Read the Docs build information Build id: 25783 Project: european-xfel-offline-calibration Version: doc-mkdocs_new_documentations Commit: a486b9711e516baa1a79a7c90ccd29d683a3bb8c Date: 2023-03-27T17:50:22.594949Z State: finished Success: False [rtd-command-info] start-time: 2023-03-27T17:50:23.756502Z, end-time: 2023-03-27T17:50:42.151157Z, duration: 18, exit-code: 0 git clone --no-single-branch --depth 50 http://git.xfel.eu/calibration/pycalibration . Cloning into '.'... warning: redirecting to https://git.xfel.eu/calibration/pycalibration.git/ [rtd-command-info] start-time: 2023-03-27T17:50:42.465211Z, end-time: 2023-03-27T17:50:42.699930Z, duration: 0, exit-code: 0 git checkout --force origin/doc/mkdocs_new_documentations Note: checking out 'origin/doc/mkdocs_new_documentations'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at a486b971 exclude py modules [rtd-command-info] start-time: 2023-03-27T17:50:42.784413Z, end-time: 2023-03-27T17:50:42.847058Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2023-03-27T17:50:44.426473Z, end-time: 2023-03-27T17:50:49.406311Z, duration: 4, exit-code: 0 python3.8 -mvirtualenv /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations Using base prefix '/home/docs/.pyenv/versions/3.8.0' New python executable in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/bin/python3.8 Also creating executable in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2023-03-27T17:50:49.495223Z, end-time: 2023-03-27T17:50:50.430599Z, duration: 0, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/bin/python -m pip install --upgrade --no-cache-dir pip Requirement already satisfied: pip in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages (23.0.1) [rtd-command-info] start-time: 2023-03-27T17:50:50.516607Z, end-time: 2023-03-27T17:51:18.104883Z, duration: 27, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/bin/python -m pip install --upgrade --no-cache-dir jinja2==2.11.3 markupsafe==2.0.1 Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 mkdocs<1.1 Collecting jinja2==2.11.3 Downloading Jinja2-2.11.3-py2.py3-none-any.whl (125 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 125.7/125.7 kB 3.3 MB/s eta 0:00:00 Collecting markupsafe==2.0.1 Downloading MarkupSafe-2.0.1-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (30 kB) Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 849.5/849.5 kB 18.8 MB/s eta 0:00:00 Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 576.0/576.0 kB 149.8 MB/s eta 0:00:00 Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 543.2/543.2 kB 202.4 MB/s eta 0:00:00 Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 861.9/861.9 kB 181.2 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): 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eta 0:00:00 Collecting charset-normalizer<4,>=2 Downloading charset_normalizer-3.1.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (195 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 195.9/195.9 kB 193.4 MB/s eta 0:00:00 Collecting idna<4,>=2.5 Downloading idna-3.4-py3-none-any.whl (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.5/61.5 kB 169.2 MB/s eta 0:00:00 Building wheels for collected packages: mock, pillow, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23753 sha256=6fb3cb671d043e41e523be3de2e0730375bfa13a48e787fa54cdeb40ebe2a566 Stored in directory: /tmp/pip-ephem-wheel-cache-2j8nojy5/wheels/41/7c/21/90057f91c6ead7c77a90c52d6e85ca48bf82d8b0d3f8dfbb65 Building wheel for pillow (setup.py): started Building wheel for pillow (setup.py): finished with status 'done' Created wheel for pillow: filename=Pillow-5.4.1-cp38-cp38-linux_x86_64.whl size=1262530 sha256=be051e0d3089e5fb5ef7062deac0f0fe9c3b56745a0ed551e8b7bb24184622a6 Stored in directory: /tmp/pip-ephem-wheel-cache-2j8nojy5/wheels/5f/a8/6b/5b7b3f764d879214eb03570f74d2b086201eb514e6ffa68d6d Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.3-py3-none-any.whl size=492022 sha256=2ce46aa420c028a5849dc523ddfee45469d779ee93a8a1c964cf7df03b6f9829 Stored in directory: /tmp/pip-ephem-wheel-cache-2j8nojy5/wheels/a0/0b/ee/e6994fadb42c1354dcccb139b0bf2795271bddfe6253ccdf11 Successfully built mock pillow future Installing collected packages: snowballstemmer, pytz, Pygments, mock, docutils, zipp, urllib3, tornado, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, six, setuptools, PyYAML, pillow, packaging, markupsafe, imagesize, idna, future, click, charset-normalizer, certifi, babel, alabaster, requests, livereload, jinja2, importlib-metadata, commonmark, sphinx, Markdown, recommonmark, mkdocs Attempting uninstall: setuptools Found existing installation: setuptools 67.6.0 Uninstalling setuptools-67.6.0: Successfully uninstalled setuptools-67.6.0 Successfully installed Markdown-3.4.3 PyYAML-6.0 Pygments-2.3.1 alabaster-0.7.13 babel-2.12.1 certifi-2022.12.7 charset-normalizer-3.1.0 click-8.1.3 commonmark-0.8.1 docutils-0.14 future-0.18.3 idna-3.4 imagesize-1.4.1 importlib-metadata-6.1.0 jinja2-2.11.3 livereload-2.6.3 markupsafe-2.0.1 mkdocs-1.0.4 mock-1.0.1 packaging-23.0 pillow-5.4.1 pytz-2023.2 recommonmark-0.5.0 requests-2.28.2 setuptools-41.0.1 six-1.16.0 snowballstemmer-2.2.0 sphinx-5.1.1 sphinxcontrib-applehelp-1.0.4 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.5 tornado-6.2 urllib3-1.26.15 zipp-3.15.0 [rtd-command-info] start-time: 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Building wheels for collected packages: mkdocs-redirects Building wheel for mkdocs-redirects (setup.py): started Building wheel for mkdocs-redirects (setup.py): finished with status 'done' Created wheel for mkdocs-redirects: filename=mkdocs_redirects-1.2.0-py3-none-any.whl size=6055 sha256=586b629a1d7cd120e7828e3c48f4b47abe1588b2ad9489f5d92bfd900f9917d0 Stored in directory: /tmp/pip-ephem-wheel-cache-ys0xt9fh/wheels/56/27/09/2113947d506c30867dbf5b5ab09a5434c50757a976e6ac2f1f Successfully built mkdocs-redirects Installing collected packages: webencodings, mistune, fastjsonschema, watchdog, traitlets, toml, tinycss2, soupsieve, regex, pyzmq, pyyaml-env-tag, python-dateutil, pyrsistent, pygments, platformdirs, pkgutil-resolve-name, pandocfilters, mkdocs-material-extensions, mergedeep, mdurl, jupyterlab-pygments, jinja2, importlib-resources, defusedxml, colorama, bleach, attrs, markdown-it-py, markdown, jupyter-core, jsonschema, griffe, ghp-import, beautifulsoup4, pymdown-extensions, nbformat, mkdocs-glightbox, mkdocs, mdit-py-plugins, jupyter-client, nbclient, mkdocs-section-index, mkdocs-redirects, mkdocs-material, mkdocs-literate-nav, mkdocs-gen-files, mkdocs-autorefs, jupytext, nbconvert, mkdocstrings, mkdocstrings-python, mkdocs-jupyter Attempting uninstall: pygments Found existing installation: Pygments 2.3.1 Uninstalling Pygments-2.3.1: Successfully uninstalled Pygments-2.3.1 Attempting uninstall: jinja2 Found existing installation: Jinja2 2.11.3 Uninstalling Jinja2-2.11.3: Successfully uninstalled Jinja2-2.11.3 Attempting uninstall: markdown Found existing installation: Markdown 3.4.3 Uninstalling Markdown-3.4.3: Successfully uninstalled Markdown-3.4.3 Attempting uninstall: mkdocs Found existing installation: mkdocs 1.0.4 Uninstalling mkdocs-1.0.4: Successfully uninstalled mkdocs-1.0.4 Successfully installed attrs-22.2.0 beautifulsoup4-4.12.0 bleach-6.0.0 colorama-0.4.6 defusedxml-0.7.1 fastjsonschema-2.16.3 ghp-import-2.1.0 griffe-0.25.5 importlib-resources-5.12.0 jinja2-3.1.2 jsonschema-4.17.3 jupyter-client-8.1.0 jupyter-core-5.3.0 jupyterlab-pygments-0.2.2 jupytext-1.14.5 markdown-3.3.7 markdown-it-py-2.2.0 mdit-py-plugins-0.3.5 mdurl-0.1.2 mergedeep-1.3.4 mistune-2.0.5 mkdocs-1.4.2 mkdocs-autorefs-0.4.1 mkdocs-gen-files-0.4.0 mkdocs-glightbox-0.3.2 mkdocs-jupyter-0.24.1 mkdocs-literate-nav-0.5.0 mkdocs-material-9.0.15 mkdocs-material-extensions-1.1.1 mkdocs-redirects-1.2.0 mkdocs-section-index-0.3.5 mkdocstrings-0.20.0 mkdocstrings-python-0.8.3 nbclient-0.7.2 nbconvert-7.2.10 nbformat-5.8.0 pandocfilters-1.5.0 pkgutil-resolve-name-1.3.10 platformdirs-3.2.0 pygments-2.14.0 pymdown-extensions-9.10 pyrsistent-0.19.3 python-dateutil-2.8.2 pyyaml-env-tag-0.1 pyzmq-25.0.2 regex-2023.3.23 soupsieve-2.4 tinycss2-1.2.1 toml-0.10.2 traitlets-5.9.0 watchdog-3.0.0 webencodings-0.5.1 [rtd-command-info] start-time: 2023-03-27T17:51:33.080721Z, end-time: 2023-03-27T17:52:37.497112Z, duration: 64, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/bin/python -m pip install --upgrade --upgrade-strategy eager --no-cache-dir . Processing /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/doc-mkdocs_new_documentations Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting dill==0.3.0 Downloading dill-0.3.0.tar.gz (151 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 151.4/151.4 kB 3.7 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Requirement already satisfied: markupsafe==2.0.1 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages (from European-XFEL-Offline-Calibration==1.0) (2.0.1) Collecting dynaconf==3.1.4 Downloading dynaconf-3.1.4-py2.py3-none-any.whl (197 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 197.5/197.5 kB 12.0 MB/s eta 0:00:00 Collecting pyyaml==5.3 Downloading PyYAML-5.3.tar.gz (268 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 268.2/268.2 kB 71.8 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting prettytable==0.7.2 Downloading prettytable-0.7.2.zip (28 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting calibration-client==11.2.0 Downloading calibration_client-11.2.0-py3-none-any.whl (80 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 80.4/80.4 kB 178.4 MB/s eta 0:00:00 Collecting xarray==2022.3.0 Downloading xarray-2022.3.0-py3-none-any.whl (870 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 870.9/870.9 kB 39.7 MB/s eta 0:00:00 Collecting jupyter-core==4.10.0 Downloading jupyter_core-4.10.0-py3-none-any.whl (87 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 87.3/87.3 kB 178.0 MB/s eta 0:00:00 Collecting jupyter-client==7.3.4 Downloading jupyter_client-7.3.4-py3-none-any.whl (132 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 132.1/132.1 kB 192.7 MB/s eta 0:00:00 Collecting Cython==0.29.21 Downloading Cython-0.29.21-cp38-cp38-manylinux1_x86_64.whl (1.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.9/1.9 MB 101.2 MB/s eta 0:00:00 Requirement already satisfied: python-dateutil==2.8.2 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages (from European-XFEL-Offline-Calibration==1.0) (2.8.2) Collecting pypandoc==1.4 Downloading pypandoc-1.4.tar.gz (27 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting cfelpyutils==2.0.6 Downloading cfelpyutils-2.0.6-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (511 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 511.2/511.2 kB 215.1 MB/s eta 0:00:00 Collecting scipy==1.7.0 Downloading scipy-1.7.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (28.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 28.4/28.4 MB 128.4 MB/s eta 0:00:00 Collecting metadata-client==3.0.8 Downloading metadata_client-3.0.8-py3-none-any.whl (109 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 109.9/109.9 kB 202.3 MB/s eta 0:00:00 Collecting extra-geom==1.8.0 Downloading EXtra_geom-1.8.0-py3-none-any.whl (83 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 83.3/83.3 kB 110.9 MB/s eta 0:00:00 Collecting iminuit==1.3.8 Downloading iminuit-1.3.8-cp38-cp38-manylinux2010_x86_64.whl (4.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.3/4.3 MB 169.7 MB/s eta 0:00:00 Collecting ipython==7.12.0 Downloading ipython-7.12.0-py3-none-any.whl (777 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 777.3/777.3 kB 228.3 MB/s eta 0:00:00 Collecting kafka-python==2.0.2 Downloading kafka_python-2.0.2-py2.py3-none-any.whl (246 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 246.5/246.5 kB 194.1 MB/s eta 0:00:00 Collecting numpy==1.20.3 Downloading numpy-1.20.3-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 15.4/15.4 MB 156.3 MB/s eta 0:00:00 Collecting nbformat==5.0.7 Downloading nbformat-5.0.7-py3-none-any.whl (170 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 170.6/170.6 kB 207.2 MB/s eta 0:00:00 Collecting sharedmem==0.3.8 Downloading sharedmem-0.3.8.tar.gz (17 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting env-cache==0.1 Downloading env_cache-0.1-py2.py3-none-any.whl (4.7 kB) Collecting nbconvert==5.6.1 Downloading nbconvert-5.6.1-py2.py3-none-any.whl (455 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 455.1/455.1 kB 214.1 MB/s eta 0:00:00 Collecting pasha==0.1.1 Downloading pasha-0.1.1-py3-none-any.whl (11 kB) Collecting ipyparallel==6.2.4 Downloading ipyparallel-6.2.4-py2.py3-none-any.whl (198 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 198.6/198.6 kB 191.9 MB/s eta 0:00:00 Collecting jupyter-console==6.1.0 Downloading jupyter_console-6.1.0-py2.py3-none-any.whl (21 kB) Collecting princess==0.5 Downloading princess-0.5-py3-none-any.whl (4.2 kB) Collecting astcheck==0.3.0 Downloading astcheck-0.3.0-py3-none-any.whl (4.9 kB) Collecting traitlets==4.3.3 Downloading traitlets-4.3.3-py2.py3-none-any.whl (75 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 75.7/75.7 kB 190.3 MB/s eta 0:00:00 Collecting requests==2.22.0 Downloading requests-2.22.0-py2.py3-none-any.whl (57 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 58.0/58.0 kB 149.1 MB/s eta 0:00:00 Collecting sphinx==1.8.5 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 163.3 MB/s eta 0:00:00 Collecting EXtra-redu==0.0.7 Downloading EXtra_redu-0.0.7-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (460 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 460.9/460.9 kB 214.0 MB/s eta 0:00:00 Collecting tabulate==0.8.6 Downloading tabulate-0.8.6.tar.gz (45 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.5/45.5 kB 166.6 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting docutils==0.17.1 Downloading docutils-0.17.1-py2.py3-none-any.whl (575 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 575.5/575.5 kB 198.4 MB/s eta 0:00:00 Collecting lxml==4.5.0 Downloading lxml-4.5.0-cp38-cp38-manylinux1_x86_64.whl (5.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.6/5.6 MB 146.7 MB/s eta 0:00:00 Collecting notebook==6.1.5 Downloading notebook-6.1.5-py3-none-any.whl (9.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.5/9.5 MB 151.4 MB/s eta 0:00:00 Collecting Jinja2==2.11.2 Downloading Jinja2-2.11.2-py2.py3-none-any.whl (125 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 125.8/125.8 kB 192.0 MB/s eta 0:00:00 Collecting h5py==3.5.0 Downloading h5py-3.5.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (4.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.5/4.5 MB 161.8 MB/s eta 0:00:00 Collecting extra-data==1.12.0 Downloading EXtra_data-1.12.0-py3-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.2/133.2 kB 182.3 MB/s eta 0:00:00 Collecting matplotlib==3.4.2 Downloading matplotlib-3.4.2-cp38-cp38-manylinux1_x86_64.whl (10.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.3/10.3 MB 98.3 MB/s eta 0:00:00 Collecting ipython-genutils==0.2.0 Downloading ipython_genutils-0.2.0-py2.py3-none-any.whl (26 kB) Collecting scikit-learn==0.22.2.post1 Downloading scikit_learn-0.22.2.post1-cp38-cp38-manylinux1_x86_64.whl (7.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.0/7.0 MB 122.9 MB/s eta 0:00:00 Collecting ipykernel==5.1.4 Downloading ipykernel-5.1.4-py3-none-any.whl (116 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 116.8/116.8 kB 202.7 MB/s eta 0:00:00 Collecting gitpython==3.1.0 Downloading GitPython-3.1.0-py3-none-any.whl (450 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 450.7/450.7 kB 222.7 MB/s eta 0:00:00 Collecting nbparameterise==0.6 Downloading nbparameterise-0.6-py3-none-any.whl (7.7 kB) Collecting nbclient==0.5.1 Downloading nbclient-0.5.1-py3-none-any.whl (65 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 65.7/65.7 kB 160.6 MB/s eta 0:00:00 Collecting pyzmq==23.2.0 Downloading pyzmq-23.2.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 190.6 MB/s eta 0:00:00 Collecting oauth2-xfel-client>=6.1 Downloading oauth2_xfel_client-6.1.1-py3-none-any.whl (9.8 kB) Collecting oauthlib Downloading oauthlib-3.2.2-py3-none-any.whl (151 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 151.7/151.7 kB 203.4 MB/s eta 0:00:00 Requirement already satisfied: pytz in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages (from calibration-client==11.2.0->European-XFEL-Offline-Calibration==1.0) (2023.2) Collecting requests-oauthlib Downloading requests_oauthlib-1.3.1-py2.py3-none-any.whl (23 kB) Collecting mypy-extensions>=0.4.3 Downloading mypy_extensions-1.0.0-py3-none-any.whl (4.7 kB) Collecting pandas>=1.1.5 Downloading pandas-1.5.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.2/12.2 MB 146.4 MB/s eta 0:00:00 Collecting euxfel-bunch-pattern>=0.6 Downloading euxfel_bunch_pattern-0.6-py3-none-any.whl (5.3 kB) Collecting gitdb<5,>=4.0.1 Downloading gitdb-4.0.10-py3-none-any.whl (62 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.7/62.7 kB 162.6 MB/s eta 0:00:00 Requirement already satisfied: tornado>=4.2 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages (from ipykernel==5.1.4->European-XFEL-Offline-Calibration==1.0) (6.2) Collecting decorator Downloading decorator-5.1.1-py3-none-any.whl (9.1 kB) Requirement already satisfied: 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Pillow-9.4.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.3/3.3 MB 34.2 MB/s eta 0:00:00 Collecting async-generator Downloading async_generator-1.10-py3-none-any.whl (18 kB) Requirement already satisfied: bleach in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages (from nbconvert==5.6.1->European-XFEL-Offline-Calibration==1.0) (6.0.0) Collecting testpath Downloading testpath-0.6.0-py3-none-any.whl (83 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 83.9/83.9 kB 175.8 MB/s eta 0:00:00 Collecting mistune<2,>=0.8.1 Downloading mistune-0.8.4-py2.py3-none-any.whl (16 kB) Requirement already satisfied: defusedxml in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages (from nbconvert==5.6.1->European-XFEL-Offline-Calibration==1.0) (0.7.1) Requirement already satisfied: pandocfilters>=1.4.1 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages (from nbconvert==5.6.1->European-XFEL-Offline-Calibration==1.0) (1.5.0) Requirement already satisfied: jsonschema!=2.5.0,>=2.4 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages (from nbformat==5.0.7->European-XFEL-Offline-Calibration==1.0) (4.17.3) Collecting prometheus-client Downloading prometheus_client-0.16.0-py3-none-any.whl (122 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 122.5/122.5 kB 188.4 MB/s eta 0:00:00 Collecting terminado>=0.8.3 Downloading terminado-0.17.1-py3-none-any.whl (17 kB) Collecting Send2Trash Downloading Send2Trash-1.8.0-py3-none-any.whl (18 kB) Collecting argon2-cffi Downloading argon2_cffi-21.3.0-py3-none-any.whl (14 kB) Requirement already satisfied: pip>=8.1.0 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jsonschema!=2.5.0,>=2.4->nbformat==5.0.7->European-XFEL-Offline-Calibration==1.0) (0.19.3) Requirement already satisfied: importlib-resources>=1.4.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat==5.0.7->European-XFEL-Offline-Calibration==1.0) (5.12.0) Requirement already satisfied: attrs>=17.4.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat==5.0.7->European-XFEL-Offline-Calibration==1.0) (22.2.0) Collecting wcwidth Downloading wcwidth-0.2.6-py2.py3-none-any.whl (29 kB) Collecting ptyprocess Downloading ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB) Collecting argon2-cffi-bindings Downloading argon2_cffi_bindings-21.2.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (86 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 86.2/86.2 kB 183.7 MB/s eta 0:00:00 Requirement already satisfied: webencodings in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages (from bleach->nbconvert==5.6.1->European-XFEL-Offline-Calibration==1.0) (0.5.1) Requirement already satisfied: sphinxcontrib-serializinghtml in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages (from sphinxcontrib-websupport->sphinx==1.8.5->European-XFEL-Offline-Calibration==1.0) (1.1.5) Requirement already satisfied: zipp>=3.1.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/lib/python3.8/site-packages (from importlib-resources>=1.4.0->jsonschema!=2.5.0,>=2.4->nbformat==5.0.7->European-XFEL-Offline-Calibration==1.0) (3.15.0) Collecting cffi>=1.0.1 Downloading cffi-1.15.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (442 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 442.7/442.7 kB 53.9 MB/s eta 0:00:00 Collecting pycparser Downloading pycparser-2.21-py2.py3-none-any.whl (118 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 118.7/118.7 kB 176.5 MB/s eta 0:00:00 Building wheels for collected packages: European-XFEL-Offline-Calibration, dill, prettytable, pypandoc, pyyaml, sharedmem, tabulate Building wheel for European-XFEL-Offline-Calibration (pyproject.toml): started Building wheel for European-XFEL-Offline-Calibration (pyproject.toml): finished with status 'done' Created wheel for European-XFEL-Offline-Calibration: filename=European_XFEL_Offline_Calibration-1.0-cp38-cp38-linux_x86_64.whl size=1598757 sha256=6f9cf4d450f962c863d595e287131bdc735f3139d5277896f5ae35a1140744e3 Stored in directory: /tmp/pip-ephem-wheel-cache-else8ihp/wheels/1d/8e/2b/dcedca7f2ac9a173c60e54d723e1d361570bb0c374714b3976 Building wheel for dill (setup.py): started Building wheel for dill (setup.py): finished with status 'done' Created wheel for dill: filename=dill-0.3.0-py3-none-any.whl size=77512 sha256=9443133347a70540243c29d95a99ec6741d946fece85de3005d8b016b233bb4e Stored in directory: /tmp/pip-ephem-wheel-cache-else8ihp/wheels/ec/e7/fb/9b59e2dbda9eeefab51f7cb41df434ff463c4afe1985abff24 Building wheel for prettytable (setup.py): started Building wheel for prettytable (setup.py): finished with status 'done' Created wheel for prettytable: filename=prettytable-0.7.2-py3-none-any.whl size=13699 sha256=3b96e8db79a07ad34f3c6bfd44d5c579e12ddeb52ecc46372ccf34e9a9b3a4e3 Stored in directory: /tmp/pip-ephem-wheel-cache-else8ihp/wheels/48/6d/77/9517cb933af254f51a446f1a5ec9c2be3e45f17384940bce68 Building wheel for pypandoc (setup.py): started Building wheel for pypandoc (setup.py): finished with status 'done' Created wheel for pypandoc: filename=pypandoc-1.4-py3-none-any.whl size=16716 sha256=753132e39b258ebe7992c881c79fa6ce936e2d900ed95d8043fcc2a62f76ef85 Stored in directory: /tmp/pip-ephem-wheel-cache-else8ihp/wheels/f7/d9/a0/ef1fe56c058e41d6271a4935caaeae89d43e2280504690a329 Building wheel for pyyaml (setup.py): started Building wheel for pyyaml (setup.py): finished with status 'done' Created wheel for pyyaml: filename=PyYAML-5.3-cp38-cp38-linux_x86_64.whl size=44227 sha256=f456da26e623fc3068fc3f2edd7f49df4523a62524fd7e2e243e99f666fefd64 Stored in directory: /tmp/pip-ephem-wheel-cache-else8ihp/wheels/e4/94/ec/65e430f66fda7a86c08f61ce59455581adc269a65881b4ffeb Building wheel for sharedmem (setup.py): started Building wheel for sharedmem (setup.py): finished with status 'done' Created wheel for sharedmem: filename=sharedmem-0.3.8-py3-none-any.whl size=18342 sha256=e4cc2a1e447dc08a7f4428614075b825c9f8ebc10e07d0878acd2b34442b1100 Stored in directory: /tmp/pip-ephem-wheel-cache-else8ihp/wheels/ee/ef/25/9562dc56f11d2b55824c1b1547eff68b75f1a0117d3b0867dd Building wheel for tabulate (setup.py): started Building wheel for tabulate (setup.py): finished with status 'done' Created wheel for tabulate: filename=tabulate-0.8.6-py3-none-any.whl size=23273 sha256=51c18f730604011534edd55950fe0747dd32bcd83a1746d52684efde6084db7a Stored in directory: /tmp/pip-ephem-wheel-cache-else8ihp/wheels/86/8c/d9/3b6c2f55efaefe656c52b725d2fdc5669085c83444979db8b3 Successfully built European-XFEL-Offline-Calibration dill prettytable pypandoc pyyaml sharedmem tabulate Installing collected packages: wcwidth, tabulate, Send2Trash, ptyprocess, prettytable, pickleshare, mistune, kafka-python, ipython-genutils, env-cache, dynaconf, chardet, backcall, urllib3, testpath, terminado, sphinxcontrib-websupport, smmap, setuptools, pyzmq, pyyaml, pyparsing, pycparser, prompt-toolkit, prometheus-client, pillow, pexpect, parso, oauthlib, numpy, nest-asyncio, mypy-extensions, lxml, kiwisolver, joblib, Jinja2, idna, entrypoints, docutils, dill, decorator, Cython, cycler, async-generator, astcheck, traitlets, sharedmem, scipy, requests, pypandoc, pasha, pandas, matplotlib, jedi, iminuit, h5py, gitdb, euxfel-bunch-pattern, cffi, xarray, sphinx, scikit-learn, requests-oauthlib, jupyter-core, ipython, gitpython, cfelpyutils, argon2-cffi-bindings, oauth2-xfel-client, nbformat, jupyter-client, extra-geom, extra-data, argon2-cffi, nbconvert, nbclient, metadata-client, ipykernel, EXtra-redu, calibration-client, princess, notebook, nbparameterise, jupyter-console, ipyparallel, European-XFEL-Offline-Calibration Attempting uninstall: mistune Found existing installation: mistune 2.0.5 Uninstalling mistune-2.0.5: Successfully uninstalled mistune-2.0.5 Attempting uninstall: urllib3 Found existing installation: urllib3 1.26.15 Uninstalling urllib3-1.26.15: Successfully uninstalled urllib3-1.26.15 Attempting uninstall: setuptools Found existing installation: setuptools 41.0.1 Uninstalling setuptools-41.0.1: Successfully uninstalled setuptools-41.0.1 Attempting uninstall: pyzmq Found existing installation: pyzmq 25.0.2 Uninstalling pyzmq-25.0.2: Successfully uninstalled pyzmq-25.0.2 Attempting uninstall: pyyaml Found existing installation: PyYAML 6.0 Uninstalling PyYAML-6.0: Successfully uninstalled PyYAML-6.0 Attempting uninstall: pillow Found existing installation: Pillow 5.4.1 Uninstalling Pillow-5.4.1: Successfully uninstalled Pillow-5.4.1 Attempting uninstall: Jinja2 Found existing installation: Jinja2 3.1.2 Uninstalling Jinja2-3.1.2: Successfully uninstalled Jinja2-3.1.2 Attempting uninstall: idna Found existing installation: idna 3.4 Uninstalling idna-3.4: Successfully uninstalled idna-3.4 Attempting uninstall: docutils Found existing installation: docutils 0.14 Uninstalling docutils-0.14: Successfully uninstalled docutils-0.14 Attempting uninstall: traitlets Found existing installation: traitlets 5.9.0 Uninstalling traitlets-5.9.0: Successfully uninstalled traitlets-5.9.0 Attempting uninstall: requests Found existing installation: requests 2.28.2 Uninstalling requests-2.28.2: Successfully uninstalled requests-2.28.2 Attempting uninstall: sphinx Found existing installation: Sphinx 5.1.1 Uninstalling Sphinx-5.1.1: Successfully uninstalled Sphinx-5.1.1 Attempting uninstall: jupyter-core Found existing installation: jupyter_core 5.3.0 Uninstalling jupyter_core-5.3.0: Successfully uninstalled jupyter_core-5.3.0 Attempting uninstall: nbformat Found existing installation: nbformat 5.8.0 Uninstalling nbformat-5.8.0: Successfully uninstalled nbformat-5.8.0 Attempting uninstall: jupyter-client Found existing installation: jupyter_client 8.1.0 Uninstalling jupyter_client-8.1.0: Successfully uninstalled jupyter_client-8.1.0 Attempting uninstall: nbconvert Found existing installation: nbconvert 7.2.10 Uninstalling nbconvert-7.2.10: Successfully uninstalled nbconvert-7.2.10 Attempting uninstall: nbclient Found existing installation: nbclient 0.7.2 Uninstalling nbclient-0.7.2: Successfully uninstalled nbclient-0.7.2 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. mkdocs-material 9.0.15 requires jinja2>=3.0, but you have jinja2 2.11.2 which is incompatible. mkdocs-material 9.0.15 requires requests>=2.26, but you have requests 2.22.0 which is incompatible. mkdocs-jupyter 0.24.1 requires nbconvert<8,>=7.2.9, but you have nbconvert 5.6.1 which is incompatible. Successfully installed Cython-0.29.21 EXtra-redu-0.0.7 European-XFEL-Offline-Calibration-1.0 Jinja2-2.11.2 Send2Trash-1.8.0 argon2-cffi-21.3.0 argon2-cffi-bindings-21.2.0 astcheck-0.3.0 async-generator-1.10 backcall-0.2.0 calibration-client-11.2.0 cfelpyutils-2.0.6 cffi-1.15.1 chardet-3.0.4 cycler-0.11.0 decorator-5.1.1 dill-0.3.0 docutils-0.17.1 dynaconf-3.1.4 entrypoints-0.4 env-cache-0.1 euxfel-bunch-pattern-0.6 extra-data-1.12.0 extra-geom-1.8.0 gitdb-4.0.10 gitpython-3.1.0 h5py-3.5.0 idna-2.8 iminuit-1.3.8 ipykernel-5.1.4 ipyparallel-6.2.4 ipython-7.12.0 ipython-genutils-0.2.0 jedi-0.18.2 joblib-1.2.0 jupyter-client-7.3.4 jupyter-console-6.1.0 jupyter-core-4.10.0 kafka-python-2.0.2 kiwisolver-1.4.4 lxml-4.5.0 matplotlib-3.4.2 metadata-client-3.0.8 mistune-0.8.4 mypy-extensions-1.0.0 nbclient-0.5.1 nbconvert-5.6.1 nbformat-5.0.7 nbparameterise-0.6 nest-asyncio-1.5.6 notebook-6.1.5 numpy-1.20.3 oauth2-xfel-client-6.1.1 oauthlib-3.2.2 pandas-1.5.3 parso-0.8.3 pasha-0.1.1 pexpect-4.8.0 pickleshare-0.7.5 pillow-9.4.0 prettytable-0.7.2 princess-0.5 prometheus-client-0.16.0 prompt-toolkit-3.0.38 ptyprocess-0.7.0 pycparser-2.21 pypandoc-1.4 pyparsing-3.0.9 pyyaml-5.3 pyzmq-23.2.0 requests-2.22.0 requests-oauthlib-1.3.1 scikit-learn-0.22.2.post1 scipy-1.7.0 setuptools-67.6.0 sharedmem-0.3.8 smmap-5.0.0 sphinx-1.8.5 sphinxcontrib-websupport-1.2.4 tabulate-0.8.6 terminado-0.17.1 testpath-0.6.0 traitlets-4.3.3 urllib3-1.25.11 wcwidth-0.2.6 xarray-2022.3.0 [rtd-command-info] start-time: 2023-03-27T17:52:37.730282Z, end-time: 2023-03-27T17:52:37.789349Z, duration: 0, exit-code: 0 cat mkdocs.yml copyright: '© 2018 European XFEL' docs_dir: /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/doc-mkdocs_new_documentations/docs extra_css: - css/custom.css - http://rtd.xfel.eu/static/css/badge_only.css - http://rtd.xfel.eu/static/css/readthedocs-doc-embed.css extra_javascript: - readthedocs-data.js - http://rtd.xfel.eu/static/core/js/readthedocs-doc-embed.js - http://rtd.xfel.eu/static/javascript/readthedocs-analytics.js google_analytics: null markdown_extensions: - pymdownx.highlight: anchor_linenums: true - pymdownx.inlinehilite - pymdownx.snippets - pymdownx.tasklist - pymdownx.arithmatex: generic: true - pymdownx.tabbed: null - pymdownx.details - pymdownx.mark - pymdownx.emoji: null - attr_list - def_list - footnotes - md_in_html - toc: permalink: true - admonition - tables - codehilite mkdocstrings.extension: default_handler: python handlers: python: selector: python syntax: sphinx nav: - index.md - Operation: - Available Calibration notebooks: operation/available_notebooks.md - CALCAT: operation/calibration_database.md - myMDC: operation/myMDC.md - Calibration webservice: operation/webservice.md - Troubleshooting: - Correcting detector RAW data: operation/troubleshooting_correction.md - Calibration constant generation: operation/troubleshooting_calibration_generation.md - Development: - Installation: development/installation.md - Workflow: development/workflow.md - How to write a notebook: development/how_to_write_xfel_calibrate_notebook_NBC.ipynb - Configuration: development/configuration.md - Advanced topics: development/advanced.md - Code Reference: - CALCAT Interface: code_reference/calcat_interface.md - Code Reference: reference/ - Reference: - FAQ: references/faq.md - Changelog: references/changelog.md - Glossary: references/glossary.md plugins: - glightbox - literate-nav: nav_file: SUMMARY.md - mkdocstrings: default_handler: python handlers: python: selector: python syntax: sphinx - search - autorefs - mkdocs-jupyter: allow_errors: false include: - '*.ipynb' - gen-files: scripts: - docs/gen_ref_pages.py repo_url: https://git.xfel.eu/calibration/pycalibration site_name: EuXFEL Offline calibration theme: features: - navigation.tabs - navigation.sections - navigation.top - search.suggest - search.highlight - content.tabs.link - content.code.annotation - content.code.copy - navigation.indexes language: en name: material palette: - scheme: light toggle: icon: material/lightbulb name: Switch to dark mode - scheme: slate toggle: icon: material/lightbulb-outline name: Switch to light mode [rtd-command-info] start-time: 2023-03-27T17:52:37.873973Z, end-time: 2023-03-27T17:52:39.512674Z, duration: 1, exit-code: 1 /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/envs/doc-mkdocs_new_documentations/bin/python -m mkdocs build --clean --site-dir _build/html --config-file mkdocs.yml WARNING - Config value 'mkdocstrings.extension': Unrecognised configuration name: mkdocstrings.extension INFO - Cleaning site directory INFO - Building documentation to directory: /usr/src/app/checkouts/readthedocs.org/user_builds/european-xfel-offline-calibration/checkouts/doc-mkdocs_new_documentations/_build/html INFO - The following pages exist in the docs directory, but are not included in the "nav" configuration: - operation.md - overview.md - code_reference/cal_tools.md ERROR - mkdocstrings: cal_tools.epix100.epix100lib could not be found ERROR - Error reading page 'code_reference/cal_tools.md': ERROR - Could not collect 'cal_tools.epix100.epix100lib' init parts: ['cal_tools'] init parts: ['cal_tools', 'gotthard2'] init parts: ['xfel_calibrate'] Aborted with a BuildError!