Read the Docs build information Build id: 26628 Project: data-analysis-user-documentation Version: latest Commit: b672383a8bfe9789adf199450ea9f7b60a664aad Date: 2023-08-02T15:25:57.008448Z State: finished Success: True [rtd-command-info] start-time: 2023-08-02T15:25:58.099770Z, end-time: 2023-08-02T15:25:59.537647Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 http://git.xfel.eu/dataAnalysis/user-documentation . Cloning into '.'... warning: redirecting to https://git.xfel.eu/dataAnalysis/user-documentation.git/ [rtd-command-info] start-time: 2023-08-02T15:25:59.817627Z, end-time: 2023-08-02T15:25:59.937365Z, duration: 0, exit-code: 0 git checkout --force origin/main Note: checking out 'origin/main'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at b672383 Update environments submodule [rtd-command-info] start-time: 2023-08-02T15:26:00.023658Z, end-time: 2023-08-02T15:26:00.086446Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2023-08-02T15:26:00.374369Z, end-time: 2023-08-02T15:26:00.455419Z, duration: 0, exit-code: 0 git submodule sync [rtd-command-info] start-time: 2023-08-02T15:26:00.539807Z, end-time: 2023-08-02T15:26:01.296248Z, duration: 0, exit-code: 0 git submodule update --init --force --recursive environments Submodule 'environments' (https://github.com/European-XFEL/environments) registered for path 'environments' Cloning into '/usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/checkouts/latest/environments'... Submodule path 'environments': checked out 'ed1dc9d43ba35712d5beaccd0616803003cd1e38' [rtd-command-info] start-time: 2023-08-02T15:26:02.431073Z, end-time: 2023-08-02T15:26:07.266557Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/envs/latest Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/envs/latest/bin/python3.7 Also creating executable in /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2023-08-02T15:26:07.354065Z, end-time: 2023-08-02T15:26:08.287645Z, duration: 0, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/envs/latest/bin/python -m pip install --upgrade --no-cache-dir pip Requirement already satisfied: pip in /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/envs/latest/lib/python3.7/site-packages (23.2.1) [rtd-command-info] start-time: 2023-08-02T15:26:08.385048Z, end-time: 2023-08-02T15:26:19.959816Z, duration: 11, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/envs/latest/bin/python -m pip install --upgrade --no-cache-dir jinja2==2.11.3 markupsafe==2.0.1 Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 mkdocs<1.1 Collecting jinja2==2.11.3 Downloading Jinja2-2.11.3-py2.py3-none-any.whl (125 kB) 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typing_extensions-4.7.1-py3-none-any.whl (33 kB) Downloading urllib3-2.0.4-py3-none-any.whl (123 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 123.9/123.9 kB 184.1 MB/s eta 0:00:00 Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23752 sha256=1757b77af3a050ea4df61c17b282f11a77fde2a6ab7f27f0b1f22963b3efbc06 Stored in directory: /tmp/pip-ephem-wheel-cache-q9jt2hqo/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.3-py3-none-any.whl size=492023 sha256=5efc1947f7af5137007f5c547f3c77befb68e370d387d0d363b5401ebb293b06 Stored in directory: /tmp/pip-ephem-wheel-cache-q9jt2hqo/wheels/fa/cd/1f/c6b7b50b564983bf3011e8fc75d06047ddc50c07f6e3660b00 Successfully built mock future Installing collected packages: snowballstemmer, pytz, Pygments, mock, docutils, zipp, urllib3, typing-extensions, tornado, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, six, setuptools, PyYAML, pillow, packaging, markupsafe, imagesize, idna, future, charset-normalizer, certifi, babel, alabaster, requests, livereload, jinja2, importlib-metadata, commonmark, sphinx, Markdown, click, recommonmark, mkdocs Attempting uninstall: setuptools Found existing installation: setuptools 68.0.0 Uninstalling setuptools-68.0.0: Successfully uninstalled setuptools-68.0.0 Successfully installed Markdown-3.4.4 PyYAML-6.0.1 Pygments-2.3.1 alabaster-0.7.13 babel-2.12.1 certifi-2023.7.22 charset-normalizer-3.2.0 click-8.1.6 commonmark-0.8.1 docutils-0.14 future-0.18.3 idna-3.4 imagesize-1.4.1 importlib-metadata-6.7.0 jinja2-2.11.3 livereload-2.6.3 markupsafe-2.0.1 mkdocs-1.0.4 mock-1.0.1 packaging-23.1 pillow-5.4.1 pytz-2023.3 recommonmark-0.5.0 requests-2.31.0 setuptools-41.0.1 six-1.16.0 snowballstemmer-2.2.0 sphinx-5.1.1 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.5 tornado-6.2 typing-extensions-4.7.1 urllib3-2.0.4 zipp-3.15.0 [rtd-command-info] start-time: 2023-08-02T15:26:20.047766Z, end-time: 2023-08-02T15:26:32.865849Z, duration: 12, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/envs/latest/bin/python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting mkdocs>=1.4.0 (from -r requirements.txt (line 1)) Obtaining dependency information for mkdocs>=1.4.0 from https://files.pythonhosted.org/packages/14/f4/66760e770dd1eb4b3aab7b7e3e97c5ec5c0d8c4f66ebbd32f1cb5cf53139/mkdocs-1.5.2-py3-none-any.whl.metadata Downloading mkdocs-1.5.2-py3-none-any.whl.metadata (6.2 kB) Collecting mkdocs-material~=8.5.10 (from -r requirements.txt (line 2)) Downloading mkdocs_material-8.5.11-py3-none-any.whl (7.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.6/7.6 MB 53.2 MB/s eta 0:00:00 Collecting mkdocs-section-index~=0.3.4 (from -r requirements.txt (line 3)) Downloading mkdocs_section_index-0.3.5-py3-none-any.whl (8.6 kB) Collecting mkdocs-literate-nav~=0.5.0 (from -r requirements.txt (line 4)) Downloading mkdocs_literate_nav-0.5.0-py3-none-any.whl (12 kB) Collecting mkdocstrings[python]>=0.18 (from -r requirements.txt (line 5)) Obtaining dependency information for mkdocstrings[python]>=0.18 from https://files.pythonhosted.org/packages/b6/26/5816407b5dd51821a3d23f53bdbd013ab1878b6246e520dc014d200ee1d2/mkdocstrings-0.22.0-py3-none-any.whl.metadata Downloading mkdocstrings-0.22.0-py3-none-any.whl.metadata (7.0 kB) Collecting karabo_bridge (from -r requirements.txt (line 6)) Downloading karabo_bridge-0.6.2.tar.gz (17 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mkdocs-redirects (setup.py): started Building wheel for mkdocs-redirects (setup.py): finished with status 'done' Created wheel for mkdocs-redirects: filename=mkdocs_redirects-1.2.1-py3-none-any.whl size=6032 sha256=6dfe10273aac9f9b17742594e0bf164ce8d1d68fae05b633212583cac2c4072a Stored in directory: /tmp/pip-ephem-wheel-cache-apa1y3qy/wheels/d6/6d/9b/743519b3394bc1f315b1315b4a71253e52eaa0a81deea6d8be Successfully built karabo_bridge mkdocs-redirects Installing collected packages: text-unidecode, msgpack, cached-property, watchdog, urllib3, pyzmq, pyyaml-env-tag, python-slugify, python-dateutil, pygments, platformdirs, pathspec, numpy, mkdocs-material-extensions, mergedeep, jinja2, colorama, msgpack-numpy, griffe, ghp-import, pymdown-extensions, mkdocs, karabo_bridge, mkdocs-section-index, mkdocs-redirects, mkdocs-monorepo-plugin, mkdocs-material, mkdocs-literate-nav, mkdocs-gen-files, mkdocs-autorefs, mkdocstrings, mkdocstrings-python Attempting uninstall: urllib3 Found existing installation: urllib3 2.0.4 Uninstalling urllib3-2.0.4: Successfully uninstalled urllib3-2.0.4 Attempting uninstall: pygments Found existing installation: Pygments 2.3.1 Uninstalling Pygments-2.3.1: Successfully uninstalled Pygments-2.3.1 Attempting uninstall: jinja2 Found existing installation: Jinja2 2.11.3 Uninstalling Jinja2-2.11.3: Successfully uninstalled Jinja2-2.11.3 Attempting uninstall: mkdocs Found existing installation: mkdocs 1.0.4 Uninstalling mkdocs-1.0.4: Successfully uninstalled mkdocs-1.0.4 Successfully installed cached-property-1.5.2 colorama-0.4.6 ghp-import-2.1.0 griffe-0.30.1 jinja2-3.1.2 karabo_bridge-0.6.2 mergedeep-1.3.4 mkdocs-1.5.2 mkdocs-autorefs-0.4.1 mkdocs-gen-files-0.5.0 mkdocs-literate-nav-0.5.0 mkdocs-material-8.5.11 mkdocs-material-extensions-1.1.1 mkdocs-monorepo-plugin-1.0.5 mkdocs-redirects-1.2.1 mkdocs-section-index-0.3.5 mkdocstrings-0.22.0 mkdocstrings-python-1.1.2 msgpack-1.0.5 msgpack-numpy-0.4.8 numpy-1.21.6 pathspec-0.11.2 platformdirs-3.10.0 pygments-2.15.1 pymdown-extensions-10.1 python-dateutil-2.8.2 python-slugify-8.0.1 pyyaml-env-tag-0.1 pyzmq-25.1.0 text-unidecode-1.3 urllib3-1.26.16 watchdog-3.0.0 [rtd-command-info] start-time: 2023-08-02T15:26:33.099192Z, end-time: 2023-08-02T15:26:33.156561Z, duration: 0, exit-code: 0 cat mkdocs.yml docs_dir: /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/checkouts/latest/docs extra: social: - icon: fontawesome/brands/github link: https://github.com/European-XFEL extra_css: - stylesheets/extra.css - http://rtd.xfel.eu/static/css/badge_only.css - http://rtd.xfel.eu/static/css/readthedocs-doc-embed.css extra_javascript: - readthedocs-data.js - http://rtd.xfel.eu/static/core/js/readthedocs-doc-embed.js - http://rtd.xfel.eu/static/javascript/readthedocs-analytics.js google_analytics: null markdown_extensions: - abbr - admonition - attr_list - codehilite - def_list - footnotes - md_in_html - pymdownx.details - pymdownx.emoji - pymdownx.snippets: auto_append: - docs/includes/glossary.md url_download: true - pymdownx.superfences - pymdownx.tabbed: alternate_style: true - pymdownx.tasklist - tables - toc: permalink: "\xB6" nav: - index.md - Overview: overview.md - Accounts and Access: accounts.md - Data Files: data-files.md - Online Analysis: online.md - Offline Analysis (Maxwell): offline.md - Software: software/index.md - Software Environments: '!include ./environments/mkdocs.yml' - Jupyter Hub: jhub.md - Usecases: usecases.md - Resources: resources.md - Newsletters: newsletters.md - Changelog: changelog.md - Citations: citations.md plugins: - search - gen-files: scripts: - ./environments/docs/gen_environments.py - ./environments/docs/gen_modules.py - ./environments/docs/gen_recipes.py - literate-nav - mkdocstrings - monorepo - redirects: redirect_maps: citations.html.md: citations.md computing.html.md: accounts.md datafiles.html.md: data-files.md jhub.html.md: jhub.md online.html.md: online.md overview.html.md: overview.md resources.html.md: resources.md software.html.md: software/index.md usecases.html.md: usecases.md repo_url: https://git.xfel.eu/dataAnalysis/user-documentation site_description: Data Analysis User Documentation for EuXFEL site_name: EuXFEL Data Analysis User Documentation site_url: https://rtd.xfel.eu/docs/data-analysis-user-documentation/en/latest/ theme: custom_dir: docs/overrides features: - announce.dismiss - content.tabs.link - navigation.indexes - navigation.top - navigation.tracking - navigation.instant - search.highlight - search.share - search.suggest - toc.follow - toc.integrate font: code: Roboto Mono text: Roboto logo: assets/logo.jpeg name: material palette: language: en scheme: preference [rtd-command-info] start-time: 2023-08-02T15:26:33.239294Z, end-time: 2023-08-02T15:26:38.320665Z, duration: 5, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/envs/latest/bin/python -m mkdocs build --clean --site-dir _build/html --config-file mkdocs.yml INFO - Cleaning site directory INFO - Building documentation to directory: /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/checkouts/latest/_build/html INFO - The following pages exist in the docs directory, but are not included in the "nav" configuration: - includes/glossary.md - software/extra-xwiz.md - software/hdf5-virtualise.md - software/karabo-bridge.md INFO - Doc file 'data-files.md' contains an absolute link '/overview#data-policies', it was left as is. Did you mean 'overview.md#data-policies'? INFO - Doc file 'newsletters.md' contains an unrecognized relative link '../euxfel-software-environments/', it was left as is. Did you mean 'euxfel-software-environments/index.md'? INFO - Doc file 'newsletters.md' contains an unrecognized relative link '../euxfel-software-environments/', it was left as is. Did you mean 'euxfel-software-environments/index.md'? INFO - Doc file 'newsletters.md' contains an unrecognized relative link '../euxfel-software-environments/environments/#module-system', it was left as is. Did you mean 'euxfel-software-environments/environments.md#module-system'? INFO - Doc file 'newsletters.md' contains an unrecognized relative link '../euxfel-software-environments/environments/#using-our-python-environments', it was left as is. Did you mean 'euxfel-software-environments/environments.md#using-our-python-environments'? INFO - Doc file 'newsletters.md' contains an unrecognized relative link '../euxfel-software-environments/environments/#creating-your-own-environments', it was left as is. Did you mean 'euxfel-software-environments/environments.md#creating-your-own-environments'? INFO - Doc file 'newsletters.md' contains an unrecognized relative link '../euxfel-software-environments/environments/#faq', it was left as is. Did you mean 'euxfel-software-environments/environments.md#faq'? INFO - Doc file 'offline.md' contains an unrecognized relative link '../euxfel-software-environments/', it was left as is. Did you mean 'euxfel-software-environments/index.md'? INFO - Doc file 'offline.md' contains an unrecognized relative link '../euxfel-software-environments/', it was left as is. Did you mean 'euxfel-software-environments/index.md'? INFO - Doc file 'usecases.md' contains an unrecognized relative link 'extra-foam', it was left as is. INFO - Doc file 'usecases.md' contains an unrecognized relative link 'karabo-bridge', it was left as is. INFO - Doc file 'software/index.md' contains an unrecognized relative link '../euxfel-software-environments/', it was left as is. Did you mean '../euxfel-software-environments/index.md'? INFO - Doc file 'software/index.md' contains an unrecognized relative link '../euxfel-software-environments/environments#module-system', it was left as is. Did you mean '../euxfel-software-environments/environments.md#module-system'? INFO - Doc file 'software/index.md' contains an unrecognized relative link 'extra-foam', it was left as is. INFO - Doc file 'software/index.md' contains an unrecognized relative link '../euxfel-software-environments/environments#module-system', it was left as is. Did you mean '../euxfel-software-environments/environments.md#module-system'? INFO - Doc file 'software/index.md' contains an unrecognized relative link '../euxfel-software-environments/', it was left as is. Did you mean '../euxfel-software-environments/index.md'? INFO - Documentation built in 4.61 seconds