdf".format(test_artefact_dir, commit))
            if not os.path.exists("./_static/reports/{}".format(commit)):
                os.makedirs("./_static/reports/{}".format(commit))
            reports = {}
            for pdf in pdfs:
                ppath = "{}/{}.pdf".format(commit, uuid4())
                shutil.copyfile(pdf, "./_static/reports/{}".format(ppath))
                rloc = pdf.split("/")[-2]
                rlist = reports.get(rloc, [])
                rname = os.path.basename(pdf).split(".")[0]
                rlist.append((rname, "../_static/reports/{}".format(ppath)))
                reports[rloc] = rlist

            xmls = glob.glob("{}/{}/*/TEST*.xml".format(test_artefact_dir, commit))
            for xml in xmls:
                rloc = xml.split("/")[-2]
                with open(xml, "r") as xf:
                    xs = xf.read()
                    rst = xml_to_rst_report(xs, commit, reports=reports.get(rloc, []))
                    fr.write(rst)
            f.write("   test_rsts/{}\n".format(commit))


def setup(app):
    app.add_stylesheet('css/test_decorators.css')




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#


import importlib
import sys
import os.path
from six import string_types

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
        # Sphinx >= 1.3 supports list/tuple to define multiple suffixes
        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
        # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes
        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    theme = importlib.import_module('sphinx_rtd_theme')
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'http://rtd.xfel.eu/websupport'
    websupport2_static_url = '/static/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "stable",
    'version_slug': "stable",
    'MEDIA_URL': "media/",
    'STATIC_URL': "/static/",
    'PRODUCTION_DOMAIN': "rtd.xfel.eu",
    'versions': [
    ("latest", "/en/latest/"),
    ("stable", "/en/stable/"),
    ("doc-commonspace", "/en/doc-commonspace/"),
    ],
    'downloads': [ 
    ],
    'subprojects': [ 
    ],
    'slug': 'european-xfel-offline-calibration',
    'name': u'European XFEL Offline Calibration',
    'rtd_language': u'en',
    'programming_language': u'py',
    'canonical_url': 'http://rtd.xfel.eu/docs/european-xfel-offline-calibration/en/latest/',
    'analytics_code': 'None',
    'single_version': False,
    'conf_py_path': '/docs/source/',
    'api_host': 'http://rtd.xfel.eu',
    'github_user': 'None',
    'proxied_api_host': '/_',
    'github_repo': 'None',
    'github_version': 'f148f2aecc4af299e15106fa557e3156c700b6be',
    'display_github': False,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'f148f2aecc4af299e15106fa557e3156c700b6be',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'f148f2aecc4af299e15106fa557e3156c700b6be',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'docsearch_disabled': False,
    'user_analytics_code': '',
    'global_analytics_code': 'None',
    'commit': 'f148f2ae',
}




if 'html_context' in globals():
    
    html_context.update(context)
    
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

# Add External version warning banner to the external version documentation
if 'tag' == 'external':
    extensions.insert(1, "readthedocs_ext.external_version_warning")

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
    language_user in ('zh_CN', 'zh_TW'),
    project_language in ('zh_CN', 'zh_TW'),
])

japanese = any([
    language_user == 'ja',
    project_language == 'ja',
])

if chinese:
    latex_engine = latex_engine_user or 'xelatex'

    latex_elements_rtd = {
        'preamble': '\\usepackage[UTF8]{ctex}\n',
    }
    latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
    latex_engine = latex_engine_user or 'platex'

# Make sure our build directory is always excluded
exclude_patterns = globals().get('exclude_patterns', [])
exclude_patterns.extend(['_build'])

[rtd-command-info] start-time: 2022-11-23T11:16:57.046138Z, end-time: 2022-11-23T11:17:56.659824Z, duration: 59, exit-code: 0
python /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/stable/bin/sphinx-build -T -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html
Running Sphinx v1.8.5
[NbConvertApp] Converting notebook ../../../notebooks/Tutorial/calversion.ipynb to rst
[NbConvertApp] Writing 4434 bytes to ./calversion.rst
Matplotlib is building the font cache; this may take a moment.
Pandoc was found!
loading translations [en]... done
making output directory...
loading intersphinx inventory from https://docs.python.org/objects.inv...
intersphinx inventory has moved: https://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv
building [mo]: targets for 0 po files that are out of date
building [readthedocs]: targets for 17 source files that are out of date
updating environment: 17 added, 0 changed, 0 removed
reading sources... [  5%] _notebooks/calversion
reading sources... [ 11%] _notebooks/index
reading sources... [ 17%] advanced
reading sources... [ 23%] available_notebooks
reading sources... [ 29%] cal_tools_algorithms
reading sources... [ 35%] changelog
reading sources... [ 41%] configuration
reading sources... [ 47%] index
reading sources... [ 52%] installation
reading sources... [ 58%] test_results
reading sources... [ 64%] test_rsts/9088fa11013afe7bb5d4231fd4170c96e34db520
reading sources... [ 70%] test_rsts/ca3b513c64c05a29ae0f530c91b04349417c4fa0
reading sources... [ 76%] test_rsts/roles
reading sources... [ 82%] testing
reading sources... [ 88%] tutorial
reading sources... [ 94%] workflow
reading sources... [100%] xfel_calibrate_conf

/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/_notebooks/calversion.rst:2: WARNING: Explicit markup ends without a blank line; unexpected unindent.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/advanced.rst:46: WARNING: Literal block expected; none found.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/index.rst:61: WARNING: toctree contains reference to nonexisting document 'architecture'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [  5%] _notebooks/calversion
writing output... [ 11%] _notebooks/index
writing output... [ 17%] advanced
writing output... [ 23%] available_notebooks
writing output... [ 29%] cal_tools_algorithms
writing output... [ 35%] changelog
writing output... [ 41%] configuration
writing output... [ 47%] index
writing output... [ 52%] installation
writing output... [ 58%] test_results
writing output... [ 64%] test_rsts/9088fa11013afe7bb5d4231fd4170c96e34db520
writing output... [ 70%] test_rsts/ca3b513c64c05a29ae0f530c91b04349417c4fa0
writing output... [ 76%] test_rsts/roles
writing output... [ 82%] testing
writing output... [ 88%] tutorial
writing output... [ 94%] workflow
writing output... [100%] xfel_calibrate_conf

/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:43: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:760: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:964: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:1114: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:1312: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:1471: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:1637: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:1819: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:1983: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:2131: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:2268: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:2631: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:2726: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:2895: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:3062: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:3232: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:3398: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:3574: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:3902: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:4077: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:4211: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:4341: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:4469: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:5134: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/stable/docs/source/available_notebooks.rst:5337: WARNING: Could not lex literal_block as "bash". Highlighting skipped.
generating indices... genindex py-modindex
highlighting module code... [ 50%] cal_tools.agipdlib
highlighting module code... [100%] xfel_calibrate.calibrate

writing additional pages... search
copying static files... done
copying readthedocs static files... done
copying searchtools... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 28 warnings.

The HTML pages are in _build/html.