Read the Docs build information Build id: 25241 Project: scs-toolbox Version: docs-build-test Commit: 60a84b7c99c01c70bbd57ecd9fd1a6542750cfb9 Date: 2023-01-16T10:36:13.014911Z State: finished Success: True [rtd-command-info] start-time: 2023-01-16T10:36:14.236147Z, end-time: 2023-01-16T10:36:15.115017Z, duration: 0, exit-code: 0 git clone --no-single-branch --depth 50 https://git.xfel.eu/SCS/ToolBox.git . Cloning into '.'... [rtd-command-info] start-time: 2023-01-16T10:36:15.473105Z, end-time: 2023-01-16T10:36:15.574681Z, duration: 0, exit-code: 0 git checkout --force origin/docs-build-test Note: checking out 'origin/docs-build-test'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 60a84b7 Fix changelog typo [rtd-command-info] start-time: 2023-01-16T10:36:15.659311Z, end-time: 2023-01-16T10:36:15.725754Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2023-01-16T10:36:16.973022Z, end-time: 2023-01-16T10:36:21.656306Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/bin/python3.7 Also creating executable in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2023-01-16T10:36:21.744594Z, end-time: 2023-01-16T10:36:22.684767Z, duration: 0, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/bin/python -m pip install --upgrade --no-cache-dir pip Requirement already satisfied: pip in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (22.3.1) [rtd-command-info] start-time: 2023-01-16T10:36:22.766454Z, end-time: 2023-01-16T10:36:32.340190Z, duration: 9, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/bin/python -m pip install --upgrade --no-cache-dir jinja2==2.11.3 markupsafe==2.0.1 Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting jinja2==2.11.3 Downloading Jinja2-2.11.3-py2.py3-none-any.whl (125 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 125.7/125.7 kB 3.3 MB/s eta 0:00:00 Collecting markupsafe==2.0.1 Downloading MarkupSafe-2.0.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (31 kB) Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 849.5/849.5 kB 18.7 MB/s eta 0:00:00 Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 576.0/576.0 kB 190.8 MB/s eta 0:00:00 Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 543.2/543.2 kB 187.7 MB/s eta 0:00:00 Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 861.9/861.9 kB 175.6 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 122.1 MB/s eta 0:00:00 Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.13-py3-none-any.whl (13 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 47.4/47.4 kB 167.7 MB/s eta 0:00:00 Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.6-py2.py3-none-any.whl (3.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 180.6 MB/s eta 0:00:00 Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.4/6.4 MB 148.7 MB/s eta 0:00:00 Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.4-py2.py3-none-any.whl (28 kB) Collecting future Downloading future-0.18.3.tar.gz (840 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 840.9/840.9 kB 209.1 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 93.0/93.0 kB 188.1 MB/s eta 0:00:00 Collecting imagesize Downloading imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.11.0-py3-none-any.whl (9.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.5/9.5 MB 66.8 MB/s eta 0:00:00 Collecting packaging Downloading packaging-23.0-py3-none-any.whl (42 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 42.7/42.7 kB 160.0 MB/s eta 0:00:00 Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting requests>=2.0.0 Downloading requests-2.28.2-py3-none-any.whl (62 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.8/62.8 kB 131.4 MB/s eta 0:00:00 Collecting six>=1.5 Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting pytz>=2015.7 Downloading pytz-2022.7.1-py2.py3-none-any.whl (499 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 499.4/499.4 kB 198.3 MB/s eta 0:00:00 Collecting certifi>=2017.4.17 Downloading certifi-2022.12.7-py3-none-any.whl (155 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 155.3/155.3 kB 197.4 MB/s eta 0:00:00 Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.14-py2.py3-none-any.whl (140 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 140.6/140.6 kB 211.3 MB/s eta 0:00:00 Collecting idna<4,>=2.5 Downloading idna-3.4-py3-none-any.whl (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.5/61.5 kB 170.9 MB/s eta 0:00:00 Collecting charset-normalizer<4,>=2 Downloading charset_normalizer-3.0.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (170 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 170.5/170.5 kB 195.3 MB/s eta 0:00:00 Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 94.0/94.0 kB 192.3 MB/s eta 0:00:00 Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23753 sha256=415777c775692ee5103cad72ee3a2018211237b7bbdc13939404e4c280cf24c8 Stored in directory: /tmp/pip-ephem-wheel-cache-etg_fi8v/wheels/d1/33/8e/f9d24f00cc130866aacfe7c3bc15571217e2b22cc4c4e1b443 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.3-py3-none-any.whl size=492025 sha256=df588000e5d4471c56296508a8277b2525e3cf85ce48faaaee5661f3281757d2 Stored in directory: /tmp/pip-ephem-wheel-cache-etg_fi8v/wheels/52/2a/fc/520209cfa6448febd490720a0b09036cb367628f7c4e9cc172 Successfully built mock future Installing collected packages: snowballstemmer, pytz, Pygments, mock, docutils, charset-normalizer, urllib3, sphinxcontrib-serializinghtml, six, setuptools, pillow, packaging, markupsafe, imagesize, idna, future, certifi, babel, alabaster, sphinxcontrib-websupport, requests, jinja2, commonmark, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark Attempting uninstall: setuptools Found existing installation: setuptools 66.0.0 Uninstalling setuptools-66.0.0: Successfully uninstalled setuptools-66.0.0 Successfully installed Pygments-2.3.1 alabaster-0.7.13 babel-2.11.0 certifi-2022.12.7 charset-normalizer-3.0.1 commonmark-0.8.1 docutils-0.14 future-0.18.3 idna-3.4 imagesize-1.4.1 jinja2-2.11.3 markupsafe-2.0.1 mock-1.0.1 packaging-23.0 pillow-5.4.1 pytz-2022.7.1 readthedocs-sphinx-ext-1.0.4 recommonmark-0.5.0 requests-2.28.2 setuptools-41.0.1 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.14 [rtd-command-info] start-time: 2023-01-16T10:36:32.425588Z, end-time: 2023-01-16T10:36:42.643674Z, duration: 10, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/bin/python -m pip install --exists-action=w --no-cache-dir -r doc/requirements.txt Requirement already satisfied: sphinx in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from -r doc/requirements.txt (line 1)) (1.8.6) Requirement already satisfied: sphinx_rtd_theme in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from -r doc/requirements.txt (line 2)) (0.4.3) Collecting autoapi Downloading autoapi-2.0.1.tar.gz (11 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting sphinx-autoapi Downloading sphinx_autoapi-2.0.0-py2.py3-none-any.whl (55 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 56.0/56.0 kB 2.5 MB/s eta 0:00:00 Collecting nbsphinx Downloading nbsphinx-0.8.11-py3-none-any.whl (26 kB) Requirement already satisfied: six>=1.5 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (1.16.0) Requirement already satisfied: alabaster<0.8,>=0.7 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (0.7.13) Requirement already satisfied: requests>=2.0.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (2.28.2) Requirement already satisfied: setuptools in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (41.0.1) Requirement already satisfied: Jinja2>=2.3 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (2.11.3) Requirement already satisfied: Pygments>=2.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (2.3.1) Requirement already satisfied: packaging in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (23.0) Requirement already satisfied: imagesize in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (1.4.1) Requirement already satisfied: snowballstemmer>=1.1 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (2.2.0) Requirement already satisfied: sphinxcontrib-websupport in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (1.2.4) Requirement already satisfied: docutils<0.18,>=0.11 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (0.14) Requirement already satisfied: babel!=2.0,>=1.3 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (2.11.0) Collecting PyYAML Downloading PyYAML-6.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (596 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 596.3/596.3 kB 13.1 MB/s eta 0:00:00 Collecting astroid>=2.7 Downloading astroid-2.13.2-py3-none-any.whl (272 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 272.4/272.4 kB 198.3 MB/s eta 0:00:00 Collecting sphinx Downloading sphinx-5.3.0-py3-none-any.whl (3.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.2/3.2 MB 66.6 MB/s eta 0:00:00 Collecting unidecode Downloading Unidecode-1.3.6-py3-none-any.whl (235 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 235.9/235.9 kB 164.8 MB/s eta 0:00:00 Collecting sphinxcontrib-applehelp Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 121.2/121.2 kB 205.6 MB/s eta 0:00:00 Collecting importlib-metadata>=4.8 Downloading importlib_metadata-6.0.0-py3-none-any.whl (21 kB) Collecting sphinxcontrib-htmlhelp>=2.0.0 Downloading sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl (100 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100.5/100.5 kB 201.7 MB/s eta 0:00:00 Collecting sphinxcontrib-jsmath Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 84.7/84.7 kB 169.1 MB/s eta 0:00:00 Collecting Pygments>=2.0 Downloading Pygments-2.14.0-py3-none-any.whl (1.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 212.3 MB/s eta 0:00:00 Collecting sphinxcontrib-qthelp Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 90.6/90.6 kB 202.1 MB/s eta 0:00:00 Collecting Jinja2>=2.3 Downloading Jinja2-3.1.2-py3-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.1/133.1 kB 209.8 MB/s eta 0:00:00 Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.5 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (1.1.5) Collecting nbformat Downloading nbformat-5.7.3-py3-none-any.whl (78 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 78.1/78.1 kB 207.5 MB/s eta 0:00:00 Collecting traitlets>=5 Downloading traitlets-5.8.1-py3-none-any.whl (116 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 116.8/116.8 kB 202.2 MB/s eta 0:00:00 Collecting nbconvert!=5.4 Downloading nbconvert-7.2.7-py3-none-any.whl (273 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 273.2/273.2 kB 214.0 MB/s eta 0:00:00 Collecting lazy-object-proxy>=1.4.0 Downloading lazy_object_proxy-1.9.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (58 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 58.5/58.5 kB 143.7 MB/s eta 0:00:00 Collecting wrapt<2,>=1.11 Downloading wrapt-1.14.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (75 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 75.2/75.2 kB 193.7 MB/s eta 0:00:00 Collecting typed-ast<2.0,>=1.4.0 Downloading typed_ast-1.5.4-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (843 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 843.7/843.7 kB 216.1 MB/s eta 0:00:00 Collecting typing-extensions>=4.0.0 Downloading typing_extensions-4.4.0-py3-none-any.whl (26 kB) Requirement already satisfied: pytz>=2015.7 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from babel!=2.0,>=1.3->sphinx->-r doc/requirements.txt (line 1)) (2022.7.1) Collecting zipp>=0.5 Downloading zipp-3.11.0-py3-none-any.whl (6.6 kB) Requirement already satisfied: MarkupSafe>=2.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx->-r doc/requirements.txt (line 1)) (2.0.1) Collecting bleach Downloading bleach-5.0.1-py3-none-any.whl (160 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 160.9/160.9 kB 166.9 MB/s eta 0:00:00 Collecting tinycss2 Downloading tinycss2-1.2.1-py3-none-any.whl (21 kB) Collecting jupyterlab-pygments Downloading jupyterlab_pygments-0.2.2-py2.py3-none-any.whl (21 kB) Collecting nbclient>=0.5.0 Downloading nbclient-0.7.2-py3-none-any.whl (71 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 72.0/72.0 kB 182.7 MB/s eta 0:00:00 Collecting pandocfilters>=1.4.1 Downloading pandocfilters-1.5.0-py2.py3-none-any.whl (8.7 kB) Collecting beautifulsoup4 Downloading beautifulsoup4-4.11.1-py3-none-any.whl (128 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 128.2/128.2 kB 203.2 MB/s eta 0:00:00 Collecting mistune<3,>=2.0.3 Downloading mistune-2.0.4-py2.py3-none-any.whl (24 kB) Collecting defusedxml Downloading defusedxml-0.7.1-py2.py3-none-any.whl (25 kB) Collecting jupyter-core>=4.7 Downloading jupyter_core-4.12.0-py3-none-any.whl (89 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 89.9/89.9 kB 186.9 MB/s eta 0:00:00 Collecting fastjsonschema Downloading fastjsonschema-2.16.2-py3-none-any.whl (22 kB) Collecting jsonschema>=2.6 Downloading jsonschema-4.17.3-py3-none-any.whl (90 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 90.4/90.4 kB 189.5 MB/s eta 0:00:00 Requirement already satisfied: idna<4,>=2.5 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->-r doc/requirements.txt (line 1)) (3.4) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->-r doc/requirements.txt (line 1)) (1.26.14) Requirement already satisfied: certifi>=2017.4.17 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->-r doc/requirements.txt (line 1)) (2022.12.7) Requirement already satisfied: charset-normalizer<4,>=2 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->-r doc/requirements.txt (line 1)) (3.0.1) Collecting pyrsistent!=0.17.0,!=0.17.1,!=0.17.2,>=0.14.0 Downloading pyrsistent-0.19.3-py3-none-any.whl (57 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 57.5/57.5 kB 160.5 MB/s eta 0:00:00 Collecting pkgutil-resolve-name>=1.3.10 Downloading pkgutil_resolve_name-1.3.10-py3-none-any.whl (4.7 kB) Collecting attrs>=17.4.0 Downloading attrs-22.2.0-py3-none-any.whl (60 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 60.0/60.0 kB 165.6 MB/s eta 0:00:00 Collecting importlib-resources>=1.4.0 Downloading importlib_resources-5.10.2-py3-none-any.whl (34 kB) Collecting jupyter-client>=6.1.12 Downloading jupyter_client-7.4.9-py3-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.5/133.5 kB 154.2 MB/s eta 0:00:00 Collecting soupsieve>1.2 Downloading soupsieve-2.3.2.post1-py3-none-any.whl (37 kB) Collecting webencodings Downloading webencodings-0.5.1-py2.py3-none-any.whl (11 kB) Collecting entrypoints Downloading entrypoints-0.4-py3-none-any.whl (5.3 kB) Collecting python-dateutil>=2.8.2 Downloading python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 247.7/247.7 kB 223.1 MB/s eta 0:00:00 Collecting tornado>=6.2 Downloading tornado-6.2-cp37-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (423 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 424.0/424.0 kB 213.8 MB/s eta 0:00:00 Collecting nest-asyncio>=1.5.4 Downloading nest_asyncio-1.5.6-py3-none-any.whl (5.2 kB) Collecting pyzmq>=23.0 Downloading pyzmq-25.0.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (1.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.0/1.0 MB 212.8 MB/s eta 0:00:00 Building wheels for collected packages: autoapi Building wheel for autoapi (setup.py): started Building wheel for autoapi (setup.py): finished with status 'done' Created wheel for autoapi: filename=autoapi-2.0.1-py3-none-any.whl size=13605 sha256=93a876f04be3f9fd2c7f912ce3a6ff1404900d04acd15f133a61a8f9972b7813 Stored in directory: /tmp/pip-ephem-wheel-cache-393qrkqg/wheels/65/0b/e9/50413699f3d38398cda87d331bf6957b5a9dbad231753470c0 Successfully built autoapi Installing collected packages: webencodings, mistune, fastjsonschema, zipp, wrapt, unidecode, typing-extensions, typed-ast, traitlets, tornado, tinycss2, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, soupsieve, pyzmq, PyYAML, python-dateutil, pyrsistent, Pygments, pkgutil-resolve-name, pandocfilters, nest-asyncio, lazy-object-proxy, jupyterlab-pygments, Jinja2, entrypoints, defusedxml, bleach, attrs, jupyter-core, importlib-resources, importlib-metadata, beautifulsoup4, astroid, sphinx, jupyter-client, jsonschema, sphinx-autoapi, nbformat, autoapi, nbclient, nbconvert, nbsphinx Attempting uninstall: Pygments Found existing installation: Pygments 2.3.1 Uninstalling Pygments-2.3.1: Successfully uninstalled Pygments-2.3.1 Attempting uninstall: Jinja2 Found existing installation: Jinja2 2.11.3 Uninstalling Jinja2-2.11.3: Successfully uninstalled Jinja2-2.11.3 Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.6 Uninstalling Sphinx-1.8.6: Successfully uninstalled Sphinx-1.8.6 Successfully installed Jinja2-3.1.2 PyYAML-6.0 Pygments-2.14.0 astroid-2.13.2 attrs-22.2.0 autoapi-2.0.1 beautifulsoup4-4.11.1 bleach-5.0.1 defusedxml-0.7.1 entrypoints-0.4 fastjsonschema-2.16.2 importlib-metadata-6.0.0 importlib-resources-5.10.2 jsonschema-4.17.3 jupyter-client-7.4.9 jupyter-core-4.12.0 jupyterlab-pygments-0.2.2 lazy-object-proxy-1.9.0 mistune-2.0.4 nbclient-0.7.2 nbconvert-7.2.7 nbformat-5.7.3 nbsphinx-0.8.11 nest-asyncio-1.5.6 pandocfilters-1.5.0 pkgutil-resolve-name-1.3.10 pyrsistent-0.19.3 python-dateutil-2.8.2 pyzmq-25.0.0 soupsieve-2.3.2.post1 sphinx-5.3.0 sphinx-autoapi-2.0.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 tinycss2-1.2.1 tornado-6.2 traitlets-5.8.1 typed-ast-1.5.4 typing-extensions-4.4.0 unidecode-1.3.6 webencodings-0.5.1 wrapt-1.14.1 zipp-3.11.0 [rtd-command-info] start-time: 2023-01-16T10:36:43.330284Z, end-time: 2023-01-16T10:36:43.393925Z, duration: 0, exit-code: 0 cat doc/conf.py # -*- coding: utf-8 -*- # # Configuration file for the Sphinx documentation builder. # # This file does only contain a selection of the most common options. For a # full list see the documentation: # http://www.sphinx-doc.org/en/master/config # -- Path setup -------------------------------------------------------------- # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # import os import sys sys.path.insert(0, os.path.abspath('..')) import sphinx_rtd_theme # -- Project information ----------------------------------------------------- project = 'SCS Toolbox' copyright = '2021, SCS' author = 'SCS' # The short X.Y version version = '' # The full version, including alpha/beta/rc tags release = '' # -- General configuration --------------------------------------------------- # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.viewcode', 'sphinx.ext.coverage', 'sphinx.ext.napoleon', 'sphinx.ext.extlinks', # Comment out autoapi to be able to run nbsphinx 'autoapi.extension', 'sphinx_rtd_theme', 'nbsphinx' ] autoapi_dirs = ['../src/toolbox_scs'] autoapi_ignore = ['*/deprecated/*'] extlinks = {'issue': ('https://git.xfel.eu/SCS/ToolBox/-/issues/%s', 'issue:'), 'mr': ('https://git.xfel.eu/SCS/ToolBox/-/merge_requests/%s', 'MR:'), 'commit': ('https://git.xfel.eu/SCS/ToolBox/-/commit/%s', 'commit:') } # Don't add .txt suffix to source files: html_sourcelink_suffix = '' # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The master toctree document. master_doc = 'index' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This pattern also affects html_static_path and html_extra_path. exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The name of the Pygments (syntax highlighting) style to use. pygments_style = None # -- Options for HTML output ------------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # #html_theme = 'alabaster' html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. # # html_theme_options = {} # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] # Custom sidebar templates, must be a dictionary that maps document names # to template names. # # The default sidebars (for documents that don't match any pattern) are # defined by theme itself. Builtin themes are using these templates by # default: ``['localtoc.html', 'relations.html', 'sourcelink.html', # 'searchbox.html']``. # # html_sidebars = {} # -- Options for HTMLHelp output --------------------------------------------- # Output file base name for HTML help builder. htmlhelp_basename = 'SCSToolboxdoc' # -- Options for LaTeX output ------------------------------------------------ latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'SCSToolbox.tex', 'SCS Toolbox Documentation', 'SCS', 'manual'), ] # -- Options for manual page output ------------------------------------------ # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'scstoolbox', 'SCS Toolbox Documentation', [author], 1) ] # -- Options for Texinfo output ---------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'SCSToolbox', 'SCS Toolbox Documentation', author, 'SCSToolbox', 'One line description of project.', 'Miscellaneous'), ] # -- Options for Epub output ------------------------------------------------- # Bibliographic Dublin Core info. epub_title = project # The unique identifier of the text. This can be a ISBN number # or the project homepage. # # epub_identifier = '' # A unique identification for the text. # # epub_uid = '' # A list of files that should not be packed into the epub file. epub_exclude_files = ['search.html'] # -- Extension configuration ------------------------------------------------- ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'http://rtd.xfel.eu/websupport' websupport2_static_url = '/static/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "docs-build-test", 'version_slug': "docs-build-test", 'MEDIA_URL': "media/", 'STATIC_URL': "/static/", 'PRODUCTION_DOMAIN': "rtd.xfel.eu", 'versions': [ ("latest", "/en/latest/"), ("docs-build-test", "/en/docs-build-test/"), ], 'downloads': [ ], 'subprojects': [ ], 'slug': 'scs-toolbox', 'name': u'SCS ToolBox', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'http://rtd.xfel.eu/docs/scs-toolbox/en/latest/', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/doc/', 'api_host': 'http://rtd.xfel.eu', 'github_user': 'None', 'proxied_api_host': '/_', 'github_repo': 'None', 'github_version': 'docs-build-test', 'display_github': False, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'docs-build-test', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'docs-build-test', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': '', 'global_analytics_code': 'None', 'commit': '60a84b7c', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2023-01-16T10:36:43.476972Z, end-time: 2023-01-16T10:37:04.783757Z, duration: 21, exit-code: 0 python /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/bin/sphinx-build -T -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v5.3.0 WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English). making output directory... done WARNING: html_static_path entry '_static' does not exist WARNING: extlinks: Sphinx-6.0 will require a caption string to contain exactly one '%s' and all other '%' need to be escaped as '%%'. WARNING: extlinks: Sphinx-6.0 will require a caption string to contain exactly one '%s' and all other '%' need to be escaped as '%%'. WARNING: extlinks: Sphinx-6.0 will require a caption string to contain exactly one '%s' and all other '%' need to be escaped as '%%'. [AutoAPI] Ignoring /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/deprecated/dssc_single_module.py [AutoAPI] Ignoring /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/deprecated/dssc_bkp.py [AutoAPI] Reading files... [ 2%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/__init__.py [AutoAPI] Reading files... [ 5%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/mnemonics_machinery.py [AutoAPI] Reading files... [ 7%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/constants.py [AutoAPI] Reading files... [ 10%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/load.py [AutoAPI] Reading files... [ 12%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/misc/__init__.py [AutoAPI] Reading files... [ 15%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/misc/laser_utils.py [AutoAPI] Reading files... [ 17%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/misc/undulator.py [AutoAPI] Reading files... [ 20%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/misc/bunch_pattern_external.py [AutoAPI] Reading files... [ 22%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/misc/bunch_pattern.py [AutoAPI] Reading files... [ 25%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/util/__init__.py [AutoAPI] Reading files... [ 27%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/util/pkg.py [AutoAPI] Reading files... [ 30%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/util/exceptions.py [AutoAPI] Reading files... [ 32%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/base/__init__.py [AutoAPI] Reading files... [ 35%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/base/knife_edge.py [AutoAPI] Reading files... [ 37%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/base/tests/__init__.py [AutoAPI] Reading files... [ 40%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/base/tests/test_knife_edge.py [AutoAPI] Reading files... [ 42%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/dssc_processing.py [AutoAPI] Reading files... [ 45%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/__init__.py [AutoAPI] Reading files... [ 47%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/hrixs.py [AutoAPI] Reading files... [ 50%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/azimuthal_integrator.py [AutoAPI] Reading files... [ 52%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/dssc_data.py [AutoAPI] Reading files... [ 55%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/pes.py [AutoAPI] Reading files... [ 57%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/dssc_plot.py [AutoAPI] Reading files... [ 60%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/fccd.py [AutoAPI] Reading files... [ 62%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/bam_detectors.py [AutoAPI] Reading files... [ 65%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/digitizers.py [AutoAPI] Reading files... [ 67%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/dssc_misc.py [AutoAPI] Reading files... [ 70%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/dssc.py [AutoAPI] Reading files... [ 72%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/xgm.py [AutoAPI] Reading files... [ 75%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/__init__.py [AutoAPI] Reading files... [ 77%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/test_hrixs.py [AutoAPI] Reading files... [ 80%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/test_dssc_cls.py [AutoAPI] Reading files... [ 82%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/test_top_level.py [AutoAPI] Reading files... [ 85%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/test_misc.py [AutoAPI] Reading files... [ 87%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/test_utils.py [AutoAPI] Reading files... [ 90%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/routines/__init__.py [AutoAPI] Reading files... [ 92%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/routines/XAS.py [AutoAPI] Reading files... [ 95%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/routines/Reflectivity.py [AutoAPI] Reading files... [ 97%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/routines/knife_edge.py [AutoAPI] Reading files... [100%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/routines/boz.py WARNING: Cannot resolve import of unknown module toolbox_scs.util.data_access in toolbox_scs.test.test_utils [AutoAPI] Mapping Data... [ 2%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/__init__.py [AutoAPI] Mapping Data... [ 5%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/mnemonics_machinery.py [AutoAPI] Mapping Data... [ 7%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/constants.py [AutoAPI] Mapping Data... [ 10%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/load.py [AutoAPI] Mapping Data... [ 12%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/misc/__init__.py [AutoAPI] Mapping Data... [ 15%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/misc/laser_utils.py [AutoAPI] Mapping Data... [ 17%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/misc/undulator.py [AutoAPI] Mapping Data... [ 20%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/misc/bunch_pattern_external.py [AutoAPI] Mapping Data... [ 22%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/misc/bunch_pattern.py [AutoAPI] Mapping Data... [ 25%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/util/__init__.py [AutoAPI] Mapping Data... [ 27%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/util/pkg.py [AutoAPI] Mapping Data... [ 30%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/util/exceptions.py [AutoAPI] Mapping Data... [ 32%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/base/__init__.py [AutoAPI] Mapping Data... [ 35%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/base/knife_edge.py [AutoAPI] Mapping Data... [ 37%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/base/tests/__init__.py [AutoAPI] Mapping Data... [ 40%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/base/tests/test_knife_edge.py [AutoAPI] Mapping Data... [ 42%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/dssc_processing.py [AutoAPI] Mapping Data... [ 45%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/__init__.py [AutoAPI] Mapping Data... [ 47%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/hrixs.py [AutoAPI] Mapping Data... [ 50%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/azimuthal_integrator.py [AutoAPI] Mapping Data... [ 52%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/dssc_data.py [AutoAPI] Mapping Data... [ 55%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/pes.py [AutoAPI] Mapping Data... [ 57%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/dssc_plot.py [AutoAPI] Mapping Data... [ 60%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/fccd.py [AutoAPI] Mapping Data... [ 62%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/bam_detectors.py [AutoAPI] Mapping Data... [ 65%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/digitizers.py [AutoAPI] Mapping Data... [ 67%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/dssc_misc.py [AutoAPI] Mapping Data... [ 70%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/dssc.py [AutoAPI] Mapping Data... [ 72%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/xgm.py [AutoAPI] Mapping Data... [ 75%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/__init__.py [AutoAPI] Mapping Data... [ 77%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/test_hrixs.py [AutoAPI] Mapping Data... [ 80%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/test_dssc_cls.py [AutoAPI] Mapping Data... [ 82%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/test_top_level.py [AutoAPI] Mapping Data... [ 85%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/test_misc.py [AutoAPI] Mapping Data... [ 87%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/test_utils.py [AutoAPI] Mapping Data... [ 90%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/routines/__init__.py [AutoAPI] Mapping Data... [ 92%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/routines/XAS.py [AutoAPI] Mapping Data... [ 95%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/routines/Reflectivity.py [AutoAPI] Mapping Data... [ 97%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/routines/knife_edge.py [AutoAPI] Mapping Data... [100%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/routines/boz.py [AutoAPI] Rendering Data... [ 2%] toolbox_scs [AutoAPI] Rendering Data... [ 5%] toolbox_scs.mnemonics_machinery [AutoAPI] Rendering Data... [ 7%] toolbox_scs.constants [AutoAPI] Rendering Data... [ 10%] toolbox_scs.load [AutoAPI] Rendering Data... [ 12%] toolbox_scs.misc [AutoAPI] Rendering Data... [ 15%] toolbox_scs.misc.laser_utils [AutoAPI] Rendering Data... [ 17%] toolbox_scs.misc.undulator [AutoAPI] Rendering Data... [ 20%] toolbox_scs.misc.bunch_pattern_external [AutoAPI] Rendering Data... [ 22%] toolbox_scs.misc.bunch_pattern [AutoAPI] Rendering Data... [ 25%] toolbox_scs.util [AutoAPI] Rendering Data... [ 27%] toolbox_scs.util.pkg [AutoAPI] Rendering Data... [ 30%] toolbox_scs.util.exceptions [AutoAPI] Rendering Data... [ 32%] toolbox_scs.base [AutoAPI] Rendering Data... [ 35%] toolbox_scs.base.knife_edge [AutoAPI] Rendering Data... [ 37%] toolbox_scs.base.tests [AutoAPI] Rendering Data... [ 40%] toolbox_scs.base.tests.test_knife_edge [AutoAPI] Rendering Data... [ 42%] toolbox_scs.detectors.dssc_processing [AutoAPI] Rendering Data... [ 45%] toolbox_scs.detectors [AutoAPI] Rendering Data... [ 47%] toolbox_scs.detectors.hrixs [AutoAPI] Rendering Data... [ 50%] toolbox_scs.detectors.azimuthal_integrator [AutoAPI] Rendering Data... [ 52%] toolbox_scs.detectors.dssc_data [AutoAPI] Rendering Data... [ 55%] toolbox_scs.detectors.pes [AutoAPI] Rendering Data... [ 57%] toolbox_scs.detectors.dssc_plot [AutoAPI] Rendering Data... [ 60%] toolbox_scs.detectors.fccd [AutoAPI] Rendering Data... [ 62%] toolbox_scs.detectors.bam_detectors [AutoAPI] Rendering Data... [ 65%] toolbox_scs.detectors.digitizers [AutoAPI] Rendering Data... [ 67%] toolbox_scs.detectors.dssc_misc [AutoAPI] Rendering Data... [ 70%] toolbox_scs.detectors.dssc [AutoAPI] Rendering Data... [ 72%] toolbox_scs.detectors.xgm [AutoAPI] Rendering Data... [ 75%] toolbox_scs.test [AutoAPI] Rendering Data... [ 77%] toolbox_scs.test.test_hrixs [AutoAPI] Rendering Data... [ 80%] toolbox_scs.test.test_dssc_cls [AutoAPI] Rendering Data... [ 82%] toolbox_scs.test.test_top_level [AutoAPI] Rendering Data... [ 85%] toolbox_scs.test.test_misc [AutoAPI] Rendering Data... [ 87%] toolbox_scs.test.test_utils [AutoAPI] Rendering Data... [ 90%] toolbox_scs.routines [AutoAPI] Rendering Data... [ 92%] toolbox_scs.routines.XAS [AutoAPI] Rendering Data... [ 95%] toolbox_scs.routines.Reflectivity [AutoAPI] Rendering Data... [ 97%] toolbox_scs.routines.knife_edge [AutoAPI] Rendering Data... [100%] toolbox_scs.routines.boz [autosummary] generating autosummary for: Azimuthal integration of DSSC with pyFAI.ipynb, BOZ analysis part I.a Correction determination.ipynb, BOZ analysis part I.b Correction validation.ipynb, BOZ analysis part II.1 Small data.ipynb, BOZ analysis part II.2 Binning.ipynb, DSSC fine delay with SCS toolbox.ipynb, Dask DSSC module binning.ipynb, HRIXS.ipynb, How to extract peaks from digitizer traces.ipynb, Loading_data_in_memory.ipynb, PES_spectra_extraction.ipynb, Transient reflectivity measurement.ipynb, bunch_pattern_decoding.rst, changelog.rst, dssc/DSSCBinner.rst, howtos.rst, index.rst, load.rst, maintainers.rst building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 19 source files that are out of date updating environment: [new config] 60 added, 0 changed, 0 removed reading sources... [ 1%] Azimuthal integration of DSSC with pyFAI reading sources... [ 3%] BOZ analysis part I.a Correction determination reading sources... [ 5%] BOZ analysis part I.b Correction validation reading sources... [ 6%] BOZ analysis part II.1 Small data reading sources... [ 8%] BOZ analysis part II.2 Binning reading sources... [ 10%] DSSC fine delay with SCS toolbox reading sources... [ 11%] Dask DSSC module binning reading sources... [ 13%] HRIXS reading sources... [ 15%] How to extract peaks from digitizer traces reading sources... [ 16%] Loading_data_in_memory reading sources... [ 18%] PES_spectra_extraction reading sources... [ 20%] Transient reflectivity measurement reading sources... [ 21%] autoapi/index reading sources... [ 23%] autoapi/toolbox_scs/base/index reading sources... [ 25%] autoapi/toolbox_scs/base/knife_edge/index reading sources... [ 26%] autoapi/toolbox_scs/base/tests/index reading sources... [ 28%] autoapi/toolbox_scs/base/tests/test_knife_edge/index reading sources... [ 30%] autoapi/toolbox_scs/constants/index reading sources... [ 31%] autoapi/toolbox_scs/detectors/azimuthal_integrator/index reading sources... [ 33%] autoapi/toolbox_scs/detectors/bam_detectors/index reading sources... [ 35%] autoapi/toolbox_scs/detectors/digitizers/index reading sources... [ 36%] autoapi/toolbox_scs/detectors/dssc/index reading sources... [ 38%] autoapi/toolbox_scs/detectors/dssc_data/index reading sources... [ 40%] autoapi/toolbox_scs/detectors/dssc_misc/index reading sources... [ 41%] autoapi/toolbox_scs/detectors/dssc_plot/index reading sources... [ 43%] autoapi/toolbox_scs/detectors/dssc_processing/index reading sources... [ 45%] autoapi/toolbox_scs/detectors/fccd/index reading sources... [ 46%] autoapi/toolbox_scs/detectors/hrixs/index reading sources... [ 48%] autoapi/toolbox_scs/detectors/index reading sources... [ 50%] autoapi/toolbox_scs/detectors/pes/index reading sources... [ 51%] autoapi/toolbox_scs/detectors/xgm/index reading sources... [ 53%] autoapi/toolbox_scs/index reading sources... [ 55%] autoapi/toolbox_scs/load/index reading sources... [ 56%] autoapi/toolbox_scs/misc/bunch_pattern/index reading sources... [ 58%] autoapi/toolbox_scs/misc/bunch_pattern_external/index reading sources... [ 60%] autoapi/toolbox_scs/misc/index reading sources... [ 61%] autoapi/toolbox_scs/misc/laser_utils/index reading sources... [ 63%] autoapi/toolbox_scs/misc/undulator/index reading sources... [ 65%] autoapi/toolbox_scs/mnemonics_machinery/index reading sources... [ 66%] autoapi/toolbox_scs/routines/Reflectivity/index reading sources... [ 68%] autoapi/toolbox_scs/routines/XAS/index reading sources... [ 70%] autoapi/toolbox_scs/routines/boz/index reading sources... [ 71%] autoapi/toolbox_scs/routines/index reading sources... [ 73%] autoapi/toolbox_scs/routines/knife_edge/index reading sources... [ 75%] autoapi/toolbox_scs/test/index reading sources... [ 76%] autoapi/toolbox_scs/test/test_dssc_cls/index reading sources... [ 78%] autoapi/toolbox_scs/test/test_hrixs/index reading sources... [ 80%] autoapi/toolbox_scs/test/test_misc/index reading sources... [ 81%] autoapi/toolbox_scs/test/test_top_level/index reading sources... [ 83%] autoapi/toolbox_scs/test/test_utils/index reading sources... [ 85%] autoapi/toolbox_scs/util/exceptions/index reading sources... [ 86%] autoapi/toolbox_scs/util/index reading sources... [ 88%] autoapi/toolbox_scs/util/pkg/index reading sources... [ 90%] bunch_pattern_decoding reading sources... [ 91%] changelog reading sources... [ 93%] dssc/DSSCBinner reading sources... [ 95%] howtos reading sources... [ 96%] index [AutoAPI] Adding AutoAPI TOCTree [autoapi/index] to index.rst reading sources... [ 98%] load reading sources... [100%] maintainers /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/base/knife_edge/index.rst:4: WARNING: duplicate object description of toolbox_scs.base.knife_edge, other instance in autoapi/toolbox_scs/base/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/dssc_misc/index.rst:71: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/dssc_misc/index.rst:30: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/fccd/index.rst:6: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:7: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:99: WARNING: duplicate object description of toolbox_scs.detectors.hrixs.hRIXS.PROPOSAL, other instance in autoapi/toolbox_scs/detectors/hrixs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:104: WARNING: duplicate object description of toolbox_scs.detectors.hrixs.hRIXS.X_RANGE, other instance in autoapi/toolbox_scs/detectors/hrixs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:109: WARNING: duplicate object description of toolbox_scs.detectors.hrixs.hRIXS.Y_RANGE, other instance in autoapi/toolbox_scs/detectors/hrixs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:114: WARNING: duplicate object description of toolbox_scs.detectors.hrixs.hRIXS.THRESHOLD, other instance in autoapi/toolbox_scs/detectors/hrixs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:119: WARNING: duplicate object description of toolbox_scs.detectors.hrixs.hRIXS.STD_THRESHOLD, other instance in autoapi/toolbox_scs/detectors/hrixs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:134: WARNING: duplicate object description of toolbox_scs.detectors.hrixs.hRIXS.BINS, other instance in autoapi/toolbox_scs/detectors/hrixs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:144: WARNING: duplicate object description of toolbox_scs.detectors.hrixs.hRIXS.USE_DARK, other instance in autoapi/toolbox_scs/detectors/hrixs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:159: WARNING: duplicate object description of toolbox_scs.detectors.hrixs.hRIXS.FIELDS, other instance in autoapi/toolbox_scs/detectors/hrixs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:635: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:30: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:7: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:819: WARNING: duplicate object description of toolbox_scs.detectors.hRIXS.PROPOSAL, other instance in autoapi/toolbox_scs/detectors/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:824: WARNING: duplicate object description of toolbox_scs.detectors.hRIXS.X_RANGE, other instance in autoapi/toolbox_scs/detectors/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:829: WARNING: duplicate object description of toolbox_scs.detectors.hRIXS.Y_RANGE, other instance in autoapi/toolbox_scs/detectors/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:834: WARNING: duplicate object description of toolbox_scs.detectors.hRIXS.THRESHOLD, other instance in autoapi/toolbox_scs/detectors/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:839: WARNING: duplicate object description of toolbox_scs.detectors.hRIXS.STD_THRESHOLD, other instance in autoapi/toolbox_scs/detectors/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:854: WARNING: duplicate object description of toolbox_scs.detectors.hRIXS.BINS, other instance in autoapi/toolbox_scs/detectors/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:864: WARNING: duplicate object description of toolbox_scs.detectors.hRIXS.USE_DARK, other instance in autoapi/toolbox_scs/detectors/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:879: WARNING: duplicate object description of toolbox_scs.detectors.hRIXS.FIELDS, other instance in autoapi/toolbox_scs/detectors/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:710: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:30: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:894: WARNING: duplicate object description of toolbox_scs.hRIXS.PROPOSAL, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:899: WARNING: duplicate object description of toolbox_scs.hRIXS.X_RANGE, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:904: WARNING: duplicate object description of toolbox_scs.hRIXS.Y_RANGE, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:909: WARNING: duplicate object description of toolbox_scs.hRIXS.THRESHOLD, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:914: WARNING: duplicate object description of toolbox_scs.hRIXS.STD_THRESHOLD, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:929: WARNING: duplicate object description of toolbox_scs.hRIXS.BINS, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:939: WARNING: duplicate object description of toolbox_scs.hRIXS.USE_DARK, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:954: WARNING: duplicate object description of toolbox_scs.hRIXS.FIELDS, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1307: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1324: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:29: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1438: WARNING: duplicate object description of toolbox_scs.__all__, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1450: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:8: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1535: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1592: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1603: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1616: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1730: WARNING: duplicate object description of toolbox_scs.__all__, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1742: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1749: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1765: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1903: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1973: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:8: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:2004: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:2129: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:2176: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:2233: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:2236: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:2239: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:2258: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:2379: WARNING: duplicate object description of toolbox_scs.__all__, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1375: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/load/index.rst:4: WARNING: duplicate object description of toolbox_scs.load, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/load/index.rst:48: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/load/index.rst:65: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/load/index.rst:29: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/load/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/load/index.rst:148: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/load/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:85: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:8: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:126: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/index.rst:61: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/index.rst:8: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/index.rst:146: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/index.rst:203: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/index.rst:214: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/index.rst:227: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/laser_utils/index.rst:28: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/laser_utils/index.rst:41: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/laser_utils/index.rst:55: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/XAS/index.rst:40: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/XAS/index.rst:7: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/XAS/index.rst:47: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/XAS/index.rst:63: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:192: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:262: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:8: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:293: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:418: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:465: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:522: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:525: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:528: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:547: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:86: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:7: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:93: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:109: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:247: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:317: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:8: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:348: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:473: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:520: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:577: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:580: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:583: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:602: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/knife_edge/index.rst:4: WARNING: duplicate object description of toolbox_scs.routines.knife_edge, other instance in autoapi/toolbox_scs/routines/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/test/test_dssc_cls/index.rst:90: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/test/test_dssc_cls/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/test/test_hrixs/index.rst:46: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/test/test_hrixs/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/test/test_misc/index.rst:82: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/test/test_misc/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/test/test_top_level/index.rst:76: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/test/test_top_level/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/test/test_utils/index.rst:73: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/test/test_utils/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/index.rst:130: CRITICAL: Title level inconsistent: Contribute ~~~~~~~~~~ WARNING: nbsphinx_widgets_path not given and ipywidgets module unavailable looking for now-outdated files... none found pickling environment... done checking consistency... /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Azimuthal integration of DSSC with pyFAI.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.2 Binning.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Dask DSSC module binning.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/HRIXS.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/How to extract peaks from digitizer traces.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Loading_data_in_memory.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/PES_spectra_extraction.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Transient reflectivity measurement.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/index.rst: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/bunch_pattern_decoding.rst: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/dssc/DSSCBinner.rst: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/load.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 1%] Azimuthal integration of DSSC with pyFAI writing output... [ 3%] BOZ analysis part I.a Correction determination writing output... [ 5%] BOZ analysis part I.b Correction validation writing output... [ 6%] BOZ analysis part II.1 Small data writing output... [ 8%] BOZ analysis part II.2 Binning writing output... [ 10%] DSSC fine delay with SCS toolbox writing output... [ 11%] Dask DSSC module binning writing output... [ 13%] HRIXS writing output... [ 15%] How to extract peaks from digitizer traces writing output... [ 16%] Loading_data_in_memory writing output... [ 18%] PES_spectra_extraction writing output... [ 20%] Transient reflectivity measurement writing output... [ 21%] autoapi/index writing output... [ 23%] autoapi/toolbox_scs/base/index writing output... [ 25%] autoapi/toolbox_scs/base/knife_edge/index writing output... [ 26%] autoapi/toolbox_scs/base/tests/index writing output... [ 28%] autoapi/toolbox_scs/base/tests/test_knife_edge/index writing output... [ 30%] autoapi/toolbox_scs/constants/index writing output... [ 31%] autoapi/toolbox_scs/detectors/azimuthal_integrator/index writing output... [ 33%] autoapi/toolbox_scs/detectors/bam_detectors/index writing output... [ 35%] autoapi/toolbox_scs/detectors/digitizers/index writing output... [ 36%] autoapi/toolbox_scs/detectors/dssc/index writing output... [ 38%] autoapi/toolbox_scs/detectors/dssc_data/index writing output... [ 40%] autoapi/toolbox_scs/detectors/dssc_misc/index writing output... [ 41%] autoapi/toolbox_scs/detectors/dssc_plot/index writing output... [ 43%] autoapi/toolbox_scs/detectors/dssc_processing/index writing output... [ 45%] autoapi/toolbox_scs/detectors/fccd/index writing output... [ 46%] autoapi/toolbox_scs/detectors/hrixs/index writing output... [ 48%] autoapi/toolbox_scs/detectors/index writing output... [ 50%] autoapi/toolbox_scs/detectors/pes/index writing output... [ 51%] autoapi/toolbox_scs/detectors/xgm/index writing output... [ 53%] autoapi/toolbox_scs/index writing output... [ 55%] autoapi/toolbox_scs/load/index writing output... [ 56%] autoapi/toolbox_scs/misc/bunch_pattern/index writing output... [ 58%] autoapi/toolbox_scs/misc/bunch_pattern_external/index writing output... [ 60%] autoapi/toolbox_scs/misc/index writing output... [ 61%] autoapi/toolbox_scs/misc/laser_utils/index writing output... [ 63%] autoapi/toolbox_scs/misc/undulator/index writing output... [ 65%] autoapi/toolbox_scs/mnemonics_machinery/index writing output... [ 66%] autoapi/toolbox_scs/routines/Reflectivity/index writing output... [ 68%] autoapi/toolbox_scs/routines/XAS/index writing output... [ 70%] autoapi/toolbox_scs/routines/boz/index writing output... [ 71%] autoapi/toolbox_scs/routines/index writing output... [ 73%] autoapi/toolbox_scs/routines/knife_edge/index writing output... [ 75%] autoapi/toolbox_scs/test/index writing output... [ 76%] autoapi/toolbox_scs/test/test_dssc_cls/index writing output... [ 78%] autoapi/toolbox_scs/test/test_hrixs/index writing output... [ 80%] autoapi/toolbox_scs/test/test_misc/index writing output... [ 81%] autoapi/toolbox_scs/test/test_top_level/index writing output... [ 83%] autoapi/toolbox_scs/test/test_utils/index writing output... [ 85%] autoapi/toolbox_scs/util/exceptions/index writing output... [ 86%] autoapi/toolbox_scs/util/index writing output... [ 88%] autoapi/toolbox_scs/util/pkg/index writing output... [ 90%] bunch_pattern_decoding writing output... [ 91%] changelog writing output... [ 93%] dssc/DSSCBinner writing output... [ 95%] howtos writing output... [ 96%] index writing output... [ 98%] load writing output... [100%] maintainers /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Azimuthal integration of DSSC with pyFAI.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Azimuthal integration of DSSC with pyFAI.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Azimuthal integration of DSSC with pyFAI.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Azimuthal integration of DSSC with pyFAI.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Azimuthal integration of DSSC with pyFAI.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Azimuthal integration of DSSC with pyFAI.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Azimuthal integration of DSSC with pyFAI.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Azimuthal integration of DSSC with pyFAI.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Azimuthal integration of DSSC with pyFAI.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Azimuthal integration of DSSC with pyFAI.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Dask DSSC module binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Dask DSSC module binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Dask DSSC module binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Dask DSSC module binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Dask DSSC module binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Dask DSSC module binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Dask DSSC module binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Dask DSSC module binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Dask DSSC module binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/HRIXS.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/HRIXS.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/HRIXS.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/HRIXS.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/HRIXS.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/HRIXS.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/HRIXS.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/HRIXS.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/HRIXS.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Loading_data_in_memory.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Loading_data_in_memory.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Loading_data_in_memory.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Loading_data_in_memory.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Loading_data_in_memory.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Loading_data_in_memory.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Loading_data_in_memory.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/PES_spectra_extraction.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/PES_spectra_extraction.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/PES_spectra_extraction.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/PES_spectra_extraction.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/PES_spectra_extraction.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/PES_spectra_extraction.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/PES_spectra_extraction.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/PES_spectra_extraction.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/PES_spectra_extraction.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Transient reflectivity measurement.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Transient reflectivity measurement.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Transient reflectivity measurement.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Transient reflectivity measurement.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Transient reflectivity measurement.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/bunch_pattern_decoding.rst:4: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/bunch_pattern_decoding.rst:21: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/bunch_pattern_decoding.rst:27: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/bunch_pattern_decoding.rst:33: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/dssc/DSSCBinner.rst:15: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/dssc/DSSCBinner.rst:32: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/dssc/DSSCBinner.rst:38: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/dssc/DSSCBinner.rst:44: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/dssc/DSSCBinner.rst:49: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/dssc/DSSCBinner.rst:60: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/dssc/DSSCBinner.rst:68: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/dssc/DSSCBinner.rst:74: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/dssc/DSSCBinner.rst:85: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/dssc/DSSCBinner.rst:92: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/dssc/DSSCBinner.rst:105: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/dssc/DSSCBinner.rst:111: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/dssc/DSSCBinner.rst:117: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/dssc/DSSCBinner.rst:121: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/dssc/DSSCBinner.rst:135: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/dssc/DSSCBinner.rst:141: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/dssc/DSSCBinner.rst:152: WARNING: Pygments lexer name 'ipython3' is not known generating indices... genindex py-modindex done copying notebooks ... [ 8%] Azimuthal integration of DSSC with pyFAI.ipynb copying notebooks ... [ 16%] BOZ analysis part I.a Correction determination.ipynb copying notebooks ... [ 25%] BOZ analysis part I.b Correction validation.ipynb copying notebooks ... [ 33%] BOZ analysis part II.1 Small data.ipynb copying notebooks ... [ 41%] BOZ analysis part II.2 Binning.ipynb copying notebooks ... [ 50%] DSSC fine delay with SCS toolbox.ipynb copying notebooks ... [ 58%] Dask DSSC module binning.ipynb copying notebooks ... [ 66%] HRIXS.ipynb copying notebooks ... [ 75%] How to extract peaks from digitizer traces.ipynb copying notebooks ... [ 83%] Loading_data_in_memory.ipynb copying notebooks ... [ 91%] PES_spectra_extraction.ipynb copying notebooks ... [100%] Transient reflectivity measurement.ipynb highlighting module code... [ 2%] toolbox_scs.base highlighting module code... [ 5%] toolbox_scs.base.knife_edge highlighting module code... [ 8%] toolbox_scs.base.tests.test_knife_edge highlighting module code... [ 11%] toolbox_scs.constants highlighting module code... [ 13%] toolbox_scs.detectors highlighting module code... [ 16%] toolbox_scs.detectors.azimuthal_integrator highlighting module code... [ 19%] toolbox_scs.detectors.bam_detectors highlighting module code... [ 22%] toolbox_scs.detectors.digitizers highlighting module code... [ 25%] toolbox_scs.detectors.dssc highlighting module code... [ 27%] toolbox_scs.detectors.dssc_data highlighting module code... [ 30%] toolbox_scs.detectors.dssc_misc highlighting module code... [ 33%] toolbox_scs.detectors.dssc_plot highlighting module code... [ 36%] toolbox_scs.detectors.dssc_processing highlighting module code... [ 38%] toolbox_scs.detectors.fccd highlighting module code... [ 41%] toolbox_scs.detectors.hrixs highlighting module code... [ 44%] toolbox_scs.detectors.pes highlighting module code... [ 47%] toolbox_scs.detectors.xgm highlighting module code... [ 50%] toolbox_scs.load highlighting module code... [ 52%] toolbox_scs.misc highlighting module code... [ 55%] toolbox_scs.misc.bunch_pattern highlighting module code... [ 58%] toolbox_scs.misc.bunch_pattern_external highlighting module code... [ 61%] toolbox_scs.misc.laser_utils highlighting module code... [ 63%] toolbox_scs.misc.undulator highlighting module code... [ 66%] toolbox_scs.mnemonics_machinery highlighting module code... [ 69%] toolbox_scs.routines highlighting module code... [ 72%] toolbox_scs.routines.Reflectivity highlighting module code... [ 75%] toolbox_scs.routines.XAS highlighting module code... [ 77%] toolbox_scs.routines.boz highlighting module code... [ 80%] toolbox_scs.routines.knife_edge highlighting module code... [ 83%] toolbox_scs.test.test_dssc_cls highlighting module code... [ 86%] toolbox_scs.test.test_hrixs highlighting module code... [ 88%] toolbox_scs.test.test_misc highlighting module code... [ 91%] toolbox_scs.test.test_top_level highlighting module code... [ 94%] toolbox_scs.test.test_utils highlighting module code... [ 97%] toolbox_scs.util.exceptions highlighting module code... [100%] toolbox_scs.util.pkg writing additional pages... search done copying images... [ 2%] _build/doctrees-readthedocs/nbsphinx/Azimuthal_integration_of_DSSC_with_pyFAI_9_1.png copying images... [ 5%] _build/doctrees-readthedocs/nbsphinx/Azimuthal_integration_of_DSSC_with_pyFAI_11_0.png copying images... [ 7%] _build/doctrees-readthedocs/nbsphinx/Azimuthal_integration_of_DSSC_with_pyFAI_13_1.png copying images... [ 10%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.a_Correction_determination_14_0.png copying images... [ 12%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.a_Correction_determination_20_0.png copying images... [ 15%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.a_Correction_determination_23_0.png copying images... [ 17%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.a_Correction_determination_27_0.png copying images... [ 20%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.a_Correction_determination_36_0.png copying images... [ 22%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.a_Correction_determination_45_1.png copying images... [ 25%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.a_Correction_determination_48_0.png copying images... [ 27%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.a_Correction_determination_51_0.png copying images... [ 30%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.b_Correction_validation_9_0.png copying images... [ 32%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.b_Correction_validation_14_0.png copying images... [ 35%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.b_Correction_validation_17_0.png copying images... [ 37%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.b_Correction_validation_23_0.png copying images... [ 40%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.b_Correction_validation_28_0.png copying images... [ 42%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.b_Correction_validation_31_0.png copying images... [ 45%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.b_Correction_validation_35_1.png copying images... [ 47%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_II.1_Small_data_9_0.png copying images... [ 50%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_II.1_Small_data_13_0.png copying images... [ 52%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_II.1_Small_data_20_0.png copying images... [ 55%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_II.1_Small_data_25_0.png copying images... [ 57%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_II.1_Small_data_29_1.png copying images... [ 60%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_II.2_Binning_11_0.png copying images... [ 62%] _build/doctrees-readthedocs/nbsphinx/DSSC_fine_delay_with_SCS_toolbox_15_1.png copying images... [ 65%] _build/doctrees-readthedocs/nbsphinx/DSSC_fine_delay_with_SCS_toolbox_22_1.png copying images... [ 67%] _build/doctrees-readthedocs/nbsphinx/HRIXS_9_1.png copying images... [ 70%] _build/doctrees-readthedocs/nbsphinx/HRIXS_13_1.png copying images... [ 72%] _build/doctrees-readthedocs/nbsphinx/HRIXS_17_1.png copying images... [ 75%] _build/doctrees-readthedocs/nbsphinx/Loading_data_in_memory_20_1.png copying images... [ 77%] _build/doctrees-readthedocs/nbsphinx/PES_spectra_extraction_5_1.png copying images... [ 80%] _build/doctrees-readthedocs/nbsphinx/PES_spectra_extraction_12_1.png copying images... [ 82%] _build/doctrees-readthedocs/nbsphinx/PES_spectra_extraction_15_1.png copying images... [ 85%] _build/doctrees-readthedocs/nbsphinx/PES_spectra_extraction_15_2.png copying images... [ 87%] _build/doctrees-readthedocs/nbsphinx/PES_spectra_extraction_18_0.png copying images... [ 90%] _build/doctrees-readthedocs/nbsphinx/PES_spectra_extraction_18_1.png copying images... [ 92%] _build/doctrees-readthedocs/nbsphinx/Transient_reflectivity_measurement_2_1.png copying images... [ 95%] _build/doctrees-readthedocs/nbsphinx/Transient_reflectivity_measurement_5_1.png copying images... [ 97%] _build/doctrees-readthedocs/nbsphinx/Transient_reflectivity_measurement_12_0.png copying images... [100%] metadata.png copying downloadable files... [ 50%] scripts/bin_dssc_module_job.sh copying downloadable files... [100%] scripts/boz_parameters_job.sh copying static files... done copying readthedocs static files... done copying searchtools... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 380 warnings. The HTML pages are in _build/html. [rtd-command-info] start-time: 2023-01-16T10:37:04.983583Z, end-time: 2023-01-16T10:37:23.279049Z, duration: 18, exit-code: 0 python /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/docs-build-test/bin/sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v5.3.0 WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English). making output directory... done WARNING: html_static_path entry '_static' does not exist WARNING: extlinks: Sphinx-6.0 will require a caption string to contain exactly one '%s' and all other '%' need to be escaped as '%%'. WARNING: extlinks: Sphinx-6.0 will require a caption string to contain exactly one '%s' and all other '%' need to be escaped as '%%'. WARNING: extlinks: Sphinx-6.0 will require a caption string to contain exactly one '%s' and all other '%' need to be escaped as '%%'. [AutoAPI] Ignoring /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/deprecated/dssc_single_module.py [AutoAPI] Ignoring /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/deprecated/dssc_bkp.py [AutoAPI] Reading files... [ 2%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/__init__.py [AutoAPI] Reading files... [ 5%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/mnemonics_machinery.py [AutoAPI] Reading files... [ 7%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/constants.py [AutoAPI] Reading files... [ 10%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/load.py [AutoAPI] Reading files... [ 12%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/misc/__init__.py [AutoAPI] Reading files... [ 15%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/misc/laser_utils.py [AutoAPI] Reading files... [ 17%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/misc/undulator.py [AutoAPI] Reading files... [ 20%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/misc/bunch_pattern_external.py [AutoAPI] Reading files... [ 22%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/misc/bunch_pattern.py [AutoAPI] Reading files... [ 25%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/util/__init__.py [AutoAPI] Reading files... [ 27%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/util/pkg.py [AutoAPI] Reading files... [ 30%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/util/exceptions.py [AutoAPI] Reading files... [ 32%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/base/__init__.py [AutoAPI] Reading files... [ 35%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/base/knife_edge.py [AutoAPI] Reading files... [ 37%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/base/tests/__init__.py [AutoAPI] Reading files... [ 40%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/base/tests/test_knife_edge.py [AutoAPI] Reading files... [ 42%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/dssc_processing.py [AutoAPI] Reading files... [ 45%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/__init__.py [AutoAPI] Reading files... [ 47%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/hrixs.py [AutoAPI] Reading files... [ 50%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/azimuthal_integrator.py [AutoAPI] Reading files... [ 52%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/dssc_data.py [AutoAPI] Reading files... [ 55%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/pes.py [AutoAPI] Reading files... [ 57%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/dssc_plot.py [AutoAPI] Reading files... [ 60%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/fccd.py [AutoAPI] Reading files... [ 62%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/bam_detectors.py [AutoAPI] Reading files... [ 65%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/digitizers.py [AutoAPI] Reading files... [ 67%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/dssc_misc.py [AutoAPI] Reading files... [ 70%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/dssc.py [AutoAPI] Reading files... [ 72%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/xgm.py [AutoAPI] Reading files... [ 75%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/__init__.py [AutoAPI] Reading files... [ 77%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/test_hrixs.py [AutoAPI] Reading files... [ 80%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/test_dssc_cls.py [AutoAPI] Reading files... [ 82%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/test_top_level.py [AutoAPI] Reading files... [ 85%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/test_misc.py [AutoAPI] Reading files... [ 87%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/test_utils.py [AutoAPI] Reading files... [ 90%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/routines/__init__.py [AutoAPI] Reading files... [ 92%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/routines/XAS.py [AutoAPI] Reading files... [ 95%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/routines/Reflectivity.py [AutoAPI] Reading files... [ 97%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/routines/knife_edge.py [AutoAPI] Reading files... [100%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/routines/boz.py WARNING: Cannot resolve import of unknown module toolbox_scs.util.data_access in toolbox_scs.test.test_utils [AutoAPI] Mapping Data... [ 2%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/__init__.py [AutoAPI] Mapping Data... [ 5%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/mnemonics_machinery.py [AutoAPI] Mapping Data... [ 7%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/constants.py [AutoAPI] Mapping Data... [ 10%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/load.py [AutoAPI] Mapping Data... [ 12%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/misc/__init__.py [AutoAPI] Mapping Data... [ 15%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/misc/laser_utils.py [AutoAPI] Mapping Data... [ 17%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/misc/undulator.py [AutoAPI] Mapping Data... [ 20%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/misc/bunch_pattern_external.py [AutoAPI] Mapping Data... [ 22%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/misc/bunch_pattern.py [AutoAPI] Mapping Data... [ 25%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/util/__init__.py [AutoAPI] Mapping Data... [ 27%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/util/pkg.py [AutoAPI] Mapping Data... [ 30%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/util/exceptions.py [AutoAPI] Mapping Data... [ 32%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/base/__init__.py [AutoAPI] Mapping Data... [ 35%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/base/knife_edge.py [AutoAPI] Mapping Data... [ 37%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/base/tests/__init__.py [AutoAPI] Mapping Data... [ 40%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/base/tests/test_knife_edge.py [AutoAPI] Mapping Data... [ 42%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/dssc_processing.py [AutoAPI] Mapping Data... [ 45%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/__init__.py [AutoAPI] Mapping Data... [ 47%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/hrixs.py [AutoAPI] Mapping Data... [ 50%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/azimuthal_integrator.py [AutoAPI] Mapping Data... [ 52%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/dssc_data.py [AutoAPI] Mapping Data... [ 55%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/pes.py [AutoAPI] Mapping Data... [ 57%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/dssc_plot.py [AutoAPI] Mapping Data... [ 60%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/fccd.py [AutoAPI] Mapping Data... [ 62%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/bam_detectors.py [AutoAPI] Mapping Data... [ 65%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/digitizers.py [AutoAPI] Mapping Data... [ 67%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/dssc_misc.py [AutoAPI] Mapping Data... [ 70%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/dssc.py [AutoAPI] Mapping Data... [ 72%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/detectors/xgm.py [AutoAPI] Mapping Data... [ 75%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/__init__.py [AutoAPI] Mapping Data... [ 77%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/test_hrixs.py [AutoAPI] Mapping Data... [ 80%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/test_dssc_cls.py [AutoAPI] Mapping Data... [ 82%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/test_top_level.py [AutoAPI] Mapping Data... [ 85%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/test_misc.py [AutoAPI] Mapping Data... [ 87%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/test/test_utils.py [AutoAPI] Mapping Data... [ 90%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/routines/__init__.py [AutoAPI] Mapping Data... [ 92%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/routines/XAS.py [AutoAPI] Mapping Data... [ 95%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/routines/Reflectivity.py [AutoAPI] Mapping Data... [ 97%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/routines/knife_edge.py [AutoAPI] Mapping Data... [100%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/src/toolbox_scs/routines/boz.py [AutoAPI] Rendering Data... [ 2%] toolbox_scs [AutoAPI] Rendering Data... [ 5%] toolbox_scs.mnemonics_machinery [AutoAPI] Rendering Data... [ 7%] toolbox_scs.constants [AutoAPI] Rendering Data... [ 10%] toolbox_scs.load [AutoAPI] Rendering Data... [ 12%] toolbox_scs.misc [AutoAPI] Rendering Data... [ 15%] toolbox_scs.misc.laser_utils [AutoAPI] Rendering Data... [ 17%] toolbox_scs.misc.undulator [AutoAPI] Rendering Data... [ 20%] toolbox_scs.misc.bunch_pattern_external [AutoAPI] Rendering Data... [ 22%] toolbox_scs.misc.bunch_pattern [AutoAPI] Rendering Data... [ 25%] toolbox_scs.util [AutoAPI] Rendering Data... [ 27%] toolbox_scs.util.pkg [AutoAPI] Rendering Data... [ 30%] toolbox_scs.util.exceptions [AutoAPI] Rendering Data... [ 32%] toolbox_scs.base [AutoAPI] Rendering Data... [ 35%] toolbox_scs.base.knife_edge [AutoAPI] Rendering Data... [ 37%] toolbox_scs.base.tests [AutoAPI] Rendering Data... [ 40%] toolbox_scs.base.tests.test_knife_edge [AutoAPI] Rendering Data... [ 42%] toolbox_scs.detectors.dssc_processing [AutoAPI] Rendering Data... [ 45%] toolbox_scs.detectors [AutoAPI] Rendering Data... [ 47%] toolbox_scs.detectors.hrixs [AutoAPI] Rendering Data... [ 50%] toolbox_scs.detectors.azimuthal_integrator [AutoAPI] Rendering Data... [ 52%] toolbox_scs.detectors.dssc_data [AutoAPI] Rendering Data... [ 55%] toolbox_scs.detectors.pes [AutoAPI] Rendering Data... [ 57%] toolbox_scs.detectors.dssc_plot [AutoAPI] Rendering Data... [ 60%] toolbox_scs.detectors.fccd [AutoAPI] Rendering Data... [ 62%] toolbox_scs.detectors.bam_detectors [AutoAPI] Rendering Data... [ 65%] toolbox_scs.detectors.digitizers [AutoAPI] Rendering Data... [ 67%] toolbox_scs.detectors.dssc_misc [AutoAPI] Rendering Data... [ 70%] toolbox_scs.detectors.dssc [AutoAPI] Rendering Data... [ 72%] toolbox_scs.detectors.xgm [AutoAPI] Rendering Data... [ 75%] toolbox_scs.test [AutoAPI] Rendering Data... [ 77%] toolbox_scs.test.test_hrixs [AutoAPI] Rendering Data... [ 80%] toolbox_scs.test.test_dssc_cls [AutoAPI] Rendering Data... [ 82%] toolbox_scs.test.test_top_level [AutoAPI] Rendering Data... [ 85%] toolbox_scs.test.test_misc [AutoAPI] Rendering Data... [ 87%] toolbox_scs.test.test_utils [AutoAPI] Rendering Data... [ 90%] toolbox_scs.routines [AutoAPI] Rendering Data... [ 92%] toolbox_scs.routines.XAS [AutoAPI] Rendering Data... [ 95%] toolbox_scs.routines.Reflectivity [AutoAPI] Rendering Data... [ 97%] toolbox_scs.routines.knife_edge [AutoAPI] Rendering Data... [100%] toolbox_scs.routines.boz [autosummary] generating autosummary for: Azimuthal integration of DSSC with pyFAI.ipynb, BOZ analysis part I.a Correction determination.ipynb, BOZ analysis part I.b Correction validation.ipynb, BOZ analysis part II.1 Small data.ipynb, BOZ analysis part II.2 Binning.ipynb, DSSC fine delay with SCS toolbox.ipynb, Dask DSSC module binning.ipynb, HRIXS.ipynb, How to extract peaks from digitizer traces.ipynb, Loading_data_in_memory.ipynb, PES_spectra_extraction.ipynb, Transient reflectivity measurement.ipynb, bunch_pattern_decoding.rst, changelog.rst, dssc/DSSCBinner.rst, howtos.rst, index.rst, load.rst, maintainers.rst building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: [new config] 60 added, 0 changed, 0 removed reading sources... [ 1%] Azimuthal integration of DSSC with pyFAI reading sources... [ 3%] BOZ analysis part I.a Correction determination reading sources... [ 5%] BOZ analysis part I.b Correction validation reading sources... [ 6%] BOZ analysis part II.1 Small data reading sources... [ 8%] BOZ analysis part II.2 Binning reading sources... [ 10%] DSSC fine delay with SCS toolbox reading sources... [ 11%] Dask DSSC module binning reading sources... [ 13%] HRIXS reading sources... [ 15%] How to extract peaks from digitizer traces reading sources... [ 16%] Loading_data_in_memory reading sources... [ 18%] PES_spectra_extraction reading sources... [ 20%] Transient reflectivity measurement reading sources... [ 21%] autoapi/index reading sources... [ 23%] autoapi/toolbox_scs/base/index reading sources... [ 25%] autoapi/toolbox_scs/base/knife_edge/index reading sources... [ 26%] autoapi/toolbox_scs/base/tests/index reading sources... [ 28%] autoapi/toolbox_scs/base/tests/test_knife_edge/index reading sources... [ 30%] autoapi/toolbox_scs/constants/index reading sources... [ 31%] autoapi/toolbox_scs/detectors/azimuthal_integrator/index reading sources... [ 33%] autoapi/toolbox_scs/detectors/bam_detectors/index reading sources... [ 35%] autoapi/toolbox_scs/detectors/digitizers/index reading sources... [ 36%] autoapi/toolbox_scs/detectors/dssc/index reading sources... [ 38%] autoapi/toolbox_scs/detectors/dssc_data/index reading sources... [ 40%] autoapi/toolbox_scs/detectors/dssc_misc/index reading sources... [ 41%] autoapi/toolbox_scs/detectors/dssc_plot/index reading sources... [ 43%] autoapi/toolbox_scs/detectors/dssc_processing/index reading sources... [ 45%] autoapi/toolbox_scs/detectors/fccd/index reading sources... [ 46%] autoapi/toolbox_scs/detectors/hrixs/index reading sources... [ 48%] autoapi/toolbox_scs/detectors/index reading sources... [ 50%] autoapi/toolbox_scs/detectors/pes/index reading sources... [ 51%] autoapi/toolbox_scs/detectors/xgm/index reading sources... [ 53%] autoapi/toolbox_scs/index reading sources... [ 55%] autoapi/toolbox_scs/load/index reading sources... [ 56%] autoapi/toolbox_scs/misc/bunch_pattern/index reading sources... [ 58%] autoapi/toolbox_scs/misc/bunch_pattern_external/index reading sources... [ 60%] autoapi/toolbox_scs/misc/index reading sources... [ 61%] autoapi/toolbox_scs/misc/laser_utils/index reading sources... [ 63%] autoapi/toolbox_scs/misc/undulator/index reading sources... [ 65%] autoapi/toolbox_scs/mnemonics_machinery/index reading sources... [ 66%] autoapi/toolbox_scs/routines/Reflectivity/index reading sources... [ 68%] autoapi/toolbox_scs/routines/XAS/index reading sources... [ 70%] autoapi/toolbox_scs/routines/boz/index reading sources... [ 71%] autoapi/toolbox_scs/routines/index reading sources... [ 73%] autoapi/toolbox_scs/routines/knife_edge/index reading sources... [ 75%] autoapi/toolbox_scs/test/index reading sources... [ 76%] autoapi/toolbox_scs/test/test_dssc_cls/index reading sources... [ 78%] autoapi/toolbox_scs/test/test_hrixs/index reading sources... [ 80%] autoapi/toolbox_scs/test/test_misc/index reading sources... [ 81%] autoapi/toolbox_scs/test/test_top_level/index reading sources... [ 83%] autoapi/toolbox_scs/test/test_utils/index reading sources... [ 85%] autoapi/toolbox_scs/util/exceptions/index reading sources... [ 86%] autoapi/toolbox_scs/util/index reading sources... [ 88%] autoapi/toolbox_scs/util/pkg/index reading sources... [ 90%] bunch_pattern_decoding reading sources... [ 91%] changelog reading sources... [ 93%] dssc/DSSCBinner reading sources... [ 95%] howtos reading sources... [ 96%] index [AutoAPI] Adding AutoAPI TOCTree [autoapi/index] to index.rst reading sources... [ 98%] load reading sources... [100%] maintainers /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/base/knife_edge/index.rst:4: WARNING: duplicate object description of toolbox_scs.base.knife_edge, other instance in autoapi/toolbox_scs/base/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/dssc_misc/index.rst:71: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/dssc_misc/index.rst:30: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/fccd/index.rst:6: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:7: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:99: WARNING: duplicate object description of toolbox_scs.detectors.hrixs.hRIXS.PROPOSAL, other instance in autoapi/toolbox_scs/detectors/hrixs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:104: WARNING: duplicate object description of toolbox_scs.detectors.hrixs.hRIXS.X_RANGE, other instance in autoapi/toolbox_scs/detectors/hrixs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:109: WARNING: duplicate object description of toolbox_scs.detectors.hrixs.hRIXS.Y_RANGE, other instance in autoapi/toolbox_scs/detectors/hrixs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:114: WARNING: duplicate object description of toolbox_scs.detectors.hrixs.hRIXS.THRESHOLD, other instance in autoapi/toolbox_scs/detectors/hrixs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:119: WARNING: duplicate object description of toolbox_scs.detectors.hrixs.hRIXS.STD_THRESHOLD, other instance in autoapi/toolbox_scs/detectors/hrixs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:134: WARNING: duplicate object description of toolbox_scs.detectors.hrixs.hRIXS.BINS, other instance in autoapi/toolbox_scs/detectors/hrixs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:144: WARNING: duplicate object description of toolbox_scs.detectors.hrixs.hRIXS.USE_DARK, other instance in autoapi/toolbox_scs/detectors/hrixs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:159: WARNING: duplicate object description of toolbox_scs.detectors.hrixs.hRIXS.FIELDS, other instance in autoapi/toolbox_scs/detectors/hrixs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:635: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:30: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:7: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:819: WARNING: duplicate object description of toolbox_scs.detectors.hRIXS.PROPOSAL, other instance in autoapi/toolbox_scs/detectors/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:824: WARNING: duplicate object description of toolbox_scs.detectors.hRIXS.X_RANGE, other instance in autoapi/toolbox_scs/detectors/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:829: WARNING: duplicate object description of toolbox_scs.detectors.hRIXS.Y_RANGE, other instance in autoapi/toolbox_scs/detectors/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:834: WARNING: duplicate object description of toolbox_scs.detectors.hRIXS.THRESHOLD, other instance in autoapi/toolbox_scs/detectors/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:839: WARNING: duplicate object description of toolbox_scs.detectors.hRIXS.STD_THRESHOLD, other instance in autoapi/toolbox_scs/detectors/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:854: WARNING: duplicate object description of toolbox_scs.detectors.hRIXS.BINS, other instance in autoapi/toolbox_scs/detectors/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:864: WARNING: duplicate object description of toolbox_scs.detectors.hRIXS.USE_DARK, other instance in autoapi/toolbox_scs/detectors/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/detectors/index.rst:879: WARNING: duplicate object description of toolbox_scs.detectors.hRIXS.FIELDS, other instance in autoapi/toolbox_scs/detectors/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:710: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:30: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:894: WARNING: duplicate object description of toolbox_scs.hRIXS.PROPOSAL, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:899: WARNING: duplicate object description of toolbox_scs.hRIXS.X_RANGE, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:904: WARNING: duplicate object description of toolbox_scs.hRIXS.Y_RANGE, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:909: WARNING: duplicate object description of toolbox_scs.hRIXS.THRESHOLD, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:914: WARNING: duplicate object description of toolbox_scs.hRIXS.STD_THRESHOLD, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:929: WARNING: duplicate object description of toolbox_scs.hRIXS.BINS, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:939: WARNING: duplicate object description of toolbox_scs.hRIXS.USE_DARK, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:954: WARNING: duplicate object description of toolbox_scs.hRIXS.FIELDS, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1307: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1324: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:29: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1438: WARNING: duplicate object description of toolbox_scs.__all__, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1450: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:8: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1535: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1592: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1603: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1616: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1730: WARNING: duplicate object description of toolbox_scs.__all__, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1742: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1749: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1765: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1903: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1973: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:8: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:2004: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:2129: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:2176: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:2233: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:2236: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:2239: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:2258: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:2379: WARNING: duplicate object description of toolbox_scs.__all__, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/index.rst:1375: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/load/index.rst:4: WARNING: duplicate object description of toolbox_scs.load, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/load/index.rst:48: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/load/index.rst:65: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/load/index.rst:29: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/load/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/load/index.rst:148: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/load/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:85: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:8: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:126: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/index.rst:61: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/index.rst:8: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/index.rst:146: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/index.rst:203: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/index.rst:214: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/index.rst:227: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/laser_utils/index.rst:28: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/laser_utils/index.rst:41: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/misc/laser_utils/index.rst:55: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/XAS/index.rst:40: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/XAS/index.rst:7: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/XAS/index.rst:47: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/XAS/index.rst:63: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:192: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:262: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:8: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:293: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:418: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:465: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:522: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:525: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:528: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/boz/index.rst:547: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:86: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:7: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:93: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:109: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:247: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:317: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:8: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:348: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:473: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:520: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:577: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:580: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:583: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/index.rst:602: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/routines/knife_edge/index.rst:4: WARNING: duplicate object description of toolbox_scs.routines.knife_edge, other instance in autoapi/toolbox_scs/routines/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/test/test_dssc_cls/index.rst:90: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/test/test_dssc_cls/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/test/test_hrixs/index.rst:46: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/test/test_hrixs/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/test/test_misc/index.rst:82: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/test/test_misc/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/test/test_top_level/index.rst:76: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/test/test_top_level/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/test/test_utils/index.rst:73: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/toolbox_scs/test/test_utils/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/index.rst:130: CRITICAL: Title level inconsistent: Contribute ~~~~~~~~~~ WARNING: nbsphinx_widgets_path not given and ipywidgets module unavailable looking for now-outdated files... none found pickling environment... done checking consistency... /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Azimuthal integration of DSSC with pyFAI.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.a Correction determination.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part I.b Correction validation.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.1 Small data.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/BOZ analysis part II.2 Binning.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/DSSC fine delay with SCS toolbox.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Dask DSSC module binning.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/HRIXS.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/How to extract peaks from digitizer traces.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Loading_data_in_memory.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/PES_spectra_extraction.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/Transient reflectivity measurement.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/autoapi/index.rst: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/bunch_pattern_decoding.rst: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/dssc/DSSCBinner.rst: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/load.rst: WARNING: document isn't included in any toctree done processing SCSToolbox.tex... index howtos maintainers changelog autoapi/index autoapi/toolbox_scs/index autoapi/toolbox_scs/base/index autoapi/toolbox_scs/base/tests/index autoapi/toolbox_scs/base/tests/test_knife_edge/index autoapi/toolbox_scs/base/knife_edge/index autoapi/toolbox_scs/detectors/index autoapi/toolbox_scs/detectors/azimuthal_integrator/index autoapi/toolbox_scs/detectors/bam_detectors/index autoapi/toolbox_scs/detectors/digitizers/index autoapi/toolbox_scs/detectors/dssc/index autoapi/toolbox_scs/detectors/dssc_data/index autoapi/toolbox_scs/detectors/dssc_misc/index autoapi/toolbox_scs/detectors/dssc_plot/index autoapi/toolbox_scs/detectors/dssc_processing/index autoapi/toolbox_scs/detectors/fccd/index autoapi/toolbox_scs/detectors/hrixs/index autoapi/toolbox_scs/detectors/pes/index autoapi/toolbox_scs/detectors/xgm/index autoapi/toolbox_scs/misc/index autoapi/toolbox_scs/misc/bunch_pattern/index autoapi/toolbox_scs/misc/bunch_pattern_external/index autoapi/toolbox_scs/misc/laser_utils/index autoapi/toolbox_scs/misc/undulator/index autoapi/toolbox_scs/routines/index autoapi/toolbox_scs/routines/Reflectivity/index autoapi/toolbox_scs/routines/XAS/index autoapi/toolbox_scs/routines/boz/index autoapi/toolbox_scs/routines/knife_edge/index autoapi/toolbox_scs/test/index autoapi/toolbox_scs/test/test_dssc_cls/index autoapi/toolbox_scs/test/test_hrixs/index autoapi/toolbox_scs/test/test_misc/index autoapi/toolbox_scs/test/test_top_level/index autoapi/toolbox_scs/test/test_utils/index autoapi/toolbox_scs/util/index autoapi/toolbox_scs/util/exceptions/index autoapi/toolbox_scs/util/pkg/index autoapi/toolbox_scs/constants/index autoapi/toolbox_scs/load/index autoapi/toolbox_scs/mnemonics_machinery/index resolving references... done writing... done copying images... [100%] metadata.png copying TeX support files... copying TeX support files... done build succeeded, 173 warnings. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). [rtd-command-info] start-time: 2023-01-16T10:37:23.557359Z, end-time: 2023-01-16T10:37:23.616318Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2023-01-16T10:37:23.699457Z, end-time: 2023-01-16T10:37:28.339169Z, duration: 4, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=scs-toolbox -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="scs-toolbox" "SCSToolbox.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./SCSToolbox.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (./sphinxlatexgraphics.sty) (./sphinxpackageboxes.sty) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty)) (./sphinxlatexnumfig.sty (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty)) (./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file scs-toolbox.idx (./scs-toolbox.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] [1] [2] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [1] [2] Chapter 2. [3 <./metadata.png>] [4] Chapter 3. LaTeX Warning: Hyper reference `howtos:how-to-s' on page 5 undefined on input l ine 395. [5] [6] Chapter 4. (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) [7] [8] [9] [10] [11] [12] [13] [14] [15] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge.test_range_mask' on page 16 undefi ned on input line 1372. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge.test_prepare_arrays_nans' on page 16 undefined on input line 1372. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge.test_prepare_arrays_size' on page 16 undefined on input line 1372. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge.test_prepare_arrays_range' on page 16 undefined on input line 1372. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge.test_knife_edge_base' on page 16 u ndefined on input line 1372. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge._with_values' on page 16 undefined on input line 1372. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge.test_range_mask' on page 16 undefi ned on input line 1372. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge.test_prepare_arrays_nans' on page 16 undefined on input line 1372. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge.test_prepare_arrays_size' on page 16 undefined on input line 1372. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge.test_prepare_arrays_range' on page 16 undefined on input line 1372. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge.test_knife_edge_base' on page 16 u ndefined on input line 1372. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge._with_values' on page 16 undefined on input line 1372. [16] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/knife_edge/index:toolb ox_scs.base.knife_edge.knife_edge' on page 17 undefined on input line 1466. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/knife_edge/index:toolb ox_scs.base.knife_edge.knife_edge_base' on page 17 undefined on input line 1466 . LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/knife_edge/index:toolb ox_scs.base.knife_edge.knife_edge' on page 17 undefined on input line 1466. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/knife_edge/index:toolb ox_scs.base.knife_edge.knife_edge_base' on page 17 undefined on input line 1466 . [17] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/knife_edge/index:modul e-toolbox_scs.base.knife_edge' on page 18 undefined on input line 1605. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/index:toolbox_scs.base .knife_edge_base' on page 18 undefined on input line 1605. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/knife_edge/index:modul e-toolbox_scs.base.knife_edge' on page 18 undefined on input line 1605. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/index:toolbox_scs.base .knife_edge_base' on page 18 undefined on input line 1605. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/index:toolbox_scs.base .__all__' on page 18 undefined on input line 1627. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/index:toolbox_scs.base .__all__' on page 18 undefined on input line 1627. [18] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/azimuthal_integra tor/index:toolbox_scs.detectors.azimuthal_integrator.AzimuthalIntegrator' on pa ge 19 undefined on input line 1788. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/azimuthal_integra tor/index:toolbox_scs.detectors.azimuthal_integrator.AzimuthalIntegratorDSSC' o n page 19 undefined on input line 1788. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/azimuthal_integra tor/index:toolbox_scs.detectors.azimuthal_integrator.AzimuthalIntegrator' on pa ge 19 undefined on input line 1788. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/azimuthal_integra tor/index:toolbox_scs.detectors.azimuthal_integrator.AzimuthalIntegratorDSSC' o n page 19 undefined on input line 1788. [19] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/azimuthal_integra tor/index:toolbox_scs.detectors.azimuthal_integrator.AzimuthalIntegrator' on pa ge 20 undefined on input line 1886. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/bam_detectors/ind ex:toolbox_scs.detectors.bam_detectors.get_bam' on page 20 undefined on input l ine 1946. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/bam_detectors/ind ex:toolbox_scs.detectors.bam_detectors.get_bam_params' on page 20 undefined on input line 1946. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/bam_detectors/ind ex:toolbox_scs.detectors.bam_detectors.get_bam' on page 20 undefined on input l ine 1946. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/bam_detectors/ind ex:toolbox_scs.detectors.bam_detectors.get_bam_params' on page 20 undefined on input line 1946. [20] [21] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.get_peaks' on page 22 undefined on input line 2129. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.get_dig_avg_trace' on page 22 undefined on inp ut line 2129. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.check_peak_params' on page 22 undefined on inp ut line 2129. Underfull \hbox (badness 10000) in paragraph at lines 2129--2129 []|\T1/txtt/m/sl/10 check_peak_params\T1/qtm/m/n/10 (run, mnemonic[, raw_trace, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.get_tim_peaks' on page 22 undefined on input l ine 2129. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.get_laser_peaks' on page 22 undefined on input line 2129. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.get_digitizer_peaks' on page 22 undefined on i nput line 2129. Underfull \hbox (badness 10000) in paragraph at lines 2129--2129 []|\T1/txtt/m/sl/10 get_digitizer_peaks\T1/qtm/m/n/10 (run[, mnemon-ics, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.digitizer_signal_description' on page 22 undef ined on input line 2129. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.get_peaks' on page 22 undefined on input line 2129. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.get_dig_avg_trace' on page 22 undefined on inp ut line 2129. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.check_peak_params' on page 22 undefined on inp ut line 2129. Underfull \hbox (badness 10000) in paragraph at lines 2129--2129 []|\T1/txtt/m/sl/10 check_peak_params\T1/qtm/m/n/10 (run, mnemonic[, raw_trace, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.get_tim_peaks' on page 22 undefined on input l ine 2129. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.get_laser_peaks' on page 22 undefined on input line 2129. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.get_digitizer_peaks' on page 22 undefined on i nput line 2129. Underfull \hbox (badness 10000) in paragraph at lines 2129--2129 []|\T1/txtt/m/sl/10 get_digitizer_peaks\T1/qtm/m/n/10 (run[, mnemon-ics, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.digitizer_signal_description' on page 22 undef ined on input line 2129. [22] [23] [24] [25] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc/index:toolbo x_scs.detectors.dssc.DSSCBinner' on page 26 undefined on input line 2628. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc/index:toolbo x_scs.detectors.dssc.DSSCFormatter' on page 26 undefined on input line 2628. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc/index:toolbo x_scs.detectors.dssc.DSSCBinner' on page 26 undefined on input line 2628. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc/index:toolbo x_scs.detectors.dssc.DSSCFormatter' on page 26 undefined on input line 2628. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxValueError' on page 26 undefined on input line 26 70. [26] [27] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_data/index:t oolbox_scs.detectors.dssc_data.save_xarray' on page 28 undefined on input line 2992. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_data/index:t oolbox_scs.detectors.dssc_data.save_attributes_h5' on page 28 undefined on inpu t line 2992. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_data/index:t oolbox_scs.detectors.dssc_data.load_xarray' on page 28 undefined on input line 2992. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_data/index:t oolbox_scs.detectors.dssc_data.get_data_formatted' on page 28 undefined on inpu t line 2992. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_data/index:t oolbox_scs.detectors.dssc_data.save_xarray' on page 28 undefined on input line 2992. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_data/index:t oolbox_scs.detectors.dssc_data.save_attributes_h5' on page 28 undefined on inpu t line 2992. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_data/index:t oolbox_scs.detectors.dssc_data.load_xarray' on page 28 undefined on input line 2992. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_data/index:t oolbox_scs.detectors.dssc_data.get_data_formatted' on page 28 undefined on inpu t line 2992. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxFileError' on page 28 undefined on input line 302 2. [28] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_misc/index:t oolbox_scs.detectors.dssc_misc.load_dssc_info' on page 29 undefined on input li ne 3184. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_misc/index:t oolbox_scs.detectors.dssc_misc.create_dssc_bins' on page 29 undefined on input line 3184. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_misc/index:t oolbox_scs.detectors.dssc_misc.get_xgm_formatted' on page 29 undefined on input line 3184. Underfull \hbox (badness 10000) in paragraph at lines 3184--3184 []|\T1/txtt/m/sl/10 get_xgm_formatted\T1/qtm/m/n/10 (run_obj, xgm_name, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_misc/index:t oolbox_scs.detectors.dssc_misc.quickmask_DSSC_ASIC' on page 29 undefined on inp ut line 3184. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_misc/index:t oolbox_scs.detectors.dssc_misc.load_mask' on page 29 undefined on input line 31 84. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_misc/index:t oolbox_scs.detectors.dssc_misc.load_dssc_info' on page 29 undefined on input li ne 3184. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_misc/index:t oolbox_scs.detectors.dssc_misc.create_dssc_bins' on page 29 undefined on input line 3184. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_misc/index:t oolbox_scs.detectors.dssc_misc.get_xgm_formatted' on page 29 undefined on input line 3184. Underfull \hbox (badness 10000) in paragraph at lines 3184--3184 []|\T1/txtt/m/sl/10 get_xgm_formatted\T1/qtm/m/n/10 (run_obj, xgm_name, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_misc/index:t oolbox_scs.detectors.dssc_misc.quickmask_DSSC_ASIC' on page 29 undefined on inp ut line 3184. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_misc/index:t oolbox_scs.detectors.dssc_misc.load_mask' on page 29 undefined on input line 31 84. [29] [30] [31] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_plot/index:t oolbox_scs.detectors.dssc_plot.plot_xgm_threshold' on page 32 undefined on inpu t line 3435. Underfull \hbox (badness 5817) in paragraph at lines 3435--3435 []|\T1/txtt/m/sl/10 plot_xgm_threshold\T1/qtm/m/n/10 (xgm[, xgm_min, xgm_max, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_plot/index:t oolbox_scs.detectors.dssc_plot.plot_binner' on page 32 undefined on input line 3435. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_plot/index:t oolbox_scs.detectors.dssc_plot.plot_binner_hist' on page 32 undefined on input line 3435. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_plot/index:t oolbox_scs.detectors.dssc_plot.plot_hist_processed' on page 32 undefined on inp ut line 3435. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_plot/index:t oolbox_scs.detectors.dssc_plot.plot_xgm_threshold' on page 32 undefined on inpu t line 3435. Underfull \hbox (badness 5817) in paragraph at lines 3435--3435 []|\T1/txtt/m/sl/10 plot_xgm_threshold\T1/qtm/m/n/10 (xgm[, xgm_min, xgm_max, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_plot/index:t oolbox_scs.detectors.dssc_plot.plot_binner' on page 32 undefined on input line 3435. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_plot/index:t oolbox_scs.detectors.dssc_plot.plot_binner_hist' on page 32 undefined on input line 3435. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_plot/index:t oolbox_scs.detectors.dssc_plot.plot_hist_processed' on page 32 undefined on inp ut line 3435. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_processing/i ndex:toolbox_scs.detectors.dssc_processing.process_dssc_data' on page 32 undefi ned on input line 3507. Underfull \hbox (badness 10000) in paragraph at lines 3507--3507 []|\T1/txtt/m/sl/10 process_dssc_data\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_processing/i ndex:toolbox_scs.detectors.dssc_processing.process_dssc_data' on page 32 undefi ned on input line 3507. Underfull \hbox (badness 10000) in paragraph at lines 3507--3507 []|\T1/txtt/m/sl/10 process_dssc_data\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, [32] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/fccd/index:toolbo x_scs.detectors.fccd.FastCCD' on page 33 undefined on input line 3618. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/fccd/index:toolbo x_scs.detectors.fccd.FastCCD' on page 33 undefined on input line 3618. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/fccd/index:toolbo x_scs.detectors.fccd.process_one_module' on page 33 undefined on input line 364 0. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/fccd/index:toolbo x_scs.detectors.fccd.process_one_module' on page 33 undefined on input line 364 0. [33] [34] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/hrixs/index:toolb ox_scs.detectors.hrixs.hRIXS' on page 35 undefined on input line 3968. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/hrixs/index:toolb ox_scs.detectors.hrixs.hRIXS' on page 35 undefined on input line 3968. [35] [36] [37] [38] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/pes/index:toolbox _scs.detectors.pes.get_pes_tof' on page 39 undefined on input line 4578. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/pes/index:toolbox _scs.detectors.pes.get_pes_params' on page 39 undefined on input line 4578. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/pes/index:toolbox _scs.detectors.pes.get_pes_tof' on page 39 undefined on input line 4578. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/pes/index:toolbox _scs.detectors.pes.get_pes_params' on page 39 undefined on input line 4578. [39] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/xgm/index:toolbox _scs.detectors.xgm.get_xgm' on page 40 undefined on input line 4741. Underfull \hbox (badness 10000) in paragraph at lines 4741--4741 []|\T1/txtt/m/sl/10 get_xgm\T1/qtm/m/n/10 (run[, mnemon-ics, merge_with, in-dic es, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/xgm/index:toolbox _scs.detectors.xgm.calibrate_xgm' on page 40 undefined on input line 4741. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/xgm/index:toolbox _scs.detectors.xgm.get_xgm' on page 40 undefined on input line 4741. Underfull \hbox (badness 10000) in paragraph at lines 4741--4741 []|\T1/txtt/m/sl/10 get_xgm\T1/qtm/m/n/10 (run[, mnemon-ics, merge_with, in-dic es, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/xgm/index:toolbox _scs.detectors.xgm.calibrate_xgm' on page 40 undefined on input line 4741. [40] [41] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.AzimuthalIntegrator' on page 42 undefined on input line 4909. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.AzimuthalIntegratorDSSC' on page 42 undefined on input line 4909. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.DSSCBinner' on page 42 undefined on input line 4909. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.DSSCFormatter' on page 42 undefined on input line 4909. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.hRIXS' on page 42 undefined on input line 4909. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.AzimuthalIntegrator' on page 42 undefined on input line 4909. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.AzimuthalIntegratorDSSC' on page 42 undefined on input line 4909. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.DSSCBinner' on page 42 undefined on input line 4909. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.DSSCFormatter' on page 42 undefined on input line 4909. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.hRIXS' on page 42 undefined on input line 4909. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_bam' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_bam_params' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.check_peak_params' on page 42 undefined on input line 5085. Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|\T1/txtt/m/sl/10 check_peak_params\T1/qtm/m/n/10 (run, mnemonic[, raw_trace, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_digitizer_peaks' on page 42 undefined on input line 5085. Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|\T1/txtt/m/sl/10 get_digitizer_peaks\T1/qtm/m/n/10 (run[, mnemon-ics, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_laser_peaks' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_peaks' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_tim_peaks' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.digitizer_signal_description' on page 42 undefined on input line 508 5. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_dig_avg_trace' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_data_formatted' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.load_xarray' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.save_attributes_h5' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.save_xarray' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.create_dssc_bins' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_xgm_formatted' on page 42 undefined on input line 5085. Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|\T1/txtt/m/sl/10 get_xgm_formatted\T1/qtm/m/n/10 (run_obj, xgm_name, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.load_dssc_info' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.load_mask' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.quickmask_DSSC_ASIC' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.process_dssc_data' on page 42 undefined on input line 5085. Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|\T1/txtt/m/sl/10 process_dssc_data\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_pes_params' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_pes_tof' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.calibrate_xgm' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_xgm' on page 42 undefined on input line 5085. Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|\T1/txtt/m/sl/10 get_xgm\T1/qtm/m/n/10 (run[, mnemon-ics, merge_with, in-dic es, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_bam' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_bam_params' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.check_peak_params' on page 42 undefined on input line 5085. Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|\T1/txtt/m/sl/10 check_peak_params\T1/qtm/m/n/10 (run, mnemonic[, raw_trace, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_digitizer_peaks' on page 42 undefined on input line 5085. Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|\T1/txtt/m/sl/10 get_digitizer_peaks\T1/qtm/m/n/10 (run[, mnemon-ics, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_laser_peaks' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_peaks' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_tim_peaks' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.digitizer_signal_description' on page 42 undefined on input line 508 5. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_dig_avg_trace' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_data_formatted' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.load_xarray' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.save_attributes_h5' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.save_xarray' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.create_dssc_bins' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_xgm_formatted' on page 42 undefined on input line 5085. Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|\T1/txtt/m/sl/10 get_xgm_formatted\T1/qtm/m/n/10 (run_obj, xgm_name, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.load_dssc_info' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.load_mask' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.quickmask_DSSC_ASIC' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.process_dssc_data' on page 42 undefined on input line 5085. Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|\T1/txtt/m/sl/10 process_dssc_data\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_pes_params' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_pes_tof' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.calibrate_xgm' on page 42 undefined on input line 5085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_xgm' on page 42 undefined on input line 5085. Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|\T1/txtt/m/sl/10 get_xgm\T1/qtm/m/n/10 (run[, mnemon-ics, merge_with, in-dic es, [42] [43] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.__all__' on page 44 undefined on input line 5107. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.__all__' on page 44 undefined on input line 5107. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.AzimuthalIntegrator' on page 44 undefined on input line 5205. [44] [45] [46] [47] [48] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxValueError' on page 49 undefined on input line 58 00. [49] [50] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxFileError' on page 51 undefined on input line 619 6. [51] [52] [53] [54] [55] [56] [57] [58] [59] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern/index:to olbox_scs.misc.bunch_pattern.npulses_has_changed' on page 60 undefined on input line 7347. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern/index:to olbox_scs.misc.bunch_pattern.get_sase_pId' on page 60 undefined on input line 7 347. Underfull \hbox (badness 10000) in paragraph at lines 7347--7347 []|\T1/txtt/m/sl/10 get_sase_pId\T1/qtm/m/n/10 (run[, loc, run_mnemonics, bpt, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern/index:to olbox_scs.misc.bunch_pattern.extractBunchPattern' on page 60 undefined on input line 7347. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern/index:to olbox_scs.misc.bunch_pattern.pulsePatternInfo' on page 60 undefined on input li ne 7347. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern/index:to olbox_scs.misc.bunch_pattern.repRate' on page 60 undefined on input line 7347. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern/index:to olbox_scs.misc.bunch_pattern.npulses_has_changed' on page 60 undefined on input line 7347. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern/index:to olbox_scs.misc.bunch_pattern.get_sase_pId' on page 60 undefined on input line 7 347. Underfull \hbox (badness 10000) in paragraph at lines 7347--7347 []|\T1/txtt/m/sl/10 get_sase_pId\T1/qtm/m/n/10 (run[, loc, run_mnemonics, bpt, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern/index:to olbox_scs.misc.bunch_pattern.extractBunchPattern' on page 60 undefined on input line 7347. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern/index:to olbox_scs.misc.bunch_pattern.pulsePatternInfo' on page 60 undefined on input li ne 7347. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern/index:to olbox_scs.misc.bunch_pattern.repRate' on page 60 undefined on input line 7347. [60] [61] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern_external /index:toolbox_scs.misc.bunch_pattern_external.is_pulse_at' on page 62 undefine d on input line 7601. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern_external /index:toolbox_scs.misc.bunch_pattern_external.is_sase_3' on page 62 undefined on input line 7601. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern_external /index:toolbox_scs.misc.bunch_pattern_external.is_sase_1' on page 62 undefined on input line 7601. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern_external /index:toolbox_scs.misc.bunch_pattern_external.is_ppl' on page 62 undefined on input line 7601. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern_external /index:toolbox_scs.misc.bunch_pattern_external.is_pulse_at' on page 62 undefine d on input line 7601. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern_external /index:toolbox_scs.misc.bunch_pattern_external.is_sase_3' on page 62 undefined on input line 7601. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern_external /index:toolbox_scs.misc.bunch_pattern_external.is_sase_1' on page 62 undefined on input line 7601. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern_external /index:toolbox_scs.misc.bunch_pattern_external.is_ppl' on page 62 undefined on input line 7601. [62] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/laser_utils/index:tool box_scs.misc.laser_utils.positionToDelay' on page 63 undefined on input line 77 70. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/laser_utils/index:tool box_scs.misc.laser_utils.delayToPosition' on page 63 undefined on input line 77 70. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/laser_utils/index:tool box_scs.misc.laser_utils.degToRelPower' on page 63 undefined on input line 7770 . LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/laser_utils/index:tool box_scs.misc.laser_utils.fluenceCalibration' on page 63 undefined on input line 7770. Underfull \hbox (badness 10000) in paragraph at lines 7770--7770 []|\T1/txtt/m/sl/10 fluenceCalibration\T1/qtm/m/n/10 (hwp, power_mW, npulses, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/laser_utils/index:tool box_scs.misc.laser_utils.align_ol_to_fel_pId' on page 63 undefined on input lin e 7770. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/laser_utils/index:tool box_scs.misc.laser_utils.positionToDelay' on page 63 undefined on input line 77 70. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/laser_utils/index:tool box_scs.misc.laser_utils.delayToPosition' on page 63 undefined on input line 77 70. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/laser_utils/index:tool box_scs.misc.laser_utils.degToRelPower' on page 63 undefined on input line 7770 . LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/laser_utils/index:tool box_scs.misc.laser_utils.fluenceCalibration' on page 63 undefined on input line 7770. Underfull \hbox (badness 10000) in paragraph at lines 7770--7770 []|\T1/txtt/m/sl/10 fluenceCalibration\T1/qtm/m/n/10 (hwp, power_mW, npulses, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/laser_utils/index:tool box_scs.misc.laser_utils.align_ol_to_fel_pId' on page 63 undefined on input lin e 7770. [63] [64] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/undulator/index:toolbo x_scs.misc.undulator.get_undulator_config' on page 65 undefined on input line 8 013. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/undulator/index:toolbo x_scs.misc.undulator.get_undulator_config' on page 65 undefined on input line 8 013. [65] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .extractBunchPattern' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .get_sase_pId' on page 66 undefined on input line 8181. Underfull \hbox (badness 10000) in paragraph at lines 8181--8181 []|\T1/txtt/m/sl/10 get_sase_pId\T1/qtm/m/n/10 (run[, loc, run_mnemonics, bpt, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .npulses_has_changed' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .pulsePatternInfo' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .repRate' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .is_sase_3' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .is_sase_1' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .is_ppl' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .is_pulse_at' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .degToRelPower' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .positionToDelay' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .delayToPosition' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .fluenceCalibration' on page 66 undefined on input line 8181. Underfull \hbox (badness 10000) in paragraph at lines 8181--8181 []|\T1/txtt/m/sl/10 fluenceCalibration\T1/qtm/m/n/10 (hwp, power_mW, npulses, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .align_ol_to_fel_pId' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .get_undulator_config' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .extractBunchPattern' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .get_sase_pId' on page 66 undefined on input line 8181. Underfull \hbox (badness 10000) in paragraph at lines 8181--8181 []|\T1/txtt/m/sl/10 get_sase_pId\T1/qtm/m/n/10 (run[, loc, run_mnemonics, bpt, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .npulses_has_changed' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .pulsePatternInfo' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .repRate' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .is_sase_3' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .is_sase_1' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .is_ppl' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .is_pulse_at' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .degToRelPower' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .positionToDelay' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .delayToPosition' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .fluenceCalibration' on page 66 undefined on input line 8181. Underfull \hbox (badness 10000) in paragraph at lines 8181--8181 []|\T1/txtt/m/sl/10 fluenceCalibration\T1/qtm/m/n/10 (hwp, power_mW, npulses, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .align_ol_to_fel_pId' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .get_undulator_config' on page 66 undefined on input line 8181. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .__all__' on page 66 undefined on input line 8203. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .__all__' on page 66 undefined on input line 8203. [66] [67] [68] [69] [70] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/Reflectivity/index :toolbox_scs.routines.Reflectivity.reflectivity' on page 71 undefined on input line 8823. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/Reflectivity/index :toolbox_scs.routines.Reflectivity.reflectivity' on page 71 undefined on input line 8823. [71] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/XAS/index:toolbox_ scs.routines.XAS.xas' on page 72 undefined on input line 8970. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/XAS/index:toolbox_ scs.routines.XAS.xasxmcd' on page 72 undefined on input line 8970. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/XAS/index:toolbox_ scs.routines.XAS.xas' on page 72 undefined on input line 8970. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/XAS/index:toolbox_ scs.routines.XAS.xasxmcd' on page 72 undefined on input line 8970. [72] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.parameters' on page 73 undefined on input line 9081. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.parameters' on page 73 undefined on input line 9081. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.get_roi_pixel_pos' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.bad_pixel_map' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_dark' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.histogram_module' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_histogram' on page 73 undefined on input line 9292. Underfull \hbox (badness 10000) in paragraph at lines 9292--9292 []|\T1/txtt/m/sl/10 inspect_histogram\T1/qtm/m/n/10 (arr[, arr_dark, mask, ex- LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.find_rois' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.find_rois_from_params' on page 73 undefined on input line 9292 . LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_rois' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.compute_flat_field_correction' on page 73 undefined on input l ine 9292. Underfull \hbox (badness 10000) in paragraph at lines 9292--9292 []|\T1/txtt/m/sl/10 compute_flat_field_correction\T1/qtm/m/n/10 (rois, params[, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_flat_field_domain' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_plane_fitting' on page 73 undefined on input line 9292 . LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.plane_fitting_domain' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.plane_fitting' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.ff_refine_crit' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.ff_refine_fit' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.nl_domain' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.nl_lut' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.nl_crit' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.nl_fit' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_nl_fit' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.snr' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_Fnl' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_correction' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.load_dssc_module' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.average_module' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.process_module' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.process' on page 73 undefined on input line 9292. Underfull \hbox (badness 7362) in paragraph at lines 9292--9292 []|\T1/txtt/m/sl/10 process\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, ma sk, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_saturation' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.get_roi_pixel_pos' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.bad_pixel_map' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_dark' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.histogram_module' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_histogram' on page 73 undefined on input line 9292. Underfull \hbox (badness 10000) in paragraph at lines 9292--9292 []|\T1/txtt/m/sl/10 inspect_histogram\T1/qtm/m/n/10 (arr[, arr_dark, mask, ex- LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.find_rois' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.find_rois_from_params' on page 73 undefined on input line 9292 . LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_rois' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.compute_flat_field_correction' on page 73 undefined on input l ine 9292. Underfull \hbox (badness 10000) in paragraph at lines 9292--9292 []|\T1/txtt/m/sl/10 compute_flat_field_correction\T1/qtm/m/n/10 (rois, params[, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_flat_field_domain' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_plane_fitting' on page 73 undefined on input line 9292 . LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.plane_fitting_domain' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.plane_fitting' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.ff_refine_crit' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.ff_refine_fit' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.nl_domain' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.nl_lut' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.nl_crit' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.nl_fit' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_nl_fit' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.snr' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_Fnl' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_correction' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.load_dssc_module' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.average_module' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.process_module' on page 73 undefined on input line 9292. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.process' on page 73 undefined on input line 9292. Underfull \hbox (badness 7362) in paragraph at lines 9292--9292 []|\T1/txtt/m/sl/10 process\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, ma sk, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_saturation' on page 73 undefined on input line 9292. [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/knife_edge/index:t oolbox_scs.routines.knife_edge.knife_edge' on page 84 undefined on input line 1 0483. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/knife_edge/index:t oolbox_scs.routines.knife_edge.knife_edge' on page 84 undefined on input line 1 0483. [84] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.parameters' on page 85 undefined on input line 10573. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.parameters' on page 85 undefined on input line 10573. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.xas' on page 85 undefined on input line 10605. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.xasxmcd' on page 85 undefined on input line 10612. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.get_roi_pixel_pos' on page 85 undefined on input line 10619. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.bad_pixel_map' on page 85 undefined on input line 10626. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.inspect_dark' on page 85 undefined on input line 10633. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.histogram_module' on page 85 undefined on input line 10640. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.inspect_histogram' on page 85 undefined on input line 10647. Underfull \hbox (badness 10000) in paragraph at lines 10646--10648 []|\T1/txtt/m/sl/10 inspect_histogram\T1/qtm/m/n/10 (arr[, arr_dark, mask, ex- LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.find_rois' on page 85 undefined on input line 10654. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.find_rois_from_params' on page 85 undefined on input line 10661. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.inspect_rois' on page 85 undefined on input line 10668. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.compute_flat_field_correction' on page 85 undefined on input line 1067 5. Underfull \hbox (badness 10000) in paragraph at lines 10674--10676 []|\T1/txtt/m/sl/10 compute_flat_field_correction\T1/qtm/m/n/10 (rois, params[, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.inspect_flat_field_domain' on page 85 undefined on input line 10682. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.inspect_plane_fitting' on page 85 undefined on input line 10689. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.plane_fitting_domain' on page 85 undefined on input line 10696. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.plane_fitting' on page 85 undefined on input line 10703. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.ff_refine_crit' on page 85 undefined on input line 10710. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.ff_refine_fit' on page 85 undefined on input line 10717. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.nl_domain' on page 85 undefined on input line 10724. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.nl_lut' on page 85 undefined on input line 10731. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.nl_crit' on page 85 undefined on input line 10738. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.nl_fit' on page 85 undefined on input line 10745. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.inspect_nl_fit' on page 85 undefined on input line 10752. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.snr' on page 85 undefined on input line 10759. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.inspect_Fnl' on page 85 undefined on input line 10766. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.inspect_correction' on page 85 undefined on input line 10773. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.load_dssc_module' on page 85 undefined on input line 10780. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.average_module' on page 85 undefined on input line 10787. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.process_module' on page 85 undefined on input line 10794. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.process' on page 85 undefined on input line 10801. Underfull \hbox (badness 7362) in paragraph at lines 10800--10802 []|\T1/txtt/m/sl/10 process\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, ma sk, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.inspect_saturation' on page 85 undefined on input line 10808. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.reflectivity' on page 85 undefined on input line 10815. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/knife_edge/index:m odule-toolbox_scs.routines.knife_edge' on page 85 undefined on input line 10822 . Package longtable Warning: Column widths have changed (longtable) in table 1 on input line 10828. [85] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.__all__' on page 86 undefined on input line 10851. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.__all__' on page 86 undefined on input line 10851. [86] [87] [88] [89] [90] [91] [92] [93] [94] [95] [96] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.TestDSSC' on page 97 undefined on input line 12286 . LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.TestDSSC' on page 97 undefined on input line 12286 . LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.setup_tmp_dir' on page 97 undefined on input line 12336. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.cleanup_tmp_dir' on page 97 undefined on input lin e 12336. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.list_suites' on page 97 undefined on input line 12 336. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.suite' on page 97 undefined on input line 12336. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.main' on page 97 undefined on input line 12336. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.setup_tmp_dir' on page 97 undefined on input line 12336. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.cleanup_tmp_dir' on page 97 undefined on input lin e 12336. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.list_suites' on page 97 undefined on input line 12 336. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.suite' on page 97 undefined on input line 12336. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.main' on page 97 undefined on input line 12336. [97] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.log_root' on page 98 undefined on input line 12379 . LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.suites' on page 98 undefined on input line 12379. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls._temp_dirs' on page 98 undefined on input line 123 79. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.parser' on page 98 undefined on input line 12379. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.log_root' on page 98 undefined on input line 12379 . LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.suites' on page 98 undefined on input line 12379. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls._temp_dirs' on page 98 undefined on input line 123 79. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.parser' on page 98 undefined on input line 12379. [98] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_hrixs/index:toolb ox_scs.test.test_hrixs.TestHRIXS' on page 99 undefined on input line 12615. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_hrixs/index:toolb ox_scs.test.test_hrixs.TestHRIXS' on page 99 undefined on input line 12615. [99] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.TestDataAccess' on page 100 undefined on input line 12737. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.TestDataAccess' on page 100 undefined on input line 12737. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.list_suites' on page 100 undefined on input line 12773. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.suite' on page 100 undefined on input line 12773. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.start_tests' on page 100 undefined on input line 12773. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.list_suites' on page 100 undefined on input line 12773. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.suite' on page 100 undefined on input line 12773. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.start_tests' on page 100 undefined on input line 12773. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.proposalNB' on page 100 undefined on input line 12816. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.runNB' on page 100 undefined on input line 12816. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.suites' on page 100 undefined on input line 12816. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.parser' on page 100 undefined on input line 12816. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.proposalNB' on page 100 undefined on input line 12816. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.runNB' on page 100 undefined on input line 12816. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.suites' on page 100 undefined on input line 12816. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.parser' on page 100 undefined on input line 12816. [100] [101] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.TestToolbox' on page 102 undefined on input line 13067. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.TestToolbox' on page 102 undefined on input line 13067. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.list_suites' on page 102 undefined on input line 13103. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.suite' on page 102 undefined on input line 13103 . LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.main' on page 102 undefined on input line 13103. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.list_suites' on page 102 undefined on input line 13103. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.suite' on page 102 undefined on input line 13103 . LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.main' on page 102 undefined on input line 13103. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.log_root' on page 102 undefined on input line 13 139. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.suites' on page 102 undefined on input line 1313 9. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.parser' on page 102 undefined on input line 1313 9. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.log_root' on page 102 undefined on input line 13 139. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.suites' on page 102 undefined on input line 1313 9. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.parser' on page 102 undefined on input line 1313 9. [102] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.TestDataAccess' on page 103 undefined on input line 1338 1. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.TestDataAccess' on page 103 undefined on input line 1338 1. [103] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.list_suites' on page 104 undefined on input line 13417. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.suite' on page 104 undefined on input line 13417. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.main' on page 104 undefined on input line 13417. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.list_suites' on page 104 undefined on input line 13417. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.suite' on page 104 undefined on input line 13417. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.main' on page 104 undefined on input line 13417. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.suites' on page 104 undefined on input line 13446. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.parser' on page 104 undefined on input line 13446. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.suites' on page 104 undefined on input line 13446. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.parser' on page 104 undefined on input line 13446. [104] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxError' on page 105 undefined on input line 13673. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxError' on page 105 undefined on input line 13688. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxError' on page 105 undefined on input line 13703. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxError' on page 105 undefined on input line 13718. [105] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/pkg/index:toolbox_scs. util.pkg.get_version' on page 106 undefined on input line 13752. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/pkg/index:toolbox_scs. util.pkg.get_version' on page 106 undefined on input line 13752. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .load' on page 106 undefined on input line 13863. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .run_by_path' on page 106 undefined on input line 13863. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .find_run_path' on page 106 undefined on input line 13863. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .open_run' on page 106 undefined on input line 13863. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .get_array' on page 106 undefined on input line 13863. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .load_run_values' on page 106 undefined on input line 13863. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .concatenateRuns' on page 106 undefined on input line 13863. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .load' on page 106 undefined on input line 13863. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .run_by_path' on page 106 undefined on input line 13863. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .find_run_path' on page 106 undefined on input line 13863. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .open_run' on page 106 undefined on input line 13863. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .get_array' on page 106 undefined on input line 13863. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .load_run_values' on page 106 undefined on input line 13863. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .concatenateRuns' on page 106 undefined on input line 13863. [106] Underfull \hbox (badness 5970) in paragraph at lines 13966--13969 []\T1/txtt/bx/n/10 extract_bam \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 bool\T1/qtm/m/n /10 ) ^^U If True, ex-tracts the val-ues from BAM vari-ables (e.g. [107] [108] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxValueError' on page 109 undefined on input line 1 4214. [109] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/mnemonics_machinery/index:t oolbox_scs.mnemonics_machinery.mnemonics_for_run' on page 110 undefined on inpu t line 14335. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/mnemonics_machinery/index:t oolbox_scs.mnemonics_machinery.mnemonics_for_run' on page 110 undefined on inpu t line 14335. [110] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.Azimuthal Integrator' on page 111 undefined on input line 14438. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.Azimuthal IntegratorDSSC' on page 111 undefined on input line 14438. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.DSSCBinne r' on page 111 undefined on input line 14438. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.DSSCForma tter' on page 111 undefined on input line 14438. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.hRIXS' on page 111 undefined on input line 14438. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.parameter s' on page 111 undefined on input line 14438. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.Azimuthal Integrator' on page 111 undefined on input line 14438. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.Azimuthal IntegratorDSSC' on page 111 undefined on input line 14438. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.DSSCBinne r' on page 111 undefined on input line 14438. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.DSSCForma tter' on page 111 undefined on input line 14438. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.hRIXS' on page 111 undefined on input line 14438. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.parameter s' on page 111 undefined on input line 14438. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_bam' on page 111 undefined on input line 14470. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_bam_p arams' on page 111 undefined on input line 14477. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.check_pea k_params' on page 111 undefined on input line 14484. Underfull \hbox (badness 10000) in paragraph at lines 14483--14485 []|\T1/txtt/m/sl/10 check_peak_params\T1/qtm/m/n/10 (run, mnemonic[, raw_trace, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_digit izer_peaks' on page 111 undefined on input line 14491. Underfull \hbox (badness 10000) in paragraph at lines 14490--14492 []|\T1/txtt/m/sl/10 get_digitizer_peaks\T1/qtm/m/n/10 (run[, mnemon-ics, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_laser _peaks' on page 111 undefined on input line 14498. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_peaks ' on page 111 undefined on input line 14505. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_tim_p eaks' on page 111 undefined on input line 14512. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.digitizer _signal_description' on page 111 undefined on input line 14519. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_dig_a vg_trace' on page 111 undefined on input line 14526. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_data_ formatted' on page 111 undefined on input line 14533. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.load_xarr ay' on page 111 undefined on input line 14540. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.save_attr ibutes_h5' on page 111 undefined on input line 14547. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.save_xarr ay' on page 111 undefined on input line 14554. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.create_ds sc_bins' on page 111 undefined on input line 14561. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_xgm_f ormatted' on page 111 undefined on input line 14568. Underfull \hbox (badness 10000) in paragraph at lines 14567--14569 []|\T1/txtt/m/sl/10 get_xgm_formatted\T1/qtm/m/n/10 (run_obj, xgm_name, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.load_dssc _info' on page 111 undefined on input line 14575. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.load_mask ' on page 111 undefined on input line 14582. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.quickmask _DSSC_ASIC' on page 111 undefined on input line 14589. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.process_d ssc_data' on page 111 undefined on input line 14596. Underfull \hbox (badness 10000) in paragraph at lines 14595--14597 []|\T1/txtt/m/sl/10 process_dssc_data\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_pes_p arams' on page 111 undefined on input line 14603. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_pes_t of' on page 111 undefined on input line 14610. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.calibrate _xgm' on page 111 undefined on input line 14617. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_xgm' on page 111 undefined on input line 14624. Underfull \hbox (badness 10000) in paragraph at lines 14623--14625 []|\T1/txtt/m/sl/10 get_xgm\T1/qtm/m/n/10 (run[, mnemon-ics, merge_with, in-dic es, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.concatena teRuns' on page 111 undefined on input line 14631. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.find_run_ path' on page 111 undefined on input line 14638. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_array ' on page 111 undefined on input line 14645. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:module-toolbox_s cs.load' on page 111 undefined on input line 14652. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.open_run' on page 111 undefined on input line 14659. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.run_by_pa th' on page 111 undefined on input line 14666. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.load_run_ values' on page 111 undefined on input line 14673. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.extractBu nchPattern' on page 111 undefined on input line 14680. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_sase_ pId' on page 111 undefined on input line 14687. Underfull \hbox (badness 10000) in paragraph at lines 14686--14688 []|\T1/txtt/m/sl/10 get_sase_pId\T1/qtm/m/n/10 (run[, loc, run_mnemonics, bpt, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.npulses_h as_changed' on page 111 undefined on input line 14694. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.pulsePatt ernInfo' on page 111 undefined on input line 14701. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.repRate' on page 111 undefined on input line 14708. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.is_sase_3 ' on page 111 undefined on input line 14715. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.is_sase_1 ' on page 111 undefined on input line 14722. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.is_ppl' o n page 111 undefined on input line 14729. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.is_pulse_ at' on page 111 undefined on input line 14736. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.degToRelP ower' on page 111 undefined on input line 14743. [111] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.positionT oDelay' on page 112 undefined on input line 14750. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.delayToPo sition' on page 112 undefined on input line 14757. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.fluenceCa libration' on page 112 undefined on input line 14764. Underfull \hbox (badness 10000) in paragraph at lines 14763--14765 []|\T1/txtt/m/sl/10 fluenceCalibration\T1/qtm/m/n/10 (hwp, power_mW, npulses, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.align_ol_ to_fel_pId' on page 112 undefined on input line 14771. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_undul ator_config' on page 112 undefined on input line 14778. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.mnemonics _for_run' on page 112 undefined on input line 14785. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.xas' on p age 112 undefined on input line 14792. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.xasxmcd' on page 112 undefined on input line 14799. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_roi_p ixel_pos' on page 112 undefined on input line 14806. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.bad_pixel _map' on page 112 undefined on input line 14813. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.inspect_d ark' on page 112 undefined on input line 14820. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.histogram _module' on page 112 undefined on input line 14827. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.inspect_h istogram' on page 112 undefined on input line 14834. Underfull \hbox (badness 10000) in paragraph at lines 14833--14835 []|\T1/txtt/m/sl/10 inspect_histogram\T1/qtm/m/n/10 (arr[, arr_dark, mask, ex- LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.find_rois ' on page 112 undefined on input line 14841. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.find_rois _from_params' on page 112 undefined on input line 14848. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.inspect_r ois' on page 112 undefined on input line 14855. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.compute_f lat_field_correction' on page 112 undefined on input line 14862. Underfull \hbox (badness 10000) in paragraph at lines 14861--14863 []|\T1/txtt/m/sl/10 compute_flat_field_correction\T1/qtm/m/n/10 (rois, params[, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.inspect_f lat_field_domain' on page 112 undefined on input line 14869. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.inspect_p lane_fitting' on page 112 undefined on input line 14876. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.plane_fit ting_domain' on page 112 undefined on input line 14883. [112] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.plane_fit ting' on page 113 undefined on input line 14890. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.ff_refine _crit' on page 113 undefined on input line 14897. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.ff_refine _fit' on page 113 undefined on input line 14904. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.nl_domain ' on page 113 undefined on input line 14911. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.nl_lut' o n page 113 undefined on input line 14918. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.nl_crit' on page 113 undefined on input line 14925. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.nl_fit' o n page 113 undefined on input line 14932. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.inspect_n l_fit' on page 113 undefined on input line 14939. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.snr' on p age 113 undefined on input line 14946. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.inspect_F nl' on page 113 undefined on input line 14953. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.inspect_c orrection' on page 113 undefined on input line 14960. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.load_dssc _module' on page 113 undefined on input line 14967. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.average_m odule' on page 113 undefined on input line 14974. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.process_m odule' on page 113 undefined on input line 14981. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.process' on page 113 undefined on input line 14988. Underfull \hbox (badness 7362) in paragraph at lines 14987--14989 []|\T1/txtt/m/sl/10 process\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, ma sk, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.inspect_s aturation' on page 113 undefined on input line 14995. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.reflectiv ity' on page 113 undefined on input line 15002. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.knife_edg e' on page 113 undefined on input line 15009. Package longtable Warning: Column widths have changed (longtable) in table 2 on input line 15015. [113] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.mnemonics ' on page 114 undefined on input line 15066. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:id45' on page 114 und efined on input line 15066. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:id45' on page 114 und efined on input line 15066. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:id45' on page 114 und efined on input line 15066. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:id45' on page 114 und efined on input line 15066. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.mnemonics ' on page 114 undefined on input line 15066. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:id45' on page 114 und efined on input line 15066. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:id45' on page 114 und efined on input line 15066. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:id45' on page 114 und efined on input line 15066. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:id45' on page 114 und efined on input line 15066. [114] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.Azimuthal Integrator' on page 115 undefined on input line 15182. [115] [116] [117] [118] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxValueError' on page 119 undefined on input line 1 5777. [119] [120] [121] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxFileError' on page 122 undefined on input line 16 173. [122] [123] [124] [125] [126] [127] [128] [129] [130] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxValueError' on page 131 undefined on input line 1 7364. [131] Underfull \hbox (badness 5970) in paragraph at lines 17478--17481 []\T1/txtt/bx/n/10 extract_bam \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 bool\T1/qtm/m/n /10 ) ^^U If True, ex-tracts the val-ues from BAM vari-ables (e.g. [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] Chapter 5. [151] [152] LaTeX Warning: Reference `autoapi/toolbox_scs/index:module-toolbox_scs' on page 153 undefined on input line 19724. LaTeX Warning: Reference `autoapi/toolbox_scs/base/index:module-toolbox_scs.bas e' on page 153 undefined on input line 19725. LaTeX Warning: Reference `autoapi/toolbox_scs/base/knife_edge/index:module-tool box_scs.base.knife_edge' on page 153 undefined on input line 19726. LaTeX Warning: Reference `autoapi/toolbox_scs/base/tests/index:module-toolbox_s cs.base.tests' on page 153 undefined on input line 19727. LaTeX Warning: Reference `autoapi/toolbox_scs/base/tests/test_knife_edge/index: module-toolbox_scs.base.tests.test_knife_edge' on page 153 undefined on input l ine 19728. LaTeX Warning: Reference `autoapi/toolbox_scs/constants/index:module-toolbox_sc s.constants' on page 153 undefined on input line 19729. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/index:module-toolbox_sc s.detectors' on page 153 undefined on input line 19730. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/azimuthal_integrator/in dex:module-toolbox_scs.detectors.azimuthal_integrator' on page 153 undefined on input line 19731. Underfull \hbox (badness 10000) in paragraph at lines 19731--19732 []\T1/txtt/m/n/10 toolbox_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 , LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/bam_detectors/index:mod ule-toolbox_scs.detectors.bam_detectors' on page 153 undefined on input line 19 732. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/digitizers/index:module -toolbox_scs.detectors.digitizers' on page 153 undefined on input line 19733. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/dssc/index:module-toolb ox_scs.detectors.dssc' on page 153 undefined on input line 19734. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/dssc_data/index:module- toolbox_scs.detectors.dssc_data' on page 153 undefined on input line 19735. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/dssc_misc/index:module- toolbox_scs.detectors.dssc_misc' on page 153 undefined on input line 19736. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/dssc_plot/index:module- toolbox_scs.detectors.dssc_plot' on page 153 undefined on input line 19737. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/dssc_processing/index:m odule-toolbox_scs.detectors.dssc_processing' on page 153 undefined on input lin e 19738. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/fccd/index:module-toolb ox_scs.detectors.fccd' on page 153 undefined on input line 19739. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/hrixs/index:module-tool box_scs.detectors.hrixs' on page 153 undefined on input line 19740. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/pes/index:module-toolbo x_scs.detectors.pes' on page 153 undefined on input line 19741. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/xgm/index:module-toolbo x_scs.detectors.xgm' on page 153 undefined on input line 19742. LaTeX Warning: Reference `autoapi/toolbox_scs/load/index:module-toolbox_scs.loa d' on page 153 undefined on input line 19743. LaTeX Warning: Reference `autoapi/toolbox_scs/misc/index:module-toolbox_scs.mis c' on page 153 undefined on input line 19744. LaTeX Warning: Reference `autoapi/toolbox_scs/misc/bunch_pattern/index:module-t oolbox_scs.misc.bunch_pattern' on page 153 undefined on input line 19745. LaTeX Warning: Reference `autoapi/toolbox_scs/misc/bunch_pattern_external/index :module-toolbox_scs.misc.bunch_pattern_external' on page 153 undefined on input line 19746. LaTeX Warning: Reference `autoapi/toolbox_scs/misc/laser_utils/index:module-too lbox_scs.misc.laser_utils' on page 153 undefined on input line 19747. LaTeX Warning: Reference `autoapi/toolbox_scs/misc/undulator/index:module-toolb ox_scs.misc.undulator' on page 153 undefined on input line 19748. LaTeX Warning: Reference `autoapi/toolbox_scs/mnemonics_machinery/index:module- toolbox_scs.mnemonics_machinery' on page 153 undefined on input line 19749. LaTeX Warning: Reference `autoapi/toolbox_scs/routines/index:module-toolbox_scs .routines' on page 153 undefined on input line 19750. LaTeX Warning: Reference `autoapi/toolbox_scs/routines/boz/index:module-toolbox _scs.routines.boz' on page 153 undefined on input line 19751. LaTeX Warning: Reference `autoapi/toolbox_scs/routines/knife_edge/index:module- toolbox_scs.routines.knife_edge' on page 153 undefined on input line 19752. LaTeX Warning: Reference `autoapi/toolbox_scs/routines/Reflectivity/index:modul e-toolbox_scs.routines.Reflectivity' on page 153 undefined on input line 19753. LaTeX Warning: Reference `autoapi/toolbox_scs/routines/XAS/index:module-toolbox _scs.routines.XAS' on page 153 undefined on input line 19754. LaTeX Warning: Reference `autoapi/toolbox_scs/test/index:module-toolbox_scs.tes t' on page 153 undefined on input line 19755. LaTeX Warning: Reference `autoapi/toolbox_scs/test/test_dssc_cls/index:module-t oolbox_scs.test.test_dssc_cls' on page 153 undefined on input line 19756. LaTeX Warning: Reference `autoapi/toolbox_scs/test/test_hrixs/index:module-tool box_scs.test.test_hrixs' on page 153 undefined on input line 19757. LaTeX Warning: Reference `autoapi/toolbox_scs/test/test_misc/index:module-toolb ox_scs.test.test_misc' on page 153 undefined on input line 19758. LaTeX Warning: Reference `autoapi/toolbox_scs/test/test_top_level/index:module- toolbox_scs.test.test_top_level' on page 153 undefined on input line 19759. LaTeX Warning: Reference `autoapi/toolbox_scs/test/test_utils/index:module-tool box_scs.test.test_utils' on page 153 undefined on input line 19760. LaTeX Warning: Reference `autoapi/toolbox_scs/util/index:module-toolbox_scs.uti l' on page 153 undefined on input line 19761. LaTeX Warning: Reference `autoapi/toolbox_scs/util/exceptions/index:module-tool box_scs.util.exceptions' on page 153 undefined on input line 19762. LaTeX Warning: Reference `autoapi/toolbox_scs/util/pkg/index:module-toolbox_scs .util.pkg' on page 153 undefined on input line 19763. [153] No file scs-toolbox.ind. Package longtable Warning: Table widths have changed. Rerun LaTeX. (./scs-toolbox.aux) Package rerunfilecheck Warning: File `scs-toolbox.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}{ /usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on scs-toolbox.pdf (157 pages, 618986 bytes). Transcript written on scs-toolbox.log. Latexmk: Index file 'scs-toolbox.idx' was written Latexmk: Missing input file: 'scs-toolbox.ind' from line 'No file scs-toolbox.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'scs-toolbox.pdf' Latexmk: List of undefined refs and citations: Reference `autoapi/toolbox_scs/base/index:module-toolbox_scs.base' on page 153 undefined on input line 19725 Reference `autoapi/toolbox_scs/base/knife_edge/index:module-toolbox_scs.base.knife_edge' on page 153 undefined on input line 19726 Reference `autoapi/toolbox_scs/base/tests/index:module-toolbox_scs.base.tests' on page 153 undefined on input line 19727 Reference `autoapi/toolbox_scs/base/tests/test_knife_edge/index:module-toolbox_scs.base.tests.test_knife_edge' on page 153 undefined on input line 19728 Reference `autoapi/toolbox_scs/constants/index:module-toolbox_scs.constants' on page 153 undefined on input line 19729 Reference `autoapi/toolbox_scs/detectors/azimuthal_integrator/index:module-toolbox_scs.detectors.azimuthal_integrator' on page 153 undefined on input line 19731 Reference `autoapi/toolbox_scs/detectors/bam_detectors/index:module-toolbox_scs.detectors.bam_detectors' on page 153 undefined on input line 19732 Reference `autoapi/toolbox_scs/detectors/digitizers/index:module-toolbox_scs.detectors.digitizers' on page 153 undefined on input line 19733 Reference `autoapi/toolbox_scs/detectors/dssc/index:module-toolbox_scs.detectors.dssc' on page 153 undefined on input line 19734 Reference `autoapi/toolbox_scs/detectors/dssc_data/index:module-toolbox_scs.detectors.dssc_data' on page 153 undefined on input line 19735 Reference `autoapi/toolbox_scs/detectors/dssc_misc/index:module-toolbox_scs.detectors.dssc_misc' on page 153 undefined on input line 19736 Reference `autoapi/toolbox_scs/detectors/dssc_plot/index:module-toolbox_scs.detectors.dssc_plot' on page 153 undefined on input line 19737 Reference `autoapi/toolbox_scs/detectors/dssc_processing/index:module-toolbox_scs.detectors.dssc_processing' on page 153 undefined on input line 19738 Reference `autoapi/toolbox_scs/detectors/fccd/index:module-toolbox_scs.detectors.fccd' on page 153 undefined on input line 19739 Reference `autoapi/toolbox_scs/detectors/hrixs/index:module-toolbox_scs.detectors.hrixs' on page 153 undefined on input line 19740 Reference `autoapi/toolbox_scs/detectors/index:module-toolbox_scs.detectors' on page 153 undefined on input line 19730 Reference `autoapi/toolbox_scs/detectors/pes/index:module-toolbox_scs.detectors.pes' on page 153 undefined on input line 19741 Reference `autoapi/toolbox_scs/detectors/xgm/index:module-toolbox_scs.detectors.xgm' on page 153 undefined on input line 19742 Reference `autoapi/toolbox_scs/index:module-toolbox_scs' on page 153 undefined on input line 19724 Reference `autoapi/toolbox_scs/load/index:module-toolbox_scs.load' on page 153 undefined on input line 19743 Reference `autoapi/toolbox_scs/misc/bunch_pattern/index:module-toolbox_scs.misc.bunch_pattern' on page 153 undefined on input line 19745 Reference `autoapi/toolbox_scs/misc/bunch_pattern_external/index:module-toolbox_scs.misc.bunch_pattern_external' on page 153 undefined on input line 19746 Reference `autoapi/toolbox_scs/misc/index:module-toolbox_scs.misc' on page 153 undefined on input line 19744 Reference `autoapi/toolbox_scs/misc/laser_utils/index:module-toolbox_scs.misc.laser_utils' on page 153 undefined on input line 19747 Reference `autoapi/toolbox_scs/misc/undulator/index:module-toolbox_scs.misc.undulator' on page 153 undefined on input line 19748 Reference `autoapi/toolbox_scs/mnemonics_machinery/index:module-toolbox_scs.mnemonics_machinery' on page 153 undefined on input line 19749 Reference `autoapi/toolbox_scs/routines/Reflectivity/index:module-toolbox_scs.routines.Reflectivity' on page 153 undefined on input line 19753 Reference `autoapi/toolbox_scs/routines/XAS/index:module-toolbox_scs.routines.XAS' on page 153 undefined on input line 19754 Reference `autoapi/toolbox_scs/routines/boz/index:module-toolbox_scs.routines.boz' on page 153 undefined on input line 19751 Reference `autoapi/toolbox_scs/routines/index:module-toolbox_scs.routines' on page 153 undefined on input line 19750 Reference `autoapi/toolbox_scs/routines/knife_edge/index:module-toolbox_scs.routines.knife_edge' on page 153 undefined on input line 19752 Reference `autoapi/toolbox_scs/test/index:module-toolbox_scs.test' on page 153 undefined on input line 19755 Reference `autoapi/toolbox_scs/test/test_dssc_cls/index:module-toolbox_scs.test.test_dssc_cls' on page 153 undefined on input line 19756 Reference `autoapi/toolbox_scs/test/test_hrixs/index:module-toolbox_scs.test.test_hrixs' on page 153 undefined on input line 19757 Reference `autoapi/toolbox_scs/test/test_misc/index:module-toolbox_scs.test.test_misc' on page 153 undefined on input line 19758 Reference `autoapi/toolbox_scs/test/test_top_level/index:module-toolbox_scs.test.test_top_level' on page 153 undefined on input line 19759 Reference `autoapi/toolbox_scs/test/test_utils/index:module-toolbox_scs.test.test_utils' on page 153 undefined on input line 19760 Reference `autoapi/toolbox_scs/util/exceptions/index:module-toolbox_scs.util.exceptions' on page 153 undefined on input line 19762 Reference `autoapi/toolbox_scs/util/index:module-toolbox_scs.util' on page 153 undefined on input line 19761 Reference `autoapi/toolbox_scs/util/pkg/index:module-toolbox_scs.util.pkg' on page 153 undefined on input line 19763 Latexmk: Summary of warnings: Latex failed to resolve 41 reference(s) Rule 'makeindex scs-toolbox.idx': File changes, etc: Non-existent destination files: 'scs-toolbox.ind' ------------ Run number 1 of rule 'makeindex scs-toolbox.idx' ------------ ------------ Running 'makeindex -s python.ist -o "scs-toolbox.ind" "scs-toolbox.idx"' ------------ Latexmk: applying rule 'makeindex scs-toolbox.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file scs-toolbox.idx....done (636 entries accepted, 0 rejected). Sorting entries........done (6314 comparisons). Generating output file scs-toolbox.ind....done (928 lines written, 0 warnings). Output written in scs-toolbox.ind. Transcript written in scs-toolbox.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'scs-toolbox.aux' 'scs-toolbox.ind' ------------ Run number 2 of rule 'pdflatex' ------------ Latexmk: applying rule 'pdflatex'... ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="scs-toolbox" "SCSToolbox.tex"' ------------ This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./SCSToolbox.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (./sphinxlatexgraphics.sty) (./sphinxpackageboxes.sty) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty)) (./sphinxlatexnumfig.sty (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty)) (./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file scs-toolbox.idx (./scs-toolbox.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./scs-toolbox.out) (./scs-toolbox.out) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./scs-toolbox.toc) [1] [2] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [1] [2] Chapter 2. [3 <./metadata.png>] [4] Chapter 3. [5] [6] Chapter 4. (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] Underfull \hbox (badness 10000) in paragraph at lines 2129--2129 []|[][]\T1/txtt/m/sl/10 check_peak_params[][]\T1/qtm/m/n/10 (run, mnemonic[, ra w_trace, Underfull \hbox (badness 10000) in paragraph at lines 2129--2129 []|[][]\T1/txtt/m/sl/10 get_digitizer_peaks[][]\T1/qtm/m/n/10 (run[, mnemon-ics , Underfull \hbox (badness 10000) in paragraph at lines 2129--2129 []|[][]\T1/txtt/m/sl/10 check_peak_params[][]\T1/qtm/m/n/10 (run, mnemonic[, ra w_trace, Underfull \hbox (badness 10000) in paragraph at lines 2129--2129 []|[][]\T1/txtt/m/sl/10 get_digitizer_peaks[][]\T1/qtm/m/n/10 (run[, mnemon-ics , [22] [23] [24] [25] [26] [27] [28] Underfull \hbox (badness 10000) in paragraph at lines 3184--3184 []|[][]\T1/txtt/m/sl/10 get_xgm_formatted[][]\T1/qtm/m/n/10 (run_obj, xgm_name, Underfull \hbox (badness 10000) in paragraph at lines 3184--3184 []|[][]\T1/txtt/m/sl/10 get_xgm_formatted[][]\T1/qtm/m/n/10 (run_obj, xgm_name, [29] [30] [31] Underfull \hbox (badness 5817) in paragraph at lines 3435--3435 []|[][]\T1/txtt/m/sl/10 plot_xgm_threshold[][]\T1/qtm/m/n/10 (xgm[, xgm_min, xg m_max, Underfull \hbox (badness 5817) in paragraph at lines 3435--3435 []|[][]\T1/txtt/m/sl/10 plot_xgm_threshold[][]\T1/qtm/m/n/10 (xgm[, xgm_min, xg m_max, Underfull \hbox (badness 10000) in paragraph at lines 3507--3507 []|[][]\T1/txtt/m/sl/10 process_dssc_data[][]\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, Underfull \hbox (badness 10000) in paragraph at lines 3507--3507 []|[][]\T1/txtt/m/sl/10 process_dssc_data[][]\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, [32] [33] [34] [35] [36] [37] [38] [39] Underfull \hbox (badness 10000) in paragraph at lines 4741--4741 []|[][]\T1/txtt/m/sl/10 get_xgm[][]\T1/qtm/m/n/10 (run[, mnemon-ics, merge_with , in-dices, Underfull \hbox (badness 10000) in paragraph at lines 4741--4741 []|[][]\T1/txtt/m/sl/10 get_xgm[][]\T1/qtm/m/n/10 (run[, mnemon-ics, merge_with , in-dices, [40] [41] Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|[][]\T1/txtt/m/sl/10 check_peak_params[][]\T1/qtm/m/n/10 (run, mnemonic[, ra w_trace, Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|[][]\T1/txtt/m/sl/10 get_digitizer_peaks[][]\T1/qtm/m/n/10 (run[, mnemon-ics , Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|[][]\T1/txtt/m/sl/10 get_xgm_formatted[][]\T1/qtm/m/n/10 (run_obj, xgm_name, Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|[][]\T1/txtt/m/sl/10 process_dssc_data[][]\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|[][]\T1/txtt/m/sl/10 get_xgm[][]\T1/qtm/m/n/10 (run[, mnemon-ics, merge_with , in-dices, Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|[][]\T1/txtt/m/sl/10 check_peak_params[][]\T1/qtm/m/n/10 (run, mnemonic[, ra w_trace, Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|[][]\T1/txtt/m/sl/10 get_digitizer_peaks[][]\T1/qtm/m/n/10 (run[, mnemon-ics , Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|[][]\T1/txtt/m/sl/10 get_xgm_formatted[][]\T1/qtm/m/n/10 (run_obj, xgm_name, Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|[][]\T1/txtt/m/sl/10 process_dssc_data[][]\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|[][]\T1/txtt/m/sl/10 get_xgm[][]\T1/qtm/m/n/10 (run[, mnemon-ics, merge_with , in-dices, [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] Underfull \hbox (badness 10000) in paragraph at lines 7347--7347 []|[][]\T1/txtt/m/sl/10 get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, Underfull \hbox (badness 10000) in paragraph at lines 7347--7347 []|[][]\T1/txtt/m/sl/10 get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, [60] [61] [62] Underfull \hbox (badness 10000) in paragraph at lines 7770--7770 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, Underfull \hbox (badness 10000) in paragraph at lines 7770--7770 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, [63] [64] [65] Underfull \hbox (badness 10000) in paragraph at lines 8181--8181 []|[][]\T1/txtt/m/sl/10 get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, Underfull \hbox (badness 10000) in paragraph at lines 8181--8181 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, Underfull \hbox (badness 10000) in paragraph at lines 8181--8181 []|[][]\T1/txtt/m/sl/10 get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, Underfull \hbox (badness 10000) in paragraph at lines 8181--8181 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, [66] [67] [68] [69] [70] [71] [72] Underfull \hbox (badness 10000) in paragraph at lines 9292--9292 []|[][]\T1/txtt/m/sl/10 inspect_histogram[][]\T1/qtm/m/n/10 (arr[, arr_dark, ma sk, ex- Underfull \hbox (badness 10000) in paragraph at lines 9292--9292 []|[][]\T1/txtt/m/sl/10 compute_flat_field_correction[][]\T1/qtm/m/n/10 (rois, params[, Underfull \hbox (badness 7362) in paragraph at lines 9292--9292 []|[][]\T1/txtt/m/sl/10 process[][]\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, mask, Underfull \hbox (badness 10000) in paragraph at lines 9292--9292 []|[][]\T1/txtt/m/sl/10 inspect_histogram[][]\T1/qtm/m/n/10 (arr[, arr_dark, ma sk, ex- Underfull \hbox (badness 10000) in paragraph at lines 9292--9292 []|[][]\T1/txtt/m/sl/10 compute_flat_field_correction[][]\T1/qtm/m/n/10 (rois, params[, Underfull \hbox (badness 7362) in paragraph at lines 9292--9292 []|[][]\T1/txtt/m/sl/10 process[][]\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, mask, [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] Underfull \hbox (badness 10000) in paragraph at lines 10646--10648 []|[][]\T1/txtt/m/sl/10 inspect_histogram[][]\T1/qtm/m/n/10 (arr[, arr_dark, ma sk, ex- Underfull \hbox (badness 10000) in paragraph at lines 10674--10676 []|[][]\T1/txtt/m/sl/10 compute_flat_field_correction[][]\T1/qtm/m/n/10 (rois, params[, Underfull \hbox (badness 7362) in paragraph at lines 10800--10802 []|[][]\T1/txtt/m/sl/10 process[][]\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, mask, [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] Underfull \hbox (badness 5970) in paragraph at lines 13966--13969 []\T1/txtt/bx/n/10 extract_bam \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 bool\T1/qtm/m/n /10 ) ^^U If True, ex-tracts the val-ues from BAM vari-ables (e.g. [107] [108] [109] [110] Underfull \hbox (badness 10000) in paragraph at lines 14483--14485 []|[][]\T1/txtt/m/sl/10 check_peak_params[][]\T1/qtm/m/n/10 (run, mnemonic[, ra w_trace, Underfull \hbox (badness 10000) in paragraph at lines 14490--14492 []|[][]\T1/txtt/m/sl/10 get_digitizer_peaks[][]\T1/qtm/m/n/10 (run[, mnemon-ics , Underfull \hbox (badness 10000) in paragraph at lines 14567--14569 []|[][]\T1/txtt/m/sl/10 get_xgm_formatted[][]\T1/qtm/m/n/10 (run_obj, xgm_name, Underfull \hbox (badness 10000) in paragraph at lines 14595--14597 []|[][]\T1/txtt/m/sl/10 process_dssc_data[][]\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, Underfull \hbox (badness 10000) in paragraph at lines 14623--14625 []|[][]\T1/txtt/m/sl/10 get_xgm[][]\T1/qtm/m/n/10 (run[, mnemon-ics, merge_with , in-dices, Underfull \hbox (badness 10000) in paragraph at lines 14686--14688 []|[][]\T1/txtt/m/sl/10 get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, [111] Underfull \hbox (badness 10000) in paragraph at lines 14763--14765 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, Underfull \hbox (badness 10000) in paragraph at lines 14833--14835 []|[][]\T1/txtt/m/sl/10 inspect_histogram[][]\T1/qtm/m/n/10 (arr[, arr_dark, ma sk, ex- Underfull \hbox (badness 10000) in paragraph at lines 14861--14863 []|[][]\T1/txtt/m/sl/10 compute_flat_field_correction[][]\T1/qtm/m/n/10 (rois, params[, [112] Underfull \hbox (badness 7362) in paragraph at lines 14987--14989 []|[][]\T1/txtt/m/sl/10 process[][]\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, mask, [113] [114] [115] [116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] Underfull \hbox (badness 5970) in paragraph at lines 17478--17481 []\T1/txtt/bx/n/10 extract_bam \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 bool\T1/qtm/m/n /10 ) ^^U If True, ex-tracts the val-ues from BAM vari-ables (e.g. [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] Chapter 5. [151] [152] Underfull \hbox (badness 10000) in paragraph at lines 19731--19732 []\T1/txtt/m/n/10 toolbox_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 , [153] (./scs-toolbox.ind [154] Overfull \hbox (82.43233pt too wide) in paragraph at lines 18--20 []\T1/txtt/m/n/10 __call__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/txtt/m/n/10 __del__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/txtt/m/n/10 __del__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 27--29 []\T1/txtt/m/n/10 __str__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.boz.parameters Underfull \hbox (badness 5519) in paragraph at lines 29--30 []\T1/txtt/m/n/10 __str__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 31--33 []\T1/txtt/m/n/10 _bin_metadata() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. detectors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 33--35 []\T1/txtt/m/n/10 _bin_metadata() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 33--35 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 37--39 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 37--39 \T1/qtm/m/it/10 box_scs.AzimuthalIntegratorDSSC method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 39--41 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 39--41 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 41--43 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 41--43 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegratorDSSC Underfull \hbox (badness 10000) in paragraph at lines 43--45 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (49.47249pt too wide) in paragraph at lines 43--45 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 45--47 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (73.36249pt too wide) in paragraph at lines 45--47 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegratorDSSC Underfull \hbox (badness 10000) in paragraph at lines 47--49 []\T1/txtt/m/n/10 _calc_indices() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 49--51 []\T1/txtt/m/n/10 _calc_indices() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 49--51 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 51--53 []\T1/txtt/m/n/10 _calc_indices() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (49.47249pt too wide) in paragraph at lines 51--53 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 55--57 []\T1/txtt/m/n/10 _calc_polar_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 55--57 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 57--59 []\T1/txtt/m/n/10 _calc_polar_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (49.47249pt too wide) in paragraph at lines 57--59 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 61--63 []\T1/txtt/m/n/10 _with_values() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule too l- Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/txtt/m/n/10 add_attributes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 66--68 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/txtt/m/n/10 add_attributes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 68--70 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 70--71 []\T1/txtt/m/n/10 add_attributes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 73--74 []\T1/txtt/m/n/10 add_binner() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 75--77 []\T1/txtt/m/n/10 add_dataArray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 75--77 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter [155] Underfull \hbox (badness 10000) in paragraph at lines 77--79 []\T1/txtt/m/n/10 add_dataArray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 77--79 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 79--80 []\T1/txtt/m/n/10 add_dataArray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 81--82 []\T1/txtt/m/n/10 aggregate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 5475) in paragraph at lines 83--84 []\T1/txtt/m/n/10 aggregator() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 84--85 []\T1/txtt/m/n/10 aggregator() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 87--89 []\T1/txtt/m/n/10 aggregators \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS at- Underfull \hbox (badness 10000) in paragraph at lines 92--94 []\T1/txtt/m/n/10 align_ol_to_fel_pId() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 96--97 []\T1/txtt/m/n/10 average_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 101--103 []\T1/txtt/m/n/10 AzimuthalIntegrator \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in tool- Underfull \hbox (badness 10000) in paragraph at lines 101--103 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 104--106 []\T1/txtt/m/n/10 AzimuthalIntegratorDSSC \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in tool- Underfull \hbox (badness 10000) in paragraph at lines 106--108 []\T1/txtt/m/n/10 AzimuthalIntegratorDSSC \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in tool- Underfull \hbox (badness 10000) in paragraph at lines 106--108 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 114--115 []\T1/txtt/m/n/10 binning() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 121--122 []\T1/txtt/m/n/10 calc_q() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.Azimuth alIntegrator method\T1/qtm/m/n/10 ), Overfull \hbox (71.93236pt too wide) in paragraph at lines 122--124 []\T1/txtt/m/n/10 calc_q() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detecto rs.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 124--126 []\T1/txtt/m/n/10 calc_q() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detecto rs.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 128--129 []\T1/txtt/m/n/10 calibrate_xgm() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Underfull \hbox (badness 10000) in paragraph at lines 130--131 []\T1/txtt/m/n/10 centroid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 133--135 []\T1/txtt/m/n/10 centroid_one() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 137--138 []\T1/txtt/m/n/10 check_peak_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 138--140 []\T1/txtt/m/n/10 check_peak_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 140--142 []\T1/txtt/m/n/10 cleanup_tmp_dir() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 142--144 []\T1/txtt/m/n/10 collect_fastccd_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 142--144 \T1/qtm/m/it/10 box_scs.detectors.fccd.FastCCD method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 144--146 []\T1/txtt/m/n/10 combine_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 144--146 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 146--148 []\T1/txtt/m/n/10 combine_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 146--148 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 148--149 []\T1/txtt/m/n/10 combine_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 158--159 []\T1/txtt/m/n/10 create_dssc_bins() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 159--161 []\T1/txtt/m/n/10 create_dssc_bins() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 161--163 []\T1/txtt/m/n/10 create_pulsemask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 161--163 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 163--165 []\T1/txtt/m/n/10 create_pulsemask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 163--165 \T1/qtm/m/it/10 box_scs.detectors.DSSCBinner method\T1/qtm/m/n/10 ), [156] Underfull \hbox (badness 10000) in paragraph at lines 165--166 []\T1/txtt/m/n/10 create_pulsemask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_s cs.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 177--179 []\T1/txtt/m/n/10 dask_load_persistently() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool - Underfull \hbox (badness 10000) in paragraph at lines 177--179 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 179--181 []\T1/txtt/m/n/10 dask_load_persistently() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool - Underfull \hbox (badness 10000) in paragraph at lines 181--183 []\T1/txtt/m/n/10 define_scan() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.de tectors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 185--187 []\T1/txtt/m/n/10 degToRelPower() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Underfull \hbox (badness 10000) in paragraph at lines 189--191 []\T1/txtt/m/n/10 delayToPosition() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 206--208 []\T1/txtt/m/n/10 ENERGY_INTERCEPT \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .detectors.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 212--214 []\T1/txtt/m/n/10 ENERGY_SLOPE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 217--219 []\T1/txtt/m/n/10 extractBunchPattern() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 225--226 []\T1/txtt/m/n/10 ff_refine_crit() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 233--234 []\T1/txtt/m/n/10 find_curvature() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .detectors.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 241--243 []\T1/txtt/m/n/10 find_rois_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 243--245 []\T1/txtt/m/n/10 find_rois_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 247--248 []\T1/txtt/m/n/10 flat_field_guess() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_s cs.parameters Underfull \hbox (badness 10000) in paragraph at lines 248--250 []\T1/txtt/m/n/10 flat_field_guess() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 248--250 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 254--256 []\T1/txtt/m/n/10 fluenceCalibration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 257--258 []\T1/txtt/m/n/10 from_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.hrixs.hRIXS [157] Underfull \hbox (badness 10000) in paragraph at lines 266--268 []\T1/txtt/m/n/10 get_bam() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 270--272 []\T1/txtt/m/n/10 get_bam_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 273--275 []\T1/txtt/m/n/10 get_data_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 275--277 []\T1/txtt/m/n/10 get_data_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 278--280 []\T1/txtt/m/n/10 get_dig_avg_trace() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 280--282 []\T1/txtt/m/n/10 get_dig_avg_trace() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 283--285 []\T1/txtt/m/n/10 get_digitizer_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 285--287 []\T1/txtt/m/n/10 get_digitizer_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 288--290 []\T1/txtt/m/n/10 get_flat_field() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 288--290 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 290--292 []\T1/txtt/m/n/10 get_flat_field() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .routines.parameters Underfull \hbox (badness 10000) in paragraph at lines 293--294 []\T1/txtt/m/n/10 get_Fnl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.boz.parameters Underfull \hbox (badness 5519) in paragraph at lines 294--295 []\T1/txtt/m/n/10 get_Fnl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 295--297 []\T1/txtt/m/n/10 get_info() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 297--298 []\T1/txtt/m/n/10 get_info() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 301--303 []\T1/txtt/m/n/10 get_laser_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 304--306 []\T1/txtt/m/n/10 get_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routi nes.boz.parameters Underfull \hbox (badness 6220) in paragraph at lines 308--310 []\T1/txtt/m/n/10 get_mask_idx() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.r outines.boz.parameters Underfull \hbox (badness 10000) in paragraph at lines 310--312 []\T1/txtt/m/n/10 get_mask_idx() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.r outines.parameters Underfull \hbox (badness 5475) in paragraph at lines 312--313 []\T1/txtt/m/n/10 get_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 313--315 []\T1/txtt/m/n/10 get_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 318--320 []\T1/txtt/m/n/10 get_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 322--324 []\T1/txtt/m/n/10 get_pes_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 328--329 []\T1/txtt/m/n/10 get_roi_pixel_pos() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 329--331 []\T1/txtt/m/n/10 get_roi_pixel_pos() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 333--335 []\T1/txtt/m/n/10 get_sase_pId() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule too l- Underfull \hbox (badness 10000) in paragraph at lines 335--337 []\T1/txtt/m/n/10 get_tim_binned() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 335--337 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 342--344 []\T1/txtt/m/n/10 get_tim_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Underfull \hbox (badness 10000) in paragraph at lines 345--346 []\T1/txtt/m/n/10 get_undulator_config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- Underfull \hbox (badness 10000) in paragraph at lines 346--348 []\T1/txtt/m/n/10 get_undulator_config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- [158] Underfull \hbox (badness 10000) in paragraph at lines 352--354 []\T1/txtt/m/n/10 get_xgm_binned() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 352--354 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 358--359 []\T1/txtt/m/n/10 get_xgm_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 359--361 []\T1/txtt/m/n/10 get_xgm_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 366--368 []\T1/txtt/m/n/10 histogram_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 375--376 []\T1/txtt/m/n/10 inspect_correction() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 376--378 []\T1/txtt/m/n/10 inspect_correction() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 381--382 []\T1/txtt/m/n/10 inspect_flat_field_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 382--384 []\T1/txtt/m/n/10 inspect_flat_field_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 384--386 []\T1/txtt/m/n/10 inspect_flat_field_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 390--391 []\T1/txtt/m/n/10 inspect_histogram() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 391--393 []\T1/txtt/m/n/10 inspect_histogram() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 395--396 []\T1/txtt/m/n/10 inspect_nl_fit() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 397--399 []\T1/txtt/m/n/10 inspect_plane_fitting() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 399--401 []\T1/txtt/m/n/10 inspect_plane_fitting() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 405--406 []\T1/txtt/m/n/10 inspect_saturation() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 406--408 []\T1/txtt/m/n/10 inspect_saturation() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 409--410 []\T1/txtt/m/n/10 integrate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 413--415 []\T1/txtt/m/n/10 is_ppl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 417--419 []\T1/txtt/m/n/10 is_pulse_at() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 421--423 []\T1/txtt/m/n/10 is_sase_1() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 425--427 []\T1/txtt/m/n/10 is_sase_3() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 434--436 []\T1/txtt/m/n/10 knife_edge() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 437--439 []\T1/txtt/m/n/10 knife_edge_base() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 442--444 []\T1/txtt/m/n/10 list_suites() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 445--447 []\T1/txtt/m/n/10 list_suites() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - [159] Underfull \hbox (badness 10000) in paragraph at lines 452--454 []\T1/txtt/m/n/10 load() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routines. boz.parameters class Underfull \hbox (badness 10000) in paragraph at lines 455--457 []\T1/txtt/m/n/10 load_binned() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.de tectors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 458--459 []\T1/txtt/m/n/10 load_dark() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 462--464 []\T1/txtt/m/n/10 load_dssc_info() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 466--468 []\T1/txtt/m/n/10 load_dssc_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 468--470 []\T1/txtt/m/n/10 load_gain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 472--474 []\T1/txtt/m/n/10 load_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 474--476 []\T1/txtt/m/n/10 load_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 478--480 []\T1/txtt/m/n/10 load_tim() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 480--481 []\T1/txtt/m/n/10 load_tim() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 484--486 []\T1/txtt/m/n/10 load_xarray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 486--488 []\T1/txtt/m/n/10 load_xgm() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 488--489 []\T1/txtt/m/n/10 load_xgm() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 505--507 []\T1/txtt/m/n/10 mnemonics_for_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 512--513 []| \T1/txtt/m/n/10 toolbox_scs.base.tests.test_knife_edge\T1/qtm/m/n/10 , Overfull \hbox (13.12186pt too wide) in paragraph at lines 515--516 []| \T1/txtt/m/n/10 toolbox_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 530--531 []| \T1/txtt/m/n/10 toolbox_scs.misc.bunch_pattern_external\T1/qtm/m/n/10 , [160] Underfull \hbox (badness 10000) in paragraph at lines 564--565 []\T1/txtt/m/n/10 normalize() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 568--570 []\T1/txtt/m/n/10 npulses_has_changed() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 575--576 []\T1/txtt/m/n/10 open_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 580--581 []\T1/txtt/m/n/10 parabola() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 593--595 []\T1/txtt/m/n/10 plane_fitting_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- Underfull \hbox (badness 10000) in paragraph at lines 595--597 []\T1/txtt/m/n/10 plane_fitting_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- Underfull \hbox (badness 10000) in paragraph at lines 597--599 []\T1/txtt/m/n/10 plot_azimuthal_int() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 597--599 \T1/qtm/m/it/10 box_scs.detectors.fccd.FastCCD method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 599--601 []\T1/txtt/m/n/10 plot_azimuthal_line_cut() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 too l- Underfull \hbox (badness 10000) in paragraph at lines 599--601 \T1/qtm/m/it/10 box_scs.detectors.fccd.FastCCD method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 601--603 []\T1/txtt/m/n/10 plot_binner() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 603--605 []\T1/txtt/m/n/10 plot_binner_hist() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 605--607 []\T1/txtt/m/n/10 plot_FastCCD() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 607--609 []\T1/txtt/m/n/10 plot_hist_processed() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 609--611 []\T1/txtt/m/n/10 plot_scan() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 613--615 []\T1/txtt/m/n/10 plot_xgm_threshold() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 617--619 []\T1/txtt/m/n/10 positionToDelay() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 622--624 []\T1/txtt/m/n/10 process_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 622--624 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 624--626 []\T1/txtt/m/n/10 process_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 626--627 []\T1/txtt/m/n/10 process_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.D SSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 628--629 []\T1/txtt/m/n/10 process_dssc_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 629--631 []\T1/txtt/m/n/10 process_dssc_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 633--634 []\T1/txtt/m/n/10 process_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 634--636 []\T1/txtt/m/n/10 process_one_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 643--645 []\T1/txtt/m/n/10 pulsePatternInfo() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- [161] Underfull \hbox (badness 10000) in paragraph at lines 649--651 []\T1/txtt/m/n/10 quickmask_DSSC_ASIC() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 651--653 []\T1/txtt/m/n/10 quickmask_DSSC_ASIC() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 658--660 []\T1/txtt/m/n/10 reflectivity() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule too l- Underfull \hbox (badness 6188) in paragraph at lines 669--670 []\T1/txtt/m/n/10 save() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detectors .fccd.FastCCD method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 674--676 []\T1/txtt/m/n/10 save_attributes_h5() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 676--678 []\T1/txtt/m/n/10 save_attributes_h5() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 678--680 []\T1/txtt/m/n/10 save_formatted_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 678--680 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 680--682 []\T1/txtt/m/n/10 save_formatted_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 680--682 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 686--688 []\T1/txtt/m/n/10 save_xarray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 689--691 []\T1/txtt/m/n/10 set_flat_field() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 689--691 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 691--693 []\T1/txtt/m/n/10 set_flat_field() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .routines.parameters Underfull \hbox (badness 10000) in paragraph at lines 694--695 []\T1/txtt/m/n/10 set_Fnl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.boz.parameters Underfull \hbox (badness 5519) in paragraph at lines 695--696 []\T1/txtt/m/n/10 set_Fnl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 697--699 []\T1/txtt/m/n/10 set_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routi nes.boz.parameters Underfull \hbox (badness 5475) in paragraph at lines 700--701 []\T1/txtt/m/n/10 set_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 701--703 []\T1/txtt/m/n/10 set_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 704--706 []\T1/txtt/m/n/10 setUp() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.test.tes t_misc.TestDataAccess Underfull \hbox (badness 10000) in paragraph at lines 706--708 []\T1/txtt/m/n/10 setUp() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.test.tes t_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 708--710 []\T1/txtt/m/n/10 setUp() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.test.tes t_utils.TestDataAccess Underfull \hbox (badness 10000) in paragraph at lines 710--712 []\T1/txtt/m/n/10 setup_tmp_dir() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Overfull \hbox (5.7323pt too wide) in paragraph at lines 714--716 []\T1/txtt/m/n/10 setUpClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.tes t.test_misc.TestDataAccess Overfull \hbox (8.28223pt too wide) in paragraph at lines 716--718 []\T1/txtt/m/n/10 setUpClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.tes t.test_top_level.TestToolbox Overfull \hbox (4.6323pt too wide) in paragraph at lines 718--720 []\T1/txtt/m/n/10 setUpClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.tes t.test_utils.TestDataAccess Underfull \hbox (badness 6526) in paragraph at lines 744--746 []\T1/txtt/m/n/10 tearDown() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.test. test_utils.TestDataAccess Underfull \hbox (badness 10000) in paragraph at lines 746--748 []\T1/txtt/m/n/10 tearDownClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 746--748 \T1/qtm/m/it/10 box_scs.test.test_dssc_cls.TestDSSC class [162] Underfull \hbox (badness 10000) in paragraph at lines 748--750 []\T1/txtt/m/n/10 tearDownClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 748--750 \T1/qtm/m/it/10 box_scs.test.test_misc.TestDataAccess class Underfull \hbox (badness 10000) in paragraph at lines 750--752 []\T1/txtt/m/n/10 tearDownClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 750--752 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox class Underfull \hbox (badness 10000) in paragraph at lines 752--754 []\T1/txtt/m/n/10 tearDownClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 752--754 \T1/qtm/m/it/10 box_scs.test.test_utils.TestDataAccess class Underfull \hbox (badness 10000) in paragraph at lines 754--756 []\T1/txtt/m/n/10 test_centroid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 754--756 \T1/qtm/m/it/10 box_scs.test.test_hrixs.TestHRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 756--758 []\T1/txtt/m/n/10 test_constant() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 756--758 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox Overfull \hbox (2.86227pt too wide) in paragraph at lines 758--760 []\T1/txtt/m/n/10 test_create() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.te st.test_dssc_cls.TestDSSC Underfull \hbox (badness 10000) in paragraph at lines 760--762 []\T1/txtt/m/n/10 test_extractBunchPattern() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 to ol- Underfull \hbox (badness 10000) in paragraph at lines 762--764 []\T1/txtt/m/n/10 test_getparam() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 762--764 \T1/qtm/m/it/10 box_scs.test.test_hrixs.TestHRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 764--766 []\T1/txtt/m/n/10 test_integration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 764--766 \T1/qtm/m/it/10 box_scs.test.test_hrixs.TestHRIXS method\T1/qtm/m/n/10 ), Overfull \hbox (5.7323pt too wide) in paragraph at lines 766--768 []\T1/txtt/m/n/10 test_isppl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.tes t.test_misc.TestDataAccess Underfull \hbox (badness 10000) in paragraph at lines 768--770 []\T1/txtt/m/n/10 test_issase1() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 770--772 []\T1/txtt/m/n/10 test_issase3() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 772--774 []\T1/txtt/m/n/10 test_knife_edge_base() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- Overfull \hbox (3.03224pt too wide) in paragraph at lines 774--776 []\T1/txtt/m/n/10 test_load() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.test .test_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 776--778 []\T1/txtt/m/n/10 test_loadbinnedarray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 776--778 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 778--780 []\T1/txtt/m/n/10 test_normalization_all() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool - Underfull \hbox (badness 10000) in paragraph at lines 778--780 \T1/qtm/m/it/10 box_scs.test.test_dssc_cls.TestDSSC method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 780--782 []\T1/txtt/m/n/10 test_openrun() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 780--782 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 782--784 []\T1/txtt/m/n/10 test_openrunpath() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 782--784 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 784--786 []\T1/txtt/m/n/10 test_prepare_arrays_nans() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 786--788 []\T1/txtt/m/n/10 test_prepare_arrays_range() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 788--790 []\T1/txtt/m/n/10 test_prepare_arrays_size() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 790--792 []\T1/txtt/m/n/10 test_processing_quick() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 790--792 \T1/qtm/m/it/10 box_scs.test.test_dssc_cls.TestDSSC method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 792--794 []\T1/txtt/m/n/10 test_pulsePatternInfo() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 794--796 []\T1/txtt/m/n/10 test_range_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 796--798 []\T1/txtt/m/n/10 test_rundir1() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 798--800 []\T1/txtt/m/n/10 test_rundir2() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 800--802 []\T1/txtt/m/n/10 test_rundir3() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 802--804 []\T1/txtt/m/n/10 test_use_xgm_tim() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 802--804 \T1/qtm/m/it/10 box_scs.test.test_dssc_cls.TestDSSC method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 811--813 []\T1/txtt/m/n/10 THRESHOLD \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.hrixs.hRIXS at- [163] Underfull \hbox (badness 10000) in paragraph at lines 918--920 []\T1/txtt/m/n/10 xgm_filter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.fccd.FastCCD [164]) (./scs-toolbox.aux) Package rerunfilecheck Warning: File `scs-toolbox.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}{ /usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on scs-toolbox.pdf (168 pages, 693369 bytes). Transcript written on scs-toolbox.log. Latexmk: Index file 'scs-toolbox.idx' was written Latexmk: References changed. Latexmk: Log file says output to 'scs-toolbox.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'scs-toolbox.aux' 'scs-toolbox.out' 'scs-toolbox.toc' ------------ Run number 3 of rule 'pdflatex' ------------ Latexmk: applying rule 'pdflatex'... ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="scs-toolbox" "SCSToolbox.tex"' ------------ This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./SCSToolbox.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (./sphinxlatexgraphics.sty) (./sphinxpackageboxes.sty) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty)) (./sphinxlatexnumfig.sty (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty)) (./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file scs-toolbox.idx (./scs-toolbox.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./scs-toolbox.out) (./scs-toolbox.out) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./scs-toolbox.toc) [1] [2] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [1] [2] Chapter 2. [3 <./metadata.png>] [4] Chapter 3. [5] [6] Chapter 4. (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] Underfull \hbox (badness 10000) in paragraph at lines 2129--2129 []|[][]\T1/txtt/m/sl/10 check_peak_params[][]\T1/qtm/m/n/10 (run, mnemonic[, ra w_trace, Underfull \hbox (badness 10000) in paragraph at lines 2129--2129 []|[][]\T1/txtt/m/sl/10 get_digitizer_peaks[][]\T1/qtm/m/n/10 (run[, mnemon-ics , Underfull \hbox (badness 10000) in paragraph at lines 2129--2129 []|[][]\T1/txtt/m/sl/10 check_peak_params[][]\T1/qtm/m/n/10 (run, mnemonic[, ra w_trace, Underfull \hbox (badness 10000) in paragraph at lines 2129--2129 []|[][]\T1/txtt/m/sl/10 get_digitizer_peaks[][]\T1/qtm/m/n/10 (run[, mnemon-ics , [22] [23] [24] [25] [26] [27] [28] Underfull \hbox (badness 10000) in paragraph at lines 3184--3184 []|[][]\T1/txtt/m/sl/10 get_xgm_formatted[][]\T1/qtm/m/n/10 (run_obj, xgm_name, Underfull \hbox (badness 10000) in paragraph at lines 3184--3184 []|[][]\T1/txtt/m/sl/10 get_xgm_formatted[][]\T1/qtm/m/n/10 (run_obj, xgm_name, [29] [30] [31] Underfull \hbox (badness 5817) in paragraph at lines 3435--3435 []|[][]\T1/txtt/m/sl/10 plot_xgm_threshold[][]\T1/qtm/m/n/10 (xgm[, xgm_min, xg m_max, Underfull \hbox (badness 5817) in paragraph at lines 3435--3435 []|[][]\T1/txtt/m/sl/10 plot_xgm_threshold[][]\T1/qtm/m/n/10 (xgm[, xgm_min, xg m_max, Underfull \hbox (badness 10000) in paragraph at lines 3507--3507 []|[][]\T1/txtt/m/sl/10 process_dssc_data[][]\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, Underfull \hbox (badness 10000) in paragraph at lines 3507--3507 []|[][]\T1/txtt/m/sl/10 process_dssc_data[][]\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, [32] [33] [34] [35] [36] [37] [38] [39] Underfull \hbox (badness 10000) in paragraph at lines 4741--4741 []|[][]\T1/txtt/m/sl/10 get_xgm[][]\T1/qtm/m/n/10 (run[, mnemon-ics, merge_with , in-dices, Underfull \hbox (badness 10000) in paragraph at lines 4741--4741 []|[][]\T1/txtt/m/sl/10 get_xgm[][]\T1/qtm/m/n/10 (run[, mnemon-ics, merge_with , in-dices, [40] [41] Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|[][]\T1/txtt/m/sl/10 check_peak_params[][]\T1/qtm/m/n/10 (run, mnemonic[, ra w_trace, Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|[][]\T1/txtt/m/sl/10 get_digitizer_peaks[][]\T1/qtm/m/n/10 (run[, mnemon-ics , Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|[][]\T1/txtt/m/sl/10 get_xgm_formatted[][]\T1/qtm/m/n/10 (run_obj, xgm_name, Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|[][]\T1/txtt/m/sl/10 process_dssc_data[][]\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|[][]\T1/txtt/m/sl/10 get_xgm[][]\T1/qtm/m/n/10 (run[, mnemon-ics, merge_with , in-dices, Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|[][]\T1/txtt/m/sl/10 check_peak_params[][]\T1/qtm/m/n/10 (run, mnemonic[, ra w_trace, Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|[][]\T1/txtt/m/sl/10 get_digitizer_peaks[][]\T1/qtm/m/n/10 (run[, mnemon-ics , Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|[][]\T1/txtt/m/sl/10 get_xgm_formatted[][]\T1/qtm/m/n/10 (run_obj, xgm_name, Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|[][]\T1/txtt/m/sl/10 process_dssc_data[][]\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, Underfull \hbox (badness 10000) in paragraph at lines 5085--5085 []|[][]\T1/txtt/m/sl/10 get_xgm[][]\T1/qtm/m/n/10 (run[, mnemon-ics, merge_with , in-dices, [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] Underfull \hbox (badness 10000) in paragraph at lines 7347--7347 []|[][]\T1/txtt/m/sl/10 get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, Underfull \hbox (badness 10000) in paragraph at lines 7347--7347 []|[][]\T1/txtt/m/sl/10 get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, [60] [61] [62] Underfull \hbox (badness 10000) in paragraph at lines 7770--7770 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, Underfull \hbox (badness 10000) in paragraph at lines 7770--7770 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, [63] [64] [65] Underfull \hbox (badness 10000) in paragraph at lines 8181--8181 []|[][]\T1/txtt/m/sl/10 get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, Underfull \hbox (badness 10000) in paragraph at lines 8181--8181 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, Underfull \hbox (badness 10000) in paragraph at lines 8181--8181 []|[][]\T1/txtt/m/sl/10 get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, Underfull \hbox (badness 10000) in paragraph at lines 8181--8181 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, [66] [67] [68] [69] [70] [71] [72] Underfull \hbox (badness 10000) in paragraph at lines 9292--9292 []|[][]\T1/txtt/m/sl/10 inspect_histogram[][]\T1/qtm/m/n/10 (arr[, arr_dark, ma sk, ex- Underfull \hbox (badness 10000) in paragraph at lines 9292--9292 []|[][]\T1/txtt/m/sl/10 compute_flat_field_correction[][]\T1/qtm/m/n/10 (rois, params[, Underfull \hbox (badness 7362) in paragraph at lines 9292--9292 []|[][]\T1/txtt/m/sl/10 process[][]\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, mask, Underfull \hbox (badness 10000) in paragraph at lines 9292--9292 []|[][]\T1/txtt/m/sl/10 inspect_histogram[][]\T1/qtm/m/n/10 (arr[, arr_dark, ma sk, ex- Underfull \hbox (badness 10000) in paragraph at lines 9292--9292 []|[][]\T1/txtt/m/sl/10 compute_flat_field_correction[][]\T1/qtm/m/n/10 (rois, params[, Underfull \hbox (badness 7362) in paragraph at lines 9292--9292 []|[][]\T1/txtt/m/sl/10 process[][]\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, mask, [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] Underfull \hbox (badness 10000) in paragraph at lines 10646--10648 []|[][]\T1/txtt/m/sl/10 inspect_histogram[][]\T1/qtm/m/n/10 (arr[, arr_dark, ma sk, ex- Underfull \hbox (badness 10000) in paragraph at lines 10674--10676 []|[][]\T1/txtt/m/sl/10 compute_flat_field_correction[][]\T1/qtm/m/n/10 (rois, params[, Underfull \hbox (badness 7362) in paragraph at lines 10800--10802 []|[][]\T1/txtt/m/sl/10 process[][]\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, mask, [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] Underfull \hbox (badness 5970) in paragraph at lines 13966--13969 []\T1/txtt/bx/n/10 extract_bam \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 bool\T1/qtm/m/n /10 ) ^^U If True, ex-tracts the val-ues from BAM vari-ables (e.g. [107] [108] [109] [110] Underfull \hbox (badness 10000) in paragraph at lines 14483--14485 []|[][]\T1/txtt/m/sl/10 check_peak_params[][]\T1/qtm/m/n/10 (run, mnemonic[, ra w_trace, Underfull \hbox (badness 10000) in paragraph at lines 14490--14492 []|[][]\T1/txtt/m/sl/10 get_digitizer_peaks[][]\T1/qtm/m/n/10 (run[, mnemon-ics , Underfull \hbox (badness 10000) in paragraph at lines 14567--14569 []|[][]\T1/txtt/m/sl/10 get_xgm_formatted[][]\T1/qtm/m/n/10 (run_obj, xgm_name, Underfull \hbox (badness 10000) in paragraph at lines 14595--14597 []|[][]\T1/txtt/m/sl/10 process_dssc_data[][]\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, Underfull \hbox (badness 10000) in paragraph at lines 14623--14625 []|[][]\T1/txtt/m/sl/10 get_xgm[][]\T1/qtm/m/n/10 (run[, mnemon-ics, merge_with , in-dices, Underfull \hbox (badness 10000) in paragraph at lines 14686--14688 []|[][]\T1/txtt/m/sl/10 get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, [111] Underfull \hbox (badness 10000) in paragraph at lines 14763--14765 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, Underfull \hbox (badness 10000) in paragraph at lines 14833--14835 []|[][]\T1/txtt/m/sl/10 inspect_histogram[][]\T1/qtm/m/n/10 (arr[, arr_dark, ma sk, ex- Underfull \hbox (badness 10000) in paragraph at lines 14861--14863 []|[][]\T1/txtt/m/sl/10 compute_flat_field_correction[][]\T1/qtm/m/n/10 (rois, params[, [112] Underfull \hbox (badness 7362) in paragraph at lines 14987--14989 []|[][]\T1/txtt/m/sl/10 process[][]\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, mask, [113] [114] [115] [116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] Underfull \hbox (badness 5970) in paragraph at lines 17478--17481 []\T1/txtt/bx/n/10 extract_bam \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 bool\T1/qtm/m/n /10 ) ^^U If True, ex-tracts the val-ues from BAM vari-ables (e.g. [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] Chapter 5. [151] [152] Underfull \hbox (badness 10000) in paragraph at lines 19731--19732 []\T1/txtt/m/n/10 toolbox_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 , [153] (./scs-toolbox.ind [154] Overfull \hbox (82.43233pt too wide) in paragraph at lines 18--20 []\T1/txtt/m/n/10 __call__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/txtt/m/n/10 __del__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/txtt/m/n/10 __del__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 27--29 []\T1/txtt/m/n/10 __str__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.boz.parameters Underfull \hbox (badness 5519) in paragraph at lines 29--30 []\T1/txtt/m/n/10 __str__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 31--33 []\T1/txtt/m/n/10 _bin_metadata() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. detectors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 33--35 []\T1/txtt/m/n/10 _bin_metadata() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 33--35 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 37--39 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 37--39 \T1/qtm/m/it/10 box_scs.AzimuthalIntegratorDSSC method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 39--41 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 39--41 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 41--43 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 41--43 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegratorDSSC Underfull \hbox (badness 10000) in paragraph at lines 43--45 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (49.47249pt too wide) in paragraph at lines 43--45 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 45--47 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (73.36249pt too wide) in paragraph at lines 45--47 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegratorDSSC Underfull \hbox (badness 10000) in paragraph at lines 47--49 []\T1/txtt/m/n/10 _calc_indices() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 49--51 []\T1/txtt/m/n/10 _calc_indices() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 49--51 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 51--53 []\T1/txtt/m/n/10 _calc_indices() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (49.47249pt too wide) in paragraph at lines 51--53 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 55--57 []\T1/txtt/m/n/10 _calc_polar_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 55--57 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 57--59 []\T1/txtt/m/n/10 _calc_polar_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (49.47249pt too wide) in paragraph at lines 57--59 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 61--63 []\T1/txtt/m/n/10 _with_values() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule too l- Underfull \hbox (badness 10000) in paragraph at lines 66--68 []\T1/txtt/m/n/10 add_attributes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 66--68 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 68--70 []\T1/txtt/m/n/10 add_attributes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 68--70 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 70--71 []\T1/txtt/m/n/10 add_attributes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 73--74 []\T1/txtt/m/n/10 add_binner() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 75--77 []\T1/txtt/m/n/10 add_dataArray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 75--77 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter [155] Underfull \hbox (badness 10000) in paragraph at lines 77--79 []\T1/txtt/m/n/10 add_dataArray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 77--79 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 79--80 []\T1/txtt/m/n/10 add_dataArray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 81--82 []\T1/txtt/m/n/10 aggregate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 5475) in paragraph at lines 83--84 []\T1/txtt/m/n/10 aggregator() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 84--85 []\T1/txtt/m/n/10 aggregator() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 87--89 []\T1/txtt/m/n/10 aggregators \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS at- Underfull \hbox (badness 10000) in paragraph at lines 92--94 []\T1/txtt/m/n/10 align_ol_to_fel_pId() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 96--97 []\T1/txtt/m/n/10 average_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 101--103 []\T1/txtt/m/n/10 AzimuthalIntegrator \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in tool- Underfull \hbox (badness 10000) in paragraph at lines 101--103 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 104--106 []\T1/txtt/m/n/10 AzimuthalIntegratorDSSC \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in tool- Underfull \hbox (badness 10000) in paragraph at lines 106--108 []\T1/txtt/m/n/10 AzimuthalIntegratorDSSC \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in tool- Underfull \hbox (badness 10000) in paragraph at lines 106--108 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 114--115 []\T1/txtt/m/n/10 binning() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 121--122 []\T1/txtt/m/n/10 calc_q() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.Azimuth alIntegrator method\T1/qtm/m/n/10 ), Overfull \hbox (71.93236pt too wide) in paragraph at lines 122--124 []\T1/txtt/m/n/10 calc_q() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detecto rs.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 124--126 []\T1/txtt/m/n/10 calc_q() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detecto rs.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 128--129 []\T1/txtt/m/n/10 calibrate_xgm() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Underfull \hbox (badness 10000) in paragraph at lines 130--131 []\T1/txtt/m/n/10 centroid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 133--135 []\T1/txtt/m/n/10 centroid_one() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 137--138 []\T1/txtt/m/n/10 check_peak_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 138--140 []\T1/txtt/m/n/10 check_peak_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 140--142 []\T1/txtt/m/n/10 cleanup_tmp_dir() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 142--144 []\T1/txtt/m/n/10 collect_fastccd_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 142--144 \T1/qtm/m/it/10 box_scs.detectors.fccd.FastCCD method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 144--146 []\T1/txtt/m/n/10 combine_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 144--146 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 146--148 []\T1/txtt/m/n/10 combine_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 146--148 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 148--149 []\T1/txtt/m/n/10 combine_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 158--159 []\T1/txtt/m/n/10 create_dssc_bins() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 159--161 []\T1/txtt/m/n/10 create_dssc_bins() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 161--163 []\T1/txtt/m/n/10 create_pulsemask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 161--163 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 163--165 []\T1/txtt/m/n/10 create_pulsemask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 163--165 \T1/qtm/m/it/10 box_scs.detectors.DSSCBinner method\T1/qtm/m/n/10 ), [156] Underfull \hbox (badness 10000) in paragraph at lines 165--166 []\T1/txtt/m/n/10 create_pulsemask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_s cs.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 177--179 []\T1/txtt/m/n/10 dask_load_persistently() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool - Underfull \hbox (badness 10000) in paragraph at lines 177--179 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 179--181 []\T1/txtt/m/n/10 dask_load_persistently() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool - Underfull \hbox (badness 10000) in paragraph at lines 181--183 []\T1/txtt/m/n/10 define_scan() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.de tectors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 185--187 []\T1/txtt/m/n/10 degToRelPower() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Underfull \hbox (badness 10000) in paragraph at lines 189--191 []\T1/txtt/m/n/10 delayToPosition() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 206--208 []\T1/txtt/m/n/10 ENERGY_INTERCEPT \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .detectors.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 212--214 []\T1/txtt/m/n/10 ENERGY_SLOPE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 217--219 []\T1/txtt/m/n/10 extractBunchPattern() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 225--226 []\T1/txtt/m/n/10 ff_refine_crit() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 233--234 []\T1/txtt/m/n/10 find_curvature() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .detectors.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 241--243 []\T1/txtt/m/n/10 find_rois_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 243--245 []\T1/txtt/m/n/10 find_rois_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 247--248 []\T1/txtt/m/n/10 flat_field_guess() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_s cs.parameters Underfull \hbox (badness 10000) in paragraph at lines 248--250 []\T1/txtt/m/n/10 flat_field_guess() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 248--250 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 254--256 []\T1/txtt/m/n/10 fluenceCalibration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 257--258 []\T1/txtt/m/n/10 from_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.hrixs.hRIXS [157] Underfull \hbox (badness 10000) in paragraph at lines 266--268 []\T1/txtt/m/n/10 get_bam() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 270--272 []\T1/txtt/m/n/10 get_bam_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 273--275 []\T1/txtt/m/n/10 get_data_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 275--277 []\T1/txtt/m/n/10 get_data_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 278--280 []\T1/txtt/m/n/10 get_dig_avg_trace() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 280--282 []\T1/txtt/m/n/10 get_dig_avg_trace() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 283--285 []\T1/txtt/m/n/10 get_digitizer_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 285--287 []\T1/txtt/m/n/10 get_digitizer_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 288--290 []\T1/txtt/m/n/10 get_flat_field() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 288--290 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 290--292 []\T1/txtt/m/n/10 get_flat_field() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .routines.parameters Underfull \hbox (badness 10000) in paragraph at lines 293--294 []\T1/txtt/m/n/10 get_Fnl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.boz.parameters Underfull \hbox (badness 5519) in paragraph at lines 294--295 []\T1/txtt/m/n/10 get_Fnl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 295--297 []\T1/txtt/m/n/10 get_info() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 297--298 []\T1/txtt/m/n/10 get_info() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 301--303 []\T1/txtt/m/n/10 get_laser_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 304--306 []\T1/txtt/m/n/10 get_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routi nes.boz.parameters Underfull \hbox (badness 6220) in paragraph at lines 308--310 []\T1/txtt/m/n/10 get_mask_idx() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.r outines.boz.parameters Underfull \hbox (badness 10000) in paragraph at lines 310--312 []\T1/txtt/m/n/10 get_mask_idx() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.r outines.parameters Underfull \hbox (badness 5475) in paragraph at lines 312--313 []\T1/txtt/m/n/10 get_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 313--315 []\T1/txtt/m/n/10 get_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 318--320 []\T1/txtt/m/n/10 get_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 322--324 []\T1/txtt/m/n/10 get_pes_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 328--329 []\T1/txtt/m/n/10 get_roi_pixel_pos() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 329--331 []\T1/txtt/m/n/10 get_roi_pixel_pos() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 333--335 []\T1/txtt/m/n/10 get_sase_pId() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule too l- Underfull \hbox (badness 10000) in paragraph at lines 335--337 []\T1/txtt/m/n/10 get_tim_binned() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 335--337 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 342--344 []\T1/txtt/m/n/10 get_tim_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Underfull \hbox (badness 10000) in paragraph at lines 345--346 []\T1/txtt/m/n/10 get_undulator_config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- Underfull \hbox (badness 10000) in paragraph at lines 346--348 []\T1/txtt/m/n/10 get_undulator_config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- [158] Underfull \hbox (badness 10000) in paragraph at lines 352--354 []\T1/txtt/m/n/10 get_xgm_binned() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 352--354 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 358--359 []\T1/txtt/m/n/10 get_xgm_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 359--361 []\T1/txtt/m/n/10 get_xgm_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 366--368 []\T1/txtt/m/n/10 histogram_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 375--376 []\T1/txtt/m/n/10 inspect_correction() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 376--378 []\T1/txtt/m/n/10 inspect_correction() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 381--382 []\T1/txtt/m/n/10 inspect_flat_field_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 382--384 []\T1/txtt/m/n/10 inspect_flat_field_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 384--386 []\T1/txtt/m/n/10 inspect_flat_field_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 390--391 []\T1/txtt/m/n/10 inspect_histogram() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 391--393 []\T1/txtt/m/n/10 inspect_histogram() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 395--396 []\T1/txtt/m/n/10 inspect_nl_fit() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 397--399 []\T1/txtt/m/n/10 inspect_plane_fitting() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 399--401 []\T1/txtt/m/n/10 inspect_plane_fitting() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 405--406 []\T1/txtt/m/n/10 inspect_saturation() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 406--408 []\T1/txtt/m/n/10 inspect_saturation() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 409--410 []\T1/txtt/m/n/10 integrate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 413--415 []\T1/txtt/m/n/10 is_ppl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 417--419 []\T1/txtt/m/n/10 is_pulse_at() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 421--423 []\T1/txtt/m/n/10 is_sase_1() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 425--427 []\T1/txtt/m/n/10 is_sase_3() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 434--436 []\T1/txtt/m/n/10 knife_edge() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 437--439 []\T1/txtt/m/n/10 knife_edge_base() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 442--444 []\T1/txtt/m/n/10 list_suites() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 445--447 []\T1/txtt/m/n/10 list_suites() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - [159] Underfull \hbox (badness 10000) in paragraph at lines 452--454 []\T1/txtt/m/n/10 load() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routines. boz.parameters class Underfull \hbox (badness 10000) in paragraph at lines 455--457 []\T1/txtt/m/n/10 load_binned() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.de tectors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 458--459 []\T1/txtt/m/n/10 load_dark() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 462--464 []\T1/txtt/m/n/10 load_dssc_info() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 466--468 []\T1/txtt/m/n/10 load_dssc_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 468--470 []\T1/txtt/m/n/10 load_gain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 472--474 []\T1/txtt/m/n/10 load_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 474--476 []\T1/txtt/m/n/10 load_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 478--480 []\T1/txtt/m/n/10 load_tim() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 480--481 []\T1/txtt/m/n/10 load_tim() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 484--486 []\T1/txtt/m/n/10 load_xarray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 486--488 []\T1/txtt/m/n/10 load_xgm() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 488--489 []\T1/txtt/m/n/10 load_xgm() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 505--507 []\T1/txtt/m/n/10 mnemonics_for_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 512--513 []| \T1/txtt/m/n/10 toolbox_scs.base.tests.test_knife_edge\T1/qtm/m/n/10 , Overfull \hbox (13.12186pt too wide) in paragraph at lines 515--516 []| \T1/txtt/m/n/10 toolbox_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 530--531 []| \T1/txtt/m/n/10 toolbox_scs.misc.bunch_pattern_external\T1/qtm/m/n/10 , [160] Underfull \hbox (badness 10000) in paragraph at lines 564--565 []\T1/txtt/m/n/10 normalize() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 568--570 []\T1/txtt/m/n/10 npulses_has_changed() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 575--576 []\T1/txtt/m/n/10 open_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 580--581 []\T1/txtt/m/n/10 parabola() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 593--595 []\T1/txtt/m/n/10 plane_fitting_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- Underfull \hbox (badness 10000) in paragraph at lines 595--597 []\T1/txtt/m/n/10 plane_fitting_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- Underfull \hbox (badness 10000) in paragraph at lines 597--599 []\T1/txtt/m/n/10 plot_azimuthal_int() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 597--599 \T1/qtm/m/it/10 box_scs.detectors.fccd.FastCCD method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 599--601 []\T1/txtt/m/n/10 plot_azimuthal_line_cut() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 too l- Underfull \hbox (badness 10000) in paragraph at lines 599--601 \T1/qtm/m/it/10 box_scs.detectors.fccd.FastCCD method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 601--603 []\T1/txtt/m/n/10 plot_binner() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 603--605 []\T1/txtt/m/n/10 plot_binner_hist() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 605--607 []\T1/txtt/m/n/10 plot_FastCCD() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 607--609 []\T1/txtt/m/n/10 plot_hist_processed() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 609--611 []\T1/txtt/m/n/10 plot_scan() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 613--615 []\T1/txtt/m/n/10 plot_xgm_threshold() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 617--619 []\T1/txtt/m/n/10 positionToDelay() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 622--624 []\T1/txtt/m/n/10 process_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 622--624 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 624--626 []\T1/txtt/m/n/10 process_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 626--627 []\T1/txtt/m/n/10 process_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.D SSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 628--629 []\T1/txtt/m/n/10 process_dssc_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 629--631 []\T1/txtt/m/n/10 process_dssc_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 633--634 []\T1/txtt/m/n/10 process_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 634--636 []\T1/txtt/m/n/10 process_one_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 643--645 []\T1/txtt/m/n/10 pulsePatternInfo() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- [161] Underfull \hbox (badness 10000) in paragraph at lines 649--651 []\T1/txtt/m/n/10 quickmask_DSSC_ASIC() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 651--653 []\T1/txtt/m/n/10 quickmask_DSSC_ASIC() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 658--660 []\T1/txtt/m/n/10 reflectivity() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule too l- Underfull \hbox (badness 6188) in paragraph at lines 669--670 []\T1/txtt/m/n/10 save() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detectors .fccd.FastCCD method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 674--676 []\T1/txtt/m/n/10 save_attributes_h5() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 676--678 []\T1/txtt/m/n/10 save_attributes_h5() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 678--680 []\T1/txtt/m/n/10 save_formatted_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 678--680 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 680--682 []\T1/txtt/m/n/10 save_formatted_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 680--682 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 686--688 []\T1/txtt/m/n/10 save_xarray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 689--691 []\T1/txtt/m/n/10 set_flat_field() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 689--691 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 691--693 []\T1/txtt/m/n/10 set_flat_field() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .routines.parameters Underfull \hbox (badness 10000) in paragraph at lines 694--695 []\T1/txtt/m/n/10 set_Fnl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.boz.parameters Underfull \hbox (badness 5519) in paragraph at lines 695--696 []\T1/txtt/m/n/10 set_Fnl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 697--699 []\T1/txtt/m/n/10 set_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routi nes.boz.parameters Underfull \hbox (badness 5475) in paragraph at lines 700--701 []\T1/txtt/m/n/10 set_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 701--703 []\T1/txtt/m/n/10 set_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 704--706 []\T1/txtt/m/n/10 setUp() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.test.tes t_misc.TestDataAccess Underfull \hbox (badness 10000) in paragraph at lines 706--708 []\T1/txtt/m/n/10 setUp() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.test.tes t_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 708--710 []\T1/txtt/m/n/10 setUp() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.test.tes t_utils.TestDataAccess Underfull \hbox (badness 10000) in paragraph at lines 710--712 []\T1/txtt/m/n/10 setup_tmp_dir() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Overfull \hbox (5.7323pt too wide) in paragraph at lines 714--716 []\T1/txtt/m/n/10 setUpClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.tes t.test_misc.TestDataAccess Overfull \hbox (8.28223pt too wide) in paragraph at lines 716--718 []\T1/txtt/m/n/10 setUpClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.tes t.test_top_level.TestToolbox Overfull \hbox (4.6323pt too wide) in paragraph at lines 718--720 []\T1/txtt/m/n/10 setUpClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.tes t.test_utils.TestDataAccess Underfull \hbox (badness 6526) in paragraph at lines 744--746 []\T1/txtt/m/n/10 tearDown() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.test. test_utils.TestDataAccess Underfull \hbox (badness 10000) in paragraph at lines 746--748 []\T1/txtt/m/n/10 tearDownClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 746--748 \T1/qtm/m/it/10 box_scs.test.test_dssc_cls.TestDSSC class [162] Underfull \hbox (badness 10000) in paragraph at lines 748--750 []\T1/txtt/m/n/10 tearDownClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 748--750 \T1/qtm/m/it/10 box_scs.test.test_misc.TestDataAccess class Underfull \hbox (badness 10000) in paragraph at lines 750--752 []\T1/txtt/m/n/10 tearDownClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 750--752 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox class Underfull \hbox (badness 10000) in paragraph at lines 752--754 []\T1/txtt/m/n/10 tearDownClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 752--754 \T1/qtm/m/it/10 box_scs.test.test_utils.TestDataAccess class Underfull \hbox (badness 10000) in paragraph at lines 754--756 []\T1/txtt/m/n/10 test_centroid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 754--756 \T1/qtm/m/it/10 box_scs.test.test_hrixs.TestHRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 756--758 []\T1/txtt/m/n/10 test_constant() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 756--758 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox Overfull \hbox (2.86227pt too wide) in paragraph at lines 758--760 []\T1/txtt/m/n/10 test_create() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.te st.test_dssc_cls.TestDSSC Underfull \hbox (badness 10000) in paragraph at lines 760--762 []\T1/txtt/m/n/10 test_extractBunchPattern() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 to ol- Underfull \hbox (badness 10000) in paragraph at lines 762--764 []\T1/txtt/m/n/10 test_getparam() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 762--764 \T1/qtm/m/it/10 box_scs.test.test_hrixs.TestHRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 764--766 []\T1/txtt/m/n/10 test_integration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 764--766 \T1/qtm/m/it/10 box_scs.test.test_hrixs.TestHRIXS method\T1/qtm/m/n/10 ), Overfull \hbox (5.7323pt too wide) in paragraph at lines 766--768 []\T1/txtt/m/n/10 test_isppl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.tes t.test_misc.TestDataAccess Underfull \hbox (badness 10000) in paragraph at lines 768--770 []\T1/txtt/m/n/10 test_issase1() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 770--772 []\T1/txtt/m/n/10 test_issase3() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 772--774 []\T1/txtt/m/n/10 test_knife_edge_base() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- Overfull \hbox (3.03224pt too wide) in paragraph at lines 774--776 []\T1/txtt/m/n/10 test_load() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.test .test_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 776--778 []\T1/txtt/m/n/10 test_loadbinnedarray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 776--778 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 778--780 []\T1/txtt/m/n/10 test_normalization_all() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool - Underfull \hbox (badness 10000) in paragraph at lines 778--780 \T1/qtm/m/it/10 box_scs.test.test_dssc_cls.TestDSSC method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 780--782 []\T1/txtt/m/n/10 test_openrun() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 780--782 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 782--784 []\T1/txtt/m/n/10 test_openrunpath() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 782--784 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 784--786 []\T1/txtt/m/n/10 test_prepare_arrays_nans() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 786--788 []\T1/txtt/m/n/10 test_prepare_arrays_range() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 788--790 []\T1/txtt/m/n/10 test_prepare_arrays_size() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 790--792 []\T1/txtt/m/n/10 test_processing_quick() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 790--792 \T1/qtm/m/it/10 box_scs.test.test_dssc_cls.TestDSSC method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 792--794 []\T1/txtt/m/n/10 test_pulsePatternInfo() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 794--796 []\T1/txtt/m/n/10 test_range_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 796--798 []\T1/txtt/m/n/10 test_rundir1() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 798--800 []\T1/txtt/m/n/10 test_rundir2() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 800--802 []\T1/txtt/m/n/10 test_rundir3() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 802--804 []\T1/txtt/m/n/10 test_use_xgm_tim() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 802--804 \T1/qtm/m/it/10 box_scs.test.test_dssc_cls.TestDSSC method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 811--813 []\T1/txtt/m/n/10 THRESHOLD \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.hrixs.hRIXS at- [163] Underfull \hbox (badness 10000) in paragraph at lines 918--920 []\T1/txtt/m/n/10 xgm_filter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.fccd.FastCCD [164]) (./scs-toolbox.aux) ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}{ /usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on scs-toolbox.pdf (168 pages, 693718 bytes). Transcript written on scs-toolbox.log. Latexmk: Index file 'scs-toolbox.idx' was written Latexmk: Log file says output to 'scs-toolbox.pdf' Latexmk: All targets (scs-toolbox.pdf) are up-to-date [rtd-command-info] start-time: 2023-01-16T10:37:28.448408Z, end-time: 2023-01-16T10:37:28.546058Z, duration: 0, exit-code: 0 mv -f /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/docs-build-test/doc/_build/latex/scs-toolbox.pdf /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/artifacts/docs-build-test/sphinx_pdf/scs-toolbox.pdf