Read the Docs build information
Build id: 27780
Project: agipd-manual-mid
Version: latest
Commit: 016923e27809bc3df5bf89405d0116d9812ec259
Date: 2024-03-12T09:26:12.571675Z
State: finished
Success: True


[rtd-command-info] start-time: 2024-03-12T09:26:13.746859Z, end-time: 2024-03-12T09:26:14.884670Z, duration: 1, exit-code: 0
git clone --no-single-branch --depth 50 http://git.xfel.eu/detectors/agipd_mid.git .
Cloning into '.'...

[rtd-command-info] start-time: 2024-03-12T09:26:15.175956Z, end-time: 2024-03-12T09:26:15.372284Z, duration: 0, exit-code: 0
git checkout --force origin/master
Note: checking out 'origin/master'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 016923e Merge branch 'raabnat-master-patch-55392' into 'master'

[rtd-command-info] start-time: 2024-03-12T09:26:15.460453Z, end-time: 2024-03-12T09:26:15.523098Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2024-03-12T09:26:16.907055Z, end-time: 2024-03-12T09:26:22.066036Z, duration: 5, exit-code: 0
python3.8 -mvirtualenv /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/envs/latest
Using base prefix '/home/docs/.pyenv/versions/3.8.0'
New python executable in /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/envs/latest/bin/python3.8
Also creating executable in /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2024-03-12T09:26:22.157550Z, end-time: 2024-03-12T09:26:23.145868Z, duration: 0, exit-code: 0
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/envs/latest/bin/python -m pip install --upgrade --no-cache-dir pip
Requirement already satisfied: pip in /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/envs/latest/lib/python3.8/site-packages (24.0)

[rtd-command-info] start-time: 2024-03-12T09:26:23.232145Z, end-time: 2024-03-12T09:26:49.200547Z, duration: 25, exit-code: 0
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/envs/latest/bin/python -m pip install --upgrade --no-cache-dir jinja2==2.11.3 markupsafe==2.0.1 Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1
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Building wheels for collected packages: mock, pillow
  Building wheel for mock (setup.py): started
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Successfully built mock pillow
Installing collected packages: snowballstemmer, pytz, Pygments, mock, docutils, urllib3, sphinxcontrib-serializinghtml, six, setuptools, pillow, packaging, markupsafe, imagesize, idna, future, charset-normalizer, certifi, babel, alabaster, sphinxcontrib-websupport, requests, jinja2, commonmark, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark
  Attempting uninstall: setuptools
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Successfully installed Pygments-2.3.1 alabaster-0.7.13 babel-2.14.0 certifi-2024.2.2 charset-normalizer-3.3.2 commonmark-0.8.1 docutils-0.14 future-1.0.0 idna-3.6 imagesize-1.4.1 jinja2-2.11.3 markupsafe-2.0.1 mock-1.0.1 packaging-24.0 pillow-5.4.1 pytz-2024.1 readthedocs-sphinx-ext-1.0.4 recommonmark-0.5.0 requests-2.31.0 setuptools-41.0.1 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-2.2.1

[rtd-command-info] start-time: 2024-03-12T09:26:49.293134Z, end-time: 2024-03-12T09:26:50.591583Z, duration: 1, exit-code: 0
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/envs/latest/bin/python -m pip install --exists-action=w --no-cache-dir -r requirements.txt
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Installing collected packages: urllib3
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[rtd-command-info] start-time: 2024-03-12T09:26:51.392175Z, end-time: 2024-03-12T09:26:51.460884Z, duration: 0, exit-code: 0
cat source/conf.py
# -*- coding: utf-8 -*-
#
# AGIPD User Manual documentation build configuration file, created by
# sphinx-quickstart on Mon Apr 10 12:38:08 2017.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

import sys
import os

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#sys.path.insert(0, os.path.abspath('.'))

# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#needs_sphinx = '1.0'
import sys
import os
html_theme = 'sphinx_rtd_theme'
# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.autodoc',
    'sphinx.ext.intersphinx',
    'sphinx.ext.todo',
    'sphinx.ext.mathjax',
    'sphinx.ext.ifconfig',
]

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix of source filenames.
source_suffix = '.rst'

# The encoding of source files.
#source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = u'AGIPD at MID User Manual'
copyright = u'2017, European XFEL Detector Group'
authors = u'Jolanta Sztuk-Dambietz, Natascha Raab'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
version = '0.4'
# The full version, including alpha/beta/rc tags.
release = '1.0 alpha'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#language = None

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#today = ''
# Else, today_fmt is used as the format for a strftime call.
#today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
exclude_patterns = []

# The reST default role (used for this markup: `text`) to use for all
# documents.
#default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
#add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
show_authors = True

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# A list of ignored prefixes for module index sorting.
#modindex_common_prefix = []

# If true, keep warnings as "system message" paragraphs in the built documents.
#keep_warnings = False

# If true, references (figures) should be numbered and refered to by number
numfig = True


# -- Options for HTML output ----------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
html_theme = 'default'

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
#html_theme_options = {}

# Add any paths that contain custom themes here, relative to this directory.
#html_theme_path = []

# The name for this set of Sphinx documents.  If None, it defaults to
# "<project> v<release> documentation".
#html_title = None

# A shorter title for the navigation bar.  Default is the same as html_title.
#html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#html_logo = None

# The name of an image file (within the static path) to use as favicon of the
# docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#html_favicon = None

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

# Add any extra paths that contain custom files (such as robots.txt or
# .htaccess) here, relative to this directory. These files are copied
# directly to the root of the documentation.
#html_extra_path = []

# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
# using the given strftime format.
#html_last_updated_fmt = '%b %d, %Y'

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
#html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to
# template names.
#html_additional_pages = {}

# If false, no module index is generated.
#html_domain_indices = True

# If false, no index is generated.
#html_use_index = True

# If true, the index is split into individual pages for each letter.
#html_split_index = False

# If true, links to the reST sources are added to the pages.
#html_show_sourcelink = True

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
#html_show_sphinx = True

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
#html_show_copyright = True

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
#html_use_opensearch = ''

# This is the file name suffix for HTML files (e.g. ".xhtml").
#html_file_suffix = None

# Output file base name for HTML help builder.
htmlhelp_basename = 'SPBAGIPDUserManualdoc'


# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
# The paper size ('letterpaper' or 'a4paper').
#'papersize': 'letterpaper',

# The font size ('10pt', '11pt' or '12pt').
#'pointsize': '10pt',

# Additional stuff for the LaTeX preamble.
#'preamble': '',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
  ('index', 'MID-AGIPD_UserManual.tex', u'MID AGIPD User Manual Documentation',
   u'European XFEL Detector Group', 'manual'),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
#latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#latex_use_parts = False

# If true, show page references after internal links.
#latex_show_pagerefs = False

# If true, show URL addresses after external links.
#latex_show_urls = False

# Documents to append as an appendix to all manuals.
#latex_appendices = []

# If false, no module index is generated.
#latex_domain_indices = True


# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    ('index', 'agipdusermanual', u'AGIPD User Manual Documentation',
     [u'European XFEL Detector Group'], 1)
]

# If true, show URL addresses after external links.
#man_show_urls = False


# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
  ('index', 'MIDAGIPDUserManual', u'MIDAGIPD User Manual Documentation',
   u'European XFEL Detector Group', 'MIDAGIPDUserManual', 'One line description of project.',
   'Miscellaneous'),
]

# Documents to append as an appendix to all manuals.
#texinfo_appendices = []

# If false, no module index is generated.
#texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.
#texinfo_show_urls = 'footnote'

# If true, do not generate a @detailmenu in the "Top" node's menu.
#texinfo_no_detailmenu = False


# Example configuration for intersphinx: refer to the Python standard library.
intersphinx_mapping = {'http://docs.python.org/': None}




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#


import importlib
import sys
import os.path
from six import string_types

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
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        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
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        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    theme = importlib.import_module('sphinx_rtd_theme')
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'http://rtd.xfel.eu/websupport'
    websupport2_static_url = '/static/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "latest",
    'version_slug': "latest",
    'MEDIA_URL': "media/",
    'STATIC_URL': "/static/",
    'PRODUCTION_DOMAIN': "rtd.xfel.eu",
    'versions': [
    ("latest", "/en/latest/"),
    ],
    'downloads': [ 
    ("pdf", "//rtd.xfel.eu/downloads/agipd-manual-mid/latest/pdf/"),
    ("html", "//rtd.xfel.eu/downloads/agipd-manual-mid/latest/htmlzip/"),
    ("epub", "//rtd.xfel.eu/downloads/agipd-manual-mid/latest/epub/"),
    ],
    'subprojects': [ 
    ],
    'slug': 'agipd-manual-mid',
    'name': u'AGIPD Manual MID',
    'rtd_language': u'en',
    'programming_language': u'words',
    'canonical_url': 'http://rtd.xfel.eu/docs/agipd-manual-mid/en/latest/',
    'analytics_code': 'None',
    'single_version': False,
    'conf_py_path': '/source/',
    'api_host': 'http://rtd.xfel.eu',
    'github_user': 'None',
    'proxied_api_host': '/_',
    'github_repo': 'None',
    'github_version': 'master',
    'display_github': False,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'master',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'master',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'docsearch_disabled': False,
    'user_analytics_code': '',
    'global_analytics_code': 'None',
    'commit': '016923e2',
}




if 'html_context' in globals():
    
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else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
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    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

# Add External version warning banner to the external version documentation
if 'branch' == 'external':
    extensions.insert(1, "readthedocs_ext.external_version_warning")

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
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    project_language in ('zh_CN', 'zh_TW'),
])

japanese = any([
    language_user == 'ja',
    project_language == 'ja',
])

if chinese:
    latex_engine = latex_engine_user or 'xelatex'

    latex_elements_rtd = {
        'preamble': '\\usepackage[UTF8]{ctex}\n',
    }
    latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
    latex_engine = latex_engine_user or 'platex'

# Make sure our build directory is always excluded
exclude_patterns = globals().get('exclude_patterns', [])
exclude_patterns.extend(['_build'])

[rtd-command-info] start-time: 2024-03-12T09:26:51.553476Z, end-time: 2024-03-12T09:26:53.679538Z, duration: 2, exit-code: 0
python /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/envs/latest/bin/sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html
Running Sphinx v1.8.6
loading translations [en]... done
making output directory...
loading intersphinx inventory from http://docs.python.org/objects.inv...
intersphinx inventory has moved: http://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv
building [mo]: targets for 0 po files that are out of date
building [readthedocs]: targets for 6 source files that are out of date
updating environment: 6 added, 0 changed, 0 removed
reading sources... [ 16%] OCD_guidelines
reading sources... [ 33%] index
reading sources... [ 50%] introduction
reading sources... [ 66%] starting_detector_mid
reading sources... [ 83%] stopping_detector
reading sources... [100%] troubleshooting
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/OCD_guidelines.rst:1: WARNING: Title overline too short.

**************
OCD Guidelines.
**************
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/OCD_guidelines.rst:13: WARNING: Bullet list ends without a blank line; unexpected unindent.
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/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/OCD_guidelines.rst:29: WARNING: Unexpected indentation.
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/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to nonexisting document 'appendix'
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/introduction.rst:33: WARNING: Unknown directive type "comment".

.. comment::
 * Online preview:  https://rtd.xfel.eu/docs/online-calibration-tools/en/latest/#/
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:52: WARNING: Figure caption must be a paragraph or empty comment.

.. figure:: ./images/screenshots/agipd_overviewMID2020_.png
   :width: 110 %

    The main overview scene for AGIPD
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:106: WARNING: Bullet list ends without a blank line; unexpected unindent.
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:179: WARNING: Unknown directive type "coment".

.. coment::
        Currently the cooling cycle of the Julabo chiller is still leaky. Therefore in the beginning of a shift it should be checked in the rack room, whether the chiller displayes warning 40 (liquid level too low) and has to be refilled.
        This warning will not appear in Karabo, one has to go to the chiller to check! To refill the chiller the detector has to be warmed up.
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:313: WARNING: Bullet list ends without a blank line; unexpected unindent.
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:376: WARNING: Inline interpreted text or phrase reference start-string without end-string.
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:376: WARNING: Inline interpreted text or phrase reference start-string without end-string.
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/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:390: WARNING: Inline interpreted text or phrase reference start-string without end-string.
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:603: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:638: WARNING: Title level inconsistent:

--------------
Prerequisites:
--------------
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:659: WARNING: Title level inconsistent:

-----------------
The scan tool(s):
-----------------
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:679: WARNING: Title level inconsistent:

-----------------
Post processing
-----------------
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/stopping_detector.rst:68: WARNING: Title underline too short.

Switching off Huber Unichiller
--------------------------
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/stopping_detector.rst:68: WARNING: Title underline too short.

Switching off Huber Unichiller
--------------------------
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:48: WARNING: Inline emphasis start-string without end-string.
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:69: WARNING: Unknown directive type "comment".

.. comment::

        (see picture below)

        .. _u901:

        .. figure:: ./images/screenshots/mpod_u901_trip_.png
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:139: WARNING: Unknown directive type "coment".

.. coment::
        Automatic power procedure failed during powering of the asics
        --------------------------------------------------------------

        If the automatic procedure fails and goes to the state 'unknown' when trying to switch on the asics:

        * check the error displayed by the procedure:

        * if the observed error is: Failed on task run_det because: <class 'karabo.middlelayer_api.exceptions.KaraboError'>Calling slot "start" not allowed in state "State.OFF"

                1. Reinstante SPB_IRU_AGIPD1M1/MDL/FPGA_COMP.
                2. Disconnect, reconnect and reset,
                3. Configure the detector again
                4. Power the Asics manually and push data
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:248: WARNING: Title underline too short.

Verify with Rundeck, that the detector is not sending data
__________________________________________
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:248: WARNING: Title underline too short.

Verify with Rundeck, that the detector is not sending data
__________________________________________
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:253: WARNING: Enumerated list ends without a blank line; unexpected unindent.
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Mosaic like image appears on the preview
______________________________
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:336: WARNING: Title underline too short.

Mosaic like image appears on the preview
______________________________
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 16%] OCD_guidelines
writing output... [ 33%] index
writing output... [ 50%] introduction
writing output... [ 66%] starting_detector_mid
writing output... [ 83%] stopping_detector
writing output... [100%] troubleshooting
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:320: WARNING: undefined label: https://in.xfel.eu/readthedocs/docs/detector-support/en/latest/diagnosis/generic/cal_online_troubleshooting.html (if the link has no caption the label must precede a section header)
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:332: WARNING: undefined label: https://in.xfel.eu/readthedocs/docs/detector-support/en/latest/diagnosis/generic/cal_online_troubleshooting.html (if the link has no caption the label must precede a section header)
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:456: WARNING: undefined label: cooling_issues (if the link has no caption the label must precede a section header)
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:456: WARNING: undefined label: interlock_issues (if the link has no caption the label must precede a section header)

/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:464: WARNING: undefined label: interlock_issues (if the link has no caption the label must precede a section header)
generating indices... genindex
writing additional pages... search
copying images... [  6%] ./images/agipdinfrastructure.jpg
copying images... [ 13%] ./images/agipd_naming.png
copying images... [ 20%] ./images/agipd_modules.png
copying images... [ 26%] ./images/agipdconfigexample_mid.png
copying images... [ 33%] ./images/screenshots/agipd_overviewMID2020_.png
copying images... [ 40%] ./images/screenshots/agipd_combined_control2020.png
copying images... [ 46%] ./images/huber_wing_chiller.jpg
copying images... [ 53%] ./images/Huber_display.jpg
copying images... [ 60%] ./images/screenshots/agipd-power_23.02.png
copying images... [ 66%] ./images/screenshots/Screenshot_h5view.png
copying images... [ 73%] images/timing_scan_example.PNG
copying images... [ 80%] ./images/screenshots/Screenshot_tags_.png
copying images... [ 86%] ./images/mosaicagipdmid.png
copying images... [ 93%] ./images/grafanapanelspb.png
copying images... [100%] ./images/grafanatokarabomid.png

copying static files... done
WARNING: html_static_path entry '/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/_static' does not exist
copying readthedocs static files... done
copying searchtools... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 65 warnings.

The HTML pages are in _build/html.

[rtd-command-info] start-time: 2024-03-12T09:26:53.819955Z, end-time: 2024-03-12T09:26:55.855280Z, duration: 2, exit-code: 0
python /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/envs/latest/bin/sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia
Running Sphinx v1.8.6
loading translations [en]... done
making output directory...
loading intersphinx inventory from http://docs.python.org/objects.inv...
intersphinx inventory has moved: http://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv
building [mo]: targets for 0 po files that are out of date
building [readthedocssinglehtmllocalmedia]: all documents
updating environment: 6 added, 0 changed, 0 removed
reading sources... [ 16%] OCD_guidelines
reading sources... [ 33%] index
reading sources... [ 50%] introduction
reading sources... [ 66%] starting_detector_mid
reading sources... [ 83%] stopping_detector
reading sources... [100%] troubleshooting

/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/OCD_guidelines.rst:1: WARNING: Title overline too short.

**************
OCD Guidelines.
**************
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/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/index.rst:11: WARNING: toctree contains reference to nonexisting document 'appendix'
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/introduction.rst:33: WARNING: Unknown directive type "comment".

.. comment::
 * Online preview:  https://rtd.xfel.eu/docs/online-calibration-tools/en/latest/#/
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:52: WARNING: Figure caption must be a paragraph or empty comment.

.. figure:: ./images/screenshots/agipd_overviewMID2020_.png
   :width: 110 %

    The main overview scene for AGIPD
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:106: WARNING: Bullet list ends without a blank line; unexpected unindent.
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:179: WARNING: Unknown directive type "coment".

.. coment::
        Currently the cooling cycle of the Julabo chiller is still leaky. Therefore in the beginning of a shift it should be checked in the rack room, whether the chiller displayes warning 40 (liquid level too low) and has to be refilled.
        This warning will not appear in Karabo, one has to go to the chiller to check! To refill the chiller the detector has to be warmed up.
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--------------
Prerequisites:
--------------
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:659: WARNING: Title level inconsistent:

-----------------
The scan tool(s):
-----------------
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/starting_detector_mid.rst:679: WARNING: Title level inconsistent:

-----------------
Post processing
-----------------
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/stopping_detector.rst:68: WARNING: Title underline too short.

Switching off Huber Unichiller
--------------------------
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/stopping_detector.rst:68: WARNING: Title underline too short.

Switching off Huber Unichiller
--------------------------
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/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:69: WARNING: Unknown directive type "comment".

.. comment::

        (see picture below)

        .. _u901:

        .. figure:: ./images/screenshots/mpod_u901_trip_.png
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:139: WARNING: Unknown directive type "coment".

.. coment::
        Automatic power procedure failed during powering of the asics
        --------------------------------------------------------------

        If the automatic procedure fails and goes to the state 'unknown' when trying to switch on the asics:

        * check the error displayed by the procedure:

        * if the observed error is: Failed on task run_det because: <class 'karabo.middlelayer_api.exceptions.KaraboError'>Calling slot "start" not allowed in state "State.OFF"

                1. Reinstante SPB_IRU_AGIPD1M1/MDL/FPGA_COMP.
                2. Disconnect, reconnect and reset,
                3. Configure the detector again
                4. Power the Asics manually and push data
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:248: WARNING: Title underline too short.

Verify with Rundeck, that the detector is not sending data
__________________________________________
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:248: WARNING: Title underline too short.

Verify with Rundeck, that the detector is not sending data
__________________________________________
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:253: WARNING: Enumerated list ends without a blank line; unexpected unindent.
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Mosaic like image appears on the preview
______________________________
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:336: WARNING: Title underline too short.

Mosaic like image appears on the preview
______________________________
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
assembling single document... introduction starting_detector_mid stopping_detector troubleshooting OCD_guidelines /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:320: WARNING: undefined label: https://in.xfel.eu/readthedocs/docs/detector-support/en/latest/diagnosis/generic/cal_online_troubleshooting.html (if the link has no caption the label must precede a section header)
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:332: WARNING: undefined label: https://in.xfel.eu/readthedocs/docs/detector-support/en/latest/diagnosis/generic/cal_online_troubleshooting.html (if the link has no caption the label must precede a section header)
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:456: WARNING: undefined label: cooling_issues (if the link has no caption the label must precede a section header)
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writing... done
writing additional files...
copying images... [  6%] ./images/agipdinfrastructure.jpg
copying images... [ 13%] ./images/agipd_naming.png
copying images... [ 20%] ./images/agipd_modules.png
copying images... [ 26%] ./images/agipdconfigexample_mid.png
copying images... [ 33%] ./images/screenshots/agipd_overviewMID2020_.png
copying images... [ 40%] ./images/screenshots/agipd_combined_control2020.png
copying images... [ 46%] ./images/huber_wing_chiller.jpg
copying images... [ 53%] ./images/Huber_display.jpg
copying images... [ 60%] ./images/screenshots/agipd-power_23.02.png
copying images... [ 66%] ./images/screenshots/Screenshot_h5view.png
copying images... [ 73%] images/timing_scan_example.PNG
copying images... [ 80%] ./images/screenshots/Screenshot_tags_.png
copying images... [ 86%] ./images/mosaicagipdmid.png
copying images... [ 93%] ./images/grafanapanelspb.png
copying images... [100%] ./images/grafanatokarabomid.png

copying static files... done
WARNING: html_static_path entry '/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/_static' does not exist
copying readthedocs static files... done
copying extra files... done
dumping object inventory... done
build succeeded, 65 warnings.

The HTML page is in _build/localmedia.

[rtd-command-info] start-time: 2024-03-12T09:26:56.010623Z, end-time: 2024-03-12T09:26:57.878650Z, duration: 1, exit-code: 0
python /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/envs/latest/bin/sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex
Running Sphinx v1.8.6
loading translations [en]... done
making output directory...
loading intersphinx inventory from http://docs.python.org/objects.inv...
intersphinx inventory has moved: http://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv
building [mo]: targets for 0 po files that are out of date
building [latex]: all documents
updating environment: 6 added, 0 changed, 0 removed
reading sources... [ 16%] OCD_guidelines
reading sources... [ 33%] index
reading sources... [ 50%] introduction
reading sources... [ 66%] starting_detector_mid
reading sources... [ 83%] stopping_detector
reading sources... [100%] troubleshooting

/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/OCD_guidelines.rst:1: WARNING: Title overline too short.

**************
OCD Guidelines.
**************
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/OCD_guidelines.rst:13: WARNING: Bullet list ends without a blank line; unexpected unindent.
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.. comment::
 * Online preview:  https://rtd.xfel.eu/docs/online-calibration-tools/en/latest/#/
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.. figure:: ./images/screenshots/agipd_overviewMID2020_.png
   :width: 110 %

    The main overview scene for AGIPD
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.. coment::
        Currently the cooling cycle of the Julabo chiller is still leaky. Therefore in the beginning of a shift it should be checked in the rack room, whether the chiller displayes warning 40 (liquid level too low) and has to be refilled.
        This warning will not appear in Karabo, one has to go to the chiller to check! To refill the chiller the detector has to be warmed up.
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--------------
Prerequisites:
--------------
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-----------------
The scan tool(s):
-----------------
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-----------------
Post processing
-----------------
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Switching off Huber Unichiller
--------------------------
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--------------------------
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.. comment::

        (see picture below)

        .. _u901:

        .. figure:: ./images/screenshots/mpod_u901_trip_.png
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.. coment::
        Automatic power procedure failed during powering of the asics
        --------------------------------------------------------------

        If the automatic procedure fails and goes to the state 'unknown' when trying to switch on the asics:

        * check the error displayed by the procedure:

        * if the observed error is: Failed on task run_det because: <class 'karabo.middlelayer_api.exceptions.KaraboError'>Calling slot "start" not allowed in state "State.OFF"

                1. Reinstante SPB_IRU_AGIPD1M1/MDL/FPGA_COMP.
                2. Disconnect, reconnect and reset,
                3. Configure the detector again
                4. Power the Asics manually and push data
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Verify with Rundeck, that the detector is not sending data
__________________________________________
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Verify with Rundeck, that the detector is not sending data
__________________________________________
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______________________________
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______________________________
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$makeindex = 'makeindex -s python.ist %O -o %D %S';
add_cus_dep( "glo", "gls", 0, "makeglo" );
sub makeglo {
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}

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**************
OCD Guidelines.
**************
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.. comment::
 * Online preview:  https://rtd.xfel.eu/docs/online-calibration-tools/en/latest/#/
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.. figure:: ./images/screenshots/agipd_overviewMID2020_.png
   :width: 110 %

    The main overview scene for AGIPD
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.. coment::
        Currently the cooling cycle of the Julabo chiller is still leaky. Therefore in the beginning of a shift it should be checked in the rack room, whether the chiller displayes warning 40 (liquid level too low) and has to be refilled.
        This warning will not appear in Karabo, one has to go to the chiller to check! To refill the chiller the detector has to be warmed up.
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--------------
Prerequisites:
--------------
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-----------------
The scan tool(s):
-----------------
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-----------------
Post processing
-----------------
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Switching off Huber Unichiller
--------------------------
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/stopping_detector.rst:68: WARNING: Title underline too short.

Switching off Huber Unichiller
--------------------------
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:48: WARNING: Inline emphasis start-string without end-string.
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:69: WARNING: Unknown directive type "comment".

.. comment::

        (see picture below)

        .. _u901:

        .. figure:: ./images/screenshots/mpod_u901_trip_.png
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:139: WARNING: Unknown directive type "coment".

.. coment::
        Automatic power procedure failed during powering of the asics
        --------------------------------------------------------------

        If the automatic procedure fails and goes to the state 'unknown' when trying to switch on the asics:

        * check the error displayed by the procedure:

        * if the observed error is: Failed on task run_det because: <class 'karabo.middlelayer_api.exceptions.KaraboError'>Calling slot "start" not allowed in state "State.OFF"

                1. Reinstante SPB_IRU_AGIPD1M1/MDL/FPGA_COMP.
                2. Disconnect, reconnect and reset,
                3. Configure the detector again
                4. Power the Asics manually and push data
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Verify with Rundeck, that the detector is not sending data
__________________________________________
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:248: WARNING: Title underline too short.

Verify with Rundeck, that the detector is not sending data
__________________________________________
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:253: WARNING: Enumerated list ends without a blank line; unexpected unindent.
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:254: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:255: WARNING: Enumerated list ends without a blank line; unexpected unindent.
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:257: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:336: WARNING: Title underline too short.

Mosaic like image appears on the preview
______________________________
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Mosaic like image appears on the preview
______________________________
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 16%] OCD_guidelines
writing output... [ 33%] index
writing output... [ 50%] introduction
writing output... [ 66%] starting_detector_mid
writing output... [ 83%] stopping_detector
writing output... [100%] troubleshooting

/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:320: WARNING: undefined label: https://in.xfel.eu/readthedocs/docs/detector-support/en/latest/diagnosis/generic/cal_online_troubleshooting.html (if the link has no caption the label must precede a section header)
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:332: WARNING: undefined label: https://in.xfel.eu/readthedocs/docs/detector-support/en/latest/diagnosis/generic/cal_online_troubleshooting.html (if the link has no caption the label must precede a section header)
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:456: WARNING: undefined label: cooling_issues (if the link has no caption the label must precede a section header)
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:456: WARNING: undefined label: interlock_issues (if the link has no caption the label must precede a section header)
/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/troubleshooting.rst:464: WARNING: undefined label: interlock_issues (if the link has no caption the label must precede a section header)
generating indices... genindex
writing additional pages...
copying images... [  6%] ./images/agipdinfrastructure.jpg
copying images... [ 13%] ./images/agipd_naming.png
copying images... [ 20%] ./images/agipd_modules.png
copying images... [ 26%] ./images/agipdconfigexample_mid.png
copying images... [ 33%] ./images/screenshots/agipd_overviewMID2020_.png
copying images... [ 40%] ./images/screenshots/agipd_combined_control2020.png
copying images... [ 46%] ./images/huber_wing_chiller.jpg
copying images... [ 53%] ./images/Huber_display.jpg
copying images... [ 60%] ./images/screenshots/agipd-power_23.02.png
copying images... [ 66%] ./images/screenshots/Screenshot_h5view.png
copying images... [ 73%] images/timing_scan_example.PNG
copying images... [ 80%] ./images/screenshots/Screenshot_tags_.png
copying images... [ 86%] ./images/mosaicagipdmid.png
copying images... [ 93%] ./images/grafanapanelspb.png
copying images... [100%] ./images/grafanatokarabomid.png

copying static files... done
WARNING: html_static_path entry '/usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/_static' does not exist
copying extra files... done
writing mimetype file...
writing META-INF/container.xml file...
writing content.opf file...
WARNING: unknown mimetype for _images/timing_scan_example.PNG, ignoring
writing nav.xhtml file...
writing toc.ncx file...
writing AGIPDatMIDUserManual.epub file...
build succeeded, 66 warnings.

The ePub file is in _build/epub.

[rtd-command-info] start-time: 2024-03-12T09:27:10.381881Z, end-time: 2024-03-12T09:27:10.474803Z, duration: 0, exit-code: 0
mv -f /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/checkouts/latest/source/_build/epub/AGIPDatMIDUserManual.epub /usr/src/app/checkouts/readthedocs.org/user_builds/agipd-manual-mid/artifacts/latest/sphinx_epub/agipd-manual-mid.epub