Read the Docs build information
Build id: 25736
Project: european-xfel-offline-calibration
Version: doc-mkdocs_new_documentations
Commit: 886fe41388513410812c21f184f62b13ba78c42e
Date: 2023-03-21T09:01:45.590614Z
State: finished
Success: False


[rtd-command-info] start-time: 2023-03-21T09:01:46.644744Z, end-time: 2023-03-21T09:02:04.221795Z, duration: 17, exit-code: 0
git clone --no-single-branch --depth 50 http://git.xfel.eu/calibration/pycalibration .
Cloning into '.'...
warning: redirecting to https://git.xfel.eu/calibration/pycalibration.git/

[rtd-command-info] start-time: 2023-03-21T09:02:04.524800Z, end-time: 2023-03-21T09:02:04.848470Z, duration: 0, exit-code: 0
git checkout --force origin/doc/mkdocs_new_documentations
Note: checking out 'origin/doc/mkdocs_new_documentations'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 886fe413 remove conf file

[rtd-command-info] start-time: 2023-03-21T09:02:04.933607Z, end-time: 2023-03-21T09:02:04.994008Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2023-03-21T09:02:06.493858Z, end-time: 2023-03-21T09:02:11.547128Z, duration: 5, exit-code: 0
python3.8 -mvirtualenv /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations
Using base prefix '/home/docs/.pyenv/versions/3.8.0'
New python executable in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/bin/python3.8
Also creating executable in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2023-03-21T09:02:11.633064Z, end-time: 2023-03-21T09:02:12.596505Z, duration: 0, exit-code: 0
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/bin/python -m pip install --upgrade --no-cache-dir pip
Requirement already satisfied: pip in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages (23.0.1)

[rtd-command-info] start-time: 2023-03-21T09:02:12.682031Z, end-time: 2023-03-21T09:02:37.314460Z, duration: 24, exit-code: 0
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/bin/python -m pip install --upgrade --no-cache-dir jinja2==2.11.3 markupsafe==2.0.1 Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1
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Building wheels for collected packages: mock, pillow, future
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  Building wheel for pillow (setup.py): started
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  Created wheel for future: filename=future-0.18.3-py3-none-any.whl size=492022 sha256=589b5c2c5b38824f162f520b31fe4f9c3173f5aae5e82ed4ea908aa6dedcd6b3
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Successfully built mock pillow future
Installing collected packages: snowballstemmer, pytz, Pygments, mock, docutils, urllib3, sphinxcontrib-serializinghtml, six, setuptools, pillow, packaging, markupsafe, imagesize, idna, future, charset-normalizer, certifi, babel, alabaster, sphinxcontrib-websupport, requests, jinja2, commonmark, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark
  Attempting uninstall: setuptools
    Found existing installation: setuptools 67.6.0
    Uninstalling setuptools-67.6.0:
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Successfully installed Pygments-2.3.1 alabaster-0.7.13 babel-2.12.1 certifi-2022.12.7 charset-normalizer-3.1.0 commonmark-0.8.1 docutils-0.14 future-0.18.3 idna-3.4 imagesize-1.4.1 jinja2-2.11.3 markupsafe-2.0.1 mock-1.0.1 packaging-23.0 pillow-5.4.1 pytz-2022.7.1 readthedocs-sphinx-ext-1.0.4 recommonmark-0.5.0 requests-2.28.2 setuptools-41.0.1 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.15

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[rtd-command-info] start-time: 2023-03-21T09:02:46.663955Z, end-time: 2023-03-21T09:03:49.641665Z, duration: 62, exit-code: 0
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/bin/python -m pip install --upgrade --upgrade-strategy eager --no-cache-dir .[docs]
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Requirement already satisfied: zipp>=0.5 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages (from importlib-metadata>=4.3->mkdocs>=1.0.3->mkdocs-literate-nav->European-XFEL-Offline-Calibration==1.0) (3.15.0)
Collecting cffi>=1.0.1
  Downloading cffi-1.15.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (442 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 442.7/442.7 kB 213.3 MB/s eta 0:00:00
Collecting pycparser
  Downloading pycparser-2.21-py2.py3-none-any.whl (118 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 118.7/118.7 kB 174.3 MB/s eta 0:00:00
Building wheels for collected packages: dill, prettytable, pypandoc, pyyaml, sharedmem, tabulate, European-XFEL-Offline-Calibration
  Building wheel for dill (setup.py): started
  Building wheel for dill (setup.py): finished with status 'done'
  Created wheel for dill: filename=dill-0.3.0-py3-none-any.whl size=77512 sha256=edc0e3539d7d31477dfa00388e3074215a311281e1a3fd98f30ec993044b7720
  Stored in directory: /tmp/pip-ephem-wheel-cache-72a6ym32/wheels/ec/e7/fb/9b59e2dbda9eeefab51f7cb41df434ff463c4afe1985abff24
  Building wheel for prettytable (setup.py): started
  Building wheel for prettytable (setup.py): finished with status 'done'
  Created wheel for prettytable: filename=prettytable-0.7.2-py3-none-any.whl size=13699 sha256=bc07955a96be330aeae792ee4d2707b24f528ef37d1ef12bd99883e4182d6478
  Stored in directory: /tmp/pip-ephem-wheel-cache-72a6ym32/wheels/48/6d/77/9517cb933af254f51a446f1a5ec9c2be3e45f17384940bce68
  Building wheel for pypandoc (setup.py): started
  Building wheel for pypandoc (setup.py): finished with status 'done'
  Created wheel for pypandoc: filename=pypandoc-1.4-py3-none-any.whl size=16716 sha256=0ef1003b1b3878e617ecbbbbf0a5347cbac0009b155b35dc58c6bd1172cb4bb2
  Stored in directory: /tmp/pip-ephem-wheel-cache-72a6ym32/wheels/f7/d9/a0/ef1fe56c058e41d6271a4935caaeae89d43e2280504690a329
  Building wheel for pyyaml (setup.py): started
  Building wheel for pyyaml (setup.py): finished with status 'done'
  Created wheel for pyyaml: filename=PyYAML-5.3-cp38-cp38-linux_x86_64.whl size=44227 sha256=36dbe4fbeef366393be8a0019defbe48ff538e43743dea413b37449f98217158
  Stored in directory: /tmp/pip-ephem-wheel-cache-72a6ym32/wheels/e4/94/ec/65e430f66fda7a86c08f61ce59455581adc269a65881b4ffeb
  Building wheel for sharedmem (setup.py): started
  Building wheel for sharedmem (setup.py): finished with status 'done'
  Created wheel for sharedmem: filename=sharedmem-0.3.8-py3-none-any.whl size=18342 sha256=efca7f76d28e424d779bc0b319ba420891192e82e3a936c4bfa2f5b195d155af
  Stored in directory: /tmp/pip-ephem-wheel-cache-72a6ym32/wheels/ee/ef/25/9562dc56f11d2b55824c1b1547eff68b75f1a0117d3b0867dd
  Building wheel for tabulate (setup.py): started
  Building wheel for tabulate (setup.py): finished with status 'done'
  Created wheel for tabulate: filename=tabulate-0.8.6-py3-none-any.whl size=23273 sha256=48fae0df3ab7b50fe15c4bf09570bed16427221db6ea0a1296da00272d51b154
  Stored in directory: /tmp/pip-ephem-wheel-cache-72a6ym32/wheels/86/8c/d9/3b6c2f55efaefe656c52b725d2fdc5669085c83444979db8b3
  Building wheel for European-XFEL-Offline-Calibration (pyproject.toml): started
  Building wheel for European-XFEL-Offline-Calibration (pyproject.toml): finished with status 'done'
  Created wheel for European-XFEL-Offline-Calibration: filename=European_XFEL_Offline_Calibration-1.0-cp38-cp38-linux_x86_64.whl size=1598721 sha256=7db9265b983575c784f7a9e1aba50f4363b27fd3a156e08e6c8568a8a5c6c4db
  Stored in directory: /tmp/pip-ephem-wheel-cache-72a6ym32/wheels/1d/8e/2b/dcedca7f2ac9a173c60e54d723e1d361570bb0c374714b3976
Successfully built dill prettytable pypandoc pyyaml sharedmem tabulate European-XFEL-Offline-Calibration
Installing collected packages: webencodings, wcwidth, tabulate, Send2Trash, ptyprocess, prettytable, pickleshare, mistune, kafka-python, ipython-genutils, env-cache, dynaconf, chardet, backcall, urllib3, tornado, testpath, smmap, setuptools, pyzmq, pyyaml, pyrsistent, pyparsing, pycparser, prompt-toolkit, prometheus-client, pkgutil-resolve-name, pillow, pexpect, parso, pandocfilters, oauthlib, numpy, nest-asyncio, mypy-extensions, lxml, kiwisolver, joblib, Jinja2, importlib-resources, idna, entrypoints, docutils, dill, defusedxml, decorator, Cython, cycler, bleach, attrs, async-generator, astcheck, traitlets, terminado, sharedmem, scipy, requests, pypandoc, pasha, pandas, matplotlib, jsonschema, jedi, iminuit, h5py, gitdb, euxfel-bunch-pattern, cffi, xarray, sphinx, scikit-learn, requests-oauthlib, jupyter-core, ipython, gitpython, cfelpyutils, argon2-cffi-bindings, oauth2-xfel-client, nbformat, jupyter-client, extra-geom, extra-data, argon2-cffi, nbconvert, nbclient, metadata-client, ipykernel, EXtra-redu, calibration-client, princess, notebook, nbsphinx, nbparameterise, jupyter-console, ipyparallel, European-XFEL-Offline-Calibration
  Attempting uninstall: urllib3
    Found existing installation: urllib3 1.26.15
    Uninstalling urllib3-1.26.15:
      Successfully uninstalled urllib3-1.26.15
  Attempting uninstall: setuptools
    Found existing installation: setuptools 41.0.1
    Uninstalling setuptools-41.0.1:
      Successfully uninstalled setuptools-41.0.1
  Attempting uninstall: pyyaml
    Found existing installation: PyYAML 6.0
    Uninstalling PyYAML-6.0:
      Successfully uninstalled PyYAML-6.0
  Attempting uninstall: pillow
    Found existing installation: Pillow 5.4.1
    Uninstalling Pillow-5.4.1:
      Successfully uninstalled Pillow-5.4.1
  Attempting uninstall: Jinja2
    Found existing installation: Jinja2 3.1.2
    Uninstalling Jinja2-3.1.2:
      Successfully uninstalled Jinja2-3.1.2
  Attempting uninstall: idna
    Found existing installation: idna 3.4
    Uninstalling idna-3.4:
      Successfully uninstalled idna-3.4
  Attempting uninstall: docutils
    Found existing installation: docutils 0.14
    Uninstalling docutils-0.14:
      Successfully uninstalled docutils-0.14
  Attempting uninstall: requests
    Found existing installation: requests 2.28.2
    Uninstalling requests-2.28.2:
      Successfully uninstalled requests-2.28.2
  Attempting uninstall: sphinx
    Found existing installation: Sphinx 1.8.6
    Uninstalling Sphinx-1.8.6:
      Successfully uninstalled Sphinx-1.8.6
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
mkdocs-material 9.1.3 requires jinja2>=3.0, but you have jinja2 2.11.2 which is incompatible.
mkdocs-material 9.1.3 requires requests>=2.26, but you have requests 2.22.0 which is incompatible.
Successfully installed Cython-0.29.21 EXtra-redu-0.0.7 European-XFEL-Offline-Calibration-1.0 Jinja2-2.11.2 Send2Trash-1.8.0 argon2-cffi-21.3.0 argon2-cffi-bindings-21.2.0 astcheck-0.3.0 async-generator-1.10 attrs-22.2.0 backcall-0.2.0 bleach-6.0.0 calibration-client-11.2.0 cfelpyutils-2.0.6 cffi-1.15.1 chardet-3.0.4 cycler-0.11.0 decorator-5.1.1 defusedxml-0.7.1 dill-0.3.0 docutils-0.17.1 dynaconf-3.1.4 entrypoints-0.4 env-cache-0.1 euxfel-bunch-pattern-0.6 extra-data-1.12.0 extra-geom-1.8.0 gitdb-4.0.10 gitpython-3.1.0 h5py-3.5.0 idna-2.8 iminuit-1.3.8 importlib-resources-5.12.0 ipykernel-5.1.4 ipyparallel-6.2.4 ipython-7.12.0 ipython-genutils-0.2.0 jedi-0.18.2 joblib-1.2.0 jsonschema-4.17.3 jupyter-client-7.3.4 jupyter-console-6.1.0 jupyter-core-4.10.0 kafka-python-2.0.2 kiwisolver-1.4.4 lxml-4.5.0 matplotlib-3.4.2 metadata-client-3.0.8 mistune-0.8.4 mypy-extensions-1.0.0 nbclient-0.5.1 nbconvert-5.6.1 nbformat-5.0.7 nbparameterise-0.6 nbsphinx-0.8.8 nest-asyncio-1.5.6 notebook-6.1.5 numpy-1.20.3 oauth2-xfel-client-6.1.1 oauthlib-3.2.2 pandas-1.5.3 pandocfilters-1.5.0 parso-0.8.3 pasha-0.1.1 pexpect-4.8.0 pickleshare-0.7.5 pillow-9.4.0 pkgutil-resolve-name-1.3.10 prettytable-0.7.2 princess-0.5 prometheus-client-0.16.0 prompt-toolkit-3.0.38 ptyprocess-0.7.0 pycparser-2.21 pypandoc-1.4 pyparsing-3.0.9 pyrsistent-0.19.3 pyyaml-5.3 pyzmq-23.2.0 requests-2.22.0 requests-oauthlib-1.3.1 scikit-learn-0.22.2.post1 scipy-1.7.0 setuptools-67.6.0 sharedmem-0.3.8 smmap-5.0.0 sphinx-1.8.5 tabulate-0.8.6 terminado-0.17.1 testpath-0.6.0 tornado-6.2 traitlets-4.3.3 urllib3-1.25.11 wcwidth-0.2.6 webencodings-0.5.1 xarray-2022.3.0

[rtd-command-info] start-time: 2023-03-21T09:03:50.366410Z, end-time: 2023-03-21T09:03:50.421985Z, duration: 0, exit-code: 0
cat docs/source/conf.py
###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#


import importlib
import sys
import os.path
from six import string_types

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
        # Sphinx >= 1.3 supports list/tuple to define multiple suffixes
        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
        # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes
        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    theme = importlib.import_module('sphinx_rtd_theme')
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'http://rtd.xfel.eu/websupport'
    websupport2_static_url = '/static/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "doc/mkdocs_new_documentations",
    'version_slug': "doc-mkdocs_new_documentations",
    'MEDIA_URL': "media/",
    'STATIC_URL': "/static/",
    'PRODUCTION_DOMAIN': "rtd.xfel.eu",
    'versions': [
    ("master", "/en/master/"),
    ("latest", "/en/latest/"),
    ("stable", "/en/stable/"),
    ("doc-writing_new_notebook", "/en/doc-writing_new_notebook/"),
    ("doc-mkdocs_new_documentations", "/en/doc-mkdocs_new_documentations/"),
    ],
    'downloads': [ 
    ],
    'subprojects': [ 
    ],
    'slug': 'european-xfel-offline-calibration',
    'name': u'European XFEL Offline Calibration',
    'rtd_language': u'en',
    'programming_language': u'py',
    'canonical_url': 'http://rtd.xfel.eu/docs/european-xfel-offline-calibration/en/doc-mkdocs_new_documentations/',
    'analytics_code': 'None',
    'single_version': False,
    'conf_py_path': '/docs/source/',
    'api_host': 'http://rtd.xfel.eu',
    'github_user': 'None',
    'proxied_api_host': '/_',
    'github_repo': 'None',
    'github_version': 'doc/mkdocs_new_documentations',
    'display_github': False,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'doc/mkdocs_new_documentations',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'doc/mkdocs_new_documentations',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'docsearch_disabled': False,
    'user_analytics_code': '',
    'global_analytics_code': 'None',
    'commit': '886fe413',
}




if 'html_context' in globals():
    
    html_context.update(context)
    
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

# Add External version warning banner to the external version documentation
if 'branch' == 'external':
    extensions.insert(1, "readthedocs_ext.external_version_warning")

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
    language_user in ('zh_CN', 'zh_TW'),
    project_language in ('zh_CN', 'zh_TW'),
])

japanese = any([
    language_user == 'ja',
    project_language == 'ja',
])

if chinese:
    latex_engine = latex_engine_user or 'xelatex'

    latex_elements_rtd = {
        'preamble': '\\usepackage[UTF8]{ctex}\n',
    }
    latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
    latex_engine = latex_engine_user or 'platex'

# Make sure our build directory is always excluded
exclude_patterns = globals().get('exclude_patterns', [])
exclude_patterns.extend(['_build'])

[rtd-command-info] start-time: 2023-03-21T09:03:50.507489Z, end-time: 2023-03-21T09:03:51.478830Z, duration: 0, exit-code: 2
python /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/bin/sphinx-build -T -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html
Running Sphinx v1.8.5
loading translations [en]... done
making output directory...
building [mo]: targets for 0 po files that are out of date
building [readthedocs]: targets for 12 source files that are out of date
updating environment: 12 added, 0 changed, 0 removed
reading sources... [  8%] advanced
reading sources... [ 16%] cal_tools_algorithms
reading sources... [ 25%] calcat_interface
reading sources... [ 33%] changelog
reading sources... [ 41%] configuration
reading sources... [ 50%] index
reading sources... [ 58%] installation
reading sources... [ 66%] test_rsts/roles
reading sources... [ 75%] testing
reading sources... [ 83%] tutorial
reading sources... [ 91%] workflow
reading sources... [100%] xfel_calibrate_conf

/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/doc-mkdocs_new_documentations/docs/source/advanced.rst:46: WARNING: Literal block expected; none found.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/doc-mkdocs_new_documentations/docs/source/changelog.rst:94: WARNING: Bullet list ends without a blank line; unexpected unindent.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/doc-mkdocs_new_documentations/docs/source/changelog.rst:101: WARNING: Bullet list ends without a blank line; unexpected unindent.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/doc-mkdocs_new_documentations/docs/source/index.rst:42: WARNING: toctree contains reference to nonexisting document 'available_notebooks'
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/doc-mkdocs_new_documentations/docs/source/index.rst:42: WARNING: toctree contains reference to nonexisting document '_notebooks/index'
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/doc-mkdocs_new_documentations/docs/source/index.rst:62: WARNING: toctree contains reference to nonexisting document 'architecture'
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/doc-mkdocs_new_documentations/docs/source/testing.rst:116: WARNING: Problems with "include" directive path:
InputError: [Errno 2] No such file or directory: 'test_results.rst'.
/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/doc-mkdocs_new_documentations/docs/source/xfel_calibrate_conf.rst:6: WARNING: Unknown directive type "autofunction".

.. autofunction:: balance_sequences

Traceback (most recent call last):
  File "/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages/sphinx/cmd/build.py", line 304, in build_main
    app.build(args.force_all, filenames)
  File "/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages/sphinx/application.py", line 341, in build
    self.builder.build_update()
  File "/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages/sphinx/builders/__init__.py", line 345, in build_update
    self.build(to_build,
  File "/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages/sphinx/builders/__init__.py", line 360, in build
    updated_docnames = set(self.read())
  File "/usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages/sphinx/builders/__init__.py", line 471, in read
    raise SphinxError('master file %s not found' %
sphinx.errors.SphinxError: master file /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/doc-mkdocs_new_documentations/docs/source/contents.rst not found

Sphinx error:
master file /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/doc-mkdocs_new_documentations/docs/source/contents.rst not found