Read the Docs build information Build id: 28375 Project: scs-toolbox Version: latest Commit: 59b9b21a4b0ad08ae9862fa6eb88d7c57aea12c7 Date: 2024-06-05T22:38:14.481455Z State: finished Success: True [rtd-command-info] start-time: 2024-06-05T22:38:15.737595Z, end-time: 2024-06-05T22:38:17.757135Z, duration: 2, exit-code: 0 git clone --no-single-branch --depth 50 https://git.xfel.eu/SCS/ToolBox.git . Cloning into '.'... [rtd-command-info] start-time: 2024-06-05T22:38:18.204930Z, end-time: 2024-06-05T22:38:18.340885Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 59b9b21 feat(hRIXS): add MaranaX class for parallelized centroiding [rtd-command-info] start-time: 2024-06-05T22:38:18.427773Z, end-time: 2024-06-05T22:38:18.489482Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2024-06-05T22:38:20.686277Z, end-time: 2024-06-05T22:38:25.211760Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/bin/python3.7 Also creating executable in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2024-06-05T22:38:25.303151Z, end-time: 2024-06-05T22:38:26.196285Z, duration: 0, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/bin/python -m pip install --upgrade --no-cache-dir pip Requirement already satisfied: pip in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (24.0) [rtd-command-info] start-time: 2024-06-05T22:38:26.282209Z, end-time: 2024-06-05T22:38:34.308252Z, duration: 8, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/bin/python -m pip install --upgrade --no-cache-dir jinja2==2.11.3 markupsafe==2.0.1 Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting jinja2==2.11.3 Downloading Jinja2-2.11.3-py2.py3-none-any.whl.metadata (3.5 kB) Collecting markupsafe==2.0.1 Downloading MarkupSafe-2.0.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl.metadata (3.2 kB) Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl.metadata (1.5 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl.metadata (3.3 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl.metadata (2.3 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 861.9/861.9 kB 16.9 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl.metadata (4.5 kB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.13-py3-none-any.whl.metadata (3.0 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl.metadata (5.6 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl.metadata (463 bytes) Collecting sphinx<2 Downloading Sphinx-1.8.6-py2.py3-none-any.whl.metadata (7.3 kB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl.metadata (3.0 kB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.4-py2.py3-none-any.whl.metadata (1.4 kB) Collecting future (from commonmark==0.8.1) Downloading future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting six>=1.5 (from sphinx<2) Downloading six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) Collecting snowballstemmer>=1.1 (from sphinx<2) Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl.metadata (6.5 kB) Collecting babel!=2.0,>=1.3 (from sphinx<2) Downloading Babel-2.14.0-py3-none-any.whl.metadata (1.6 kB) Collecting imagesize (from sphinx<2) Downloading imagesize-1.4.1-py2.py3-none-any.whl.metadata (1.5 kB) Collecting requests>=2.0.0 (from sphinx<2) Downloading 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readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark Attempting uninstall: setuptools Found existing installation: setuptools 68.0.0 Uninstalling setuptools-68.0.0: Successfully uninstalled setuptools-68.0.0 Successfully installed Pygments-2.3.1 alabaster-0.7.13 babel-2.14.0 certifi-2024.6.2 charset-normalizer-3.3.2 commonmark-0.8.1 docutils-0.14 future-1.0.0 idna-3.7 imagesize-1.4.1 jinja2-2.11.3 markupsafe-2.0.1 mock-1.0.1 packaging-24.0 pillow-5.4.1 pytz-2024.1 readthedocs-sphinx-ext-1.0.4 recommonmark-0.5.0 requests-2.31.0 setuptools-41.0.1 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-2.0.7 [rtd-command-info] start-time: 2024-06-05T22:38:34.395998Z, end-time: 2024-06-05T22:38:45.210856Z, duration: 10, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/bin/python -m pip install --exists-action=w --no-cache-dir -r doc/requirements.txt Requirement 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typing-extensions, typed-ast, traitlets, tornado, tinycss2, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, soupsieve, pyzmq, PyYAML, python-dateutil, pyrsistent, Pygments, pkgutil-resolve-name, pandocfilters, nest-asyncio, mistune, lazy-object-proxy, jupyterlab-pygments, Jinja2, entrypoints, docutils, defusedxml, bleach, anyascii, jupyter-core, importlib-resources, importlib-metadata, beautifulsoup4, astroid, sphinx, jupyter-client, attrs, sphinx-autoapi, jsonschema, autoapi, nbformat, nbclient, nbconvert, nbsphinx Attempting uninstall: urllib3 Found existing installation: urllib3 2.0.7 Uninstalling urllib3-2.0.7: Successfully uninstalled urllib3-2.0.7 Attempting uninstall: Pygments Found existing installation: Pygments 2.3.1 Uninstalling Pygments-2.3.1: Successfully uninstalled Pygments-2.3.1 Attempting uninstall: Jinja2 Found existing installation: Jinja2 2.11.3 Uninstalling Jinja2-2.11.3: Successfully uninstalled Jinja2-2.11.3 Attempting uninstall: docutils Found existing installation: docutils 0.14 Uninstalling docutils-0.14: Successfully uninstalled docutils-0.14 Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.6 Uninstalling Sphinx-1.8.6: Successfully uninstalled Sphinx-1.8.6 Successfully installed Jinja2-3.1.4 PyYAML-6.0.1 Pygments-2.17.2 anyascii-0.3.2 astroid-2.15.8 attrs-23.2.0 autoapi-2.0.1 beautifulsoup4-4.12.3 bleach-6.0.0 defusedxml-0.7.1 docutils-0.19 entrypoints-0.4 fastjsonschema-2.19.1 importlib-metadata-6.7.0 importlib-resources-5.12.0 jsonschema-4.17.3 jupyter-client-7.4.9 jupyter-core-4.12.0 jupyterlab-pygments-0.2.2 lazy-object-proxy-1.9.0 mistune-3.0.2 nbclient-0.7.4 nbconvert-7.6.0 nbformat-5.8.0 nbsphinx-0.9.4 nest-asyncio-1.6.0 pandocfilters-1.5.1 pkgutil-resolve-name-1.3.10 pyrsistent-0.19.3 python-dateutil-2.9.0.post0 pyzmq-26.0.3 soupsieve-2.4.1 sphinx-5.3.0 sphinx-autoapi-2.1.1 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 tinycss2-1.2.1 tornado-6.2 traitlets-5.9.0 typed-ast-1.5.5 typing-extensions-4.7.1 urllib3-1.26.18 webencodings-0.5.1 wrapt-1.16.0 zipp-3.15.0 [rtd-command-info] start-time: 2024-06-05T22:38:45.914128Z, end-time: 2024-06-05T22:38:45.969654Z, duration: 0, exit-code: 0 cat doc/conf.py # -*- coding: utf-8 -*- # # Configuration file for the Sphinx documentation builder. # # This file does only contain a selection of the most common options. For a # full list see the documentation: # http://www.sphinx-doc.org/en/master/config # -- Path setup -------------------------------------------------------------- # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # import os import sys sys.path.insert(0, os.path.abspath('..')) import sphinx_rtd_theme # -- Project information ----------------------------------------------------- project = 'SCS Toolbox' copyright = '2021, SCS' author = 'SCS' # The short X.Y version version = '' # The full version, including alpha/beta/rc tags release = '' # -- General configuration --------------------------------------------------- # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.viewcode', 'sphinx.ext.coverage', 'sphinx.ext.napoleon', 'sphinx.ext.extlinks', 'autoapi.extension', 'sphinx_rtd_theme', 'nbsphinx' ] nbsphinx_execute = 'never' autoapi_dirs = ['../src/toolbox_scs'] autoapi_ignore = ['*/deprecated/*'] extlinks = {'issue': ('https://git.xfel.eu/SCS/ToolBox/-/issues/%s', 'issue:%s'), 'mr': ('https://git.xfel.eu/SCS/ToolBox/-/merge_requests/%s', 'MR:%s'), 'commit': ('https://git.xfel.eu/SCS/ToolBox/-/commit/%s', 'commit:%s') } # Don't add .txt suffix to source files: html_sourcelink_suffix = '' # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The master toctree document. master_doc = 'index' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This pattern also affects html_static_path and html_extra_path. exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The name of the Pygments (syntax highlighting) style to use. pygments_style = None # -- Options for HTML output ------------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # #html_theme = 'alabaster' html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. # # html_theme_options = {} # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] # Custom sidebar templates, must be a dictionary that maps document names # to template names. # # The default sidebars (for documents that don't match any pattern) are # defined by theme itself. Builtin themes are using these templates by # default: ``['localtoc.html', 'relations.html', 'sourcelink.html', # 'searchbox.html']``. # # html_sidebars = {} # -- Options for HTMLHelp output --------------------------------------------- # Output file base name for HTML help builder. htmlhelp_basename = 'SCSToolboxdoc' # -- Options for LaTeX output ------------------------------------------------ latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'SCSToolbox.tex', 'SCS Toolbox Documentation', 'SCS', 'manual'), ] # -- Options for manual page output ------------------------------------------ # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'scstoolbox', 'SCS Toolbox Documentation', [author], 1) ] # -- Options for Texinfo output ---------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'SCSToolbox', 'SCS Toolbox Documentation', author, 'SCSToolbox', 'One line description of project.', 'Miscellaneous'), ] # -- Options for Epub output ------------------------------------------------- # Bibliographic Dublin Core info. epub_title = project # The unique identifier of the text. This can be a ISBN number # or the project homepage. # # epub_identifier = '' # A unique identification for the text. # # epub_uid = '' # A list of files that should not be packed into the epub file. epub_exclude_files = ['search.html'] # -- Extension configuration ------------------------------------------------- ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'http://rtd.xfel.eu/websupport' websupport2_static_url = '/static/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "media/", 'STATIC_URL': "/static/", 'PRODUCTION_DOMAIN': "rtd.xfel.eu", 'versions': [ ("latest", "/en/latest/"), ("fix-ci-autoapi-failure", "/en/fix-ci-autoapi-failure/"), ], 'downloads': [ ("pdf", "//rtd.xfel.eu/downloads/scs-toolbox/latest/pdf/"), ], 'subprojects': [ ], 'slug': 'scs-toolbox', 'name': u'SCS ToolBox', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'http://rtd.xfel.eu/docs/scs-toolbox/en/latest/', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/doc/', 'api_host': 'http://rtd.xfel.eu', 'github_user': 'None', 'proxied_api_host': '/_', 'github_repo': 'None', 'github_version': 'master', 'display_github': False, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': '', 'global_analytics_code': 'None', 'commit': '59b9b21a', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2024-06-05T22:38:46.058319Z, end-time: 2024-06-05T22:39:20.397638Z, duration: 34, exit-code: 0 python /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/bin/sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v5.3.0 WARNING: Invalid configuration value found: 'language = None'. 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Continuing with doubts... nbconvert.utils.pandoc.check_pandoc_version() /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:3433: CRITICAL: Title level inconsistent: Peak fluence calculation using knife-edge scans: ------------------------------------------------ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:3451: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:3451: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:3506: CRITICAL: Title level inconsistent: Load scanning motor and laser photodiode data ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:3572: CRITICAL: Title level inconsistent: Check diode traces and region of integration for peak calculations ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:5807: CRITICAL: Title level inconsistent: Plot intensity vs. knife-edge positions, fit with erfc function ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:7990: CRITICAL: Title level inconsistent: OL power measurement ^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:8016: CRITICAL: Title level inconsistent: Fluence vs. laser power ^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:9096: CRITICAL: Title level inconsistent: Load runs with horizontal and vertical scans, normalize the transmitted signal by XGM ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:9676: CRITICAL: Title level inconsistent: Fit scan to erfc function and plot ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:11863: CRITICAL: Title level inconsistent: Load XGM data ^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:12357: CRITICAL: Title level inconsistent: Calibrate XGM fast data using photon flux and plot ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/base/knife_edge/index.rst:4: WARNING: duplicate object description of toolbox_scs.base.knife_edge, other instance in autoapi/toolbox_scs/base/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/dssc_misc/index.rst:71: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/dssc_misc/index.rst:30: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/fccd/index.rst:6: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:7: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/index.rst:642: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/index.rst:30: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/index.rst:7: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:717: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:30: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1578: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1595: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:29: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1716: WARNING: duplicate object description of toolbox_scs.__all__, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1727: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:8: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1812: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1869: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1880: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1893: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2007: WARNING: duplicate object description of toolbox_scs.__all__, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2018: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2025: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2041: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2120: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2196: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2267: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:8: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2287: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2398: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2421: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2470: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2526: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2541: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2544: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2547: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2566: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2687: WARNING: duplicate object description of toolbox_scs.__all__, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1636: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:4: WARNING: duplicate object description of toolbox_scs.load, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:49: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:66: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:29: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:139: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:85: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:8: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:126: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:61: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:8: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:146: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:203: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:214: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:227: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/laser_utils/index.rst:28: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/laser_utils/index.rst:41: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/laser_utils/index.rst:55: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/XAS/index.rst:40: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/XAS/index.rst:7: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/XAS/index.rst:47: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/XAS/index.rst:63: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:135: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:211: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:282: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:8: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:302: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:413: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:9: WARNING: Block quote ends without a blank line; 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[ 1%] Analysis_of_Viking_spectrometer_data writing output... [ 3%] Azimuthal integration of DSSC with pyFAI writing output... [ 4%] BOZ analysis part I.a Correction determination writing output... [ 6%] BOZ analysis part I.b Correction validation writing output... [ 7%] BOZ analysis part II.1 Small data writing output... [ 9%] BOZ analysis part II.2 Binning writing output... [ 10%] DSSC create geometry writing output... [ 12%] DSSC fine delay with SCS toolbox writing output... [ 13%] DSSC scattering time-delay writing output... [ 15%] Dask DSSC module binning writing output... [ 16%] HRIXS writing output... [ 18%] How to extract peaks from digitizer traces writing output... [ 19%] Knife edge scan and fluence calculation writing output... [ 21%] Loading_data_in_memory writing output... [ 22%] OnlineGPU BOZ analysis part I.a Correction determination S K-egde writing output... [ 24%] PES_spectra_extraction writing output... [ 25%] Transient reflectivity measurement writing output... [ 27%] autoapi/index writing output... [ 28%] autoapi/toolbox_scs/base/index writing output... [ 30%] autoapi/toolbox_scs/base/knife_edge/index writing output... [ 31%] autoapi/toolbox_scs/base/tests/index writing output... [ 33%] autoapi/toolbox_scs/base/tests/test_knife_edge/index writing output... [ 34%] autoapi/toolbox_scs/constants/index writing output... [ 36%] autoapi/toolbox_scs/detectors/azimuthal_integrator/index writing output... [ 37%] autoapi/toolbox_scs/detectors/bam_detectors/index writing output... [ 39%] autoapi/toolbox_scs/detectors/digitizers/index writing output... [ 40%] autoapi/toolbox_scs/detectors/dssc/index writing output... [ 42%] autoapi/toolbox_scs/detectors/dssc_data/index writing output... [ 43%] autoapi/toolbox_scs/detectors/dssc_misc/index writing output... [ 45%] autoapi/toolbox_scs/detectors/dssc_plot/index writing output... [ 46%] autoapi/toolbox_scs/detectors/dssc_processing/index writing output... 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[ 71%] autoapi/toolbox_scs/routines/XAS/index writing output... [ 72%] autoapi/toolbox_scs/routines/boz/index writing output... [ 74%] autoapi/toolbox_scs/routines/index writing output... [ 75%] autoapi/toolbox_scs/routines/knife_edge/index writing output... [ 77%] autoapi/toolbox_scs/test/index writing output... [ 78%] autoapi/toolbox_scs/test/test_dssc_cls/index writing output... [ 80%] autoapi/toolbox_scs/test/test_hrixs/index writing output... [ 81%] autoapi/toolbox_scs/test/test_misc/index writing output... [ 83%] autoapi/toolbox_scs/test/test_top_level/index writing output... [ 84%] autoapi/toolbox_scs/test/test_utils/index writing output... [ 86%] autoapi/toolbox_scs/util/exceptions/index writing output... [ 87%] autoapi/toolbox_scs/util/index writing output... [ 89%] autoapi/toolbox_scs/util/pkg/index writing output... [ 90%] bunch_pattern_decoding writing output... [ 92%] changelog writing output... [ 93%] dssc/DSSCBinner writing output... [ 95%] howtos writing output... [ 96%] index writing output... [ 98%] load writing output... 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[100%] toolbox_scs.routines.boz [autosummary] generating autosummary for: Analysis_of_Viking_spectrometer_data.ipynb, Azimuthal integration of DSSC with pyFAI.ipynb, BOZ analysis part I.a Correction determination.ipynb, BOZ analysis part I.b Correction validation.ipynb, BOZ analysis part II.1 Small data.ipynb, BOZ analysis part II.2 Binning.ipynb, DSSC create geometry.ipynb, DSSC fine delay with SCS toolbox.ipynb, DSSC scattering time-delay.ipynb, Dask DSSC module binning.ipynb, ..., OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb, PES_spectra_extraction.ipynb, Transient reflectivity measurement.ipynb, bunch_pattern_decoding.rst, changelog.rst, dssc/DSSCBinner.rst, howtos.rst, index.rst, load.rst, maintainers.rst building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: [new config] 66 added, 0 changed, 0 removed reading sources... [ 1%] Analysis_of_Viking_spectrometer_data reading sources... [ 3%] Azimuthal integration of DSSC with pyFAI reading sources... [ 4%] BOZ analysis part I.a Correction determination reading sources... [ 6%] BOZ analysis part I.b Correction validation reading sources... [ 7%] BOZ analysis part II.1 Small data reading sources... [ 9%] BOZ analysis part II.2 Binning reading sources... [ 10%] DSSC create geometry reading sources... [ 12%] DSSC fine delay with SCS toolbox reading sources... [ 13%] DSSC scattering time-delay reading sources... [ 15%] Dask DSSC module binning reading sources... [ 16%] HRIXS reading sources... [ 18%] How to extract peaks from digitizer traces reading sources... [ 19%] Knife edge scan and fluence calculation reading sources... [ 21%] Loading_data_in_memory reading sources... [ 22%] OnlineGPU BOZ analysis part I.a Correction determination S K-egde reading sources... [ 24%] PES_spectra_extraction reading sources... [ 25%] Transient reflectivity measurement reading sources... [ 27%] autoapi/index reading sources... 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[ 72%] autoapi/toolbox_scs/routines/boz/index reading sources... [ 74%] autoapi/toolbox_scs/routines/index reading sources... [ 75%] autoapi/toolbox_scs/routines/knife_edge/index reading sources... [ 77%] autoapi/toolbox_scs/test/index reading sources... [ 78%] autoapi/toolbox_scs/test/test_dssc_cls/index reading sources... [ 80%] autoapi/toolbox_scs/test/test_hrixs/index reading sources... [ 81%] autoapi/toolbox_scs/test/test_misc/index reading sources... [ 83%] autoapi/toolbox_scs/test/test_top_level/index reading sources... [ 84%] autoapi/toolbox_scs/test/test_utils/index reading sources... [ 86%] autoapi/toolbox_scs/util/exceptions/index reading sources... [ 87%] autoapi/toolbox_scs/util/index reading sources... [ 89%] autoapi/toolbox_scs/util/pkg/index reading sources... [ 90%] bunch_pattern_decoding reading sources... [ 92%] changelog reading sources... [ 93%] dssc/DSSCBinner reading sources... [ 95%] howtos reading sources... [ 96%] index [AutoAPI] Adding AutoAPI TOCTree [autoapi/index] to index.rst reading sources... [ 98%] load reading sources... [100%] maintainers /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages/nbsphinx/__init__.py:1058: RuntimeWarning: You are using an unsupported version of pandoc (1.19.2.4). Your version must be at least (2.14.2) but less than (4.0.0). Refer to https://pandoc.org/installing.html. Continuing with doubts... nbconvert.utils.pandoc.check_pandoc_version() /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:3433: CRITICAL: Title level inconsistent: Peak fluence calculation using knife-edge scans: ------------------------------------------------ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:3451: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:3451: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:3506: CRITICAL: Title level inconsistent: Load scanning motor and laser photodiode data ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:3572: CRITICAL: Title level inconsistent: Check diode traces and region of integration for peak calculations ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:5807: CRITICAL: Title level inconsistent: Plot intensity vs. knife-edge positions, fit with erfc function ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:7990: CRITICAL: Title level inconsistent: OL power measurement ^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:8016: CRITICAL: Title level inconsistent: Fluence vs. laser power ^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:9096: CRITICAL: Title level inconsistent: Load runs with horizontal and vertical scans, normalize the transmitted signal by XGM ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:9676: CRITICAL: Title level inconsistent: Fit scan to erfc function and plot ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:11863: CRITICAL: Title level inconsistent: Load XGM data ^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:12357: CRITICAL: Title level inconsistent: Calibrate XGM fast data using photon flux and plot ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/base/knife_edge/index.rst:4: WARNING: duplicate object description of toolbox_scs.base.knife_edge, other instance in autoapi/toolbox_scs/base/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/dssc_misc/index.rst:71: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/dssc_misc/index.rst:30: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/fccd/index.rst:6: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:7: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/index.rst:642: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/index.rst:30: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/index.rst:7: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:717: ERROR: Unexpected indentation. 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/usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1716: WARNING: duplicate object description of toolbox_scs.__all__, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1727: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:8: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1812: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1869: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1880: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1893: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2007: WARNING: duplicate object description of toolbox_scs.__all__, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2018: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2025: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2041: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2120: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2196: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2267: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:8: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2287: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2398: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2421: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2470: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2526: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2541: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2544: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2547: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2566: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2687: WARNING: duplicate object description of toolbox_scs.__all__, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1636: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:4: WARNING: duplicate object description of toolbox_scs.load, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:49: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:66: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:29: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:139: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:85: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:8: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:126: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:61: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:8: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:146: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:203: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:214: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:227: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/laser_utils/index.rst:28: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/laser_utils/index.rst:41: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/laser_utils/index.rst:55: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/XAS/index.rst:40: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/XAS/index.rst:7: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/XAS/index.rst:47: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/XAS/index.rst:63: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:135: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:211: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:282: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:8: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:302: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:413: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:436: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:485: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:541: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:556: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:559: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:562: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:581: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:88: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:7: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:95: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:111: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:190: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:266: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:337: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:8: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:357: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:468: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:491: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:540: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:596: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:611: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:614: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:617: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:636: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/knife_edge/index.rst:4: WARNING: duplicate object description of toolbox_scs.routines.knife_edge, other instance in autoapi/toolbox_scs/routines/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_dssc_cls/index.rst:89: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_dssc_cls/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_hrixs/index.rst:47: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_hrixs/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_misc/index.rst:82: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_misc/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_top_level/index.rst:75: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_top_level/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_utils/index.rst:73: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_utils/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/index.rst:128: CRITICAL: Title level inconsistent: Contribute ~~~~~~~~~~ WARNING: nbsphinx_widgets_path not given and ipywidgets module unavailable looking for now-outdated files... none found pickling environment... done checking consistency... /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Analysis_of_Viking_spectrometer_data.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Azimuthal integration of DSSC with pyFAI.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.2 Binning.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC create geometry.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Dask DSSC module binning.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/HRIXS.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/How to extract peaks from digitizer traces.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Loading_data_in_memory.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/PES_spectra_extraction.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Transient reflectivity measurement.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/bunch_pattern_decoding.rst: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/dssc/DSSCBinner.rst: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/load.rst: WARNING: document isn't included in any toctree done processing SCSToolbox.tex... index howtos maintainers changelog autoapi/index autoapi/toolbox_scs/index autoapi/toolbox_scs/base/index autoapi/toolbox_scs/base/tests/index autoapi/toolbox_scs/base/tests/test_knife_edge/index autoapi/toolbox_scs/base/knife_edge/index autoapi/toolbox_scs/detectors/index autoapi/toolbox_scs/detectors/azimuthal_integrator/index autoapi/toolbox_scs/detectors/bam_detectors/index autoapi/toolbox_scs/detectors/digitizers/index autoapi/toolbox_scs/detectors/dssc/index autoapi/toolbox_scs/detectors/dssc_data/index autoapi/toolbox_scs/detectors/dssc_misc/index autoapi/toolbox_scs/detectors/dssc_plot/index autoapi/toolbox_scs/detectors/dssc_processing/index autoapi/toolbox_scs/detectors/fccd/index autoapi/toolbox_scs/detectors/hrixs/index autoapi/toolbox_scs/detectors/pes/index autoapi/toolbox_scs/detectors/viking/index autoapi/toolbox_scs/detectors/xgm/index autoapi/toolbox_scs/misc/index autoapi/toolbox_scs/misc/bunch_pattern/index autoapi/toolbox_scs/misc/bunch_pattern_external/index autoapi/toolbox_scs/misc/laser_utils/index autoapi/toolbox_scs/misc/undulator/index autoapi/toolbox_scs/routines/index autoapi/toolbox_scs/routines/Reflectivity/index autoapi/toolbox_scs/routines/XAS/index autoapi/toolbox_scs/routines/boz/index autoapi/toolbox_scs/routines/knife_edge/index autoapi/toolbox_scs/test/index autoapi/toolbox_scs/test/test_dssc_cls/index autoapi/toolbox_scs/test/test_hrixs/index autoapi/toolbox_scs/test/test_misc/index autoapi/toolbox_scs/test/test_top_level/index autoapi/toolbox_scs/test/test_utils/index autoapi/toolbox_scs/util/index autoapi/toolbox_scs/util/exceptions/index autoapi/toolbox_scs/util/pkg/index autoapi/toolbox_scs/constants/index autoapi/toolbox_scs/load/index autoapi/toolbox_scs/mnemonics_machinery/index resolving references... done writing... done copying images... [ 50%] metadata.png copying images... [100%] sview.png copying TeX support files... copying TeX support files... done build succeeded, 174 warnings. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). [rtd-command-info] start-time: 2024-06-05T22:39:47.956837Z, end-time: 2024-06-05T22:39:48.013939Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2024-06-05T22:39:48.100507Z, end-time: 2024-06-05T22:39:52.976381Z, duration: 4, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=scs-toolbox -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. 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LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}{ /usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on scs-toolbox.pdf (169 pages, 694178 bytes). Transcript written on scs-toolbox.log. Latexmk: Index file 'scs-toolbox.idx' was written Latexmk: Missing input file: 'scs-toolbox.ind' from line 'No file scs-toolbox.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'scs-toolbox.pdf' Latexmk: List of undefined refs and citations: Reference `autoapi/toolbox_scs/base/index:module-toolbox_scs.base' on page 165 undefined on input line 21974 Reference `autoapi/toolbox_scs/base/knife_edge/index:module-toolbox_scs.base.knife_edge' on page 165 undefined on input line 21975 Reference `autoapi/toolbox_scs/base/tests/index:module-toolbox_scs.base.tests' on page 165 undefined on input line 21976 Reference `autoapi/toolbox_scs/base/tests/test_knife_edge/index:module-toolbox_scs.base.tests.test_knife_edge' on page 165 undefined on input line 21977 Reference `autoapi/toolbox_scs/constants/index:module-toolbox_scs.constants' on page 165 undefined on input line 21978 Reference `autoapi/toolbox_scs/detectors/azimuthal_integrator/index:module-toolbox_scs.detectors.azimuthal_integrator' on page 165 undefined on input line 21980 Reference `autoapi/toolbox_scs/detectors/bam_detectors/index:module-toolbox_scs.detectors.bam_detectors' on 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21988 Reference `autoapi/toolbox_scs/detectors/hrixs/index:module-toolbox_scs.detectors.hrixs' on page 165 undefined on input line 21989 Reference `autoapi/toolbox_scs/detectors/index:module-toolbox_scs.detectors' on page 165 undefined on input line 21979 Reference `autoapi/toolbox_scs/detectors/pes/index:module-toolbox_scs.detectors.pes' on page 165 undefined on input line 21990 Reference `autoapi/toolbox_scs/detectors/viking/index:module-toolbox_scs.detectors.viking' on page 165 undefined on input line 21991 Reference `autoapi/toolbox_scs/detectors/xgm/index:module-toolbox_scs.detectors.xgm' on page 165 undefined on input line 21992 Reference `autoapi/toolbox_scs/index:module-toolbox_scs' on page 165 undefined on input line 21973 Reference `autoapi/toolbox_scs/load/index:module-toolbox_scs.load' on page 165 undefined on input line 21993 Reference `autoapi/toolbox_scs/misc/bunch_pattern/index:module-toolbox_scs.misc.bunch_pattern' on page 165 undefined on input line 21995 Reference 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get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, [122] Underfull \hbox (badness 10000) in paragraph at lines 16311--16313 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, Underfull \hbox (badness 10000) in paragraph at lines 16381--16383 []|[][]\T1/txtt/m/sl/10 inspect_histogram[][]\T1/qtm/m/n/10 (arr[, arr_dark, ma sk, ex- Underfull \hbox (badness 10000) in paragraph at lines 16409--16411 []|[][]\T1/txtt/m/sl/10 compute_flat_field_correction[][]\T1/qtm/m/n/10 (rois, params[, Underfull \hbox (badness 7362) in paragraph at lines 16549--16551 []|[][]\T1/txtt/m/sl/10 process[][]\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, mask, [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] Underfull \hbox (badness 5970) in paragraph at lines 19639--19642 []\T1/txtt/bx/n/10 extract_bam \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 bool\T1/qtm/m/n /10 ) ^^U If True, ex-tracts the val-ues from BAM vari-ables (e.g. [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] Underfull \hbox (badness 10000) in paragraph at lines 21980--21981 []\T1/txtt/m/n/10 toolbox_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 , [165] (./scs-toolbox.ind [166] Overfull \hbox (82.43233pt too wide) in paragraph at lines 18--20 []\T1/txtt/m/n/10 __call__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/txtt/m/n/10 __del__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/txtt/m/n/10 __del__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 27--29 []\T1/txtt/m/n/10 __str__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.boz.parameters Underfull \hbox (badness 5519) in paragraph at lines 29--30 []\T1/txtt/m/n/10 __str__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 31--33 []\T1/txtt/m/n/10 _bin_metadata() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. detectors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 33--35 []\T1/txtt/m/n/10 _bin_metadata() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 33--35 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 37--39 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 37--39 \T1/qtm/m/it/10 box_scs.AzimuthalIntegratorDSSC method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 39--41 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 39--41 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 41--43 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 41--43 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegratorDSSC Underfull \hbox (badness 10000) in paragraph at lines 43--45 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (49.47249pt too wide) in paragraph at lines 43--45 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 45--47 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (73.36249pt too wide) in paragraph at lines 45--47 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegratorDSSC Underfull \hbox (badness 10000) in paragraph at lines 47--49 []\T1/txtt/m/n/10 _calc_indices() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 49--51 []\T1/txtt/m/n/10 _calc_indices() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 49--51 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 51--53 []\T1/txtt/m/n/10 _calc_indices() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (49.47249pt too wide) in paragraph at lines 51--53 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 55--57 []\T1/txtt/m/n/10 _calc_polar_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 55--57 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 57--59 []\T1/txtt/m/n/10 _calc_polar_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (49.47249pt too wide) in paragraph at lines 57--59 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 62--64 []\T1/txtt/m/n/10 _centroid_ed_map() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 62--64 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 65--67 []\T1/txtt/m/n/10 _centroid_map() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. detectors.MaranaX Underfull \hbox (badness 10000) in paragraph at lines 67--69 []\T1/txtt/m/n/10 _centroid_map() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 67--69 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 69--70 []\T1/txtt/m/n/10 _centroid_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 70--72 []\T1/txtt/m/n/10 _centroid_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .detectors.MaranaX Underfull \hbox (badness 10000) in paragraph at lines 72--74 []\T1/txtt/m/n/10 _centroid_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 72--74 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), [167] Underfull \hbox (badness 10000) in paragraph at lines 77--79 []\T1/txtt/m/n/10 _centroid_tb_map() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 77--79 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 5189) in paragraph at lines 79--80 []\T1/txtt/m/n/10 _histogram_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_sc s.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 80--82 []\T1/txtt/m/n/10 _histogram_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_sc s.detectors.MaranaX Underfull \hbox (badness 10000) in paragraph at lines 82--84 []\T1/txtt/m/n/10 _histogram_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 82--84 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 84--86 []\T1/txtt/m/n/10 _mnemo_to_prop() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .MaranaX static Underfull \hbox (badness 10000) in paragraph at lines 86--88 []\T1/txtt/m/n/10 _mnemo_to_prop() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .detectors.MaranaX Underfull \hbox (badness 10000) in paragraph at lines 88--90 []\T1/txtt/m/n/10 _mnemo_to_prop() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 88--90 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX static Underfull \hbox (badness 10000) in paragraph at lines 92--94 []\T1/txtt/m/n/10 _with_values() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule too l- Underfull \hbox (badness 10000) in paragraph at lines 97--99 []\T1/txtt/m/n/10 add_attributes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 97--99 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 99--101 []\T1/txtt/m/n/10 add_attributes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 99--101 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 101--102 []\T1/txtt/m/n/10 add_attributes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 104--105 []\T1/txtt/m/n/10 add_binner() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 106--108 []\T1/txtt/m/n/10 add_dataArray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 106--108 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 108--110 []\T1/txtt/m/n/10 add_dataArray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 108--110 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 110--111 []\T1/txtt/m/n/10 add_dataArray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 112--113 []\T1/txtt/m/n/10 aggregate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 115--117 []\T1/txtt/m/n/10 aggregate_ds() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.hrixs.hRIXS Underfull \hbox (badness 5475) in paragraph at lines 118--119 []\T1/txtt/m/n/10 aggregator() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 119--120 []\T1/txtt/m/n/10 aggregator() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/txtt/m/n/10 aggregators \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS at- Underfull \hbox (badness 10000) in paragraph at lines 127--129 []\T1/txtt/m/n/10 align_ol_to_fel_pId() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 131--132 []\T1/txtt/m/n/10 average_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 136--138 []\T1/txtt/m/n/10 AzimuthalIntegrator \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in tool- Underfull \hbox (badness 10000) in paragraph at lines 136--138 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 139--141 []\T1/txtt/m/n/10 AzimuthalIntegratorDSSC \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in tool- Underfull \hbox (badness 10000) in paragraph at lines 141--143 []\T1/txtt/m/n/10 AzimuthalIntegratorDSSC \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in tool- Underfull \hbox (badness 10000) in paragraph at lines 141--143 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 149--150 []\T1/txtt/m/n/10 binning() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.fccd.FastCCD Underfull \hbox (badness 5985) in paragraph at lines 153--154 []\T1/txtt/m/n/10 BL_POLY_DEG \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.Viking at-tribute\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 154--156 []\T1/txtt/m/n/10 BL_POLY_DEG \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 157--159 []\T1/txtt/m/n/10 BL_SIGNAL_RANGE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. detectors.Viking at- [168] Underfull \hbox (badness 10000) in paragraph at lines 165--166 []\T1/txtt/m/n/10 calc_q() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.Azimuth alIntegrator method\T1/qtm/m/n/10 ), Overfull \hbox (71.93236pt too wide) in paragraph at lines 166--168 []\T1/txtt/m/n/10 calc_q() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detecto rs.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 168--170 []\T1/txtt/m/n/10 calc_q() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detecto rs.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 171--173 []\T1/txtt/m/n/10 calibrate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 176--177 []\T1/txtt/m/n/10 calibrate_xgm() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Underfull \hbox (badness 10000) in paragraph at lines 178--179 []\T1/txtt/m/n/10 centroid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 179--180 []\T1/txtt/m/n/10 centroid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.hrixs.MaranaX Underfull \hbox (badness 10000) in paragraph at lines 183--185 []\T1/txtt/m/n/10 centroid_from_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 183--185 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 185--187 []\T1/txtt/m/n/10 centroid_from_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 189--191 []\T1/txtt/m/n/10 centroid_one() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 193--195 []\T1/txtt/m/n/10 centroid_two() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 199--200 []\T1/txtt/m/n/10 check_peak_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 200--202 []\T1/txtt/m/n/10 check_peak_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 202--204 []\T1/txtt/m/n/10 cleanup_tmp_dir() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 204--206 []\T1/txtt/m/n/10 collect_fastccd_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 204--206 \T1/qtm/m/it/10 box_scs.detectors.fccd.FastCCD method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 206--208 []\T1/txtt/m/n/10 combine_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 206--208 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 208--210 []\T1/txtt/m/n/10 combine_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 208--210 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 210--211 []\T1/txtt/m/n/10 combine_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 220--221 []\T1/txtt/m/n/10 create_dssc_bins() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 221--223 []\T1/txtt/m/n/10 create_dssc_bins() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 223--225 []\T1/txtt/m/n/10 create_pulsemask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 223--225 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 225--227 []\T1/txtt/m/n/10 create_pulsemask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 225--227 \T1/qtm/m/it/10 box_scs.detectors.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 227--228 []\T1/txtt/m/n/10 create_pulsemask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_s cs.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 233--235 []\T1/txtt/m/n/10 dask_load_persistently() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool - Underfull \hbox (badness 10000) in paragraph at lines 233--235 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 235--237 []\T1/txtt/m/n/10 dask_load_persistently() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool - Underfull \hbox (badness 10000) in paragraph at lines 241--243 []\T1/txtt/m/n/10 define_scan() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.de tectors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 245--247 []\T1/txtt/m/n/10 degToRelPower() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Underfull \hbox (badness 10000) in paragraph at lines 249--251 []\T1/txtt/m/n/10 delayToPosition() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- [169] Underfull \hbox (badness 10000) in paragraph at lines 254--256 []\T1/txtt/m/n/10 DETECTOR_FIELDS \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. detectors.hRIXS at- Underfull \hbox (badness 10000) in paragraph at lines 256--258 []\T1/txtt/m/n/10 DETECTOR_FIELDS \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. detectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 275--277 []\T1/txtt/m/n/10 e_per_counts() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 284--286 []\T1/txtt/m/n/10 extractBunchPattern() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 292--293 []\T1/txtt/m/n/10 ff_refine_crit() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 302--303 []\T1/txtt/m/n/10 find_curvature() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .detectors.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 310--312 []\T1/txtt/m/n/10 find_rois_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 312--314 []\T1/txtt/m/n/10 find_rois_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 316--317 []\T1/txtt/m/n/10 flat_field_guess() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_s cs.parameters Underfull \hbox (badness 10000) in paragraph at lines 317--319 []\T1/txtt/m/n/10 flat_field_guess() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 317--319 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 323--325 []\T1/txtt/m/n/10 fluenceCalibration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 326--327 []\T1/txtt/m/n/10 from_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 328--330 []\T1/txtt/m/n/10 from_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 339--341 []\T1/txtt/m/n/10 get_bam() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 343--345 []\T1/txtt/m/n/10 get_bam_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 345--347 []\T1/txtt/m/n/10 get_camera_gain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_sc s.detectors.Viking [170] Underfull \hbox (badness 10000) in paragraph at lines 347--349 []\T1/txtt/m/n/10 get_camera_gain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 347--349 \T1/qtm/m/it/10 box_scs.detectors.viking.Viking method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 350--352 []\T1/txtt/m/n/10 get_camera_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_ scs.detectors.Viking Underfull \hbox (badness 10000) in paragraph at lines 352--354 []\T1/txtt/m/n/10 get_camera_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 352--354 \T1/qtm/m/it/10 box_scs.detectors.viking.Viking method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 354--355 []\T1/txtt/m/n/10 get_camera_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_ scs.Viking method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 356--358 []\T1/txtt/m/n/10 get_data_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 358--360 []\T1/txtt/m/n/10 get_data_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 361--363 []\T1/txtt/m/n/10 get_dig_avg_trace() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 363--365 []\T1/txtt/m/n/10 get_dig_avg_trace() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 366--368 []\T1/txtt/m/n/10 get_digitizer_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 368--370 []\T1/txtt/m/n/10 get_digitizer_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 371--373 []\T1/txtt/m/n/10 get_flat_field() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 371--373 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 373--375 []\T1/txtt/m/n/10 get_flat_field() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .routines.parameters Underfull \hbox (badness 10000) in paragraph at lines 376--377 []\T1/txtt/m/n/10 get_Fnl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.boz.parameters Underfull \hbox (badness 5519) in paragraph at lines 377--378 []\T1/txtt/m/n/10 get_Fnl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 378--380 []\T1/txtt/m/n/10 get_info() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 380--381 []\T1/txtt/m/n/10 get_info() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 384--386 []\T1/txtt/m/n/10 get_laser_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 387--389 []\T1/txtt/m/n/10 get_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routi nes.boz.parameters Underfull \hbox (badness 6220) in paragraph at lines 391--393 []\T1/txtt/m/n/10 get_mask_idx() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.r outines.boz.parameters Underfull \hbox (badness 10000) in paragraph at lines 393--395 []\T1/txtt/m/n/10 get_mask_idx() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.r outines.parameters Underfull \hbox (badness 5475) in paragraph at lines 395--396 []\T1/txtt/m/n/10 get_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 396--398 []\T1/txtt/m/n/10 get_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 399--401 []\T1/txtt/m/n/10 get_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 405--407 []\T1/txtt/m/n/10 get_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 409--411 []\T1/txtt/m/n/10 get_pes_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 415--416 []\T1/txtt/m/n/10 get_roi_pixel_pos() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 416--418 []\T1/txtt/m/n/10 get_roi_pixel_pos() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 420--422 []\T1/txtt/m/n/10 get_sase_pId() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule too l- Underfull \hbox (badness 10000) in paragraph at lines 422--424 []\T1/txtt/m/n/10 get_tim_binned() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 422--424 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 429--431 []\T1/txtt/m/n/10 get_tim_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Underfull \hbox (badness 10000) in paragraph at lines 432--433 []\T1/txtt/m/n/10 get_undulator_config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- Underfull \hbox (badness 10000) in paragraph at lines 433--435 []\T1/txtt/m/n/10 get_undulator_config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- [171] Underfull \hbox (badness 10000) in paragraph at lines 439--441 []\T1/txtt/m/n/10 get_xgm_binned() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 439--441 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 445--446 []\T1/txtt/m/n/10 get_xgm_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 446--448 []\T1/txtt/m/n/10 get_xgm_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 453--455 []\T1/txtt/m/n/10 histogram_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 462--463 []\T1/txtt/m/n/10 inspect_correction() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 463--465 []\T1/txtt/m/n/10 inspect_correction() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 466--468 []\T1/txtt/m/n/10 inspect_correction_sk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 468--470 []\T1/txtt/m/n/10 inspect_correction_sk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 473--474 []\T1/txtt/m/n/10 inspect_flat_field_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 474--476 []\T1/txtt/m/n/10 inspect_flat_field_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 476--478 []\T1/txtt/m/n/10 inspect_flat_field_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 482--483 []\T1/txtt/m/n/10 inspect_histogram() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 483--485 []\T1/txtt/m/n/10 inspect_histogram() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 487--488 []\T1/txtt/m/n/10 inspect_nl_fit() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 489--491 []\T1/txtt/m/n/10 inspect_plane_fitting() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 491--493 []\T1/txtt/m/n/10 inspect_plane_fitting() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 497--498 []\T1/txtt/m/n/10 inspect_saturation() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 498--500 []\T1/txtt/m/n/10 inspect_saturation() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 501--502 []\T1/txtt/m/n/10 integrate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 503--505 []\T1/txtt/m/n/10 integrate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 509--511 []\T1/txtt/m/n/10 is_ppl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 513--515 []\T1/txtt/m/n/10 is_pulse_at() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 517--519 []\T1/txtt/m/n/10 is_sase_1() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 521--523 []\T1/txtt/m/n/10 is_sase_3() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- [172] Underfull \hbox (badness 10000) in paragraph at lines 530--532 []\T1/txtt/m/n/10 knife_edge() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 533--535 []\T1/txtt/m/n/10 knife_edge_base() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 538--540 []\T1/txtt/m/n/10 list_suites() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 541--543 []\T1/txtt/m/n/10 list_suites() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 548--550 []\T1/txtt/m/n/10 load() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routines. boz.parameters class Underfull \hbox (badness 10000) in paragraph at lines 551--553 []\T1/txtt/m/n/10 load_binned() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.de tectors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 554--555 []\T1/txtt/m/n/10 load_dark() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 556--558 []\T1/txtt/m/n/10 load_dark() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 562--564 []\T1/txtt/m/n/10 load_dssc_info() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 566--568 []\T1/txtt/m/n/10 load_dssc_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 568--570 []\T1/txtt/m/n/10 load_gain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 572--574 []\T1/txtt/m/n/10 load_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 574--576 []\T1/txtt/m/n/10 load_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 578--580 []\T1/txtt/m/n/10 load_tim() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 580--581 []\T1/txtt/m/n/10 load_tim() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 584--586 []\T1/txtt/m/n/10 load_xarray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 586--588 []\T1/txtt/m/n/10 load_xgm() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 588--589 []\T1/txtt/m/n/10 load_xgm() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 605--607 []\T1/txtt/m/n/10 mnemonics_for_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 612--613 []| \T1/txtt/m/n/10 toolbox_scs.base.tests.test_knife_edge\T1/qtm/m/n/10 , Overfull \hbox (13.12186pt too wide) in paragraph at lines 615--616 []| \T1/txtt/m/n/10 toolbox_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 , [173] Underfull \hbox (badness 10000) in paragraph at lines 631--632 []| \T1/txtt/m/n/10 toolbox_scs.misc.bunch_pattern_external\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 668--669 []\T1/txtt/m/n/10 normalize() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 672--674 []\T1/txtt/m/n/10 npulses_has_changed() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 676--678 []\T1/txtt/m/n/10 NUM_MAX_HITS \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.MaranaX at- Underfull \hbox (badness 10000) in paragraph at lines 684--685 []\T1/txtt/m/n/10 open_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 689--690 []\T1/txtt/m/n/10 parabola() \T1/qtm/m/n/10 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}{ /usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on scs-toolbox.pdf (182 pages, 776898 bytes). Transcript written on scs-toolbox.log. Latexmk: Index file 'scs-toolbox.idx' was written Latexmk: References changed. Latexmk: Log file says output to 'scs-toolbox.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'scs-toolbox.aux' 'scs-toolbox.out' 'scs-toolbox.toc' ------------ Run number 3 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="scs-toolbox" "SCSToolbox.tex"' ------------ Latexmk: applying rule 'pdflatex'... 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(/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [1] [2] Chapter 2. [3 <./metadata.png>] [4] Chapter 3. 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AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 49--51 []\T1/txtt/m/n/10 _calc_indices() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 49--51 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 51--53 []\T1/txtt/m/n/10 _calc_indices() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (49.47249pt too wide) in paragraph at lines 51--53 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 55--57 []\T1/txtt/m/n/10 _calc_polar_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 55--57 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 57--59 []\T1/txtt/m/n/10 _calc_polar_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (49.47249pt too wide) in paragraph at lines 57--59 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 62--64 []\T1/txtt/m/n/10 _centroid_ed_map() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 62--64 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 65--67 []\T1/txtt/m/n/10 _centroid_map() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. detectors.MaranaX Underfull \hbox (badness 10000) in paragraph at lines 67--69 []\T1/txtt/m/n/10 _centroid_map() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 67--69 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 69--70 []\T1/txtt/m/n/10 _centroid_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 70--72 []\T1/txtt/m/n/10 _centroid_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .detectors.MaranaX Underfull \hbox (badness 10000) in paragraph at lines 72--74 []\T1/txtt/m/n/10 _centroid_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 72--74 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), [167] Underfull \hbox (badness 10000) in paragraph at lines 77--79 []\T1/txtt/m/n/10 _centroid_tb_map() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 77--79 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 5189) in paragraph at lines 79--80 []\T1/txtt/m/n/10 _histogram_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_sc s.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 80--82 []\T1/txtt/m/n/10 _histogram_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_sc s.detectors.MaranaX Underfull \hbox (badness 10000) in paragraph at lines 82--84 []\T1/txtt/m/n/10 _histogram_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 82--84 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 84--86 []\T1/txtt/m/n/10 _mnemo_to_prop() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .MaranaX static Underfull \hbox (badness 10000) in paragraph at lines 86--88 []\T1/txtt/m/n/10 _mnemo_to_prop() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .detectors.MaranaX Underfull \hbox (badness 10000) in paragraph at lines 88--90 []\T1/txtt/m/n/10 _mnemo_to_prop() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 88--90 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX static Underfull \hbox (badness 10000) in paragraph at lines 92--94 []\T1/txtt/m/n/10 _with_values() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule too l- Underfull \hbox (badness 10000) in paragraph at lines 97--99 []\T1/txtt/m/n/10 add_attributes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 97--99 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 99--101 []\T1/txtt/m/n/10 add_attributes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 99--101 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 101--102 []\T1/txtt/m/n/10 add_attributes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 104--105 []\T1/txtt/m/n/10 add_binner() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 106--108 []\T1/txtt/m/n/10 add_dataArray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 106--108 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 108--110 []\T1/txtt/m/n/10 add_dataArray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 108--110 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 110--111 []\T1/txtt/m/n/10 add_dataArray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 112--113 []\T1/txtt/m/n/10 aggregate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 115--117 []\T1/txtt/m/n/10 aggregate_ds() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.hrixs.hRIXS Underfull \hbox (badness 5475) in paragraph at lines 118--119 []\T1/txtt/m/n/10 aggregator() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 119--120 []\T1/txtt/m/n/10 aggregator() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/txtt/m/n/10 aggregators \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS at- Underfull \hbox (badness 10000) in paragraph at lines 127--129 []\T1/txtt/m/n/10 align_ol_to_fel_pId() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 131--132 []\T1/txtt/m/n/10 average_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 136--138 []\T1/txtt/m/n/10 AzimuthalIntegrator \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in tool- Underfull \hbox (badness 10000) in paragraph at lines 136--138 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 139--141 []\T1/txtt/m/n/10 AzimuthalIntegratorDSSC \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in tool- Underfull \hbox (badness 10000) in paragraph at lines 141--143 []\T1/txtt/m/n/10 AzimuthalIntegratorDSSC \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in tool- Underfull \hbox (badness 10000) in paragraph at lines 141--143 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 149--150 []\T1/txtt/m/n/10 binning() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.fccd.FastCCD Underfull \hbox (badness 5985) in paragraph at lines 153--154 []\T1/txtt/m/n/10 BL_POLY_DEG \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.Viking at-tribute\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 154--156 []\T1/txtt/m/n/10 BL_POLY_DEG \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 157--159 []\T1/txtt/m/n/10 BL_SIGNAL_RANGE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. detectors.Viking at- [168] Underfull \hbox (badness 10000) in paragraph at lines 165--166 []\T1/txtt/m/n/10 calc_q() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.Azimuth alIntegrator method\T1/qtm/m/n/10 ), Overfull \hbox (71.93236pt too wide) in paragraph at lines 166--168 []\T1/txtt/m/n/10 calc_q() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detecto rs.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 168--170 []\T1/txtt/m/n/10 calc_q() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detecto rs.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 171--173 []\T1/txtt/m/n/10 calibrate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 176--177 []\T1/txtt/m/n/10 calibrate_xgm() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Underfull \hbox (badness 10000) in paragraph at lines 178--179 []\T1/txtt/m/n/10 centroid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 179--180 []\T1/txtt/m/n/10 centroid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.hrixs.MaranaX Underfull \hbox (badness 10000) in paragraph at lines 183--185 []\T1/txtt/m/n/10 centroid_from_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 183--185 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 185--187 []\T1/txtt/m/n/10 centroid_from_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 189--191 []\T1/txtt/m/n/10 centroid_one() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 193--195 []\T1/txtt/m/n/10 centroid_two() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 199--200 []\T1/txtt/m/n/10 check_peak_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 200--202 []\T1/txtt/m/n/10 check_peak_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 202--204 []\T1/txtt/m/n/10 cleanup_tmp_dir() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 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cs.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 233--235 []\T1/txtt/m/n/10 dask_load_persistently() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool - Underfull \hbox (badness 10000) in paragraph at lines 233--235 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 235--237 []\T1/txtt/m/n/10 dask_load_persistently() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool - Underfull \hbox (badness 10000) in paragraph at lines 241--243 []\T1/txtt/m/n/10 define_scan() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.de tectors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 245--247 []\T1/txtt/m/n/10 degToRelPower() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Underfull \hbox (badness 10000) in paragraph at lines 249--251 []\T1/txtt/m/n/10 delayToPosition() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- [169] Underfull \hbox (badness 10000) in paragraph at lines 254--256 []\T1/txtt/m/n/10 DETECTOR_FIELDS 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\T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 339--341 []\T1/txtt/m/n/10 get_bam() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 343--345 []\T1/txtt/m/n/10 get_bam_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 345--347 []\T1/txtt/m/n/10 get_camera_gain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_sc s.detectors.Viking [170] Underfull \hbox (badness 10000) in paragraph at lines 347--349 []\T1/txtt/m/n/10 get_camera_gain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 347--349 \T1/qtm/m/it/10 box_scs.detectors.viking.Viking method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 350--352 []\T1/txtt/m/n/10 get_camera_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_ scs.detectors.Viking Underfull \hbox (badness 10000) in 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(\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 366--368 []\T1/txtt/m/n/10 get_digitizer_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 368--370 []\T1/txtt/m/n/10 get_digitizer_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 371--373 []\T1/txtt/m/n/10 get_flat_field() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 371--373 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 373--375 []\T1/txtt/m/n/10 get_flat_field() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .routines.parameters Underfull \hbox (badness 10000) in paragraph at lines 376--377 []\T1/txtt/m/n/10 get_Fnl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.boz.parameters Underfull \hbox (badness 5519) in paragraph at lines 377--378 []\T1/txtt/m/n/10 get_Fnl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 378--380 []\T1/txtt/m/n/10 get_info() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 380--381 []\T1/txtt/m/n/10 get_info() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 384--386 []\T1/txtt/m/n/10 get_laser_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 387--389 []\T1/txtt/m/n/10 get_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routi nes.boz.parameters Underfull \hbox (badness 6220) in paragraph at lines 391--393 []\T1/txtt/m/n/10 get_mask_idx() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.r outines.boz.parameters Underfull \hbox (badness 10000) in paragraph at lines 393--395 []\T1/txtt/m/n/10 get_mask_idx() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.r outines.parameters Underfull \hbox (badness 5475) in paragraph at lines 395--396 []\T1/txtt/m/n/10 get_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 396--398 []\T1/txtt/m/n/10 get_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 399--401 []\T1/txtt/m/n/10 get_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 405--407 []\T1/txtt/m/n/10 get_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 409--411 []\T1/txtt/m/n/10 get_pes_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 415--416 []\T1/txtt/m/n/10 get_roi_pixel_pos() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 416--418 []\T1/txtt/m/n/10 get_roi_pixel_pos() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 420--422 []\T1/txtt/m/n/10 get_sase_pId() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule too l- Underfull \hbox (badness 10000) in paragraph at lines 422--424 []\T1/txtt/m/n/10 get_tim_binned() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 422--424 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 429--431 []\T1/txtt/m/n/10 get_tim_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Underfull \hbox (badness 10000) in paragraph at lines 432--433 []\T1/txtt/m/n/10 get_undulator_config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- Underfull \hbox (badness 10000) in paragraph at lines 433--435 []\T1/txtt/m/n/10 get_undulator_config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- [171] Underfull \hbox (badness 10000) in paragraph at lines 439--441 []\T1/txtt/m/n/10 get_xgm_binned() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 439--441 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 445--446 []\T1/txtt/m/n/10 get_xgm_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 446--448 []\T1/txtt/m/n/10 get_xgm_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 453--455 []\T1/txtt/m/n/10 histogram_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 462--463 []\T1/txtt/m/n/10 inspect_correction() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 463--465 []\T1/txtt/m/n/10 inspect_correction() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 466--468 []\T1/txtt/m/n/10 inspect_correction_sk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 468--470 []\T1/txtt/m/n/10 inspect_correction_sk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 473--474 []\T1/txtt/m/n/10 inspect_flat_field_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 474--476 []\T1/txtt/m/n/10 inspect_flat_field_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 476--478 []\T1/txtt/m/n/10 inspect_flat_field_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 482--483 []\T1/txtt/m/n/10 inspect_histogram() 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paragraph at lines 501--502 []\T1/txtt/m/n/10 integrate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 503--505 []\T1/txtt/m/n/10 integrate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 509--511 []\T1/txtt/m/n/10 is_ppl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 513--515 []\T1/txtt/m/n/10 is_pulse_at() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 517--519 []\T1/txtt/m/n/10 is_sase_1() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 521--523 []\T1/txtt/m/n/10 is_sase_3() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- [172] Underfull \hbox (badness 10000) in paragraph at lines 530--532 []\T1/txtt/m/n/10 knife_edge() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule 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[]\T1/txtt/m/n/10 load_dark() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 562--564 []\T1/txtt/m/n/10 load_dssc_info() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 566--568 []\T1/txtt/m/n/10 load_dssc_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 568--570 []\T1/txtt/m/n/10 load_gain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 572--574 []\T1/txtt/m/n/10 load_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 574--576 []\T1/txtt/m/n/10 load_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 578--580 []\T1/txtt/m/n/10 load_tim() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 580--581 []\T1/txtt/m/n/10 load_tim() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 584--586 []\T1/txtt/m/n/10 load_xarray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 586--588 []\T1/txtt/m/n/10 load_xgm() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 588--589 []\T1/txtt/m/n/10 load_xgm() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 605--607 []\T1/txtt/m/n/10 mnemonics_for_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 612--613 []| \T1/txtt/m/n/10 toolbox_scs.base.tests.test_knife_edge\T1/qtm/m/n/10 , Overfull \hbox (13.12186pt too wide) in paragraph at lines 615--616 []| \T1/txtt/m/n/10 toolbox_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 , [173] Underfull \hbox (badness 10000) in paragraph at lines 631--632 []| \T1/txtt/m/n/10 toolbox_scs.misc.bunch_pattern_external\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 668--669 []\T1/txtt/m/n/10 normalize() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 672--674 []\T1/txtt/m/n/10 npulses_has_changed() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 676--678 []\T1/txtt/m/n/10 NUM_MAX_HITS \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.MaranaX at- Underfull \hbox (badness 10000) in paragraph at lines 684--685 []\T1/txtt/m/n/10 open_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 689--690 []\T1/txtt/m/n/10 parabola() \T1/qtm/m/n/10 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plot_binner() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 712--714 []\T1/txtt/m/n/10 plot_binner_hist() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 714--716 []\T1/txtt/m/n/10 plot_FastCCD() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 716--718 []\T1/txtt/m/n/10 plot_hist_processed() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 718--720 []\T1/txtt/m/n/10 plot_scan() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 722--724 []\T1/txtt/m/n/10 plot_xgm_threshold() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 726--728 []\T1/txtt/m/n/10 positionToDelay() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- [174] 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10000) in paragraph at lines 900--902 []\T1/txtt/m/n/10 test_openrun() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 900--902 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 902--904 []\T1/txtt/m/n/10 test_openrunpath() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 902--904 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 904--906 []\T1/txtt/m/n/10 test_prepare_arrays_nans() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 906--908 []\T1/txtt/m/n/10 test_prepare_arrays_range() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 908--910 []\T1/txtt/m/n/10 test_prepare_arrays_size() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 910--912 []\T1/txtt/m/n/10 test_processing_quick() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 910--912 \T1/qtm/m/it/10 box_scs.test.test_dssc_cls.TestDSSC method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 912--914 []\T1/txtt/m/n/10 test_pulsePatternInfo() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- [176] Underfull \hbox (badness 10000) in paragraph at lines 914--916 []\T1/txtt/m/n/10 test_range_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 916--918 []\T1/txtt/m/n/10 test_rundir1() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 918--920 []\T1/txtt/m/n/10 test_rundir2() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 920--922 []\T1/txtt/m/n/10 test_rundir3() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 922--924 []\T1/txtt/m/n/10 test_use_xgm_tim() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 922--924 \T1/qtm/m/it/10 box_scs.test.test_dssc_cls.TestDSSC method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 931--932 []\T1/txtt/m/n/10 THRESHOLD \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.hrixs.hRIXS at- [177] Underfull \hbox (badness 10000) in paragraph at lines 1031--1032 []\T1/txtt/m/n/10 use_gpu() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.boz.parameters Underfull \hbox (badness 5519) in paragraph at lines 1032--1033 []\T1/txtt/m/n/10 use_gpu() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 1058--1060 []\T1/txtt/m/n/10 xgm_filter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.fccd.FastCCD [178]) (./scs-toolbox.aux) ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}{ /usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on scs-toolbox.pdf (182 pages, 776827 bytes). Transcript written on scs-toolbox.log. Latexmk: Index file 'scs-toolbox.idx' was written Latexmk: Log file says output to 'scs-toolbox.pdf' Latexmk: All targets (scs-toolbox.pdf) are up-to-date [rtd-command-info] start-time: 2024-06-05T22:39:53.090845Z, end-time: 2024-06-05T22:39:53.148464Z, duration: 0, exit-code: 0 mv -f /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/_build/latex/scs-toolbox.pdf /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/artifacts/latest/sphinx_pdf/scs-toolbox.pdf