Read the Docs build information Build id: 28528 Project: scs-toolbox Version: latest Commit: 352f6fe8bc21f57188295653932904c63a419fff Date: 2024-07-15T08:33:02.859703Z State: finished Success: True [rtd-command-info] start-time: 2024-07-15T08:33:04.025489Z, end-time: 2024-07-15T08:33:05.618126Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://git.xfel.eu/SCS/ToolBox.git . Cloning into '.'... [rtd-command-info] start-time: 2024-07-15T08:33:06.261105Z, end-time: 2024-07-15T08:33:06.402259Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 352f6fe feat(hRIXS): make centroid threshold configurable [rtd-command-info] start-time: 2024-07-15T08:33:06.486558Z, end-time: 2024-07-15T08:33:06.545870Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2024-07-15T08:33:07.854241Z, end-time: 2024-07-15T08:33:12.424104Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/bin/python3.7 Also creating executable in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2024-07-15T08:33:12.514735Z, end-time: 2024-07-15T08:33:13.426692Z, duration: 0, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/bin/python -m pip install --upgrade --no-cache-dir pip Requirement already satisfied: pip in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (24.0) [rtd-command-info] start-time: 2024-07-15T08:33:13.511579Z, end-time: 2024-07-15T08:33:21.690068Z, duration: 8, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/bin/python -m pip install --upgrade --no-cache-dir jinja2==2.11.3 markupsafe==2.0.1 Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting jinja2==2.11.3 Downloading Jinja2-2.11.3-py2.py3-none-any.whl.metadata (3.5 kB) Collecting markupsafe==2.0.1 Downloading MarkupSafe-2.0.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl.metadata (3.2 kB) Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl.metadata (1.5 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl.metadata (3.3 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl.metadata (2.3 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 861.9/861.9 kB 14.6 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl.metadata (4.5 kB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.13-py3-none-any.whl.metadata (3.0 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl.metadata (5.6 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl.metadata (463 bytes) Collecting sphinx<2 Downloading Sphinx-1.8.6-py2.py3-none-any.whl.metadata (7.3 kB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl.metadata (3.0 kB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.4-py2.py3-none-any.whl.metadata (1.4 kB) Collecting future (from commonmark==0.8.1) Downloading future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting six>=1.5 (from sphinx<2) Downloading six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) Collecting snowballstemmer>=1.1 (from sphinx<2) Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl.metadata (6.5 kB) Collecting babel!=2.0,>=1.3 (from sphinx<2) Downloading Babel-2.14.0-py3-none-any.whl.metadata (1.6 kB) Collecting imagesize (from sphinx<2) Downloading imagesize-1.4.1-py2.py3-none-any.whl.metadata (1.5 kB) Collecting requests>=2.0.0 (from sphinx<2) Downloading requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) Collecting packaging (from sphinx<2) Downloading packaging-24.0-py3-none-any.whl.metadata (3.2 kB) Collecting sphinxcontrib-websupport (from sphinx<2) Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl.metadata (1.5 kB) Collecting pytz>=2015.7 (from babel!=2.0,>=1.3->sphinx<2) Downloading pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB) Collecting charset-normalizer<4,>=2 (from requests>=2.0.0->sphinx<2) Downloading charset_normalizer-3.3.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) Collecting idna<4,>=2.5 (from requests>=2.0.0->sphinx<2) Downloading idna-3.7-py3-none-any.whl.metadata (9.9 kB) Collecting urllib3<3,>=1.21.1 (from requests>=2.0.0->sphinx<2) Downloading urllib3-2.0.7-py3-none-any.whl.metadata (6.6 kB) Collecting certifi>=2017.4.17 (from requests>=2.0.0->sphinx<2) Downloading certifi-2024.7.4-py3-none-any.whl.metadata (2.2 kB) Collecting sphinxcontrib-serializinghtml (from sphinxcontrib-websupport->sphinx<2) Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl.metadata (1.5 kB) Downloading Jinja2-2.11.3-py2.py3-none-any.whl (125 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 125.7/125.7 kB 198.4 MB/s eta 0:00:00 Downloading MarkupSafe-2.0.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (31 kB) Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 849.5/849.5 kB 166.2 MB/s eta 0:00:00 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 576.0/576.0 kB 197.2 MB/s eta 0:00:00 Downloading docutils-0.14-py3-none-any.whl (543 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 543.2/543.2 kB 208.3 MB/s eta 0:00:00 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 127.8 MB/s eta 0:00:00 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 47.4/47.4 kB 158.7 MB/s eta 0:00:00 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Downloading alabaster-0.7.13-py3-none-any.whl (13 kB) Downloading Sphinx-1.8.6-py2.py3-none-any.whl (3.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 164.2 MB/s eta 0:00:00 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.4/6.4 MB 168.6 MB/s eta 0:00:00 Downloading readthedocs_sphinx_ext-1.0.4-py2.py3-none-any.whl (28 kB) Downloading Babel-2.14.0-py3-none-any.whl (11.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.0/11.0 MB 179.1 MB/s eta 0:00:00 Downloading requests-2.31.0-py3-none-any.whl (62 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.6/62.6 kB 169.3 MB/s eta 0:00:00 Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 93.0/93.0 kB 202.3 MB/s eta 0:00:00 Downloading future-1.0.0-py3-none-any.whl (491 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 491.3/491.3 kB 230.7 MB/s eta 0:00:00 Downloading imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) Downloading packaging-24.0-py3-none-any.whl (53 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 53.5/53.5 kB 152.2 MB/s eta 0:00:00 Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Downloading certifi-2024.7.4-py3-none-any.whl (162 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 163.0/163.0 kB 212.9 MB/s eta 0:00:00 Downloading charset_normalizer-3.3.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (136 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 136.8/136.8 kB 208.6 MB/s eta 0:00:00 Downloading idna-3.7-py3-none-any.whl (66 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 66.8/66.8 kB 190.2 MB/s eta 0:00:00 Downloading pytz-2024.1-py2.py3-none-any.whl (505 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 505.5/505.5 kB 195.7 MB/s eta 0:00:00 Downloading urllib3-2.0.7-py3-none-any.whl (124 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 124.2/124.2 kB 211.7 MB/s eta 0:00:00 Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 94.0/94.0 kB 193.6 MB/s eta 0:00:00 Building wheels for collected packages: mock Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23753 sha256=14bfd001b6e61514c2e506b4136ae66d3a2759e720be74cf1228e3cc3753f785 Stored in directory: /tmp/pip-ephem-wheel-cache-wnninv5g/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Successfully built mock Installing collected packages: snowballstemmer, pytz, Pygments, mock, docutils, urllib3, sphinxcontrib-serializinghtml, six, setuptools, pillow, packaging, markupsafe, imagesize, idna, future, charset-normalizer, certifi, babel, alabaster, sphinxcontrib-websupport, requests, jinja2, commonmark, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark Attempting uninstall: setuptools Found existing installation: setuptools 68.0.0 Uninstalling setuptools-68.0.0: Successfully uninstalled setuptools-68.0.0 Successfully installed Pygments-2.3.1 alabaster-0.7.13 babel-2.14.0 certifi-2024.7.4 charset-normalizer-3.3.2 commonmark-0.8.1 docutils-0.14 future-1.0.0 idna-3.7 imagesize-1.4.1 jinja2-2.11.3 markupsafe-2.0.1 mock-1.0.1 packaging-24.0 pillow-5.4.1 pytz-2024.1 readthedocs-sphinx-ext-1.0.4 recommonmark-0.5.0 requests-2.31.0 setuptools-41.0.1 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-2.0.7 [rtd-command-info] start-time: 2024-07-15T08:33:21.777812Z, end-time: 2024-07-15T08:33:33.693150Z, duration: 11, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/bin/python -m pip install --exists-action=w --no-cache-dir -r doc/requirements.txt Requirement already satisfied: sphinx in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (from -r doc/requirements.txt (line 1)) (1.8.6) Requirement already satisfied: sphinx_rtd_theme in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (from -r doc/requirements.txt (line 2)) (0.4.3) Collecting autoapi (from -r doc/requirements.txt (line 3)) Downloading autoapi-2.0.1.tar.gz (11 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting sphinx-autoapi (from -r doc/requirements.txt (line 4)) Downloading sphinx_autoapi-2.1.1-py2.py3-none-any.whl.metadata (6.1 kB) Collecting nbsphinx (from -r doc/requirements.txt (line 5)) Downloading nbsphinx-0.9.4-py3-none-any.whl.metadata (2.1 kB) Collecting urllib3<2.0.0 (from -r doc/requirements.txt (line 6)) Downloading urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 49.3/49.3 kB 3.2 MB/s eta 0:00:00 Requirement already satisfied: six>=1.5 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (1.16.0) Requirement already satisfied: Jinja2>=2.3 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (2.11.3) Requirement already satisfied: Pygments>=2.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (2.3.1) Requirement already satisfied: docutils<0.18,>=0.11 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (0.14) Requirement already satisfied: snowballstemmer>=1.1 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (2.2.0) Requirement already satisfied: babel!=2.0,>=1.3 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (2.14.0) Requirement already satisfied: alabaster<0.8,>=0.7 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (0.7.13) Requirement already satisfied: imagesize in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (1.4.1) Requirement already satisfied: requests>=2.0.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (2.31.0) Requirement already satisfied: setuptools in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (41.0.1) Requirement already satisfied: packaging in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (24.0) Requirement already satisfied: sphinxcontrib-websupport in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (1.2.4) Collecting anyascii (from sphinx-autoapi->-r doc/requirements.txt (line 4)) Downloading anyascii-0.3.2-py3-none-any.whl.metadata (1.5 kB) Collecting astroid>=2.7 (from sphinx-autoapi->-r doc/requirements.txt (line 4)) Downloading astroid-2.15.8-py3-none-any.whl.metadata (4.7 kB) Collecting PyYAML (from sphinx-autoapi->-r doc/requirements.txt (line 4)) Downloading PyYAML-6.0.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting sphinx (from -r doc/requirements.txt (line 1)) Downloading sphinx-5.3.0-py3-none-any.whl.metadata (6.4 kB) Collecting sphinxcontrib-applehelp (from sphinx->-r doc/requirements.txt (line 1)) Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl.metadata (1.4 kB) Collecting sphinxcontrib-devhelp (from sphinx->-r doc/requirements.txt (line 1)) Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl.metadata (1.4 kB) Collecting sphinxcontrib-jsmath (from sphinx->-r doc/requirements.txt (line 1)) Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl.metadata (1.4 kB) Collecting sphinxcontrib-htmlhelp>=2.0.0 (from sphinx->-r doc/requirements.txt (line 1)) Downloading sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl.metadata (1.6 kB) Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.5 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (from sphinx->-r doc/requirements.txt (line 1)) (1.1.5) Collecting sphinxcontrib-qthelp (from sphinx->-r doc/requirements.txt (line 1)) Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl.metadata (1.4 kB) Collecting Jinja2 (from sphinx-autoapi->-r doc/requirements.txt (line 4)) Downloading jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) Collecting Pygments>=2.12 (from sphinx->-r doc/requirements.txt (line 1)) Downloading pygments-2.17.2-py3-none-any.whl.metadata (2.6 kB) Collecting importlib-metadata>=4.8 (from sphinx->-r doc/requirements.txt (line 1)) Downloading importlib_metadata-6.7.0-py3-none-any.whl.metadata (4.9 kB) Collecting docutils<0.20,>=0.14 (from sphinx->-r doc/requirements.txt (line 1)) Downloading docutils-0.19-py3-none-any.whl.metadata (2.7 kB) Collecting nbconvert!=5.4,>=5.3 (from nbsphinx->-r doc/requirements.txt (line 5)) Downloading nbconvert-7.6.0-py3-none-any.whl.metadata (7.9 kB) Collecting traitlets>=5 (from nbsphinx->-r doc/requirements.txt (line 5)) Downloading traitlets-5.9.0-py3-none-any.whl.metadata (10 kB) Collecting nbformat (from nbsphinx->-r doc/requirements.txt (line 5)) Downloading nbformat-5.8.0-py3-none-any.whl.metadata (3.5 kB) Collecting lazy-object-proxy>=1.4.0 (from astroid>=2.7->sphinx-autoapi->-r doc/requirements.txt (line 4)) Downloading lazy_object_proxy-1.9.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.6 kB) Collecting typed-ast<2.0,>=1.4.0 (from astroid>=2.7->sphinx-autoapi->-r doc/requirements.txt (line 4)) Downloading typed_ast-1.5.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.7 kB) Collecting wrapt<2,>=1.11 (from astroid>=2.7->sphinx-autoapi->-r doc/requirements.txt (line 4)) Downloading wrapt-1.16.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) Collecting typing-extensions>=4.0.0 (from astroid>=2.7->sphinx-autoapi->-r doc/requirements.txt (line 4)) Downloading typing_extensions-4.7.1-py3-none-any.whl.metadata (3.1 kB) Requirement already satisfied: pytz>=2015.7 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (from babel!=2.0,>=1.3->sphinx->-r doc/requirements.txt (line 1)) (2024.1) Collecting zipp>=0.5 (from importlib-metadata>=4.8->sphinx->-r doc/requirements.txt (line 1)) Downloading zipp-3.15.0-py3-none-any.whl.metadata (3.7 kB) Requirement already satisfied: MarkupSafe>=2.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (from Jinja2->sphinx-autoapi->-r doc/requirements.txt (line 4)) (2.0.1) Collecting beautifulsoup4 (from nbconvert!=5.4,>=5.3->nbsphinx->-r doc/requirements.txt (line 5)) Downloading beautifulsoup4-4.12.3-py3-none-any.whl.metadata (3.8 kB) Collecting bleach!=5.0.0 (from nbconvert!=5.4,>=5.3->nbsphinx->-r doc/requirements.txt (line 5)) Downloading bleach-6.0.0-py3-none-any.whl.metadata (29 kB) Collecting defusedxml (from nbconvert!=5.4,>=5.3->nbsphinx->-r doc/requirements.txt (line 5)) Downloading defusedxml-0.7.1-py2.py3-none-any.whl.metadata (32 kB) Collecting jupyter-core>=4.7 (from nbconvert!=5.4,>=5.3->nbsphinx->-r doc/requirements.txt (line 5)) Downloading jupyter_core-4.12.0-py3-none-any.whl.metadata (4.7 kB) Collecting jupyterlab-pygments (from nbconvert!=5.4,>=5.3->nbsphinx->-r doc/requirements.txt (line 5)) Downloading jupyterlab_pygments-0.2.2-py2.py3-none-any.whl.metadata (1.9 kB) Collecting mistune<4,>=2.0.3 (from nbconvert!=5.4,>=5.3->nbsphinx->-r doc/requirements.txt (line 5)) Downloading mistune-3.0.2-py3-none-any.whl.metadata (1.7 kB) Collecting nbclient>=0.5.0 (from nbconvert!=5.4,>=5.3->nbsphinx->-r doc/requirements.txt (line 5)) Downloading nbclient-0.7.4-py3-none-any.whl.metadata (7.9 kB) Collecting pandocfilters>=1.4.1 (from nbconvert!=5.4,>=5.3->nbsphinx->-r doc/requirements.txt (line 5)) Downloading pandocfilters-1.5.1-py2.py3-none-any.whl.metadata (9.0 kB) Collecting tinycss2 (from nbconvert!=5.4,>=5.3->nbsphinx->-r doc/requirements.txt (line 5)) Downloading tinycss2-1.2.1-py3-none-any.whl.metadata (3.0 kB) Collecting fastjsonschema (from nbformat->nbsphinx->-r doc/requirements.txt (line 5)) Downloading fastjsonschema-2.20.0-py3-none-any.whl.metadata (2.1 kB) Collecting jsonschema>=2.6 (from nbformat->nbsphinx->-r doc/requirements.txt (line 5)) Downloading jsonschema-4.17.3-py3-none-any.whl.metadata (7.9 kB) Requirement already satisfied: charset-normalizer<4,>=2 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->-r doc/requirements.txt (line 1)) (3.3.2) Requirement already satisfied: idna<4,>=2.5 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->-r doc/requirements.txt (line 1)) (3.7) Requirement already satisfied: certifi>=2017.4.17 in /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages (from requests>=2.0.0->sphinx->-r doc/requirements.txt (line 1)) (2024.7.4) Collecting webencodings (from bleach!=5.0.0->nbconvert!=5.4,>=5.3->nbsphinx->-r doc/requirements.txt (line 5)) Downloading webencodings-0.5.1-py2.py3-none-any.whl.metadata (2.1 kB) Collecting attrs>=17.4.0 (from jsonschema>=2.6->nbformat->nbsphinx->-r doc/requirements.txt (line 5)) Downloading attrs-23.2.0-py3-none-any.whl.metadata (9.5 kB) Collecting importlib-resources>=1.4.0 (from jsonschema>=2.6->nbformat->nbsphinx->-r doc/requirements.txt (line 5)) Downloading importlib_resources-5.12.0-py3-none-any.whl.metadata (4.1 kB) Collecting pkgutil-resolve-name>=1.3.10 (from jsonschema>=2.6->nbformat->nbsphinx->-r doc/requirements.txt (line 5)) Downloading pkgutil_resolve_name-1.3.10-py3-none-any.whl.metadata (624 bytes) Collecting pyrsistent!=0.17.0,!=0.17.1,!=0.17.2,>=0.14.0 (from jsonschema>=2.6->nbformat->nbsphinx->-r doc/requirements.txt (line 5)) Downloading pyrsistent-0.19.3-py3-none-any.whl.metadata (27 kB) Collecting jupyter-client>=6.1.12 (from nbclient>=0.5.0->nbconvert!=5.4,>=5.3->nbsphinx->-r doc/requirements.txt (line 5)) Downloading jupyter_client-7.4.9-py3-none-any.whl.metadata (8.5 kB) Collecting soupsieve>1.2 (from beautifulsoup4->nbconvert!=5.4,>=5.3->nbsphinx->-r doc/requirements.txt (line 5)) Downloading soupsieve-2.4.1-py3-none-any.whl.metadata (4.7 kB) Collecting entrypoints (from jupyter-client>=6.1.12->nbclient>=0.5.0->nbconvert!=5.4,>=5.3->nbsphinx->-r doc/requirements.txt (line 5)) Downloading entrypoints-0.4-py3-none-any.whl.metadata (2.6 kB) Collecting nest-asyncio>=1.5.4 (from jupyter-client>=6.1.12->nbclient>=0.5.0->nbconvert!=5.4,>=5.3->nbsphinx->-r doc/requirements.txt (line 5)) Downloading nest_asyncio-1.6.0-py3-none-any.whl.metadata (2.8 kB) Collecting python-dateutil>=2.8.2 (from jupyter-client>=6.1.12->nbclient>=0.5.0->nbconvert!=5.4,>=5.3->nbsphinx->-r doc/requirements.txt (line 5)) Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) Collecting pyzmq>=23.0 (from jupyter-client>=6.1.12->nbclient>=0.5.0->nbconvert!=5.4,>=5.3->nbsphinx->-r doc/requirements.txt (line 5)) Downloading pyzmq-26.0.3-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.metadata (6.1 kB) Collecting tornado>=6.2 (from jupyter-client>=6.1.12->nbclient>=0.5.0->nbconvert!=5.4,>=5.3->nbsphinx->-r doc/requirements.txt (line 5)) Downloading tornado-6.2-cp37-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB) Downloading sphinx_autoapi-2.1.1-py2.py3-none-any.whl (54 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.2/54.2 kB 26.6 MB/s eta 0:00:00 Downloading sphinx-5.3.0-py3-none-any.whl (3.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.2/3.2 MB 45.6 MB/s eta 0:00:00 Downloading nbsphinx-0.9.4-py3-none-any.whl (31 kB) Downloading urllib3-1.26.19-py2.py3-none-any.whl (143 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 143.9/143.9 kB 190.9 MB/s eta 0:00:00 Downloading astroid-2.15.8-py3-none-any.whl (278 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 278.3/278.3 kB 199.3 MB/s eta 0:00:00 Downloading docutils-0.19-py3-none-any.whl (570 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 570.5/570.5 kB 223.1 MB/s eta 0:00:00 Downloading importlib_metadata-6.7.0-py3-none-any.whl (22 kB) Downloading jinja2-3.1.4-py3-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.3/133.3 kB 197.4 MB/s eta 0:00:00 Downloading nbconvert-7.6.0-py3-none-any.whl (290 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 290.4/290.4 kB 202.2 MB/s eta 0:00:00 Downloading nbformat-5.8.0-py3-none-any.whl (77 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 77.4/77.4 kB 191.8 MB/s eta 0:00:00 Downloading pygments-2.17.2-py3-none-any.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 213.0 MB/s eta 0:00:00 Downloading sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl (100 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100.5/100.5 kB 177.7 MB/s eta 0:00:00 Downloading traitlets-5.9.0-py3-none-any.whl (117 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 117.4/117.4 kB 204.5 MB/s eta 0:00:00 Downloading anyascii-0.3.2-py3-none-any.whl (289 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 289.9/289.9 kB 222.0 MB/s eta 0:00:00 Downloading PyYAML-6.0.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (670 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 670.1/670.1 kB 216.4 MB/s eta 0:00:00 Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 121.2/121.2 kB 203.3 MB/s eta 0:00:00 Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 84.7/84.7 kB 193.3 MB/s eta 0:00:00 Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 90.6/90.6 kB 209.8 MB/s eta 0:00:00 Downloading bleach-6.0.0-py3-none-any.whl (162 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 162.5/162.5 kB 204.7 MB/s eta 0:00:00 Downloading jsonschema-4.17.3-py3-none-any.whl (90 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 90.4/90.4 kB 200.9 MB/s eta 0:00:00 Downloading jupyter_core-4.12.0-py3-none-any.whl (89 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 89.9/89.9 kB 200.5 MB/s eta 0:00:00 Downloading lazy_object_proxy-1.9.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (58 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 58.5/58.5 kB 190.1 MB/s eta 0:00:00 Downloading mistune-3.0.2-py3-none-any.whl (47 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 48.0/48.0 kB 149.2 MB/s eta 0:00:00 Downloading nbclient-0.7.4-py3-none-any.whl (73 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 73.1/73.1 kB 189.3 MB/s eta 0:00:00 Downloading pandocfilters-1.5.1-py2.py3-none-any.whl (8.7 kB) Downloading typed_ast-1.5.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (778 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 778.3/778.3 kB 237.6 MB/s eta 0:00:00 Downloading typing_extensions-4.7.1-py3-none-any.whl (33 kB) Downloading wrapt-1.16.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (77 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 77.5/77.5 kB 146.9 MB/s eta 0:00:00 Downloading zipp-3.15.0-py3-none-any.whl (6.8 kB) Downloading beautifulsoup4-4.12.3-py3-none-any.whl (147 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 147.9/147.9 kB 208.5 MB/s eta 0:00:00 Downloading defusedxml-0.7.1-py2.py3-none-any.whl (25 kB) Downloading fastjsonschema-2.20.0-py3-none-any.whl (23 kB) Downloading jupyterlab_pygments-0.2.2-py2.py3-none-any.whl (21 kB) Downloading tinycss2-1.2.1-py3-none-any.whl (21 kB) Downloading attrs-23.2.0-py3-none-any.whl (60 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 60.8/60.8 kB 196.4 MB/s eta 0:00:00 Downloading importlib_resources-5.12.0-py3-none-any.whl (36 kB) Downloading jupyter_client-7.4.9-py3-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.5/133.5 kB 219.0 MB/s eta 0:00:00 Downloading pkgutil_resolve_name-1.3.10-py3-none-any.whl (4.7 kB) Downloading pyrsistent-0.19.3-py3-none-any.whl (57 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 57.5/57.5 kB 185.7 MB/s eta 0:00:00 Downloading soupsieve-2.4.1-py3-none-any.whl (36 kB) Downloading webencodings-0.5.1-py2.py3-none-any.whl (11 kB) Downloading nest_asyncio-1.6.0-py3-none-any.whl (5.2 kB) Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 229.9/229.9 kB 219.9 MB/s eta 0:00:00 Downloading pyzmq-26.0.3-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (908 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 909.0/909.0 kB 233.9 MB/s eta 0:00:00 Downloading tornado-6.2-cp37-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (423 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 424.0/424.0 kB 234.9 MB/s eta 0:00:00 Downloading entrypoints-0.4-py3-none-any.whl (5.3 kB) Building wheels for collected packages: autoapi Building wheel for autoapi (setup.py): started Building wheel for autoapi (setup.py): finished with status 'done' Created wheel for autoapi: filename=autoapi-2.0.1-py3-none-any.whl size=13606 sha256=da9309d6fd0fa07f67605c9f8c77527e06f7d27e04ced87e41665b074b7fa983 Stored in directory: /tmp/pip-ephem-wheel-cache-j4b8wyt8/wheels/ca/26/79/18abdd5beff508f752fdd093843eddd65c9247c2e8f819657e Successfully built autoapi Installing collected packages: webencodings, fastjsonschema, zipp, wrapt, urllib3, typing-extensions, typed-ast, traitlets, tornado, tinycss2, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, soupsieve, pyzmq, PyYAML, python-dateutil, pyrsistent, Pygments, pkgutil-resolve-name, pandocfilters, nest-asyncio, mistune, lazy-object-proxy, jupyterlab-pygments, Jinja2, entrypoints, docutils, defusedxml, bleach, anyascii, jupyter-core, importlib-resources, importlib-metadata, beautifulsoup4, astroid, sphinx, jupyter-client, attrs, sphinx-autoapi, jsonschema, autoapi, nbformat, nbclient, nbconvert, nbsphinx Attempting uninstall: urllib3 Found existing installation: urllib3 2.0.7 Uninstalling urllib3-2.0.7: Successfully uninstalled urllib3-2.0.7 Attempting uninstall: Pygments Found existing installation: Pygments 2.3.1 Uninstalling Pygments-2.3.1: Successfully uninstalled Pygments-2.3.1 Attempting uninstall: Jinja2 Found existing installation: Jinja2 2.11.3 Uninstalling Jinja2-2.11.3: Successfully uninstalled Jinja2-2.11.3 Attempting uninstall: docutils Found existing installation: docutils 0.14 Uninstalling docutils-0.14: Successfully uninstalled docutils-0.14 Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.6 Uninstalling Sphinx-1.8.6: Successfully uninstalled Sphinx-1.8.6 Successfully installed Jinja2-3.1.4 PyYAML-6.0.1 Pygments-2.17.2 anyascii-0.3.2 astroid-2.15.8 attrs-23.2.0 autoapi-2.0.1 beautifulsoup4-4.12.3 bleach-6.0.0 defusedxml-0.7.1 docutils-0.19 entrypoints-0.4 fastjsonschema-2.20.0 importlib-metadata-6.7.0 importlib-resources-5.12.0 jsonschema-4.17.3 jupyter-client-7.4.9 jupyter-core-4.12.0 jupyterlab-pygments-0.2.2 lazy-object-proxy-1.9.0 mistune-3.0.2 nbclient-0.7.4 nbconvert-7.6.0 nbformat-5.8.0 nbsphinx-0.9.4 nest-asyncio-1.6.0 pandocfilters-1.5.1 pkgutil-resolve-name-1.3.10 pyrsistent-0.19.3 python-dateutil-2.9.0.post0 pyzmq-26.0.3 soupsieve-2.4.1 sphinx-5.3.0 sphinx-autoapi-2.1.1 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 tinycss2-1.2.1 tornado-6.2 traitlets-5.9.0 typed-ast-1.5.5 typing-extensions-4.7.1 urllib3-1.26.19 webencodings-0.5.1 wrapt-1.16.0 zipp-3.15.0 [rtd-command-info] start-time: 2024-07-15T08:33:34.397494Z, end-time: 2024-07-15T08:33:34.456595Z, duration: 0, exit-code: 0 cat doc/conf.py # -*- coding: utf-8 -*- # # Configuration file for the Sphinx documentation builder. # # This file does only contain a selection of the most common options. For a # full list see the documentation: # http://www.sphinx-doc.org/en/master/config # -- Path setup -------------------------------------------------------------- # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # import os import sys sys.path.insert(0, os.path.abspath('..')) import sphinx_rtd_theme # -- Project information ----------------------------------------------------- project = 'SCS Toolbox' copyright = '2021, SCS' author = 'SCS' # The short X.Y version version = '' # The full version, including alpha/beta/rc tags release = '' # -- General configuration --------------------------------------------------- # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.viewcode', 'sphinx.ext.coverage', 'sphinx.ext.napoleon', 'sphinx.ext.extlinks', 'autoapi.extension', 'sphinx_rtd_theme', 'nbsphinx' ] nbsphinx_execute = 'never' autoapi_dirs = ['../src/toolbox_scs'] autoapi_ignore = ['*/deprecated/*'] extlinks = {'issue': ('https://git.xfel.eu/SCS/ToolBox/-/issues/%s', 'issue:%s'), 'mr': ('https://git.xfel.eu/SCS/ToolBox/-/merge_requests/%s', 'MR:%s'), 'commit': ('https://git.xfel.eu/SCS/ToolBox/-/commit/%s', 'commit:%s') } # Don't add .txt suffix to source files: html_sourcelink_suffix = '' # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The master toctree document. master_doc = 'index' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This pattern also affects html_static_path and html_extra_path. exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The name of the Pygments (syntax highlighting) style to use. pygments_style = None # -- Options for HTML output ------------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # #html_theme = 'alabaster' html_theme = 'sphinx_rtd_theme' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. # # html_theme_options = {} # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] # Custom sidebar templates, must be a dictionary that maps document names # to template names. # # The default sidebars (for documents that don't match any pattern) are # defined by theme itself. Builtin themes are using these templates by # default: ``['localtoc.html', 'relations.html', 'sourcelink.html', # 'searchbox.html']``. # # html_sidebars = {} # -- Options for HTMLHelp output --------------------------------------------- # Output file base name for HTML help builder. htmlhelp_basename = 'SCSToolboxdoc' # -- Options for LaTeX output ------------------------------------------------ latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'SCSToolbox.tex', 'SCS Toolbox Documentation', 'SCS', 'manual'), ] # -- Options for manual page output ------------------------------------------ # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'scstoolbox', 'SCS Toolbox Documentation', [author], 1) ] # -- Options for Texinfo output ---------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'SCSToolbox', 'SCS Toolbox Documentation', author, 'SCSToolbox', 'One line description of project.', 'Miscellaneous'), ] # -- Options for Epub output ------------------------------------------------- # Bibliographic Dublin Core info. epub_title = project # The unique identifier of the text. This can be a ISBN number # or the project homepage. # # epub_identifier = '' # A unique identification for the text. # # epub_uid = '' # A list of files that should not be packed into the epub file. epub_exclude_files = ['search.html'] # -- Extension configuration ------------------------------------------------- ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import importlib import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: theme = importlib.import_module('sphinx_rtd_theme') html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] if globals().get('websupport2_base_url', False): websupport2_base_url = 'http://rtd.xfel.eu/websupport' websupport2_static_url = '/static/' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "media/", 'STATIC_URL': "/static/", 'PRODUCTION_DOMAIN': "rtd.xfel.eu", 'versions': [ ("latest", "/en/latest/"), ("fix-ci-autoapi-failure", "/en/fix-ci-autoapi-failure/"), ], 'downloads': [ ("pdf", "//rtd.xfel.eu/downloads/scs-toolbox/latest/pdf/"), ], 'subprojects': [ ], 'slug': 'scs-toolbox', 'name': u'SCS ToolBox', 'rtd_language': u'en', 'programming_language': u'words', 'canonical_url': 'http://rtd.xfel.eu/docs/scs-toolbox/en/latest/', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/doc/', 'api_host': 'http://rtd.xfel.eu', 'github_user': 'None', 'proxied_api_host': '/_', 'github_repo': 'None', 'github_version': 'master', 'display_github': False, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'master', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': '', 'global_analytics_code': 'None', 'commit': '352f6fe8', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2024-07-15T08:33:34.548027Z, end-time: 2024-07-15T08:34:09.070925Z, duration: 34, exit-code: 0 python /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/bin/sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v5.3.0 WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English). making output directory... done WARNING: html_static_path entry '_static' does not exist [AutoAPI] Ignoring /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/deprecated/dssc_single_module.py [AutoAPI] Ignoring /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/deprecated/dssc_bkp.py [AutoAPI] Reading files... [ 2%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/__init__.py [AutoAPI] Reading files... [ 4%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/mnemonics_machinery.py [AutoAPI] Reading files... [ 7%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/constants.py [AutoAPI] Reading files... [ 9%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/load.py [AutoAPI] Reading files... [ 12%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/misc/__init__.py [AutoAPI] Reading files... [ 14%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/misc/laser_utils.py [AutoAPI] Reading files... [ 17%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/misc/undulator.py [AutoAPI] Reading files... [ 19%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/misc/bunch_pattern_external.py [AutoAPI] Reading files... [ 21%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/misc/bunch_pattern.py [AutoAPI] Reading files... [ 24%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/util/__init__.py [AutoAPI] Reading files... [ 26%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/util/pkg.py [AutoAPI] Reading files... [ 29%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/util/exceptions.py [AutoAPI] Reading files... [ 31%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/base/__init__.py [AutoAPI] Reading files... [ 34%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/base/knife_edge.py [AutoAPI] Reading files... [ 36%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/base/tests/__init__.py [AutoAPI] Reading files... [ 39%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/base/tests/test_knife_edge.py [AutoAPI] Reading files... [ 41%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/viking.py [AutoAPI] Reading files... [ 43%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/dssc_processing.py [AutoAPI] Reading files... [ 46%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/__init__.py [AutoAPI] Reading files... [ 48%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/hrixs.py [AutoAPI] Reading files... [ 51%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/azimuthal_integrator.py [AutoAPI] Reading files... [ 53%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/dssc_data.py [AutoAPI] Reading files... [ 56%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/pes.py [AutoAPI] Reading files... [ 58%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/dssc_plot.py [AutoAPI] Reading files... [ 60%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/fccd.py [AutoAPI] Reading files... [ 63%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/bam_detectors.py [AutoAPI] Reading files... [ 65%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/digitizers.py [AutoAPI] Reading files... [ 68%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/dssc_misc.py [AutoAPI] Reading files... [ 70%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/dssc.py [AutoAPI] Reading files... [ 73%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/xgm.py [AutoAPI] Reading files... [ 75%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/__init__.py [AutoAPI] Reading files... [ 78%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/test_hrixs.py [AutoAPI] Reading files... [ 80%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/test_dssc_cls.py [AutoAPI] Reading files... [ 82%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/test_top_level.py [AutoAPI] Reading files... [ 85%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/test_misc.py [AutoAPI] Reading files... [ 87%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/test_utils.py [AutoAPI] Reading files... [ 90%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/routines/__init__.py [AutoAPI] Reading files... [ 92%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/routines/XAS.py [AutoAPI] Reading files... [ 95%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/routines/Reflectivity.py [AutoAPI] Reading files... [ 97%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/routines/knife_edge.py [AutoAPI] Reading files... [100%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/routines/boz.py WARNING: Cannot resolve import of unknown module toolbox_scs.util.data_access in toolbox_scs.test.test_utils [AutoAPI] Mapping Data... [ 2%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/__init__.py [AutoAPI] Mapping Data... [ 4%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/mnemonics_machinery.py [AutoAPI] Mapping Data... [ 7%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/constants.py [AutoAPI] Mapping Data... [ 9%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/load.py [AutoAPI] Mapping Data... [ 12%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/misc/__init__.py [AutoAPI] Mapping Data... [ 14%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/misc/laser_utils.py [AutoAPI] Mapping Data... [ 17%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/misc/undulator.py [AutoAPI] Mapping Data... [ 19%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/misc/bunch_pattern_external.py [AutoAPI] Mapping Data... [ 21%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/misc/bunch_pattern.py [AutoAPI] Mapping Data... [ 24%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/util/__init__.py [AutoAPI] Mapping Data... [ 26%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/util/pkg.py [AutoAPI] Mapping Data... [ 29%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/util/exceptions.py [AutoAPI] Mapping Data... [ 31%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/base/__init__.py [AutoAPI] Mapping Data... [ 34%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/base/knife_edge.py [AutoAPI] Mapping Data... [ 36%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/base/tests/__init__.py [AutoAPI] Mapping Data... [ 39%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/base/tests/test_knife_edge.py [AutoAPI] Mapping Data... [ 41%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/viking.py [AutoAPI] Mapping Data... [ 43%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/dssc_processing.py [AutoAPI] Mapping Data... [ 46%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/__init__.py [AutoAPI] Mapping Data... [ 48%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/hrixs.py [AutoAPI] Mapping Data... [ 51%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/azimuthal_integrator.py [AutoAPI] Mapping Data... [ 53%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/dssc_data.py [AutoAPI] Mapping Data... [ 56%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/pes.py [AutoAPI] Mapping Data... [ 58%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/dssc_plot.py [AutoAPI] Mapping Data... [ 60%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/fccd.py [AutoAPI] Mapping Data... [ 63%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/bam_detectors.py [AutoAPI] Mapping Data... [ 65%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/digitizers.py [AutoAPI] Mapping Data... [ 68%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/dssc_misc.py [AutoAPI] Mapping Data... [ 70%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/dssc.py [AutoAPI] Mapping Data... [ 73%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/xgm.py [AutoAPI] Mapping Data... [ 75%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/__init__.py [AutoAPI] Mapping Data... [ 78%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/test_hrixs.py [AutoAPI] Mapping Data... [ 80%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/test_dssc_cls.py [AutoAPI] Mapping Data... [ 82%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/test_top_level.py [AutoAPI] Mapping Data... [ 85%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/test_misc.py [AutoAPI] Mapping Data... [ 87%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/test_utils.py [AutoAPI] Mapping Data... [ 90%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/routines/__init__.py [AutoAPI] Mapping Data... [ 92%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/routines/XAS.py [AutoAPI] Mapping Data... [ 95%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/routines/Reflectivity.py [AutoAPI] Mapping Data... [ 97%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/routines/knife_edge.py [AutoAPI] Mapping Data... [100%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/routines/boz.py [AutoAPI] Rendering Data... [ 2%] toolbox_scs [AutoAPI] Rendering Data... [ 4%] toolbox_scs.mnemonics_machinery [AutoAPI] Rendering Data... [ 7%] toolbox_scs.constants [AutoAPI] Rendering Data... [ 9%] toolbox_scs.load [AutoAPI] Rendering Data... [ 12%] toolbox_scs.misc [AutoAPI] Rendering Data... [ 14%] toolbox_scs.misc.laser_utils [AutoAPI] Rendering Data... [ 17%] toolbox_scs.misc.undulator [AutoAPI] Rendering Data... [ 19%] toolbox_scs.misc.bunch_pattern_external [AutoAPI] Rendering Data... [ 21%] toolbox_scs.misc.bunch_pattern [AutoAPI] Rendering Data... [ 24%] toolbox_scs.util [AutoAPI] Rendering Data... [ 26%] toolbox_scs.util.pkg [AutoAPI] Rendering Data... [ 29%] toolbox_scs.util.exceptions [AutoAPI] Rendering Data... [ 31%] toolbox_scs.base [AutoAPI] Rendering Data... [ 34%] toolbox_scs.base.knife_edge [AutoAPI] Rendering Data... [ 36%] toolbox_scs.base.tests [AutoAPI] Rendering Data... [ 39%] toolbox_scs.base.tests.test_knife_edge [AutoAPI] Rendering Data... [ 41%] toolbox_scs.detectors.viking [AutoAPI] Rendering Data... [ 43%] toolbox_scs.detectors.dssc_processing [AutoAPI] Rendering Data... [ 46%] toolbox_scs.detectors [AutoAPI] Rendering Data... [ 48%] toolbox_scs.detectors.hrixs [AutoAPI] Rendering Data... [ 51%] toolbox_scs.detectors.azimuthal_integrator [AutoAPI] Rendering Data... [ 53%] toolbox_scs.detectors.dssc_data [AutoAPI] Rendering Data... [ 56%] toolbox_scs.detectors.pes [AutoAPI] Rendering Data... [ 58%] toolbox_scs.detectors.dssc_plot [AutoAPI] Rendering Data... [ 60%] toolbox_scs.detectors.fccd [AutoAPI] Rendering Data... [ 63%] toolbox_scs.detectors.bam_detectors [AutoAPI] Rendering Data... [ 65%] toolbox_scs.detectors.digitizers [AutoAPI] Rendering Data... [ 68%] toolbox_scs.detectors.dssc_misc [AutoAPI] Rendering Data... [ 70%] toolbox_scs.detectors.dssc [AutoAPI] Rendering Data... [ 73%] toolbox_scs.detectors.xgm [AutoAPI] Rendering Data... [ 75%] toolbox_scs.test [AutoAPI] Rendering Data... [ 78%] toolbox_scs.test.test_hrixs [AutoAPI] Rendering Data... [ 80%] toolbox_scs.test.test_dssc_cls [AutoAPI] Rendering Data... [ 82%] toolbox_scs.test.test_top_level [AutoAPI] Rendering Data... [ 85%] toolbox_scs.test.test_misc [AutoAPI] Rendering Data... [ 87%] toolbox_scs.test.test_utils [AutoAPI] Rendering Data... [ 90%] toolbox_scs.routines [AutoAPI] Rendering Data... [ 92%] toolbox_scs.routines.XAS [AutoAPI] Rendering Data... [ 95%] toolbox_scs.routines.Reflectivity [AutoAPI] Rendering Data... [ 97%] toolbox_scs.routines.knife_edge [AutoAPI] Rendering Data... [100%] toolbox_scs.routines.boz [autosummary] generating autosummary for: Analysis_of_Viking_spectrometer_data.ipynb, Azimuthal integration of DSSC with pyFAI.ipynb, BOZ analysis part I.a Correction determination.ipynb, BOZ analysis part I.b Correction validation.ipynb, BOZ analysis part II.1 Small data.ipynb, BOZ analysis part II.2 Binning.ipynb, DSSC create geometry.ipynb, DSSC fine delay with SCS toolbox.ipynb, DSSC scattering time-delay.ipynb, Dask DSSC module binning.ipynb, ..., OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb, PES_spectra_extraction.ipynb, Transient reflectivity measurement.ipynb, bunch_pattern_decoding.rst, changelog.rst, dssc/DSSCBinner.rst, howtos.rst, index.rst, load.rst, maintainers.rst building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 24 source files that are out of date updating environment: [new config] 66 added, 0 changed, 0 removed reading sources... [ 1%] Analysis_of_Viking_spectrometer_data reading sources... [ 3%] Azimuthal integration of DSSC with pyFAI reading sources... [ 4%] BOZ analysis part I.a Correction determination reading sources... [ 6%] BOZ analysis part I.b Correction validation reading sources... [ 7%] BOZ analysis part II.1 Small data reading sources... [ 9%] BOZ analysis part II.2 Binning reading sources... [ 10%] DSSC create geometry reading sources... [ 12%] DSSC fine delay with SCS toolbox reading sources... [ 13%] DSSC scattering time-delay reading sources... [ 15%] Dask DSSC module binning reading sources... [ 16%] HRIXS reading sources... [ 18%] How to extract peaks from digitizer traces reading sources... [ 19%] Knife edge scan and fluence calculation reading sources... [ 21%] Loading_data_in_memory reading sources... [ 22%] OnlineGPU BOZ analysis part I.a Correction determination S K-egde reading sources... [ 24%] PES_spectra_extraction reading sources... [ 25%] Transient reflectivity measurement reading sources... [ 27%] autoapi/index reading sources... [ 28%] autoapi/toolbox_scs/base/index reading sources... [ 30%] autoapi/toolbox_scs/base/knife_edge/index reading sources... [ 31%] autoapi/toolbox_scs/base/tests/index reading sources... [ 33%] autoapi/toolbox_scs/base/tests/test_knife_edge/index reading sources... [ 34%] autoapi/toolbox_scs/constants/index reading sources... [ 36%] autoapi/toolbox_scs/detectors/azimuthal_integrator/index reading sources... [ 37%] autoapi/toolbox_scs/detectors/bam_detectors/index reading sources... [ 39%] autoapi/toolbox_scs/detectors/digitizers/index reading sources... [ 40%] autoapi/toolbox_scs/detectors/dssc/index reading sources... [ 42%] autoapi/toolbox_scs/detectors/dssc_data/index reading sources... [ 43%] autoapi/toolbox_scs/detectors/dssc_misc/index reading sources... [ 45%] autoapi/toolbox_scs/detectors/dssc_plot/index reading sources... [ 46%] autoapi/toolbox_scs/detectors/dssc_processing/index reading sources... [ 48%] autoapi/toolbox_scs/detectors/fccd/index reading sources... [ 50%] autoapi/toolbox_scs/detectors/hrixs/index reading sources... [ 51%] autoapi/toolbox_scs/detectors/index reading sources... [ 53%] autoapi/toolbox_scs/detectors/pes/index reading sources... [ 54%] autoapi/toolbox_scs/detectors/viking/index reading sources... [ 56%] autoapi/toolbox_scs/detectors/xgm/index reading sources... [ 57%] autoapi/toolbox_scs/index reading sources... [ 59%] autoapi/toolbox_scs/load/index reading sources... [ 60%] autoapi/toolbox_scs/misc/bunch_pattern/index reading sources... [ 62%] autoapi/toolbox_scs/misc/bunch_pattern_external/index reading sources... [ 63%] autoapi/toolbox_scs/misc/index reading sources... [ 65%] autoapi/toolbox_scs/misc/laser_utils/index reading sources... [ 66%] autoapi/toolbox_scs/misc/undulator/index reading sources... [ 68%] autoapi/toolbox_scs/mnemonics_machinery/index reading sources... [ 69%] autoapi/toolbox_scs/routines/Reflectivity/index reading sources... [ 71%] autoapi/toolbox_scs/routines/XAS/index reading sources... [ 72%] autoapi/toolbox_scs/routines/boz/index reading sources... [ 74%] autoapi/toolbox_scs/routines/index reading sources... [ 75%] autoapi/toolbox_scs/routines/knife_edge/index reading sources... [ 77%] autoapi/toolbox_scs/test/index reading sources... [ 78%] autoapi/toolbox_scs/test/test_dssc_cls/index reading sources... [ 80%] autoapi/toolbox_scs/test/test_hrixs/index reading sources... [ 81%] autoapi/toolbox_scs/test/test_misc/index reading sources... [ 83%] autoapi/toolbox_scs/test/test_top_level/index reading sources... [ 84%] autoapi/toolbox_scs/test/test_utils/index reading sources... [ 86%] autoapi/toolbox_scs/util/exceptions/index reading sources... [ 87%] autoapi/toolbox_scs/util/index reading sources... [ 89%] autoapi/toolbox_scs/util/pkg/index reading sources... [ 90%] bunch_pattern_decoding reading sources... [ 92%] changelog reading sources... [ 93%] dssc/DSSCBinner reading sources... [ 95%] howtos reading sources... [ 96%] index [AutoAPI] Adding AutoAPI TOCTree [autoapi/index] to index.rst reading sources... [ 98%] load reading sources... [100%] maintainers /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages/nbsphinx/__init__.py:1058: RuntimeWarning: You are using an unsupported version of pandoc (1.19.2.4). Your version must be at least (2.14.2) but less than (4.0.0). Refer to https://pandoc.org/installing.html. Continuing with doubts... nbconvert.utils.pandoc.check_pandoc_version() /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:3433: CRITICAL: Title level inconsistent: Peak fluence calculation using knife-edge scans: ------------------------------------------------ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:3451: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:3451: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:3506: CRITICAL: Title level inconsistent: Load scanning motor and laser photodiode data ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:3572: CRITICAL: Title level inconsistent: Check diode traces and region of integration for peak calculations ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:5807: CRITICAL: Title level inconsistent: Plot intensity vs. knife-edge positions, fit with erfc function ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:7990: CRITICAL: Title level inconsistent: OL power measurement ^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:8016: CRITICAL: Title level inconsistent: Fluence vs. laser power ^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:9096: CRITICAL: Title level inconsistent: Load runs with horizontal and vertical scans, normalize the transmitted signal by XGM ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:9676: CRITICAL: Title level inconsistent: Fit scan to erfc function and plot ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:11863: CRITICAL: Title level inconsistent: Load XGM data ^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:12357: CRITICAL: Title level inconsistent: Calibrate XGM fast data using photon flux and plot ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/base/knife_edge/index.rst:4: WARNING: duplicate object description of toolbox_scs.base.knife_edge, other instance in autoapi/toolbox_scs/base/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/dssc_misc/index.rst:71: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/dssc_misc/index.rst:30: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/fccd/index.rst:6: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:7: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/index.rst:642: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/index.rst:30: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/index.rst:7: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:717: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:30: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1578: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1595: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:29: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1716: WARNING: duplicate object description of toolbox_scs.__all__, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1727: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:8: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1812: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1869: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1880: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1893: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2007: WARNING: duplicate object description of toolbox_scs.__all__, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2018: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2025: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2041: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2120: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2196: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2267: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:8: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2287: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2398: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2421: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2470: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2526: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2541: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2544: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2547: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2566: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2687: WARNING: duplicate object description of toolbox_scs.__all__, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1636: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:4: WARNING: duplicate object description of toolbox_scs.load, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:49: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:66: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:29: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:139: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:85: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:8: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:126: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:61: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:8: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:146: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:203: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:214: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:227: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/laser_utils/index.rst:28: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/laser_utils/index.rst:41: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/laser_utils/index.rst:55: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/XAS/index.rst:40: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/XAS/index.rst:7: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/XAS/index.rst:47: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/XAS/index.rst:63: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:135: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:211: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:282: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:8: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:302: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:413: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:436: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:485: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:541: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:556: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:559: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:562: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:581: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:88: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:7: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:95: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:111: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:190: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:266: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:337: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:8: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:357: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:468: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:491: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:540: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:596: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:611: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:614: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:617: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:636: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/knife_edge/index.rst:4: WARNING: duplicate object description of toolbox_scs.routines.knife_edge, other instance in autoapi/toolbox_scs/routines/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_dssc_cls/index.rst:89: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_dssc_cls/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_hrixs/index.rst:47: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_hrixs/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_misc/index.rst:82: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_misc/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_top_level/index.rst:75: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_top_level/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_utils/index.rst:73: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_utils/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/index.rst:128: CRITICAL: Title level inconsistent: Contribute ~~~~~~~~~~ WARNING: nbsphinx_widgets_path not given and ipywidgets module unavailable looking for now-outdated files... none found pickling environment... done checking consistency... /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Analysis_of_Viking_spectrometer_data.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Azimuthal integration of DSSC with pyFAI.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.2 Binning.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC create geometry.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Dask DSSC module binning.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/HRIXS.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/How to extract peaks from digitizer traces.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Loading_data_in_memory.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/PES_spectra_extraction.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Transient reflectivity measurement.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/bunch_pattern_decoding.rst: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/dssc/DSSCBinner.rst: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/load.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 1%] Analysis_of_Viking_spectrometer_data writing output... [ 3%] Azimuthal integration of DSSC with pyFAI writing output... [ 4%] BOZ analysis part I.a Correction determination writing output... [ 6%] BOZ analysis part I.b Correction validation writing output... [ 7%] BOZ analysis part II.1 Small data writing output... [ 9%] BOZ analysis part II.2 Binning writing output... [ 10%] DSSC create geometry writing output... [ 12%] DSSC fine delay with SCS toolbox writing output... [ 13%] DSSC scattering time-delay writing output... [ 15%] Dask DSSC module binning writing output... [ 16%] HRIXS writing output... [ 18%] How to extract peaks from digitizer traces writing output... [ 19%] Knife edge scan and fluence calculation writing output... [ 21%] Loading_data_in_memory writing output... [ 22%] OnlineGPU BOZ analysis part I.a Correction determination S K-egde writing output... [ 24%] PES_spectra_extraction writing output... [ 25%] Transient reflectivity measurement writing output... [ 27%] autoapi/index writing output... [ 28%] autoapi/toolbox_scs/base/index writing output... [ 30%] autoapi/toolbox_scs/base/knife_edge/index writing output... [ 31%] autoapi/toolbox_scs/base/tests/index writing output... [ 33%] autoapi/toolbox_scs/base/tests/test_knife_edge/index writing output... [ 34%] autoapi/toolbox_scs/constants/index writing output... [ 36%] autoapi/toolbox_scs/detectors/azimuthal_integrator/index writing output... [ 37%] autoapi/toolbox_scs/detectors/bam_detectors/index writing output... [ 39%] autoapi/toolbox_scs/detectors/digitizers/index writing output... [ 40%] autoapi/toolbox_scs/detectors/dssc/index writing output... [ 42%] autoapi/toolbox_scs/detectors/dssc_data/index writing output... [ 43%] autoapi/toolbox_scs/detectors/dssc_misc/index writing output... [ 45%] autoapi/toolbox_scs/detectors/dssc_plot/index writing output... [ 46%] autoapi/toolbox_scs/detectors/dssc_processing/index writing output... [ 48%] autoapi/toolbox_scs/detectors/fccd/index writing output... [ 50%] autoapi/toolbox_scs/detectors/hrixs/index writing output... [ 51%] autoapi/toolbox_scs/detectors/index writing output... [ 53%] autoapi/toolbox_scs/detectors/pes/index writing output... [ 54%] autoapi/toolbox_scs/detectors/viking/index writing output... [ 56%] autoapi/toolbox_scs/detectors/xgm/index writing output... [ 57%] autoapi/toolbox_scs/index writing output... [ 59%] autoapi/toolbox_scs/load/index writing output... [ 60%] autoapi/toolbox_scs/misc/bunch_pattern/index writing output... [ 62%] autoapi/toolbox_scs/misc/bunch_pattern_external/index writing output... [ 63%] autoapi/toolbox_scs/misc/index writing output... [ 65%] autoapi/toolbox_scs/misc/laser_utils/index writing output... [ 66%] autoapi/toolbox_scs/misc/undulator/index writing output... [ 68%] autoapi/toolbox_scs/mnemonics_machinery/index writing output... [ 69%] autoapi/toolbox_scs/routines/Reflectivity/index writing output... [ 71%] autoapi/toolbox_scs/routines/XAS/index writing output... [ 72%] autoapi/toolbox_scs/routines/boz/index writing output... [ 74%] autoapi/toolbox_scs/routines/index writing output... [ 75%] autoapi/toolbox_scs/routines/knife_edge/index writing output... [ 77%] autoapi/toolbox_scs/test/index writing output... [ 78%] autoapi/toolbox_scs/test/test_dssc_cls/index writing output... [ 80%] autoapi/toolbox_scs/test/test_hrixs/index writing output... [ 81%] autoapi/toolbox_scs/test/test_misc/index writing output... [ 83%] autoapi/toolbox_scs/test/test_top_level/index writing output... [ 84%] autoapi/toolbox_scs/test/test_utils/index writing output... [ 86%] autoapi/toolbox_scs/util/exceptions/index writing output... [ 87%] autoapi/toolbox_scs/util/index writing output... [ 89%] autoapi/toolbox_scs/util/pkg/index writing output... [ 90%] bunch_pattern_decoding writing output... [ 92%] changelog writing output... [ 93%] dssc/DSSCBinner writing output... [ 95%] howtos writing output... [ 96%] index writing output... [ 98%] load writing output... [100%] maintainers /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Analysis_of_Viking_spectrometer_data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Analysis_of_Viking_spectrometer_data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Analysis_of_Viking_spectrometer_data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Analysis_of_Viking_spectrometer_data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Analysis_of_Viking_spectrometer_data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Analysis_of_Viking_spectrometer_data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Analysis_of_Viking_spectrometer_data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Analysis_of_Viking_spectrometer_data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Analysis_of_Viking_spectrometer_data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Analysis_of_Viking_spectrometer_data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Analysis_of_Viking_spectrometer_data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Azimuthal integration of DSSC with pyFAI.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Azimuthal integration of DSSC with pyFAI.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Azimuthal integration of DSSC with pyFAI.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Azimuthal integration of DSSC with pyFAI.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Azimuthal integration of DSSC with pyFAI.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Azimuthal integration of DSSC with pyFAI.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Azimuthal integration of DSSC with pyFAI.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Azimuthal integration of DSSC with pyFAI.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Azimuthal integration of DSSC with pyFAI.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Azimuthal integration of DSSC with pyFAI.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.2 Binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC create geometry.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC create geometry.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC create geometry.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC create geometry.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC create geometry.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC create geometry.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC create geometry.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC create geometry.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC create geometry.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC create geometry.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC create geometry.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Dask DSSC module binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Dask DSSC module binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Dask DSSC module binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Dask DSSC module binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Dask DSSC module binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Dask DSSC module binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Dask DSSC module binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Dask DSSC module binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Dask DSSC module binning.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/HRIXS.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/HRIXS.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/HRIXS.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/HRIXS.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/HRIXS.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/HRIXS.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/HRIXS.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/HRIXS.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/HRIXS.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/How to extract peaks from digitizer traces.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Loading_data_in_memory.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Loading_data_in_memory.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Loading_data_in_memory.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Loading_data_in_memory.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Loading_data_in_memory.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Loading_data_in_memory.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Loading_data_in_memory.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Loading_data_in_memory.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Loading_data_in_memory.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Loading_data_in_memory.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Loading_data_in_memory.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/PES_spectra_extraction.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/PES_spectra_extraction.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/PES_spectra_extraction.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/PES_spectra_extraction.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/PES_spectra_extraction.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/PES_spectra_extraction.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/PES_spectra_extraction.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/PES_spectra_extraction.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/PES_spectra_extraction.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Transient reflectivity measurement.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Transient reflectivity measurement.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Transient reflectivity measurement.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Transient reflectivity measurement.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Transient reflectivity measurement.ipynb:: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/bunch_pattern_decoding.rst:4: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/bunch_pattern_decoding.rst:21: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/bunch_pattern_decoding.rst:27: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/bunch_pattern_decoding.rst:33: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/dssc/DSSCBinner.rst:15: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/dssc/DSSCBinner.rst:32: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/dssc/DSSCBinner.rst:38: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/dssc/DSSCBinner.rst:44: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/dssc/DSSCBinner.rst:49: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/dssc/DSSCBinner.rst:60: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/dssc/DSSCBinner.rst:68: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/dssc/DSSCBinner.rst:74: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/dssc/DSSCBinner.rst:85: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/dssc/DSSCBinner.rst:92: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/dssc/DSSCBinner.rst:105: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/dssc/DSSCBinner.rst:111: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/dssc/DSSCBinner.rst:117: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/dssc/DSSCBinner.rst:121: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/dssc/DSSCBinner.rst:135: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/dssc/DSSCBinner.rst:141: WARNING: Pygments lexer name 'ipython3' is not known /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/dssc/DSSCBinner.rst:152: WARNING: Pygments lexer name 'ipython3' is not known generating indices... genindex py-modindex done copying notebooks ... [ 5%] Analysis_of_Viking_spectrometer_data.ipynb copying notebooks ... [ 11%] Azimuthal integration of DSSC with pyFAI.ipynb copying notebooks ... [ 17%] BOZ analysis part I.a Correction determination.ipynb copying notebooks ... [ 23%] BOZ analysis part I.b Correction validation.ipynb copying notebooks ... [ 29%] BOZ analysis part II.1 Small data.ipynb copying notebooks ... [ 35%] BOZ analysis part II.2 Binning.ipynb copying notebooks ... [ 41%] DSSC create geometry.ipynb copying notebooks ... [ 47%] DSSC fine delay with SCS toolbox.ipynb copying notebooks ... [ 52%] DSSC scattering time-delay.ipynb copying notebooks ... [ 58%] Dask DSSC module binning.ipynb copying notebooks ... [ 64%] HRIXS.ipynb copying notebooks ... [ 70%] How to extract peaks from digitizer traces.ipynb copying notebooks ... [ 76%] Knife edge scan and fluence calculation.ipynb copying notebooks ... [ 82%] Loading_data_in_memory.ipynb copying notebooks ... [ 88%] OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb copying notebooks ... [ 94%] PES_spectra_extraction.ipynb copying notebooks ... [100%] Transient reflectivity measurement.ipynb highlighting module code... [ 2%] toolbox_scs.base highlighting module code... [ 5%] toolbox_scs.base.knife_edge highlighting module code... [ 8%] toolbox_scs.base.tests.test_knife_edge highlighting module code... [ 10%] toolbox_scs.constants highlighting module code... [ 13%] toolbox_scs.detectors highlighting module code... [ 16%] toolbox_scs.detectors.azimuthal_integrator highlighting module code... [ 18%] toolbox_scs.detectors.bam_detectors highlighting module code... [ 21%] toolbox_scs.detectors.digitizers highlighting module code... [ 24%] toolbox_scs.detectors.dssc highlighting module code... [ 27%] toolbox_scs.detectors.dssc_data highlighting module code... [ 29%] toolbox_scs.detectors.dssc_misc highlighting module code... [ 32%] toolbox_scs.detectors.dssc_plot highlighting module code... [ 35%] toolbox_scs.detectors.dssc_processing highlighting module code... [ 37%] toolbox_scs.detectors.fccd highlighting module code... [ 40%] toolbox_scs.detectors.hrixs highlighting module code... [ 43%] toolbox_scs.detectors.pes highlighting module code... [ 45%] toolbox_scs.detectors.viking highlighting module code... [ 48%] toolbox_scs.detectors.xgm highlighting module code... [ 51%] toolbox_scs.load highlighting module code... [ 54%] toolbox_scs.misc highlighting module code... [ 56%] toolbox_scs.misc.bunch_pattern highlighting module code... [ 59%] toolbox_scs.misc.bunch_pattern_external highlighting module code... [ 62%] toolbox_scs.misc.laser_utils highlighting module code... [ 64%] toolbox_scs.misc.undulator highlighting module code... [ 67%] toolbox_scs.mnemonics_machinery highlighting module code... [ 70%] toolbox_scs.routines highlighting module code... [ 72%] toolbox_scs.routines.Reflectivity highlighting module code... [ 75%] toolbox_scs.routines.XAS highlighting module code... [ 78%] toolbox_scs.routines.boz highlighting module code... [ 81%] toolbox_scs.routines.knife_edge highlighting module code... [ 83%] toolbox_scs.test.test_dssc_cls highlighting module code... [ 86%] toolbox_scs.test.test_hrixs highlighting module code... [ 89%] toolbox_scs.test.test_misc highlighting module code... [ 91%] toolbox_scs.test.test_top_level highlighting module code... [ 94%] toolbox_scs.test.test_utils highlighting module code... [ 97%] toolbox_scs.util.exceptions highlighting module code... [100%] toolbox_scs.util.pkg writing additional pages... search done copying images... [ 1%] _build/doctrees-readthedocs/nbsphinx/Analysis_of_Viking_spectrometer_data_9_0.png copying images... [ 3%] _build/doctrees-readthedocs/nbsphinx/Analysis_of_Viking_spectrometer_data_11_1.png copying images... [ 4%] _build/doctrees-readthedocs/nbsphinx/Analysis_of_Viking_spectrometer_data_15_1.png copying images... [ 6%] _build/doctrees-readthedocs/nbsphinx/Analysis_of_Viking_spectrometer_data_16_2.png copying images... [ 7%] _build/doctrees-readthedocs/nbsphinx/Analysis_of_Viking_spectrometer_data_16_3.png copying images... [ 9%] _build/doctrees-readthedocs/nbsphinx/Analysis_of_Viking_spectrometer_data_18_1.png copying images... [ 11%] _build/doctrees-readthedocs/nbsphinx/Azimuthal_integration_of_DSSC_with_pyFAI_9_1.png copying images... [ 12%] _build/doctrees-readthedocs/nbsphinx/Azimuthal_integration_of_DSSC_with_pyFAI_11_0.png copying images... [ 14%] _build/doctrees-readthedocs/nbsphinx/Azimuthal_integration_of_DSSC_with_pyFAI_13_1.png copying images... [ 15%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.a_Correction_determination_23_0.png copying images... [ 17%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.a_Correction_determination_29_0.png copying images... [ 19%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.a_Correction_determination_32_1.png copying images... [ 20%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.a_Correction_determination_36_1.png copying images... [ 22%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.a_Correction_determination_45_0.png copying images... [ 23%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.a_Correction_determination_54_1.png copying images... [ 25%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.a_Correction_determination_57_0.png copying images... [ 26%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.a_Correction_determination_60_0.png copying images... [ 28%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.b_Correction_validation_9_0.png copying images... [ 30%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.b_Correction_validation_14_0.png copying images... [ 31%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.b_Correction_validation_17_0.png copying images... [ 33%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.b_Correction_validation_23_0.png copying images... [ 34%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.b_Correction_validation_28_0.png copying images... [ 36%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.b_Correction_validation_31_0.png copying images... [ 38%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_I.b_Correction_validation_35_1.png copying images... [ 39%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_II.1_Small_data_9_0.png copying images... [ 41%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_II.1_Small_data_13_0.png copying images... [ 42%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_II.1_Small_data_20_0.png copying images... [ 44%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_II.1_Small_data_25_0.png copying images... [ 46%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_II.1_Small_data_29_1.png copying images... [ 47%] _build/doctrees-readthedocs/nbsphinx/BOZ_analysis_part_II.2_Binning_11_0.png copying images... [ 49%] _build/doctrees-readthedocs/nbsphinx/DSSC_fine_delay_with_SCS_toolbox_15_1.png copying images... [ 50%] _build/doctrees-readthedocs/nbsphinx/DSSC_fine_delay_with_SCS_toolbox_22_1.png copying images... [ 52%] _build/doctrees-readthedocs/nbsphinx/DSSC_scattering_time-delay_11_1.png copying images... [ 53%] _build/doctrees-readthedocs/nbsphinx/DSSC_scattering_time-delay_13_1.png copying images... [ 55%] _build/doctrees-readthedocs/nbsphinx/DSSC_scattering_time-delay_20_1.png copying images... [ 57%] _build/doctrees-readthedocs/nbsphinx/DSSC_scattering_time-delay_21_1.png copying images... [ 58%] _build/doctrees-readthedocs/nbsphinx/DSSC_scattering_time-delay_23_1.png copying images... [ 60%] _build/doctrees-readthedocs/nbsphinx/HRIXS_9_1.png copying images... [ 61%] _build/doctrees-readthedocs/nbsphinx/HRIXS_13_1.png copying images... [ 63%] _build/doctrees-readthedocs/nbsphinx/HRIXS_17_1.png copying images... [ 65%] _build/doctrees-readthedocs/nbsphinx/Loading_data_in_memory_20_1.png copying images... [ 66%] _build/doctrees-readthedocs/nbsphinx/OnlineGPU_BOZ_analysis_part_I.a_Correction_determination_S_K-egde_21_0.png copying images... [ 68%] _build/doctrees-readthedocs/nbsphinx/OnlineGPU_BOZ_analysis_part_I.a_Correction_determination_S_K-egde_27_0.png copying images... [ 69%] _build/doctrees-readthedocs/nbsphinx/OnlineGPU_BOZ_analysis_part_I.a_Correction_determination_S_K-egde_30_0.png copying images... [ 71%] _build/doctrees-readthedocs/nbsphinx/OnlineGPU_BOZ_analysis_part_I.a_Correction_determination_S_K-egde_37_0.png copying images... [ 73%] _build/doctrees-readthedocs/nbsphinx/OnlineGPU_BOZ_analysis_part_I.a_Correction_determination_S_K-egde_39_0.png copying images... [ 74%] _build/doctrees-readthedocs/nbsphinx/OnlineGPU_BOZ_analysis_part_I.a_Correction_determination_S_K-egde_41_0.png copying images... [ 76%] _build/doctrees-readthedocs/nbsphinx/OnlineGPU_BOZ_analysis_part_I.a_Correction_determination_S_K-egde_42_1.png copying images... [ 77%] _build/doctrees-readthedocs/nbsphinx/OnlineGPU_BOZ_analysis_part_I.a_Correction_determination_S_K-egde_53_0.png copying images... [ 79%] _build/doctrees-readthedocs/nbsphinx/OnlineGPU_BOZ_analysis_part_I.a_Correction_determination_S_K-egde_62_2.png copying images... [ 80%] _build/doctrees-readthedocs/nbsphinx/OnlineGPU_BOZ_analysis_part_I.a_Correction_determination_S_K-egde_65_1.png copying images... [ 82%] _build/doctrees-readthedocs/nbsphinx/OnlineGPU_BOZ_analysis_part_I.a_Correction_determination_S_K-egde_68_1.png copying images... [ 84%] _build/doctrees-readthedocs/nbsphinx/PES_spectra_extraction_5_1.png copying images... [ 85%] _build/doctrees-readthedocs/nbsphinx/PES_spectra_extraction_12_1.png copying images... [ 87%] _build/doctrees-readthedocs/nbsphinx/PES_spectra_extraction_15_1.png copying images... [ 88%] _build/doctrees-readthedocs/nbsphinx/PES_spectra_extraction_15_2.png copying images... [ 90%] _build/doctrees-readthedocs/nbsphinx/PES_spectra_extraction_18_0.png copying images... [ 92%] _build/doctrees-readthedocs/nbsphinx/PES_spectra_extraction_18_1.png copying images... [ 93%] _build/doctrees-readthedocs/nbsphinx/Transient_reflectivity_measurement_2_1.png copying images... [ 95%] _build/doctrees-readthedocs/nbsphinx/Transient_reflectivity_measurement_5_1.png copying images... [ 96%] _build/doctrees-readthedocs/nbsphinx/Transient_reflectivity_measurement_12_0.png copying images... [ 98%] sview.png copying images... [100%] metadata.png copying downloadable files... [ 50%] scripts/bin_dssc_module_job.sh copying downloadable files... [100%] scripts/boz_parameters_job.sh copying static files... done copying readthedocs static files... done copying searchtools... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 504 warnings. The HTML pages are in _build/html. [rtd-command-info] start-time: 2024-07-15T08:34:09.297220Z, end-time: 2024-07-15T08:34:36.354291Z, duration: 27, exit-code: 0 python /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/bin/sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v5.3.0 WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English). making output directory... done WARNING: html_static_path entry '_static' does not exist [AutoAPI] Ignoring /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/deprecated/dssc_single_module.py [AutoAPI] Ignoring /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/deprecated/dssc_bkp.py [AutoAPI] Reading files... [ 2%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/__init__.py [AutoAPI] Reading files... [ 4%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/mnemonics_machinery.py [AutoAPI] Reading files... [ 7%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/constants.py [AutoAPI] Reading files... [ 9%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/load.py [AutoAPI] Reading files... [ 12%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/misc/__init__.py [AutoAPI] Reading files... [ 14%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/misc/laser_utils.py [AutoAPI] Reading files... [ 17%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/misc/undulator.py [AutoAPI] Reading files... [ 19%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/misc/bunch_pattern_external.py [AutoAPI] Reading files... [ 21%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/misc/bunch_pattern.py [AutoAPI] Reading files... [ 24%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/util/__init__.py [AutoAPI] Reading files... [ 26%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/util/pkg.py [AutoAPI] Reading files... [ 29%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/util/exceptions.py [AutoAPI] Reading files... [ 31%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/base/__init__.py [AutoAPI] Reading files... [ 34%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/base/knife_edge.py [AutoAPI] Reading files... [ 36%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/base/tests/__init__.py [AutoAPI] Reading files... [ 39%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/base/tests/test_knife_edge.py [AutoAPI] Reading files... [ 41%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/viking.py [AutoAPI] Reading files... [ 43%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/dssc_processing.py [AutoAPI] Reading files... [ 46%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/__init__.py [AutoAPI] Reading files... [ 48%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/hrixs.py [AutoAPI] Reading files... [ 51%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/azimuthal_integrator.py [AutoAPI] Reading files... [ 53%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/dssc_data.py [AutoAPI] Reading files... [ 56%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/pes.py [AutoAPI] Reading files... [ 58%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/dssc_plot.py [AutoAPI] Reading files... [ 60%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/fccd.py [AutoAPI] Reading files... [ 63%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/bam_detectors.py [AutoAPI] Reading files... [ 65%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/digitizers.py [AutoAPI] Reading files... [ 68%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/dssc_misc.py [AutoAPI] Reading files... [ 70%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/dssc.py [AutoAPI] Reading files... [ 73%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/xgm.py [AutoAPI] Reading files... [ 75%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/__init__.py [AutoAPI] Reading files... [ 78%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/test_hrixs.py [AutoAPI] Reading files... [ 80%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/test_dssc_cls.py [AutoAPI] Reading files... [ 82%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/test_top_level.py [AutoAPI] Reading files... [ 85%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/test_misc.py [AutoAPI] Reading files... [ 87%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/test_utils.py [AutoAPI] Reading files... [ 90%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/routines/__init__.py [AutoAPI] Reading files... [ 92%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/routines/XAS.py [AutoAPI] Reading files... [ 95%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/routines/Reflectivity.py [AutoAPI] Reading files... [ 97%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/routines/knife_edge.py [AutoAPI] Reading files... [100%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/routines/boz.py WARNING: Cannot resolve import of unknown module toolbox_scs.util.data_access in toolbox_scs.test.test_utils [AutoAPI] Mapping Data... [ 2%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/__init__.py [AutoAPI] Mapping Data... [ 4%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/mnemonics_machinery.py [AutoAPI] Mapping Data... [ 7%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/constants.py [AutoAPI] Mapping Data... [ 9%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/load.py [AutoAPI] Mapping Data... [ 12%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/misc/__init__.py [AutoAPI] Mapping Data... [ 14%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/misc/laser_utils.py [AutoAPI] Mapping Data... [ 17%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/misc/undulator.py [AutoAPI] Mapping Data... [ 19%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/misc/bunch_pattern_external.py [AutoAPI] Mapping Data... [ 21%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/misc/bunch_pattern.py [AutoAPI] Mapping Data... [ 24%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/util/__init__.py [AutoAPI] Mapping Data... [ 26%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/util/pkg.py [AutoAPI] Mapping Data... [ 29%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/util/exceptions.py [AutoAPI] Mapping Data... [ 31%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/base/__init__.py [AutoAPI] Mapping Data... [ 34%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/base/knife_edge.py [AutoAPI] Mapping Data... [ 36%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/base/tests/__init__.py [AutoAPI] Mapping Data... [ 39%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/base/tests/test_knife_edge.py [AutoAPI] Mapping Data... [ 41%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/viking.py [AutoAPI] Mapping Data... [ 43%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/dssc_processing.py [AutoAPI] Mapping Data... [ 46%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/__init__.py [AutoAPI] Mapping Data... [ 48%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/hrixs.py [AutoAPI] Mapping Data... [ 51%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/azimuthal_integrator.py [AutoAPI] Mapping Data... [ 53%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/dssc_data.py [AutoAPI] Mapping Data... [ 56%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/pes.py [AutoAPI] Mapping Data... [ 58%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/dssc_plot.py [AutoAPI] Mapping Data... [ 60%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/fccd.py [AutoAPI] Mapping Data... [ 63%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/bam_detectors.py [AutoAPI] Mapping Data... [ 65%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/digitizers.py [AutoAPI] Mapping Data... [ 68%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/dssc_misc.py [AutoAPI] Mapping Data... [ 70%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/dssc.py [AutoAPI] Mapping Data... [ 73%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/detectors/xgm.py [AutoAPI] Mapping Data... [ 75%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/__init__.py [AutoAPI] Mapping Data... [ 78%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/test_hrixs.py [AutoAPI] Mapping Data... [ 80%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/test_dssc_cls.py [AutoAPI] Mapping Data... [ 82%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/test_top_level.py [AutoAPI] Mapping Data... [ 85%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/test_misc.py [AutoAPI] Mapping Data... [ 87%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/test/test_utils.py [AutoAPI] Mapping Data... [ 90%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/routines/__init__.py [AutoAPI] Mapping Data... [ 92%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/routines/XAS.py [AutoAPI] Mapping Data... [ 95%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/routines/Reflectivity.py [AutoAPI] Mapping Data... [ 97%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/routines/knife_edge.py [AutoAPI] Mapping Data... [100%] /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/src/toolbox_scs/routines/boz.py [AutoAPI] Rendering Data... [ 2%] toolbox_scs [AutoAPI] Rendering Data... [ 4%] toolbox_scs.mnemonics_machinery [AutoAPI] Rendering Data... [ 7%] toolbox_scs.constants [AutoAPI] Rendering Data... [ 9%] toolbox_scs.load [AutoAPI] Rendering Data... [ 12%] toolbox_scs.misc [AutoAPI] Rendering Data... [ 14%] toolbox_scs.misc.laser_utils [AutoAPI] Rendering Data... [ 17%] toolbox_scs.misc.undulator [AutoAPI] Rendering Data... [ 19%] toolbox_scs.misc.bunch_pattern_external [AutoAPI] Rendering Data... [ 21%] toolbox_scs.misc.bunch_pattern [AutoAPI] Rendering Data... [ 24%] toolbox_scs.util [AutoAPI] Rendering Data... [ 26%] toolbox_scs.util.pkg [AutoAPI] Rendering Data... [ 29%] toolbox_scs.util.exceptions [AutoAPI] Rendering Data... [ 31%] toolbox_scs.base [AutoAPI] Rendering Data... [ 34%] toolbox_scs.base.knife_edge [AutoAPI] Rendering Data... [ 36%] toolbox_scs.base.tests [AutoAPI] Rendering Data... [ 39%] toolbox_scs.base.tests.test_knife_edge [AutoAPI] Rendering Data... [ 41%] toolbox_scs.detectors.viking [AutoAPI] Rendering Data... [ 43%] toolbox_scs.detectors.dssc_processing [AutoAPI] Rendering Data... [ 46%] toolbox_scs.detectors [AutoAPI] Rendering Data... [ 48%] toolbox_scs.detectors.hrixs [AutoAPI] Rendering Data... [ 51%] toolbox_scs.detectors.azimuthal_integrator [AutoAPI] Rendering Data... [ 53%] toolbox_scs.detectors.dssc_data [AutoAPI] Rendering Data... [ 56%] toolbox_scs.detectors.pes [AutoAPI] Rendering Data... [ 58%] toolbox_scs.detectors.dssc_plot [AutoAPI] Rendering Data... [ 60%] toolbox_scs.detectors.fccd [AutoAPI] Rendering Data... [ 63%] toolbox_scs.detectors.bam_detectors [AutoAPI] Rendering Data... [ 65%] toolbox_scs.detectors.digitizers [AutoAPI] Rendering Data... [ 68%] toolbox_scs.detectors.dssc_misc [AutoAPI] Rendering Data... [ 70%] toolbox_scs.detectors.dssc [AutoAPI] Rendering Data... [ 73%] toolbox_scs.detectors.xgm [AutoAPI] Rendering Data... [ 75%] toolbox_scs.test [AutoAPI] Rendering Data... [ 78%] toolbox_scs.test.test_hrixs [AutoAPI] Rendering Data... [ 80%] toolbox_scs.test.test_dssc_cls [AutoAPI] Rendering Data... [ 82%] toolbox_scs.test.test_top_level [AutoAPI] Rendering Data... [ 85%] toolbox_scs.test.test_misc [AutoAPI] Rendering Data... [ 87%] toolbox_scs.test.test_utils [AutoAPI] Rendering Data... [ 90%] toolbox_scs.routines [AutoAPI] Rendering Data... [ 92%] toolbox_scs.routines.XAS [AutoAPI] Rendering Data... [ 95%] toolbox_scs.routines.Reflectivity [AutoAPI] Rendering Data... [ 97%] toolbox_scs.routines.knife_edge [AutoAPI] Rendering Data... [100%] toolbox_scs.routines.boz [autosummary] generating autosummary for: Analysis_of_Viking_spectrometer_data.ipynb, Azimuthal integration of DSSC with pyFAI.ipynb, BOZ analysis part I.a Correction determination.ipynb, BOZ analysis part I.b Correction validation.ipynb, BOZ analysis part II.1 Small data.ipynb, BOZ analysis part II.2 Binning.ipynb, DSSC create geometry.ipynb, DSSC fine delay with SCS toolbox.ipynb, DSSC scattering time-delay.ipynb, Dask DSSC module binning.ipynb, ..., OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb, PES_spectra_extraction.ipynb, Transient reflectivity measurement.ipynb, bunch_pattern_decoding.rst, changelog.rst, dssc/DSSCBinner.rst, howtos.rst, index.rst, load.rst, maintainers.rst building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: [new config] 66 added, 0 changed, 0 removed reading sources... [ 1%] Analysis_of_Viking_spectrometer_data reading sources... [ 3%] Azimuthal integration of DSSC with pyFAI reading sources... [ 4%] BOZ analysis part I.a Correction determination reading sources... [ 6%] BOZ analysis part I.b Correction validation reading sources... [ 7%] BOZ analysis part II.1 Small data reading sources... [ 9%] BOZ analysis part II.2 Binning reading sources... [ 10%] DSSC create geometry reading sources... [ 12%] DSSC fine delay with SCS toolbox reading sources... [ 13%] DSSC scattering time-delay reading sources... [ 15%] Dask DSSC module binning reading sources... [ 16%] HRIXS reading sources... [ 18%] How to extract peaks from digitizer traces reading sources... [ 19%] Knife edge scan and fluence calculation reading sources... [ 21%] Loading_data_in_memory reading sources... [ 22%] OnlineGPU BOZ analysis part I.a Correction determination S K-egde reading sources... [ 24%] PES_spectra_extraction reading sources... [ 25%] Transient reflectivity measurement reading sources... [ 27%] autoapi/index reading sources... [ 28%] autoapi/toolbox_scs/base/index reading sources... [ 30%] autoapi/toolbox_scs/base/knife_edge/index reading sources... [ 31%] autoapi/toolbox_scs/base/tests/index reading sources... [ 33%] autoapi/toolbox_scs/base/tests/test_knife_edge/index reading sources... [ 34%] autoapi/toolbox_scs/constants/index reading sources... [ 36%] autoapi/toolbox_scs/detectors/azimuthal_integrator/index reading sources... [ 37%] autoapi/toolbox_scs/detectors/bam_detectors/index reading sources... [ 39%] autoapi/toolbox_scs/detectors/digitizers/index reading sources... [ 40%] autoapi/toolbox_scs/detectors/dssc/index reading sources... [ 42%] autoapi/toolbox_scs/detectors/dssc_data/index reading sources... [ 43%] autoapi/toolbox_scs/detectors/dssc_misc/index reading sources... [ 45%] autoapi/toolbox_scs/detectors/dssc_plot/index reading sources... [ 46%] autoapi/toolbox_scs/detectors/dssc_processing/index reading sources... [ 48%] autoapi/toolbox_scs/detectors/fccd/index reading sources... [ 50%] autoapi/toolbox_scs/detectors/hrixs/index reading sources... [ 51%] autoapi/toolbox_scs/detectors/index reading sources... [ 53%] autoapi/toolbox_scs/detectors/pes/index reading sources... [ 54%] autoapi/toolbox_scs/detectors/viking/index reading sources... [ 56%] autoapi/toolbox_scs/detectors/xgm/index reading sources... [ 57%] autoapi/toolbox_scs/index reading sources... [ 59%] autoapi/toolbox_scs/load/index reading sources... [ 60%] autoapi/toolbox_scs/misc/bunch_pattern/index reading sources... [ 62%] autoapi/toolbox_scs/misc/bunch_pattern_external/index reading sources... [ 63%] autoapi/toolbox_scs/misc/index reading sources... [ 65%] autoapi/toolbox_scs/misc/laser_utils/index reading sources... [ 66%] autoapi/toolbox_scs/misc/undulator/index reading sources... [ 68%] autoapi/toolbox_scs/mnemonics_machinery/index reading sources... [ 69%] autoapi/toolbox_scs/routines/Reflectivity/index reading sources... [ 71%] autoapi/toolbox_scs/routines/XAS/index reading sources... [ 72%] autoapi/toolbox_scs/routines/boz/index reading sources... [ 74%] autoapi/toolbox_scs/routines/index reading sources... [ 75%] autoapi/toolbox_scs/routines/knife_edge/index reading sources... [ 77%] autoapi/toolbox_scs/test/index reading sources... [ 78%] autoapi/toolbox_scs/test/test_dssc_cls/index reading sources... [ 80%] autoapi/toolbox_scs/test/test_hrixs/index reading sources... [ 81%] autoapi/toolbox_scs/test/test_misc/index reading sources... [ 83%] autoapi/toolbox_scs/test/test_top_level/index reading sources... [ 84%] autoapi/toolbox_scs/test/test_utils/index reading sources... [ 86%] autoapi/toolbox_scs/util/exceptions/index reading sources... [ 87%] autoapi/toolbox_scs/util/index reading sources... [ 89%] autoapi/toolbox_scs/util/pkg/index reading sources... [ 90%] bunch_pattern_decoding reading sources... [ 92%] changelog reading sources... [ 93%] dssc/DSSCBinner reading sources... [ 95%] howtos reading sources... [ 96%] index [AutoAPI] Adding AutoAPI TOCTree [autoapi/index] to index.rst reading sources... [ 98%] load reading sources... [100%] maintainers /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/envs/latest/lib/python3.7/site-packages/nbsphinx/__init__.py:1058: RuntimeWarning: You are using an unsupported version of pandoc (1.19.2.4). Your version must be at least (2.14.2) but less than (4.0.0). Refer to https://pandoc.org/installing.html. Continuing with doubts... nbconvert.utils.pandoc.check_pandoc_version() /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:3433: CRITICAL: Title level inconsistent: Peak fluence calculation using knife-edge scans: ------------------------------------------------ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:3451: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:3451: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:3506: CRITICAL: Title level inconsistent: Load scanning motor and laser photodiode data ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:3572: CRITICAL: Title level inconsistent: Check diode traces and region of integration for peak calculations ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:5807: CRITICAL: Title level inconsistent: Plot intensity vs. knife-edge positions, fit with erfc function ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:7990: CRITICAL: Title level inconsistent: OL power measurement ^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:8016: CRITICAL: Title level inconsistent: Fluence vs. laser power ^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:9096: CRITICAL: Title level inconsistent: Load runs with horizontal and vertical scans, normalize the transmitted signal by XGM ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:9676: CRITICAL: Title level inconsistent: Fit scan to erfc function and plot ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:11863: CRITICAL: Title level inconsistent: Load XGM data ^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb:12357: CRITICAL: Title level inconsistent: Calibrate XGM fast data using photon flux and plot ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/base/knife_edge/index.rst:4: WARNING: duplicate object description of toolbox_scs.base.knife_edge, other instance in autoapi/toolbox_scs/base/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/dssc_misc/index.rst:71: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/dssc_misc/index.rst:30: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/fccd/index.rst:6: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/hrixs/index.rst:7: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/index.rst:642: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/index.rst:30: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/detectors/index.rst:7: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:717: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:30: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Inline interpreted text or phrase reference start-string without end-string. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1578: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1595: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:29: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1716: WARNING: duplicate object description of toolbox_scs.__all__, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1727: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:8: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1812: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1869: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1880: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1893: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2007: WARNING: duplicate object description of toolbox_scs.__all__, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2018: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2025: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2041: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2120: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2196: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2267: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:8: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2287: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2398: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2421: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2470: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2526: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2541: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2544: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2547: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2566: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:2687: WARNING: duplicate object description of toolbox_scs.__all__, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/index.rst:1636: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:4: WARNING: duplicate object description of toolbox_scs.load, other instance in autoapi/toolbox_scs/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:49: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:66: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:29: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:139: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/load/index.rst:: ERROR: Unknown target name: "numpy.s". /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:85: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:8: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:126: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/bunch_pattern/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:61: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:8: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:146: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:203: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:214: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/index.rst:227: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/laser_utils/index.rst:28: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/laser_utils/index.rst:41: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/misc/laser_utils/index.rst:55: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/XAS/index.rst:40: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/XAS/index.rst:7: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/XAS/index.rst:47: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/XAS/index.rst:63: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:135: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:211: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:282: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:8: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:302: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:413: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:436: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:485: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:541: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:556: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:559: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:562: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/boz/index.rst:581: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:88: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:7: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:95: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:111: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:190: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:266: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:337: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:8: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:7: WARNING: Definition list ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:357: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:468: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:491: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:540: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:10: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:596: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:611: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:9: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:614: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:617: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/index.rst:636: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/routines/knife_edge/index.rst:4: WARNING: duplicate object description of toolbox_scs.routines.knife_edge, other instance in autoapi/toolbox_scs/routines/index, use :noindex: for one of them /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_dssc_cls/index.rst:89: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_dssc_cls/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_hrixs/index.rst:47: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_hrixs/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_misc/index.rst:82: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_misc/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_top_level/index.rst:75: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_top_level/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_utils/index.rst:73: ERROR: Unexpected indentation. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/autoapi/toolbox_scs/test/test_utils/index.rst:27: WARNING: Block quote ends without a blank line; unexpected unindent. /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/index.rst:128: CRITICAL: Title level inconsistent: Contribute ~~~~~~~~~~ WARNING: nbsphinx_widgets_path not given and ipywidgets module unavailable looking for now-outdated files... none found pickling environment... done checking consistency... /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Analysis_of_Viking_spectrometer_data.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Azimuthal integration of DSSC with pyFAI.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.a Correction determination.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part I.b Correction validation.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.1 Small data.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/BOZ analysis part II.2 Binning.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC create geometry.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC fine delay with SCS toolbox.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/DSSC scattering time-delay.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Dask DSSC module binning.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/HRIXS.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/How to extract peaks from digitizer traces.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Knife edge scan and fluence calculation.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Loading_data_in_memory.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/OnlineGPU BOZ analysis part I.a Correction determination S K-egde.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/PES_spectra_extraction.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/Transient reflectivity measurement.ipynb: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/bunch_pattern_decoding.rst: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/dssc/DSSCBinner.rst: WARNING: document isn't included in any toctree /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/load.rst: WARNING: document isn't included in any toctree done processing SCSToolbox.tex... index howtos maintainers changelog autoapi/index autoapi/toolbox_scs/index autoapi/toolbox_scs/base/index autoapi/toolbox_scs/base/tests/index autoapi/toolbox_scs/base/tests/test_knife_edge/index autoapi/toolbox_scs/base/knife_edge/index autoapi/toolbox_scs/detectors/index autoapi/toolbox_scs/detectors/azimuthal_integrator/index autoapi/toolbox_scs/detectors/bam_detectors/index autoapi/toolbox_scs/detectors/digitizers/index autoapi/toolbox_scs/detectors/dssc/index autoapi/toolbox_scs/detectors/dssc_data/index autoapi/toolbox_scs/detectors/dssc_misc/index autoapi/toolbox_scs/detectors/dssc_plot/index autoapi/toolbox_scs/detectors/dssc_processing/index autoapi/toolbox_scs/detectors/fccd/index autoapi/toolbox_scs/detectors/hrixs/index autoapi/toolbox_scs/detectors/pes/index autoapi/toolbox_scs/detectors/viking/index autoapi/toolbox_scs/detectors/xgm/index autoapi/toolbox_scs/misc/index autoapi/toolbox_scs/misc/bunch_pattern/index autoapi/toolbox_scs/misc/bunch_pattern_external/index autoapi/toolbox_scs/misc/laser_utils/index autoapi/toolbox_scs/misc/undulator/index autoapi/toolbox_scs/routines/index autoapi/toolbox_scs/routines/Reflectivity/index autoapi/toolbox_scs/routines/XAS/index autoapi/toolbox_scs/routines/boz/index autoapi/toolbox_scs/routines/knife_edge/index autoapi/toolbox_scs/test/index autoapi/toolbox_scs/test/test_dssc_cls/index autoapi/toolbox_scs/test/test_hrixs/index autoapi/toolbox_scs/test/test_misc/index autoapi/toolbox_scs/test/test_top_level/index autoapi/toolbox_scs/test/test_utils/index autoapi/toolbox_scs/util/index autoapi/toolbox_scs/util/exceptions/index autoapi/toolbox_scs/util/pkg/index autoapi/toolbox_scs/constants/index autoapi/toolbox_scs/load/index autoapi/toolbox_scs/mnemonics_machinery/index resolving references... done writing... done copying images... [ 50%] metadata.png copying images... [100%] sview.png copying TeX support files... copying TeX support files... done build succeeded, 174 warnings. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). [rtd-command-info] start-time: 2024-07-15T08:34:36.734643Z, end-time: 2024-07-15T08:34:36.791781Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2024-07-15T08:34:36.891771Z, end-time: 2024-07-15T08:34:41.842456Z, duration: 4, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=scs-toolbox -interaction=nonstopmode Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 10) line 4, chunk 1. Subroutine makeglo redefined at (eval 11) line 7, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 1, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 2, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 3, chunk 1. Use of uninitialized value $ENV{"LATEXOPTS"} in concatenation (.) or string at (eval 11) line 4, chunk 1. Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41. File::Glob::glob() will disappear in perl 5.30. Use File::Glob::bsd_glob() instead. at /usr/bin/latexmk line 7482. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="scs-toolbox" "SCSToolbox.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./SCSToolbox.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (./sphinxlatexgraphics.sty) (./sphinxpackageboxes.sty) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty)) (./sphinxlatexnumfig.sty (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty)) (./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (./nbsphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file scs-toolbox.idx (./scs-toolbox.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] [1] [2] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [1] [2] Chapter 2. [3 <./metadata.png>] [4] Chapter 3. LaTeX Warning: Hyper reference `howtos:how-to-s' on page 5 undefined on input l ine 211. (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) [5] [6] [7] [8] [9] [10] [11 <./sview.png>] [12] [13] [14] [15] [16] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge.test_range_mask' on page 17 undefi ned on input line 1435. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge.test_prepare_arrays_nans' on page 17 undefined on input line 1435. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge.test_prepare_arrays_size' on page 17 undefined on input line 1435. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge.test_prepare_arrays_range' on page 17 undefined on input line 1435. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge.test_knife_edge_base' on page 17 u ndefined on input line 1435. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge._with_values' on page 17 undefined on input line 1435. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge.test_range_mask' on page 17 undefi ned on input line 1435. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge.test_prepare_arrays_nans' on page 17 undefined on input line 1435. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge.test_prepare_arrays_size' on page 17 undefined on input line 1435. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge.test_prepare_arrays_range' on page 17 undefined on input line 1435. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge.test_knife_edge_base' on page 17 u ndefined on input line 1435. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/tests/test_knife_edge/ index:toolbox_scs.base.tests.test_knife_edge._with_values' on page 17 undefined on input line 1435. [17] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/knife_edge/index:toolb ox_scs.base.knife_edge.knife_edge' on page 18 undefined on input line 1529. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/knife_edge/index:toolb ox_scs.base.knife_edge.knife_edge_base' on page 18 undefined on input line 1529 . LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/knife_edge/index:toolb ox_scs.base.knife_edge.knife_edge' on page 18 undefined on input line 1529. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/knife_edge/index:toolb ox_scs.base.knife_edge.knife_edge_base' on page 18 undefined on input line 1529 . [18] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/knife_edge/index:modul e-toolbox_scs.base.knife_edge' on page 19 undefined on input line 1668. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/index:toolbox_scs.base .knife_edge_base' on page 19 undefined on input line 1668. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/knife_edge/index:modul e-toolbox_scs.base.knife_edge' on page 19 undefined on input line 1668. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/index:toolbox_scs.base .knife_edge_base' on page 19 undefined on input line 1668. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/index:toolbox_scs.base .__all__' on page 19 undefined on input line 1690. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/base/index:toolbox_scs.base .__all__' on page 19 undefined on input line 1690. [19] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/azimuthal_integra tor/index:toolbox_scs.detectors.azimuthal_integrator.AzimuthalIntegrator' on pa ge 20 undefined on input line 1851. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/azimuthal_integra tor/index:toolbox_scs.detectors.azimuthal_integrator.AzimuthalIntegratorDSSC' o n page 20 undefined on input line 1851. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/azimuthal_integra tor/index:toolbox_scs.detectors.azimuthal_integrator.AzimuthalIntegrator' on pa ge 20 undefined on input line 1851. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/azimuthal_integra tor/index:toolbox_scs.detectors.azimuthal_integrator.AzimuthalIntegratorDSSC' o n page 20 undefined on input line 1851. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/azimuthal_integra tor/index:toolbox_scs.detectors.azimuthal_integrator.AzimuthalIntegrator' on pa ge 20 undefined on input line 1949. [20] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/bam_detectors/ind ex:toolbox_scs.detectors.bam_detectors.get_bam' on page 21 undefined on input l ine 2009. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/bam_detectors/ind ex:toolbox_scs.detectors.bam_detectors.get_bam_params' on page 21 undefined on input line 2009. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/bam_detectors/ind ex:toolbox_scs.detectors.bam_detectors.get_bam' on page 21 undefined on input l ine 2009. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/bam_detectors/ind ex:toolbox_scs.detectors.bam_detectors.get_bam_params' on page 21 undefined on input line 2009. [21] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.get_peaks' on page 22 undefined on input line 2192. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.get_dig_avg_trace' on page 22 undefined on inp ut line 2192. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.check_peak_params' on page 22 undefined on inp ut line 2192. Underfull \hbox (badness 10000) in paragraph at lines 2192--2192 []|\T1/txtt/m/sl/10 check_peak_params\T1/qtm/m/n/10 (run, mnemonic[, raw_trace, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.get_tim_peaks' on page 22 undefined on input l ine 2192. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.get_laser_peaks' on page 22 undefined on input line 2192. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.get_digitizer_peaks' on page 22 undefined on i nput line 2192. Underfull \hbox (badness 10000) in paragraph at lines 2192--2192 []|\T1/txtt/m/sl/10 get_digitizer_peaks\T1/qtm/m/n/10 (run[, mnemon-ics, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.digitizer_signal_description' on page 22 undef ined on input line 2192. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.get_peaks' on page 22 undefined on input line 2192. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.get_dig_avg_trace' on page 22 undefined on inp ut line 2192. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.check_peak_params' on page 22 undefined on inp ut line 2192. Underfull \hbox (badness 10000) in paragraph at lines 2192--2192 []|\T1/txtt/m/sl/10 check_peak_params\T1/qtm/m/n/10 (run, mnemonic[, raw_trace, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.get_tim_peaks' on page 22 undefined on input l ine 2192. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.get_laser_peaks' on page 22 undefined on input line 2192. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.get_digitizer_peaks' on page 22 undefined on i nput line 2192. Underfull \hbox (badness 10000) in paragraph at lines 2192--2192 []|\T1/txtt/m/sl/10 get_digitizer_peaks\T1/qtm/m/n/10 (run[, mnemon-ics, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/digitizers/index: toolbox_scs.detectors.digitizers.digitizer_signal_description' on page 22 undef ined on input line 2192. [22] [23] [24] [25] [26] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc/index:toolbo x_scs.detectors.dssc.DSSCBinner' on page 27 undefined on input line 2691. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc/index:toolbo x_scs.detectors.dssc.DSSCFormatter' on page 27 undefined on input line 2691. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc/index:toolbo x_scs.detectors.dssc.DSSCBinner' on page 27 undefined on input line 2691. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc/index:toolbo x_scs.detectors.dssc.DSSCFormatter' on page 27 undefined on input line 2691. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxValueError' on page 27 undefined on input line 27 33. [27] [28] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_data/index:t oolbox_scs.detectors.dssc_data.save_xarray' on page 29 undefined on input line 3055. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_data/index:t oolbox_scs.detectors.dssc_data.save_attributes_h5' on page 29 undefined on inpu t line 3055. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_data/index:t oolbox_scs.detectors.dssc_data.load_xarray' on page 29 undefined on input line 3055. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_data/index:t oolbox_scs.detectors.dssc_data.get_data_formatted' on page 29 undefined on inpu t line 3055. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_data/index:t oolbox_scs.detectors.dssc_data.save_xarray' on page 29 undefined on input line 3055. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_data/index:t oolbox_scs.detectors.dssc_data.save_attributes_h5' on page 29 undefined on inpu t line 3055. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_data/index:t oolbox_scs.detectors.dssc_data.load_xarray' on page 29 undefined on input line 3055. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_data/index:t oolbox_scs.detectors.dssc_data.get_data_formatted' on page 29 undefined on inpu t line 3055. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxFileError' on page 29 undefined on input line 308 5. [29] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_misc/index:t oolbox_scs.detectors.dssc_misc.load_dssc_info' on page 30 undefined on input li ne 3247. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_misc/index:t oolbox_scs.detectors.dssc_misc.create_dssc_bins' on page 30 undefined on input line 3247. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_misc/index:t oolbox_scs.detectors.dssc_misc.get_xgm_formatted' on page 30 undefined on input line 3247. Underfull \hbox (badness 10000) in paragraph at lines 3247--3247 []|\T1/txtt/m/sl/10 get_xgm_formatted\T1/qtm/m/n/10 (run_obj, xgm_name, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_misc/index:t oolbox_scs.detectors.dssc_misc.quickmask_DSSC_ASIC' on page 30 undefined on inp ut line 3247. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_misc/index:t oolbox_scs.detectors.dssc_misc.load_mask' on page 30 undefined on input line 32 47. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_misc/index:t oolbox_scs.detectors.dssc_misc.load_dssc_info' on page 30 undefined on input li ne 3247. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_misc/index:t oolbox_scs.detectors.dssc_misc.create_dssc_bins' on page 30 undefined on input line 3247. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_misc/index:t oolbox_scs.detectors.dssc_misc.get_xgm_formatted' on page 30 undefined on input line 3247. Underfull \hbox (badness 10000) in paragraph at lines 3247--3247 []|\T1/txtt/m/sl/10 get_xgm_formatted\T1/qtm/m/n/10 (run_obj, xgm_name, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_misc/index:t oolbox_scs.detectors.dssc_misc.quickmask_DSSC_ASIC' on page 30 undefined on inp ut line 3247. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_misc/index:t oolbox_scs.detectors.dssc_misc.load_mask' on page 30 undefined on input line 32 47. [30] [31] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_plot/index:t oolbox_scs.detectors.dssc_plot.plot_xgm_threshold' on page 32 undefined on inpu t line 3498. Underfull \hbox (badness 5817) in paragraph at lines 3498--3498 []|\T1/txtt/m/sl/10 plot_xgm_threshold\T1/qtm/m/n/10 (xgm[, xgm_min, xgm_max, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_plot/index:t oolbox_scs.detectors.dssc_plot.plot_binner' on page 32 undefined on input line 3498. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_plot/index:t oolbox_scs.detectors.dssc_plot.plot_binner_hist' on page 32 undefined on input line 3498. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_plot/index:t oolbox_scs.detectors.dssc_plot.plot_hist_processed' on page 32 undefined on inp ut line 3498. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_plot/index:t oolbox_scs.detectors.dssc_plot.plot_xgm_threshold' on page 32 undefined on inpu t line 3498. Underfull \hbox (badness 5817) in paragraph at lines 3498--3498 []|\T1/txtt/m/sl/10 plot_xgm_threshold\T1/qtm/m/n/10 (xgm[, xgm_min, xgm_max, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_plot/index:t oolbox_scs.detectors.dssc_plot.plot_binner' on page 32 undefined on input line 3498. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_plot/index:t oolbox_scs.detectors.dssc_plot.plot_binner_hist' on page 32 undefined on input line 3498. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_plot/index:t oolbox_scs.detectors.dssc_plot.plot_hist_processed' on page 32 undefined on inp ut line 3498. [32] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_processing/i ndex:toolbox_scs.detectors.dssc_processing.process_dssc_data' on page 33 undefi ned on input line 3570. Underfull \hbox (badness 10000) in paragraph at lines 3570--3570 []|\T1/txtt/m/sl/10 process_dssc_data\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/dssc_processing/i ndex:toolbox_scs.detectors.dssc_processing.process_dssc_data' on page 33 undefi ned on input line 3570. Underfull \hbox (badness 10000) in paragraph at lines 3570--3570 []|\T1/txtt/m/sl/10 process_dssc_data\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, [33] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/fccd/index:toolbo x_scs.detectors.fccd.FastCCD' on page 34 undefined on input line 3681. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/fccd/index:toolbo x_scs.detectors.fccd.FastCCD' on page 34 undefined on input line 3681. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/fccd/index:toolbo x_scs.detectors.fccd.process_one_module' on page 34 undefined on input line 370 3. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/fccd/index:toolbo x_scs.detectors.fccd.process_one_module' on page 34 undefined on input line 370 3. [34] [35] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/hrixs/index:toolb ox_scs.detectors.hrixs.hRIXS' on page 36 undefined on input line 4038. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/hrixs/index:toolb ox_scs.detectors.hrixs.MaranaX' on page 36 undefined on input line 4038. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/hrixs/index:toolb ox_scs.detectors.hrixs.hRIXS' on page 36 undefined on input line 4038. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/hrixs/index:toolb ox_scs.detectors.hrixs.MaranaX' on page 36 undefined on input line 4038. [36] [37] [38] [39] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/hrixs/index:toolb ox_scs.detectors.hrixs.hRIXS' on page 40 undefined on input line 4613. [40] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/pes/index:toolbox _scs.detectors.pes.get_pes_tof' on page 41 undefined on input line 4768. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/pes/index:toolbox _scs.detectors.pes.get_pes_params' on page 41 undefined on input line 4768. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/pes/index:toolbox _scs.detectors.pes.get_pes_tof' on page 41 undefined on input line 4768. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/pes/index:toolbox _scs.detectors.pes.get_pes_params' on page 41 undefined on input line 4768. [41] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/viking/index:tool box_scs.detectors.viking.Viking' on page 42 undefined on input line 4914. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/viking/index:tool box_scs.detectors.viking.Viking' on page 42 undefined on input line 4914. [42] [43] [44] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/xgm/index:toolbox _scs.detectors.xgm.get_xgm' on page 45 undefined on input line 5456. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/xgm/index:toolbox _scs.detectors.xgm.calibrate_xgm' on page 45 undefined on input line 5456. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/xgm/index:toolbox _scs.detectors.xgm.get_xgm' on page 45 undefined on input line 5456. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/xgm/index:toolbox _scs.detectors.xgm.calibrate_xgm' on page 45 undefined on input line 5456. [45] [46] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.AzimuthalIntegrator' on page 47 undefined on input line 5634. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.AzimuthalIntegratorDSSC' on page 47 undefined on input line 5634. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.DSSCBinner' on page 47 undefined on input line 5634. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.DSSCFormatter' on page 47 undefined on input line 5634. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.hRIXS' on page 47 undefined on input line 5634. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.MaranaX' on page 47 undefined on input line 5634. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.Viking' on page 47 undefined on input line 5634. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.AzimuthalIntegrator' on page 47 undefined on input line 5634. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.AzimuthalIntegratorDSSC' on page 47 undefined on input line 5634. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.DSSCBinner' on page 47 undefined on input line 5634. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.DSSCFormatter' on page 47 undefined on input line 5634. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.hRIXS' on page 47 undefined on input line 5634. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.MaranaX' on page 47 undefined on input line 5634. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.Viking' on page 47 undefined on input line 5634. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_bam' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_bam_params' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.check_peak_params' on page 47 undefined on input line 5810. Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|\T1/txtt/m/sl/10 check_peak_params\T1/qtm/m/n/10 (run, mnemonic[, raw_trace, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_digitizer_peaks' on page 47 undefined on input line 5810. Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|\T1/txtt/m/sl/10 get_digitizer_peaks\T1/qtm/m/n/10 (run[, mnemon-ics, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_laser_peaks' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_peaks' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_tim_peaks' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.digitizer_signal_description' on page 47 undefined on input line 581 0. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_dig_avg_trace' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_data_formatted' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.load_xarray' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.save_attributes_h5' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.save_xarray' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.create_dssc_bins' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_xgm_formatted' on page 47 undefined on input line 5810. Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|\T1/txtt/m/sl/10 get_xgm_formatted\T1/qtm/m/n/10 (run_obj, xgm_name, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.load_dssc_info' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.load_mask' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.quickmask_DSSC_ASIC' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.process_dssc_data' on page 47 undefined on input line 5810. Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|\T1/txtt/m/sl/10 process_dssc_data\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_pes_params' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_pes_tof' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.calibrate_xgm' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_xgm' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_bam' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_bam_params' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.check_peak_params' on page 47 undefined on input line 5810. Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|\T1/txtt/m/sl/10 check_peak_params\T1/qtm/m/n/10 (run, mnemonic[, raw_trace, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_digitizer_peaks' on page 47 undefined on input line 5810. Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|\T1/txtt/m/sl/10 get_digitizer_peaks\T1/qtm/m/n/10 (run[, mnemon-ics, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_laser_peaks' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_peaks' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_tim_peaks' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.digitizer_signal_description' on page 47 undefined on input line 581 0. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_dig_avg_trace' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_data_formatted' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.load_xarray' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.save_attributes_h5' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.save_xarray' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.create_dssc_bins' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_xgm_formatted' on page 47 undefined on input line 5810. Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|\T1/txtt/m/sl/10 get_xgm_formatted\T1/qtm/m/n/10 (run_obj, xgm_name, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.load_dssc_info' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.load_mask' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.quickmask_DSSC_ASIC' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.process_dssc_data' on page 47 undefined on input line 5810. Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|\T1/txtt/m/sl/10 process_dssc_data\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_pes_params' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_pes_tof' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.calibrate_xgm' on page 47 undefined on input line 5810. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.get_xgm' on page 47 undefined on input line 5810. [47] [48] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.__all__' on page 49 undefined on input line 5832. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.__all__' on page 49 undefined on input line 5832. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.AzimuthalIntegrator' on page 49 undefined on input line 5930. [49] [50] [51] [52] [53] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxValueError' on page 54 undefined on input line 65 25. [54] [55] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxFileError' on page 56 undefined on input line 692 1. [56] [57] [58] [59] [60] [61] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/detectors/index:toolbox_scs .detectors.hRIXS' on page 62 undefined on input line 7768. [62] [63] [64] [65] [66] [67] [68] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern/index:to olbox_scs.misc.bunch_pattern.npulses_has_changed' on page 69 undefined on input line 8683. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern/index:to olbox_scs.misc.bunch_pattern.get_sase_pId' on page 69 undefined on input line 8 683. Underfull \hbox (badness 10000) in paragraph at lines 8683--8683 []|\T1/txtt/m/sl/10 get_sase_pId\T1/qtm/m/n/10 (run[, loc, run_mnemonics, bpt, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern/index:to olbox_scs.misc.bunch_pattern.extractBunchPattern' on page 69 undefined on input line 8683. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern/index:to olbox_scs.misc.bunch_pattern.pulsePatternInfo' on page 69 undefined on input li ne 8683. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern/index:to olbox_scs.misc.bunch_pattern.repRate' on page 69 undefined on input line 8683. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern/index:to olbox_scs.misc.bunch_pattern.npulses_has_changed' on page 69 undefined on input line 8683. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern/index:to olbox_scs.misc.bunch_pattern.get_sase_pId' on page 69 undefined on input line 8 683. Underfull \hbox (badness 10000) in paragraph at lines 8683--8683 []|\T1/txtt/m/sl/10 get_sase_pId\T1/qtm/m/n/10 (run[, loc, run_mnemonics, bpt, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern/index:to olbox_scs.misc.bunch_pattern.extractBunchPattern' on page 69 undefined on input line 8683. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern/index:to olbox_scs.misc.bunch_pattern.pulsePatternInfo' on page 69 undefined on input li ne 8683. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern/index:to olbox_scs.misc.bunch_pattern.repRate' on page 69 undefined on input line 8683. [69] [70] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern_external /index:toolbox_scs.misc.bunch_pattern_external.is_pulse_at' on page 71 undefine d on input line 8937. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern_external /index:toolbox_scs.misc.bunch_pattern_external.is_sase_3' on page 71 undefined on input line 8937. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern_external /index:toolbox_scs.misc.bunch_pattern_external.is_sase_1' on page 71 undefined on input line 8937. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern_external /index:toolbox_scs.misc.bunch_pattern_external.is_ppl' on page 71 undefined on input line 8937. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern_external /index:toolbox_scs.misc.bunch_pattern_external.is_pulse_at' on page 71 undefine d on input line 8937. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern_external /index:toolbox_scs.misc.bunch_pattern_external.is_sase_3' on page 71 undefined on input line 8937. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern_external /index:toolbox_scs.misc.bunch_pattern_external.is_sase_1' on page 71 undefined on input line 8937. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/bunch_pattern_external /index:toolbox_scs.misc.bunch_pattern_external.is_ppl' on page 71 undefined on input line 8937. [71] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/laser_utils/index:tool box_scs.misc.laser_utils.positionToDelay' on page 72 undefined on input line 91 06. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/laser_utils/index:tool box_scs.misc.laser_utils.delayToPosition' on page 72 undefined on input line 91 06. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/laser_utils/index:tool box_scs.misc.laser_utils.degToRelPower' on page 72 undefined on input line 9106 . LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/laser_utils/index:tool box_scs.misc.laser_utils.fluenceCalibration' on page 72 undefined on input line 9106. Underfull \hbox (badness 10000) in paragraph at lines 9106--9106 []|\T1/txtt/m/sl/10 fluenceCalibration\T1/qtm/m/n/10 (hwp, power_mW, npulses, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/laser_utils/index:tool box_scs.misc.laser_utils.align_ol_to_fel_pId' on page 72 undefined on input lin e 9106. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/laser_utils/index:tool box_scs.misc.laser_utils.positionToDelay' on page 72 undefined on input line 91 06. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/laser_utils/index:tool box_scs.misc.laser_utils.delayToPosition' on page 72 undefined on input line 91 06. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/laser_utils/index:tool box_scs.misc.laser_utils.degToRelPower' on page 72 undefined on input line 9106 . LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/laser_utils/index:tool box_scs.misc.laser_utils.fluenceCalibration' on page 72 undefined on input line 9106. Underfull \hbox (badness 10000) in paragraph at lines 9106--9106 []|\T1/txtt/m/sl/10 fluenceCalibration\T1/qtm/m/n/10 (hwp, power_mW, npulses, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/laser_utils/index:tool box_scs.misc.laser_utils.align_ol_to_fel_pId' on page 72 undefined on input lin e 9106. [72] [73] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/undulator/index:toolbo x_scs.misc.undulator.get_undulator_config' on page 74 undefined on input line 9 349. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/undulator/index:toolbo x_scs.misc.undulator.get_undulator_config' on page 74 undefined on input line 9 349. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .extractBunchPattern' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .get_sase_pId' on page 74 undefined on input line 9517. Underfull \hbox (badness 10000) in paragraph at lines 9517--9517 []|\T1/txtt/m/sl/10 get_sase_pId\T1/qtm/m/n/10 (run[, loc, run_mnemonics, bpt, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .npulses_has_changed' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .pulsePatternInfo' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .repRate' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .is_sase_3' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .is_sase_1' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .is_ppl' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .is_pulse_at' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .degToRelPower' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .positionToDelay' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .delayToPosition' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .fluenceCalibration' on page 74 undefined on input line 9517. Underfull \hbox (badness 10000) in paragraph at lines 9517--9517 []|\T1/txtt/m/sl/10 fluenceCalibration\T1/qtm/m/n/10 (hwp, power_mW, npulses, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .align_ol_to_fel_pId' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .get_undulator_config' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .extractBunchPattern' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .get_sase_pId' on page 74 undefined on input line 9517. Underfull \hbox (badness 10000) in paragraph at lines 9517--9517 []|\T1/txtt/m/sl/10 get_sase_pId\T1/qtm/m/n/10 (run[, loc, run_mnemonics, bpt, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .npulses_has_changed' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .pulsePatternInfo' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .repRate' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .is_sase_3' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .is_sase_1' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .is_ppl' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .is_pulse_at' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .degToRelPower' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .positionToDelay' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .delayToPosition' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .fluenceCalibration' on page 74 undefined on input line 9517. Underfull \hbox (badness 10000) in paragraph at lines 9517--9517 []|\T1/txtt/m/sl/10 fluenceCalibration\T1/qtm/m/n/10 (hwp, power_mW, npulses, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .align_ol_to_fel_pId' on page 74 undefined on input line 9517. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .get_undulator_config' on page 74 undefined on input line 9517. [74] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .__all__' on page 75 undefined on input line 9539. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/misc/index:toolbox_scs.misc .__all__' on page 75 undefined on input line 9539. [75] [76] [77] [78] [79] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/Reflectivity/index :toolbox_scs.routines.Reflectivity.reflectivity' on page 80 undefined on input line 10159. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/Reflectivity/index :toolbox_scs.routines.Reflectivity.reflectivity' on page 80 undefined on input line 10159. [80] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/XAS/index:toolbox_ scs.routines.XAS.xas' on page 81 undefined on input line 10306. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/XAS/index:toolbox_ scs.routines.XAS.xasxmcd' on page 81 undefined on input line 10306. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/XAS/index:toolbox_ scs.routines.XAS.xas' on page 81 undefined on input line 10306. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/XAS/index:toolbox_ scs.routines.XAS.xasxmcd' on page 81 undefined on input line 10306. [81] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.parameters' on page 82 undefined on input line 10417. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.parameters' on page 82 undefined on input line 10417. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.get_roi_pixel_pos' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.bad_pixel_map' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_dark' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.histogram_module' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_histogram' on page 82 undefined on input line 10642. Underfull \hbox (badness 10000) in paragraph at lines 10642--10642 []|\T1/txtt/m/sl/10 inspect_histogram\T1/qtm/m/n/10 (arr[, arr_dark, mask, ex- LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.find_rois' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.find_rois_from_params' on page 82 undefined on input line 1064 2. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_rois' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.compute_flat_field_correction' on page 82 undefined on input l ine 10642. Underfull \hbox (badness 10000) in paragraph at lines 10642--10642 []|\T1/txtt/m/sl/10 compute_flat_field_correction\T1/qtm/m/n/10 (rois, params[, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_flat_field_domain' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_plane_fitting' on page 82 undefined on input line 1064 2. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.plane_fitting_domain' on page 82 undefined on input line 10642 . LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.plane_fitting' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.ff_refine_crit' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.ff_refine_fit' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.nl_domain' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.nl_lut' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.nl_crit' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.nl_crit_sk' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.nl_fit' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_nl_fit' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.snr' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_Fnl' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_correction' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_correction_sk' on page 82 undefined on input line 1064 2. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.load_dssc_module' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.average_module' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.process_module' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.process' on page 82 undefined on input line 10642. Underfull \hbox (badness 7362) in paragraph at lines 10642--10642 []|\T1/txtt/m/sl/10 process\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, ma sk, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_saturation' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.get_roi_pixel_pos' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.bad_pixel_map' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_dark' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.histogram_module' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_histogram' on page 82 undefined on input line 10642. Underfull \hbox (badness 10000) in paragraph at lines 10642--10642 []|\T1/txtt/m/sl/10 inspect_histogram\T1/qtm/m/n/10 (arr[, arr_dark, mask, ex- LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.find_rois' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.find_rois_from_params' on page 82 undefined on input line 1064 2. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_rois' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.compute_flat_field_correction' on page 82 undefined on input l ine 10642. Underfull \hbox (badness 10000) in paragraph at lines 10642--10642 []|\T1/txtt/m/sl/10 compute_flat_field_correction\T1/qtm/m/n/10 (rois, params[, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_flat_field_domain' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_plane_fitting' on page 82 undefined on input line 1064 2. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.plane_fitting_domain' on page 82 undefined on input line 10642 . LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.plane_fitting' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.ff_refine_crit' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.ff_refine_fit' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.nl_domain' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.nl_lut' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.nl_crit' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.nl_crit_sk' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.nl_fit' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_nl_fit' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.snr' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_Fnl' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_correction' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_correction_sk' on page 82 undefined on input line 1064 2. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.load_dssc_module' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.average_module' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.process_module' on page 82 undefined on input line 10642. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.process' on page 82 undefined on input line 10642. Underfull \hbox (badness 7362) in paragraph at lines 10642--10642 []|\T1/txtt/m/sl/10 process\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, ma sk, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/boz/index:toolbox_ scs.routines.boz.inspect_saturation' on page 82 undefined on input line 10642. [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/knife_edge/index:t oolbox_scs.routines.knife_edge.knife_edge' on page 94 undefined on input line 1 1900. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/knife_edge/index:t oolbox_scs.routines.knife_edge.knife_edge' on page 94 undefined on input line 1 1900. [94] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.parameters' on page 95 undefined on input line 11990. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.parameters' on page 95 undefined on input line 11990. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.xas' on page 95 undefined on input line 12022. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.xasxmcd' on page 95 undefined on input line 12029. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.get_roi_pixel_pos' on page 95 undefined on input line 12036. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.bad_pixel_map' on page 95 undefined on input line 12043. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.inspect_dark' on page 95 undefined on input line 12050. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.histogram_module' on page 95 undefined on input line 12057. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.inspect_histogram' on page 95 undefined on input line 12064. Underfull \hbox (badness 10000) in paragraph at lines 12063--12065 []|\T1/txtt/m/sl/10 inspect_histogram\T1/qtm/m/n/10 (arr[, arr_dark, mask, ex- LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.find_rois' on page 95 undefined on input line 12071. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.find_rois_from_params' on page 95 undefined on input line 12078. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.inspect_rois' on page 95 undefined on input line 12085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.compute_flat_field_correction' on page 95 undefined on input line 1209 2. Underfull \hbox (badness 10000) in paragraph at lines 12091--12093 []|\T1/txtt/m/sl/10 compute_flat_field_correction\T1/qtm/m/n/10 (rois, params[, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.inspect_flat_field_domain' on page 95 undefined on input line 12099. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.inspect_plane_fitting' on page 95 undefined on input line 12106. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.plane_fitting_domain' on page 95 undefined on input line 12113. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.plane_fitting' on page 95 undefined on input line 12120. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.ff_refine_crit' on page 95 undefined on input line 12127. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.ff_refine_fit' on page 95 undefined on input line 12134. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.nl_domain' on page 95 undefined on input line 12141. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.nl_lut' on page 95 undefined on input line 12148. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.nl_crit' on page 95 undefined on input line 12155. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.nl_crit_sk' on page 95 undefined on input line 12162. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.nl_fit' on page 95 undefined on input line 12169. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.inspect_nl_fit' on page 95 undefined on input line 12176. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.snr' on page 95 undefined on input line 12183. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.inspect_Fnl' on page 95 undefined on input line 12190. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.inspect_correction' on page 95 undefined on input line 12197. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.inspect_correction_sk' on page 95 undefined on input line 12204. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.load_dssc_module' on page 95 undefined on input line 12211. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.average_module' on page 95 undefined on input line 12218. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.process_module' on page 95 undefined on input line 12225. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.process' on page 95 undefined on input line 12232. Underfull \hbox (badness 7362) in paragraph at lines 12231--12233 []|\T1/txtt/m/sl/10 process\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, ma sk, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.inspect_saturation' on page 95 undefined on input line 12239. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.reflectivity' on page 95 undefined on input line 12246. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/knife_edge/index:m odule-toolbox_scs.routines.knife_edge' on page 95 undefined on input line 12253 . Package longtable Warning: Column widths have changed (longtable) in table 1 on input line 12259. [95] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.__all__' on page 96 undefined on input line 12282. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/routines/index:toolbox_scs. routines.__all__' on page 96 undefined on input line 12282. [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.TestDSSC' on page 108 undefined on input line 1378 4. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.TestDSSC' on page 108 undefined on input line 1378 4. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.setup_tmp_dir' on page 108 undefined on input line 13834. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.cleanup_tmp_dir' on page 108 undefined on input li ne 13834. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.list_suites' on page 108 undefined on input line 1 3834. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.suite' on page 108 undefined on input line 13834. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.main' on page 108 undefined on input line 13834. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.setup_tmp_dir' on page 108 undefined on input line 13834. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.cleanup_tmp_dir' on page 108 undefined on input li ne 13834. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.list_suites' on page 108 undefined on input line 1 3834. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.suite' on page 108 undefined on input line 13834. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.main' on page 108 undefined on input line 13834. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.log_root' on page 108 undefined on input line 1387 7. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.suites' on page 108 undefined on input line 13877. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls._temp_dirs' on page 108 undefined on input line 13 877. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.parser' on page 108 undefined on input line 13877. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.log_root' on page 108 undefined on input line 1387 7. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.suites' on page 108 undefined on input line 13877. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls._temp_dirs' on page 108 undefined on input line 13 877. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_dssc_cls/index:to olbox_scs.test.test_dssc_cls.parser' on page 108 undefined on input line 13877. [108] [109] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_hrixs/index:toolb ox_scs.test.test_hrixs.TestHRIXS' on page 110 undefined on input line 14113. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_hrixs/index:toolb ox_scs.test.test_hrixs.TestHRIXS' on page 110 undefined on input line 14113. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.TestDataAccess' on page 110 undefined on input line 14235. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.TestDataAccess' on page 110 undefined on input line 14235. [110] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.list_suites' on page 111 undefined on input line 14271. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.suite' on page 111 undefined on input line 14271. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.start_tests' on page 111 undefined on input line 14271. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.list_suites' on page 111 undefined on input line 14271. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.suite' on page 111 undefined on input line 14271. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.start_tests' on page 111 undefined on input line 14271. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.proposalNB' on page 111 undefined on input line 14314. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.runNB' on page 111 undefined on input line 14314. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.suites' on page 111 undefined on input line 14314. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.parser' on page 111 undefined on input line 14314. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.proposalNB' on page 111 undefined on input line 14314. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.runNB' on page 111 undefined on input line 14314. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.suites' on page 111 undefined on input line 14314. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_misc/index:toolbo x_scs.test.test_misc.parser' on page 111 undefined on input line 14314. [111] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.TestToolbox' on page 112 undefined on input line 14565. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.TestToolbox' on page 112 undefined on input line 14565. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.list_suites' on page 112 undefined on input line 14601. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.suite' on page 112 undefined on input line 14601 . LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.main' on page 112 undefined on input line 14601. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.list_suites' on page 112 undefined on input line 14601. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.suite' on page 112 undefined on input line 14601 . LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.main' on page 112 undefined on input line 14601. [112] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.log_root' on page 113 undefined on input line 14 637. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.suites' on page 113 undefined on input line 1463 7. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.parser' on page 113 undefined on input line 1463 7. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.log_root' on page 113 undefined on input line 14 637. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.suites' on page 113 undefined on input line 1463 7. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_top_level/index:t oolbox_scs.test.test_top_level.parser' on page 113 undefined on input line 1463 7. [113] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.TestDataAccess' on page 114 undefined on input line 1487 9. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.TestDataAccess' on page 114 undefined on input line 1487 9. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.list_suites' on page 114 undefined on input line 14915. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.suite' on page 114 undefined on input line 14915. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.main' on page 114 undefined on input line 14915. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.list_suites' on page 114 undefined on input line 14915. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.suite' on page 114 undefined on input line 14915. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.main' on page 114 undefined on input line 14915. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.suites' on page 114 undefined on input line 14944. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.parser' on page 114 undefined on input line 14944. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.suites' on page 114 undefined on input line 14944. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/test/test_utils/index:toolb ox_scs.test.test_utils.parser' on page 114 undefined on input line 14944. [114] [115] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxError' on page 116 undefined on input line 15171. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxError' on page 116 undefined on input line 15186. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxError' on page 116 undefined on input line 15201. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxError' on page 116 undefined on input line 15216. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/pkg/index:toolbox_scs. util.pkg.get_version' on page 116 undefined on input line 15250. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/pkg/index:toolbox_scs. util.pkg.get_version' on page 116 undefined on input line 15250. [116] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .load' on page 117 undefined on input line 15368. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .run_by_path' on page 117 undefined on input line 15368. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .find_run_path' on page 117 undefined on input line 15368. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .open_run' on page 117 undefined on input line 15368. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .get_array' on page 117 undefined on input line 15368. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .load_run_values' on page 117 undefined on input line 15368. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .concatenateRuns' on page 117 undefined on input line 15368. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .check_data_rate' on page 117 undefined on input line 15368. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .load' on page 117 undefined on input line 15368. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .run_by_path' on page 117 undefined on input line 15368. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .find_run_path' on page 117 undefined on input line 15368. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .open_run' on page 117 undefined on input line 15368. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .get_array' on page 117 undefined on input line 15368. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .load_run_values' on page 117 undefined on input line 15368. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .concatenateRuns' on page 117 undefined on input line 15368. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:toolbox_scs.load .check_data_rate' on page 117 undefined on input line 15368. [117] Underfull \hbox (badness 5970) in paragraph at lines 15459--15462 []\T1/txtt/bx/n/10 extract_bam \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 bool\T1/qtm/m/n /10 ) ^^U If True, ex-tracts the val-ues from BAM vari-ables (e.g. [118] [119] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxValueError' on page 120 undefined on input line 1 5707. [120] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/mnemonics_machinery/index:t oolbox_scs.mnemonics_machinery.mnemonics_for_run' on page 121 undefined on inpu t line 15866. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/mnemonics_machinery/index:t oolbox_scs.mnemonics_machinery.mnemonics_for_run' on page 121 undefined on inpu t line 15866. [121] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.Azimuthal Integrator' on page 122 undefined on input line 15983. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.Azimuthal IntegratorDSSC' on page 122 undefined on input line 15983. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.DSSCBinne r' on page 122 undefined on input line 15983. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.DSSCForma tter' on page 122 undefined on input line 15983. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.hRIXS' on page 122 undefined on input line 15983. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.MaranaX' on page 122 undefined on input line 15983. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.Viking' o n page 122 undefined on input line 15983. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.parameter s' on page 122 undefined on input line 15983. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.Azimuthal Integrator' on page 122 undefined on input line 15983. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.Azimuthal IntegratorDSSC' on page 122 undefined on input line 15983. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.DSSCBinne r' on page 122 undefined on input line 15983. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.DSSCForma tter' on page 122 undefined on input line 15983. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.hRIXS' on page 122 undefined on input line 15983. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.MaranaX' on page 122 undefined on input line 15983. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.Viking' o n page 122 undefined on input line 15983. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.parameter s' on page 122 undefined on input line 15983. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_bam' on page 122 undefined on input line 16015. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_bam_p arams' on page 122 undefined on input line 16022. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.check_pea k_params' on page 122 undefined on input line 16029. Underfull \hbox (badness 10000) in paragraph at lines 16028--16030 []|\T1/txtt/m/sl/10 check_peak_params\T1/qtm/m/n/10 (run, mnemonic[, raw_trace, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_digit izer_peaks' on page 122 undefined on input line 16036. Underfull \hbox (badness 10000) in paragraph at lines 16035--16037 []|\T1/txtt/m/sl/10 get_digitizer_peaks\T1/qtm/m/n/10 (run[, mnemon-ics, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_laser _peaks' on page 122 undefined on input line 16043. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_peaks ' on page 122 undefined on input line 16050. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_tim_p eaks' on page 122 undefined on input line 16057. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.digitizer _signal_description' on page 122 undefined on input line 16064. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_dig_a vg_trace' on page 122 undefined on input line 16071. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_data_ formatted' on page 122 undefined on input line 16078. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.load_xarr ay' on page 122 undefined on input line 16085. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.save_attr ibutes_h5' on page 122 undefined on input line 16092. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.save_xarr ay' on page 122 undefined on input line 16099. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.create_ds sc_bins' on page 122 undefined on input line 16106. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_xgm_f ormatted' on page 122 undefined on input line 16113. Underfull \hbox (badness 10000) in paragraph at lines 16112--16114 []|\T1/txtt/m/sl/10 get_xgm_formatted\T1/qtm/m/n/10 (run_obj, xgm_name, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.load_dssc _info' on page 122 undefined on input line 16120. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.load_mask ' on page 122 undefined on input line 16127. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.quickmask _DSSC_ASIC' on page 122 undefined on input line 16134. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.process_d ssc_data' on page 122 undefined on input line 16141. Underfull \hbox (badness 10000) in paragraph at lines 16140--16142 []|\T1/txtt/m/sl/10 process_dssc_data\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_pes_p arams' on page 122 undefined on input line 16148. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_pes_t of' on page 122 undefined on input line 16155. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.calibrate _xgm' on page 122 undefined on input line 16162. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_xgm' on page 122 undefined on input line 16169. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.concatena teRuns' on page 122 undefined on input line 16176. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.find_run_ path' on page 122 undefined on input line 16183. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_array ' on page 122 undefined on input line 16190. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/load/index:module-toolbox_s cs.load' on page 122 undefined on input line 16197. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.open_run' on page 122 undefined on input line 16204. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.run_by_pa th' on page 122 undefined on input line 16211. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.load_run_ values' on page 122 undefined on input line 16218. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.check_dat a_rate' on page 122 undefined on input line 16225. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.extractBu nchPattern' on page 122 undefined on input line 16232. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_sase_ pId' on page 122 undefined on input line 16239. Underfull \hbox (badness 10000) in paragraph at lines 16238--16240 []|\T1/txtt/m/sl/10 get_sase_pId\T1/qtm/m/n/10 (run[, loc, run_mnemonics, bpt, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.npulses_h as_changed' on page 122 undefined on input line 16246. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.pulsePatt ernInfo' on page 122 undefined on input line 16253. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.repRate' on page 122 undefined on input line 16260. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.is_sase_3 ' on page 122 undefined on input line 16267. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.is_sase_1 ' on page 122 undefined on input line 16274. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.is_ppl' o n page 122 undefined on input line 16281. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.is_pulse_ at' on page 122 undefined on input line 16288. [122] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.degToRelP ower' on page 123 undefined on input line 16295. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.positionT oDelay' on page 123 undefined on input line 16302. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.delayToPo sition' on page 123 undefined on input line 16309. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.fluenceCa libration' on page 123 undefined on input line 16316. Underfull \hbox (badness 10000) in paragraph at lines 16315--16317 []|\T1/txtt/m/sl/10 fluenceCalibration\T1/qtm/m/n/10 (hwp, power_mW, npulses, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.align_ol_ to_fel_pId' on page 123 undefined on input line 16323. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_undul ator_config' on page 123 undefined on input line 16330. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.mnemonics _for_run' on page 123 undefined on input line 16337. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.xas' on p age 123 undefined on input line 16344. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.xasxmcd' on page 123 undefined on input line 16351. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.get_roi_p ixel_pos' on page 123 undefined on input line 16358. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.bad_pixel _map' on page 123 undefined on input line 16365. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.inspect_d ark' on page 123 undefined on input line 16372. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.histogram _module' on page 123 undefined on input line 16379. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.inspect_h istogram' on page 123 undefined on input line 16386. Underfull \hbox (badness 10000) in paragraph at lines 16385--16387 []|\T1/txtt/m/sl/10 inspect_histogram\T1/qtm/m/n/10 (arr[, arr_dark, mask, ex- LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.find_rois ' on page 123 undefined on input line 16393. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.find_rois _from_params' on page 123 undefined on input line 16400. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.inspect_r ois' on page 123 undefined on input line 16407. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.compute_f lat_field_correction' on page 123 undefined on input line 16414. Underfull \hbox (badness 10000) in paragraph at lines 16413--16415 []|\T1/txtt/m/sl/10 compute_flat_field_correction\T1/qtm/m/n/10 (rois, params[, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.inspect_f lat_field_domain' on page 123 undefined on input line 16421. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.inspect_p lane_fitting' on page 123 undefined on input line 16428. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.plane_fit ting_domain' on page 123 undefined on input line 16435. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.plane_fit ting' on page 123 undefined on input line 16442. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.ff_refine _crit' on page 123 undefined on input line 16449. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.ff_refine _fit' on page 123 undefined on input line 16456. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.nl_domain ' on page 123 undefined on input line 16463. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.nl_lut' o n page 123 undefined on input line 16470. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.nl_crit' on page 123 undefined on input line 16477. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.nl_crit_s k' on page 123 undefined on input line 16484. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.nl_fit' o n page 123 undefined on input line 16491. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.inspect_n l_fit' on page 123 undefined on input line 16498. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.snr' on p age 123 undefined on input line 16505. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.inspect_F nl' on page 123 undefined on input line 16512. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.inspect_c orrection' on page 123 undefined on input line 16519. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.inspect_c orrection_sk' on page 123 undefined on input line 16526. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.load_dssc _module' on page 123 undefined on input line 16533. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.average_m odule' on page 123 undefined on input line 16540. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.process_m odule' on page 123 undefined on input line 16547. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.process' on page 123 undefined on input line 16554. Underfull \hbox (badness 7362) in paragraph at lines 16553--16555 []|\T1/txtt/m/sl/10 process\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, ma sk, LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.inspect_s aturation' on page 123 undefined on input line 16561. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.reflectiv ity' on page 123 undefined on input line 16568. [123] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.knife_edg e' on page 124 undefined on input line 16575. Package longtable Warning: Column widths have changed (longtable) in table 2 on input line 16581. [124] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.mnemonics ' on page 125 undefined on input line 16632. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:id39' on page 125 und efined on input line 16632. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:id39' on page 125 und efined on input line 16632. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:id39' on page 125 und efined on input line 16632. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:id39' on page 125 und efined on input line 16632. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.mnemonics ' on page 125 undefined on input line 16632. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:id39' on page 125 und efined on input line 16632. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:id39' on page 125 und efined on input line 16632. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:id39' on page 125 und efined on input line 16632. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:id39' on page 125 und efined on input line 16632. LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.Azimuthal Integrator' on page 125 undefined on input line 16748. [125] [126] [127] [128] [129] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxValueError' on page 130 undefined on input line 1 7343. [130] [131] [132] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxFileError' on page 133 undefined on input line 17 739. [133] [134] [135] [136] [137] [138] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/index:toolbox_scs.hRIXS' on page 139 undefined on input line 18586. [139] [140] [141] [142] [143] [144] [145] LaTeX Warning: Hyper reference `autoapi/toolbox_scs/util/exceptions/index:toolb ox_scs.util.exceptions.ToolBoxValueError' on page 146 undefined on input line 1 9541. Underfull \hbox (badness 5970) in paragraph at lines 19643--19646 []\T1/txtt/bx/n/10 extract_bam \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 bool\T1/qtm/m/n /10 ) ^^U If True, ex-tracts the val-ues from BAM vari-ables (e.g. [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] LaTeX Warning: Reference `autoapi/toolbox_scs/index:module-toolbox_scs' on page 165 undefined on input line 21977. LaTeX Warning: Reference `autoapi/toolbox_scs/base/index:module-toolbox_scs.bas e' on page 165 undefined on input line 21978. LaTeX Warning: Reference `autoapi/toolbox_scs/base/knife_edge/index:module-tool box_scs.base.knife_edge' on page 165 undefined on input line 21979. LaTeX Warning: Reference `autoapi/toolbox_scs/base/tests/index:module-toolbox_s cs.base.tests' on page 165 undefined on input line 21980. LaTeX Warning: Reference `autoapi/toolbox_scs/base/tests/test_knife_edge/index: module-toolbox_scs.base.tests.test_knife_edge' on page 165 undefined on input l ine 21981. LaTeX Warning: Reference `autoapi/toolbox_scs/constants/index:module-toolbox_sc s.constants' on page 165 undefined on input line 21982. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/index:module-toolbox_sc s.detectors' on page 165 undefined on input line 21983. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/azimuthal_integrator/in dex:module-toolbox_scs.detectors.azimuthal_integrator' on page 165 undefined on input line 21984. Underfull \hbox (badness 10000) in paragraph at lines 21984--21985 []\T1/txtt/m/n/10 toolbox_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 , LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/bam_detectors/index:mod ule-toolbox_scs.detectors.bam_detectors' on page 165 undefined on input line 21 985. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/digitizers/index:module -toolbox_scs.detectors.digitizers' on page 165 undefined on input line 21986. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/dssc/index:module-toolb ox_scs.detectors.dssc' on page 165 undefined on input line 21987. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/dssc_data/index:module- toolbox_scs.detectors.dssc_data' on page 165 undefined on input line 21988. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/dssc_misc/index:module- toolbox_scs.detectors.dssc_misc' on page 165 undefined on input line 21989. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/dssc_plot/index:module- toolbox_scs.detectors.dssc_plot' on page 165 undefined on input line 21990. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/dssc_processing/index:m odule-toolbox_scs.detectors.dssc_processing' on page 165 undefined on input lin e 21991. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/fccd/index:module-toolb ox_scs.detectors.fccd' on page 165 undefined on input line 21992. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/hrixs/index:module-tool box_scs.detectors.hrixs' on page 165 undefined on input line 21993. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/pes/index:module-toolbo x_scs.detectors.pes' on page 165 undefined on input line 21994. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/viking/index:module-too lbox_scs.detectors.viking' on page 165 undefined on input line 21995. LaTeX Warning: Reference `autoapi/toolbox_scs/detectors/xgm/index:module-toolbo x_scs.detectors.xgm' on page 165 undefined on input line 21996. LaTeX Warning: Reference `autoapi/toolbox_scs/load/index:module-toolbox_scs.loa d' on page 165 undefined on input line 21997. LaTeX Warning: Reference `autoapi/toolbox_scs/misc/index:module-toolbox_scs.mis c' on page 165 undefined on input line 21998. LaTeX Warning: Reference `autoapi/toolbox_scs/misc/bunch_pattern/index:module-t oolbox_scs.misc.bunch_pattern' on page 165 undefined on input line 21999. LaTeX Warning: Reference `autoapi/toolbox_scs/misc/bunch_pattern_external/index :module-toolbox_scs.misc.bunch_pattern_external' on page 165 undefined on input line 22000. LaTeX Warning: Reference `autoapi/toolbox_scs/misc/laser_utils/index:module-too lbox_scs.misc.laser_utils' on page 165 undefined on input line 22001. LaTeX Warning: Reference `autoapi/toolbox_scs/misc/undulator/index:module-toolb ox_scs.misc.undulator' on page 165 undefined on input line 22002. LaTeX Warning: Reference `autoapi/toolbox_scs/mnemonics_machinery/index:module- toolbox_scs.mnemonics_machinery' on page 165 undefined on input line 22003. LaTeX Warning: Reference `autoapi/toolbox_scs/routines/index:module-toolbox_scs .routines' on page 165 undefined on input line 22004. LaTeX Warning: Reference `autoapi/toolbox_scs/routines/boz/index:module-toolbox _scs.routines.boz' on page 165 undefined on input line 22005. LaTeX Warning: Reference `autoapi/toolbox_scs/routines/knife_edge/index:module- toolbox_scs.routines.knife_edge' on page 165 undefined on input line 22006. LaTeX Warning: Reference `autoapi/toolbox_scs/routines/Reflectivity/index:modul e-toolbox_scs.routines.Reflectivity' on page 165 undefined on input line 22007. LaTeX Warning: Reference `autoapi/toolbox_scs/routines/XAS/index:module-toolbox _scs.routines.XAS' on page 165 undefined on input line 22008. LaTeX Warning: Reference `autoapi/toolbox_scs/test/index:module-toolbox_scs.tes t' on page 165 undefined on input line 22009. LaTeX Warning: Reference `autoapi/toolbox_scs/test/test_dssc_cls/index:module-t oolbox_scs.test.test_dssc_cls' on page 165 undefined on input line 22010. LaTeX Warning: Reference `autoapi/toolbox_scs/test/test_hrixs/index:module-tool box_scs.test.test_hrixs' on page 165 undefined on input line 22011. LaTeX Warning: Reference `autoapi/toolbox_scs/test/test_misc/index:module-toolb ox_scs.test.test_misc' on page 165 undefined on input line 22012. LaTeX Warning: Reference `autoapi/toolbox_scs/test/test_top_level/index:module- toolbox_scs.test.test_top_level' on page 165 undefined on input line 22013. LaTeX Warning: Reference `autoapi/toolbox_scs/test/test_utils/index:module-tool box_scs.test.test_utils' on page 165 undefined on input line 22014. LaTeX Warning: Reference `autoapi/toolbox_scs/util/index:module-toolbox_scs.uti l' on page 165 undefined on input line 22015. LaTeX Warning: Reference `autoapi/toolbox_scs/util/exceptions/index:module-tool box_scs.util.exceptions' on page 165 undefined on input line 22016. LaTeX Warning: Reference `autoapi/toolbox_scs/util/pkg/index:module-toolbox_scs .util.pkg' on page 165 undefined on input line 22017. [165] No file scs-toolbox.ind. Package longtable Warning: Table widths have changed. Rerun LaTeX. (./scs-toolbox.aux) Package rerunfilecheck Warning: File `scs-toolbox.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}{ /usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on scs-toolbox.pdf (169 pages, 694334 bytes). Transcript written on scs-toolbox.log. Latexmk: Index file 'scs-toolbox.idx' was written Latexmk: Missing input file: 'scs-toolbox.ind' from line 'No file scs-toolbox.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'scs-toolbox.pdf' Latexmk: List of undefined refs and citations: Reference `autoapi/toolbox_scs/base/index:module-toolbox_scs.base' on page 165 undefined on input line 21978 Reference `autoapi/toolbox_scs/base/knife_edge/index:module-toolbox_scs.base.knife_edge' on page 165 undefined on input line 21979 Reference `autoapi/toolbox_scs/base/tests/index:module-toolbox_scs.base.tests' on page 165 undefined on input line 21980 Reference `autoapi/toolbox_scs/base/tests/test_knife_edge/index:module-toolbox_scs.base.tests.test_knife_edge' on page 165 undefined on input line 21981 Reference `autoapi/toolbox_scs/constants/index:module-toolbox_scs.constants' on page 165 undefined on input line 21982 Reference `autoapi/toolbox_scs/detectors/azimuthal_integrator/index:module-toolbox_scs.detectors.azimuthal_integrator' on page 165 undefined on input line 21984 Reference `autoapi/toolbox_scs/detectors/bam_detectors/index:module-toolbox_scs.detectors.bam_detectors' on page 165 undefined on input line 21985 Reference `autoapi/toolbox_scs/detectors/digitizers/index:module-toolbox_scs.detectors.digitizers' on page 165 undefined on input line 21986 Reference `autoapi/toolbox_scs/detectors/dssc/index:module-toolbox_scs.detectors.dssc' on page 165 undefined on input line 21987 Reference `autoapi/toolbox_scs/detectors/dssc_data/index:module-toolbox_scs.detectors.dssc_data' on page 165 undefined on input line 21988 Reference `autoapi/toolbox_scs/detectors/dssc_misc/index:module-toolbox_scs.detectors.dssc_misc' on page 165 undefined on input line 21989 Reference `autoapi/toolbox_scs/detectors/dssc_plot/index:module-toolbox_scs.detectors.dssc_plot' on page 165 undefined on input line 21990 Reference `autoapi/toolbox_scs/detectors/dssc_processing/index:module-toolbox_scs.detectors.dssc_processing' on page 165 undefined on input line 21991 Reference `autoapi/toolbox_scs/detectors/fccd/index:module-toolbox_scs.detectors.fccd' on page 165 undefined on input line 21992 Reference `autoapi/toolbox_scs/detectors/hrixs/index:module-toolbox_scs.detectors.hrixs' on page 165 undefined on input line 21993 Reference `autoapi/toolbox_scs/detectors/index:module-toolbox_scs.detectors' on page 165 undefined on input line 21983 Reference `autoapi/toolbox_scs/detectors/pes/index:module-toolbox_scs.detectors.pes' on page 165 undefined on input line 21994 Reference `autoapi/toolbox_scs/detectors/viking/index:module-toolbox_scs.detectors.viking' on page 165 undefined on input line 21995 Reference `autoapi/toolbox_scs/detectors/xgm/index:module-toolbox_scs.detectors.xgm' on page 165 undefined on input line 21996 Reference `autoapi/toolbox_scs/index:module-toolbox_scs' on page 165 undefined on input line 21977 Reference `autoapi/toolbox_scs/load/index:module-toolbox_scs.load' on page 165 undefined on input line 21997 Reference `autoapi/toolbox_scs/misc/bunch_pattern/index:module-toolbox_scs.misc.bunch_pattern' on page 165 undefined on input line 21999 Reference `autoapi/toolbox_scs/misc/bunch_pattern_external/index:module-toolbox_scs.misc.bunch_pattern_external' on page 165 undefined on input line 22000 Reference `autoapi/toolbox_scs/misc/index:module-toolbox_scs.misc' on page 165 undefined on input line 21998 Reference `autoapi/toolbox_scs/misc/laser_utils/index:module-toolbox_scs.misc.laser_utils' on page 165 undefined on input line 22001 Reference `autoapi/toolbox_scs/misc/undulator/index:module-toolbox_scs.misc.undulator' on page 165 undefined on input line 22002 Reference `autoapi/toolbox_scs/mnemonics_machinery/index:module-toolbox_scs.mnemonics_machinery' on page 165 undefined on input line 22003 Reference `autoapi/toolbox_scs/routines/Reflectivity/index:module-toolbox_scs.routines.Reflectivity' on page 165 undefined on input line 22007 Reference `autoapi/toolbox_scs/routines/XAS/index:module-toolbox_scs.routines.XAS' on page 165 undefined on input line 22008 Reference `autoapi/toolbox_scs/routines/boz/index:module-toolbox_scs.routines.boz' on page 165 undefined on input line 22005 Reference `autoapi/toolbox_scs/routines/index:module-toolbox_scs.routines' on page 165 undefined on input line 22004 Reference `autoapi/toolbox_scs/routines/knife_edge/index:module-toolbox_scs.routines.knife_edge' on page 165 undefined on input line 22006 Reference `autoapi/toolbox_scs/test/index:module-toolbox_scs.test' on page 165 undefined on input line 22009 Reference `autoapi/toolbox_scs/test/test_dssc_cls/index:module-toolbox_scs.test.test_dssc_cls' on page 165 undefined on input line 22010 Reference `autoapi/toolbox_scs/test/test_hrixs/index:module-toolbox_scs.test.test_hrixs' on page 165 undefined on input line 22011 Reference `autoapi/toolbox_scs/test/test_misc/index:module-toolbox_scs.test.test_misc' on page 165 undefined on input line 22012 Reference `autoapi/toolbox_scs/test/test_top_level/index:module-toolbox_scs.test.test_top_level' on page 165 undefined on input line 22013 Reference `autoapi/toolbox_scs/test/test_utils/index:module-toolbox_scs.test.test_utils' on page 165 undefined on input line 22014 Reference `autoapi/toolbox_scs/util/exceptions/index:module-toolbox_scs.util.exceptions' on page 165 undefined on input line 22016 Reference `autoapi/toolbox_scs/util/index:module-toolbox_scs.util' on page 165 undefined on input line 22015 Reference `autoapi/toolbox_scs/util/pkg/index:module-toolbox_scs.util.pkg' on page 165 undefined on input line 22017 Latexmk: Summary of warnings: Latex failed to resolve 42 reference(s) Rule 'makeindex scs-toolbox.idx': File changes, etc: Non-existent destination files: 'scs-toolbox.ind' ------------ Run number 1 of rule 'makeindex scs-toolbox.idx' ------------ ------------ Running 'makeindex -s python.ist -o "scs-toolbox.ind" "scs-toolbox.idx"' ------------ Latexmk: applying rule 'makeindex scs-toolbox.idx'... This is makeindex, version 2.15 [TeX Live 2017] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file scs-toolbox.idx....done (715 entries accepted, 0 rejected). Sorting entries........done (7458 comparisons). Generating output file scs-toolbox.ind....done (1071 lines written, 0 warnings). Output written in scs-toolbox.ind. Transcript written in scs-toolbox.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'scs-toolbox.aux' 'scs-toolbox.ind' ------------ Run number 2 of rule 'pdflatex' ------------ Latexmk: applying rule 'pdflatex'... ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="scs-toolbox" "SCSToolbox.tex"' ------------ This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./SCSToolbox.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (./sphinxlatexgraphics.sty) (./sphinxpackageboxes.sty) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty)) (./sphinxlatexnumfig.sty (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty)) (./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (./nbsphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file scs-toolbox.idx (./scs-toolbox.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./scs-toolbox.out) (./scs-toolbox.out) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./scs-toolbox.toc) [1] [2] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [1] [2] Chapter 2. [3 <./metadata.png>] [4] Chapter 3. (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) [5] [6] [7] [8] [9] [10] [11 <./sview.png>] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] Underfull \hbox (badness 10000) in paragraph at lines 2192--2192 []|[][]\T1/txtt/m/sl/10 check_peak_params[][]\T1/qtm/m/n/10 (run, mnemonic[, ra w_trace, Underfull \hbox (badness 10000) in paragraph at lines 2192--2192 []|[][]\T1/txtt/m/sl/10 get_digitizer_peaks[][]\T1/qtm/m/n/10 (run[, mnemon-ics , Underfull \hbox (badness 10000) in paragraph at lines 2192--2192 []|[][]\T1/txtt/m/sl/10 check_peak_params[][]\T1/qtm/m/n/10 (run, mnemonic[, ra w_trace, Underfull \hbox (badness 10000) in paragraph at lines 2192--2192 []|[][]\T1/txtt/m/sl/10 get_digitizer_peaks[][]\T1/qtm/m/n/10 (run[, mnemon-ics , [22] [23] [24] [25] [26] [27] [28] [29] Underfull \hbox (badness 10000) in paragraph at lines 3247--3247 []|[][]\T1/txtt/m/sl/10 get_xgm_formatted[][]\T1/qtm/m/n/10 (run_obj, xgm_name, Underfull \hbox (badness 10000) in paragraph at lines 3247--3247 []|[][]\T1/txtt/m/sl/10 get_xgm_formatted[][]\T1/qtm/m/n/10 (run_obj, xgm_name, [30] [31] Underfull \hbox (badness 5817) in paragraph at lines 3498--3498 []|[][]\T1/txtt/m/sl/10 plot_xgm_threshold[][]\T1/qtm/m/n/10 (xgm[, xgm_min, xg m_max, Underfull \hbox (badness 5817) in paragraph at lines 3498--3498 []|[][]\T1/txtt/m/sl/10 plot_xgm_threshold[][]\T1/qtm/m/n/10 (xgm[, xgm_min, xg m_max, [32] Underfull \hbox (badness 10000) in paragraph at lines 3570--3570 []|[][]\T1/txtt/m/sl/10 process_dssc_data[][]\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, Underfull \hbox (badness 10000) in paragraph at lines 3570--3570 []|[][]\T1/txtt/m/sl/10 process_dssc_data[][]\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|[][]\T1/txtt/m/sl/10 check_peak_params[][]\T1/qtm/m/n/10 (run, mnemonic[, ra w_trace, Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|[][]\T1/txtt/m/sl/10 get_digitizer_peaks[][]\T1/qtm/m/n/10 (run[, mnemon-ics , Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|[][]\T1/txtt/m/sl/10 get_xgm_formatted[][]\T1/qtm/m/n/10 (run_obj, xgm_name, Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|[][]\T1/txtt/m/sl/10 process_dssc_data[][]\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|[][]\T1/txtt/m/sl/10 check_peak_params[][]\T1/qtm/m/n/10 (run, mnemonic[, ra w_trace, Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|[][]\T1/txtt/m/sl/10 get_digitizer_peaks[][]\T1/qtm/m/n/10 (run[, mnemon-ics , Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|[][]\T1/txtt/m/sl/10 get_xgm_formatted[][]\T1/qtm/m/n/10 (run_obj, xgm_name, Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|[][]\T1/txtt/m/sl/10 process_dssc_data[][]\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 8683--8683 []|[][]\T1/txtt/m/sl/10 get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, Underfull \hbox (badness 10000) in paragraph at lines 8683--8683 []|[][]\T1/txtt/m/sl/10 get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, [69] [70] [71] Underfull \hbox (badness 10000) in paragraph at lines 9106--9106 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, Underfull \hbox (badness 10000) in paragraph at lines 9106--9106 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, [72] [73] Underfull \hbox (badness 10000) in paragraph at lines 9517--9517 []|[][]\T1/txtt/m/sl/10 get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, Underfull \hbox (badness 10000) in paragraph at lines 9517--9517 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, Underfull \hbox (badness 10000) in paragraph at lines 9517--9517 []|[][]\T1/txtt/m/sl/10 get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, Underfull \hbox (badness 10000) in paragraph at lines 9517--9517 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, [74] [75] [76] [77] [78] [79] [80] [81] Underfull \hbox (badness 10000) in paragraph at lines 10642--10642 []|[][]\T1/txtt/m/sl/10 inspect_histogram[][]\T1/qtm/m/n/10 (arr[, arr_dark, ma sk, ex- Underfull \hbox (badness 10000) in paragraph at lines 10642--10642 []|[][]\T1/txtt/m/sl/10 compute_flat_field_correction[][]\T1/qtm/m/n/10 (rois, params[, Underfull \hbox (badness 7362) in paragraph at lines 10642--10642 []|[][]\T1/txtt/m/sl/10 process[][]\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, mask, Underfull \hbox (badness 10000) in paragraph at lines 10642--10642 []|[][]\T1/txtt/m/sl/10 inspect_histogram[][]\T1/qtm/m/n/10 (arr[, arr_dark, ma sk, ex- Underfull \hbox (badness 10000) in paragraph at lines 10642--10642 []|[][]\T1/txtt/m/sl/10 compute_flat_field_correction[][]\T1/qtm/m/n/10 (rois, params[, Underfull \hbox (badness 7362) in paragraph at lines 10642--10642 []|[][]\T1/txtt/m/sl/10 process[][]\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, mask, [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] Underfull \hbox (badness 10000) in paragraph at lines 12063--12065 []|[][]\T1/txtt/m/sl/10 inspect_histogram[][]\T1/qtm/m/n/10 (arr[, arr_dark, ma sk, ex- Underfull \hbox (badness 10000) in paragraph at lines 12091--12093 []|[][]\T1/txtt/m/sl/10 compute_flat_field_correction[][]\T1/qtm/m/n/10 (rois, params[, Underfull \hbox (badness 7362) in paragraph at lines 12231--12233 []|[][]\T1/txtt/m/sl/10 process[][]\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, mask, [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] Underfull \hbox (badness 5970) in paragraph at lines 15459--15462 []\T1/txtt/bx/n/10 extract_bam \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 bool\T1/qtm/m/n /10 ) ^^U If True, ex-tracts the val-ues from BAM vari-ables (e.g. [118] [119] [120] [121] Underfull \hbox (badness 10000) in paragraph at lines 16028--16030 []|[][]\T1/txtt/m/sl/10 check_peak_params[][]\T1/qtm/m/n/10 (run, mnemonic[, ra w_trace, Underfull \hbox (badness 10000) in paragraph at lines 16035--16037 []|[][]\T1/txtt/m/sl/10 get_digitizer_peaks[][]\T1/qtm/m/n/10 (run[, mnemon-ics , Underfull \hbox (badness 10000) in paragraph at lines 16112--16114 []|[][]\T1/txtt/m/sl/10 get_xgm_formatted[][]\T1/qtm/m/n/10 (run_obj, xgm_name, Underfull \hbox (badness 10000) in paragraph at lines 16140--16142 []|[][]\T1/txtt/m/sl/10 process_dssc_data[][]\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, Underfull \hbox (badness 10000) in paragraph at lines 16238--16240 []|[][]\T1/txtt/m/sl/10 get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, [122] Underfull \hbox (badness 10000) in paragraph at lines 16315--16317 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, Underfull \hbox (badness 10000) in paragraph at lines 16385--16387 []|[][]\T1/txtt/m/sl/10 inspect_histogram[][]\T1/qtm/m/n/10 (arr[, arr_dark, ma sk, ex- Underfull \hbox (badness 10000) in paragraph at lines 16413--16415 []|[][]\T1/txtt/m/sl/10 compute_flat_field_correction[][]\T1/qtm/m/n/10 (rois, params[, Underfull \hbox (badness 7362) in paragraph at lines 16553--16555 []|[][]\T1/txtt/m/sl/10 process[][]\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, mask, [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] Underfull \hbox (badness 5970) in paragraph at lines 19643--19646 []\T1/txtt/bx/n/10 extract_bam \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 bool\T1/qtm/m/n /10 ) ^^U If True, ex-tracts the val-ues from BAM vari-ables (e.g. [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] Underfull \hbox (badness 10000) in paragraph at lines 21984--21985 []\T1/txtt/m/n/10 toolbox_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 , [165] (./scs-toolbox.ind [166] Overfull \hbox (82.43233pt too wide) in paragraph at lines 18--20 []\T1/txtt/m/n/10 __call__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/txtt/m/n/10 __del__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/txtt/m/n/10 __del__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 27--29 []\T1/txtt/m/n/10 __str__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.boz.parameters Underfull \hbox (badness 5519) in paragraph at lines 29--30 []\T1/txtt/m/n/10 __str__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 31--33 []\T1/txtt/m/n/10 _bin_metadata() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. detectors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 33--35 []\T1/txtt/m/n/10 _bin_metadata() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 33--35 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 37--39 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 37--39 \T1/qtm/m/it/10 box_scs.AzimuthalIntegratorDSSC method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 39--41 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 39--41 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 41--43 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 41--43 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegratorDSSC Underfull \hbox (badness 10000) in paragraph at lines 43--45 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (49.47249pt too wide) in paragraph at lines 43--45 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 45--47 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (73.36249pt too wide) in paragraph at lines 45--47 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegratorDSSC Underfull \hbox (badness 10000) in paragraph at lines 47--49 []\T1/txtt/m/n/10 _calc_indices() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 49--51 []\T1/txtt/m/n/10 _calc_indices() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 49--51 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 51--53 []\T1/txtt/m/n/10 _calc_indices() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (49.47249pt too wide) in paragraph at lines 51--53 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 55--57 []\T1/txtt/m/n/10 _calc_polar_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 55--57 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 57--59 []\T1/txtt/m/n/10 _calc_polar_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (49.47249pt too wide) in paragraph at lines 57--59 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 62--64 []\T1/txtt/m/n/10 _centroid_ed_map() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 62--64 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 65--67 []\T1/txtt/m/n/10 _centroid_map() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. detectors.MaranaX Underfull \hbox (badness 10000) in paragraph at lines 67--69 []\T1/txtt/m/n/10 _centroid_map() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 67--69 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 69--70 []\T1/txtt/m/n/10 _centroid_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 70--72 []\T1/txtt/m/n/10 _centroid_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .detectors.MaranaX Underfull \hbox (badness 10000) in paragraph at lines 72--74 []\T1/txtt/m/n/10 _centroid_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 72--74 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), [167] Underfull \hbox (badness 10000) in paragraph at lines 77--79 []\T1/txtt/m/n/10 _centroid_tb_map() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 77--79 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 5189) in paragraph at lines 79--80 []\T1/txtt/m/n/10 _histogram_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_sc s.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 80--82 []\T1/txtt/m/n/10 _histogram_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_sc s.detectors.MaranaX Underfull \hbox (badness 10000) in paragraph at lines 82--84 []\T1/txtt/m/n/10 _histogram_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 82--84 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 84--86 []\T1/txtt/m/n/10 _mnemo_to_prop() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .MaranaX static Underfull \hbox (badness 10000) in paragraph at lines 86--88 []\T1/txtt/m/n/10 _mnemo_to_prop() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .detectors.MaranaX Underfull \hbox (badness 10000) in paragraph at lines 88--90 []\T1/txtt/m/n/10 _mnemo_to_prop() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 88--90 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX static Underfull \hbox (badness 10000) in paragraph at lines 92--94 []\T1/txtt/m/n/10 _with_values() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule too l- Underfull \hbox (badness 10000) in paragraph at lines 97--99 []\T1/txtt/m/n/10 add_attributes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 97--99 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 99--101 []\T1/txtt/m/n/10 add_attributes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 99--101 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 101--102 []\T1/txtt/m/n/10 add_attributes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 104--105 []\T1/txtt/m/n/10 add_binner() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 106--108 []\T1/txtt/m/n/10 add_dataArray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 106--108 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 108--110 []\T1/txtt/m/n/10 add_dataArray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 108--110 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 110--111 []\T1/txtt/m/n/10 add_dataArray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 112--113 []\T1/txtt/m/n/10 aggregate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 115--117 []\T1/txtt/m/n/10 aggregate_ds() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.hrixs.hRIXS Underfull \hbox (badness 5475) in paragraph at lines 118--119 []\T1/txtt/m/n/10 aggregator() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 119--120 []\T1/txtt/m/n/10 aggregator() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/txtt/m/n/10 aggregators \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS at- Underfull \hbox (badness 10000) in paragraph at lines 127--129 []\T1/txtt/m/n/10 align_ol_to_fel_pId() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 131--132 []\T1/txtt/m/n/10 average_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 136--138 []\T1/txtt/m/n/10 AzimuthalIntegrator \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in tool- Underfull \hbox (badness 10000) in paragraph at lines 136--138 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 139--141 []\T1/txtt/m/n/10 AzimuthalIntegratorDSSC \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in tool- Underfull \hbox (badness 10000) in paragraph at lines 141--143 []\T1/txtt/m/n/10 AzimuthalIntegratorDSSC \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in tool- Underfull \hbox (badness 10000) in paragraph at lines 141--143 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 149--150 []\T1/txtt/m/n/10 binning() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.fccd.FastCCD Underfull \hbox (badness 5985) in paragraph at lines 153--154 []\T1/txtt/m/n/10 BL_POLY_DEG \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.Viking at-tribute\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 154--156 []\T1/txtt/m/n/10 BL_POLY_DEG \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 157--159 []\T1/txtt/m/n/10 BL_SIGNAL_RANGE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. detectors.Viking at- [168] Underfull \hbox (badness 10000) in paragraph at lines 165--166 []\T1/txtt/m/n/10 calc_q() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.Azimuth alIntegrator method\T1/qtm/m/n/10 ), Overfull \hbox (71.93236pt too wide) in paragraph at lines 166--168 []\T1/txtt/m/n/10 calc_q() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detecto rs.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 168--170 []\T1/txtt/m/n/10 calc_q() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detecto rs.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 171--173 []\T1/txtt/m/n/10 calibrate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 176--177 []\T1/txtt/m/n/10 calibrate_xgm() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Underfull \hbox (badness 10000) in paragraph at lines 178--179 []\T1/txtt/m/n/10 centroid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 179--180 []\T1/txtt/m/n/10 centroid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.hrixs.MaranaX Underfull \hbox (badness 10000) in paragraph at lines 183--185 []\T1/txtt/m/n/10 centroid_from_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 183--185 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 185--187 []\T1/txtt/m/n/10 centroid_from_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 189--191 []\T1/txtt/m/n/10 centroid_one() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 193--195 []\T1/txtt/m/n/10 centroid_two() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 199--200 []\T1/txtt/m/n/10 check_peak_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 200--202 []\T1/txtt/m/n/10 check_peak_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 202--204 []\T1/txtt/m/n/10 cleanup_tmp_dir() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 204--206 []\T1/txtt/m/n/10 collect_fastccd_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 204--206 \T1/qtm/m/it/10 box_scs.detectors.fccd.FastCCD method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 206--208 []\T1/txtt/m/n/10 combine_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 206--208 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 208--210 []\T1/txtt/m/n/10 combine_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 208--210 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 210--211 []\T1/txtt/m/n/10 combine_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 220--221 []\T1/txtt/m/n/10 create_dssc_bins() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 221--223 []\T1/txtt/m/n/10 create_dssc_bins() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 223--225 []\T1/txtt/m/n/10 create_pulsemask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 223--225 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 225--227 []\T1/txtt/m/n/10 create_pulsemask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 225--227 \T1/qtm/m/it/10 box_scs.detectors.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 227--228 []\T1/txtt/m/n/10 create_pulsemask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_s cs.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 233--235 []\T1/txtt/m/n/10 dask_load_persistently() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool - Underfull \hbox (badness 10000) in paragraph at lines 233--235 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 235--237 []\T1/txtt/m/n/10 dask_load_persistently() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool - Underfull \hbox (badness 10000) in paragraph at lines 241--243 []\T1/txtt/m/n/10 define_scan() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.de tectors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 245--247 []\T1/txtt/m/n/10 degToRelPower() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Underfull \hbox (badness 10000) in paragraph at lines 249--251 []\T1/txtt/m/n/10 delayToPosition() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- [169] Underfull \hbox (badness 10000) in paragraph at lines 254--256 []\T1/txtt/m/n/10 DETECTOR_FIELDS \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. detectors.hRIXS at- Underfull \hbox (badness 10000) in paragraph at lines 256--258 []\T1/txtt/m/n/10 DETECTOR_FIELDS \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. detectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 275--277 []\T1/txtt/m/n/10 e_per_counts() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 284--286 []\T1/txtt/m/n/10 extractBunchPattern() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 292--293 []\T1/txtt/m/n/10 ff_refine_crit() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 302--303 []\T1/txtt/m/n/10 find_curvature() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .detectors.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 310--312 []\T1/txtt/m/n/10 find_rois_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 312--314 []\T1/txtt/m/n/10 find_rois_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 316--317 []\T1/txtt/m/n/10 flat_field_guess() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_s cs.parameters Underfull \hbox (badness 10000) in paragraph at lines 317--319 []\T1/txtt/m/n/10 flat_field_guess() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 317--319 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 323--325 []\T1/txtt/m/n/10 fluenceCalibration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 326--327 []\T1/txtt/m/n/10 from_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 328--330 []\T1/txtt/m/n/10 from_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 339--341 []\T1/txtt/m/n/10 get_bam() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 343--345 []\T1/txtt/m/n/10 get_bam_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 345--347 []\T1/txtt/m/n/10 get_camera_gain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_sc s.detectors.Viking [170] Underfull \hbox (badness 10000) in paragraph at lines 347--349 []\T1/txtt/m/n/10 get_camera_gain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 347--349 \T1/qtm/m/it/10 box_scs.detectors.viking.Viking method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 350--352 []\T1/txtt/m/n/10 get_camera_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_ scs.detectors.Viking Underfull \hbox (badness 10000) in paragraph at lines 352--354 []\T1/txtt/m/n/10 get_camera_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 352--354 \T1/qtm/m/it/10 box_scs.detectors.viking.Viking method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 354--355 []\T1/txtt/m/n/10 get_camera_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_ scs.Viking method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 356--358 []\T1/txtt/m/n/10 get_data_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 358--360 []\T1/txtt/m/n/10 get_data_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 361--363 []\T1/txtt/m/n/10 get_dig_avg_trace() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 363--365 []\T1/txtt/m/n/10 get_dig_avg_trace() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 366--368 []\T1/txtt/m/n/10 get_digitizer_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 368--370 []\T1/txtt/m/n/10 get_digitizer_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 371--373 []\T1/txtt/m/n/10 get_flat_field() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 371--373 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 373--375 []\T1/txtt/m/n/10 get_flat_field() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .routines.parameters Underfull \hbox (badness 10000) in paragraph at lines 376--377 []\T1/txtt/m/n/10 get_Fnl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.boz.parameters Underfull \hbox (badness 5519) in paragraph at lines 377--378 []\T1/txtt/m/n/10 get_Fnl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 378--380 []\T1/txtt/m/n/10 get_info() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 380--381 []\T1/txtt/m/n/10 get_info() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 384--386 []\T1/txtt/m/n/10 get_laser_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 387--389 []\T1/txtt/m/n/10 get_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routi nes.boz.parameters Underfull \hbox (badness 6220) in paragraph at lines 391--393 []\T1/txtt/m/n/10 get_mask_idx() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.r outines.boz.parameters Underfull \hbox (badness 10000) in paragraph at lines 393--395 []\T1/txtt/m/n/10 get_mask_idx() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.r outines.parameters Underfull \hbox (badness 5475) in paragraph at lines 395--396 []\T1/txtt/m/n/10 get_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 396--398 []\T1/txtt/m/n/10 get_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 399--401 []\T1/txtt/m/n/10 get_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 405--407 []\T1/txtt/m/n/10 get_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 409--411 []\T1/txtt/m/n/10 get_pes_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 415--416 []\T1/txtt/m/n/10 get_roi_pixel_pos() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 416--418 []\T1/txtt/m/n/10 get_roi_pixel_pos() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 420--422 []\T1/txtt/m/n/10 get_sase_pId() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule too l- Underfull \hbox (badness 10000) in paragraph at lines 422--424 []\T1/txtt/m/n/10 get_tim_binned() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 422--424 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 429--431 []\T1/txtt/m/n/10 get_tim_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Underfull \hbox (badness 10000) in paragraph at lines 432--433 []\T1/txtt/m/n/10 get_undulator_config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- Underfull \hbox (badness 10000) in paragraph at lines 433--435 []\T1/txtt/m/n/10 get_undulator_config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- [171] Underfull \hbox (badness 10000) in paragraph at lines 439--441 []\T1/txtt/m/n/10 get_xgm_binned() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 439--441 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 445--446 []\T1/txtt/m/n/10 get_xgm_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 446--448 []\T1/txtt/m/n/10 get_xgm_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 453--455 []\T1/txtt/m/n/10 histogram_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 462--463 []\T1/txtt/m/n/10 inspect_correction() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 463--465 []\T1/txtt/m/n/10 inspect_correction() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 466--468 []\T1/txtt/m/n/10 inspect_correction_sk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 468--470 []\T1/txtt/m/n/10 inspect_correction_sk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 473--474 []\T1/txtt/m/n/10 inspect_flat_field_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 474--476 []\T1/txtt/m/n/10 inspect_flat_field_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 476--478 []\T1/txtt/m/n/10 inspect_flat_field_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 482--483 []\T1/txtt/m/n/10 inspect_histogram() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 483--485 []\T1/txtt/m/n/10 inspect_histogram() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 487--488 []\T1/txtt/m/n/10 inspect_nl_fit() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 489--491 []\T1/txtt/m/n/10 inspect_plane_fitting() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 491--493 []\T1/txtt/m/n/10 inspect_plane_fitting() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 497--498 []\T1/txtt/m/n/10 inspect_saturation() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 498--500 []\T1/txtt/m/n/10 inspect_saturation() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 501--502 []\T1/txtt/m/n/10 integrate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 503--505 []\T1/txtt/m/n/10 integrate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 509--511 []\T1/txtt/m/n/10 is_ppl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 513--515 []\T1/txtt/m/n/10 is_pulse_at() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 517--519 []\T1/txtt/m/n/10 is_sase_1() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 521--523 []\T1/txtt/m/n/10 is_sase_3() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- [172] Underfull \hbox (badness 10000) in paragraph at lines 530--532 []\T1/txtt/m/n/10 knife_edge() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 533--535 []\T1/txtt/m/n/10 knife_edge_base() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 538--540 []\T1/txtt/m/n/10 list_suites() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 541--543 []\T1/txtt/m/n/10 list_suites() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 548--550 []\T1/txtt/m/n/10 load() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routines. boz.parameters class Underfull \hbox (badness 10000) in paragraph at lines 551--553 []\T1/txtt/m/n/10 load_binned() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.de tectors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 554--555 []\T1/txtt/m/n/10 load_dark() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 556--558 []\T1/txtt/m/n/10 load_dark() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 562--564 []\T1/txtt/m/n/10 load_dssc_info() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 566--568 []\T1/txtt/m/n/10 load_dssc_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 568--570 []\T1/txtt/m/n/10 load_gain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 572--574 []\T1/txtt/m/n/10 load_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 574--576 []\T1/txtt/m/n/10 load_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 578--580 []\T1/txtt/m/n/10 load_tim() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 580--581 []\T1/txtt/m/n/10 load_tim() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 584--586 []\T1/txtt/m/n/10 load_xarray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 586--588 []\T1/txtt/m/n/10 load_xgm() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 588--589 []\T1/txtt/m/n/10 load_xgm() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 605--607 []\T1/txtt/m/n/10 mnemonics_for_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 612--613 []| \T1/txtt/m/n/10 toolbox_scs.base.tests.test_knife_edge\T1/qtm/m/n/10 , Overfull \hbox (13.12186pt too wide) in paragraph at lines 615--616 []| \T1/txtt/m/n/10 toolbox_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 , [173] Underfull \hbox (badness 10000) in paragraph at lines 631--632 []| \T1/txtt/m/n/10 toolbox_scs.misc.bunch_pattern_external\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 668--669 []\T1/txtt/m/n/10 normalize() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 672--674 []\T1/txtt/m/n/10 npulses_has_changed() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 676--678 []\T1/txtt/m/n/10 NUM_MAX_HITS \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.MaranaX at- Underfull \hbox (badness 10000) in paragraph at lines 684--685 []\T1/txtt/m/n/10 open_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 689--690 []\T1/txtt/m/n/10 parabola() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 702--704 []\T1/txtt/m/n/10 plane_fitting_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- Underfull \hbox (badness 10000) in paragraph at lines 704--706 []\T1/txtt/m/n/10 plane_fitting_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- Underfull \hbox (badness 10000) in paragraph at lines 706--708 []\T1/txtt/m/n/10 plot_azimuthal_int() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 706--708 \T1/qtm/m/it/10 box_scs.detectors.fccd.FastCCD method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 708--710 []\T1/txtt/m/n/10 plot_azimuthal_line_cut() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 too l- Underfull \hbox (badness 10000) in paragraph at lines 708--710 \T1/qtm/m/it/10 box_scs.detectors.fccd.FastCCD method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 710--712 []\T1/txtt/m/n/10 plot_binner() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 712--714 []\T1/txtt/m/n/10 plot_binner_hist() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 714--716 []\T1/txtt/m/n/10 plot_FastCCD() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 716--718 []\T1/txtt/m/n/10 plot_hist_processed() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 718--720 []\T1/txtt/m/n/10 plot_scan() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 722--724 []\T1/txtt/m/n/10 plot_xgm_threshold() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 726--728 []\T1/txtt/m/n/10 positionToDelay() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- [174] Underfull \hbox (badness 10000) in paragraph at lines 731--733 []\T1/txtt/m/n/10 process_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 731--733 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 733--735 []\T1/txtt/m/n/10 process_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 735--736 []\T1/txtt/m/n/10 process_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.D SSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 737--738 []\T1/txtt/m/n/10 process_dssc_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 738--740 []\T1/txtt/m/n/10 process_dssc_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 742--743 []\T1/txtt/m/n/10 process_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 743--745 []\T1/txtt/m/n/10 process_one_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 755--757 []\T1/txtt/m/n/10 pulsePatternInfo() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 761--763 []\T1/txtt/m/n/10 quickmask_DSSC_ASIC() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 763--765 []\T1/txtt/m/n/10 quickmask_DSSC_ASIC() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 770--772 []\T1/txtt/m/n/10 reflectivity() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule too l- Underfull \hbox (badness 7012) in paragraph at lines 772--774 []\T1/txtt/m/n/10 removePolyBaseline() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box _scs.detectors.Viking Underfull \hbox (badness 10000) in paragraph at lines 774--776 []\T1/txtt/m/n/10 removePolyBaseline() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 774--776 \T1/qtm/m/it/10 box_scs.detectors.viking.Viking method\T1/qtm/m/n/10 ), Underfull \hbox (badness 6188) in paragraph at lines 786--787 []\T1/txtt/m/n/10 save() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detectors .fccd.FastCCD method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 791--793 []\T1/txtt/m/n/10 save_attributes_h5() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 793--795 []\T1/txtt/m/n/10 save_attributes_h5() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 795--797 []\T1/txtt/m/n/10 save_formatted_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 795--797 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 797--799 []\T1/txtt/m/n/10 save_formatted_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 797--799 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 803--805 []\T1/txtt/m/n/10 save_xarray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 806--808 []\T1/txtt/m/n/10 set_flat_field() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 806--808 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 808--810 []\T1/txtt/m/n/10 set_flat_field() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .routines.parameters Underfull \hbox (badness 10000) in paragraph at lines 811--812 []\T1/txtt/m/n/10 set_Fnl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.boz.parameters Underfull \hbox (badness 5519) in paragraph at lines 812--813 []\T1/txtt/m/n/10 set_Fnl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 814--816 []\T1/txtt/m/n/10 set_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routi nes.boz.parameters Underfull \hbox (badness 5475) in paragraph at lines 817--818 []\T1/txtt/m/n/10 set_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 818--820 []\T1/txtt/m/n/10 set_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 821--823 []\T1/txtt/m/n/10 set_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.viking.Viking [175] Underfull \hbox (badness 10000) in paragraph at lines 825--827 []\T1/txtt/m/n/10 setUp() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.test.tes t_misc.TestDataAccess Underfull \hbox (badness 10000) in paragraph at lines 827--829 []\T1/txtt/m/n/10 setUp() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.test.tes t_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 829--831 []\T1/txtt/m/n/10 setUp() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.test.tes t_utils.TestDataAccess Underfull \hbox (badness 10000) in paragraph at lines 831--833 []\T1/txtt/m/n/10 setup_tmp_dir() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Overfull \hbox (5.7323pt too wide) in paragraph at lines 835--837 []\T1/txtt/m/n/10 setUpClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.tes t.test_misc.TestDataAccess Overfull \hbox (8.28223pt too wide) in paragraph at lines 837--839 []\T1/txtt/m/n/10 setUpClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.tes t.test_top_level.TestToolbox Overfull \hbox (4.6323pt too wide) in paragraph at lines 839--841 []\T1/txtt/m/n/10 setUpClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.tes t.test_utils.TestDataAccess Underfull \hbox (badness 6526) in paragraph at lines 864--866 []\T1/txtt/m/n/10 tearDown() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.test. test_utils.TestDataAccess Underfull \hbox (badness 10000) in paragraph at lines 866--868 []\T1/txtt/m/n/10 tearDownClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 866--868 \T1/qtm/m/it/10 box_scs.test.test_dssc_cls.TestDSSC class Underfull \hbox (badness 10000) in paragraph at lines 868--870 []\T1/txtt/m/n/10 tearDownClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 868--870 \T1/qtm/m/it/10 box_scs.test.test_misc.TestDataAccess class Underfull \hbox (badness 10000) in paragraph at lines 870--872 []\T1/txtt/m/n/10 tearDownClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 870--872 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox class Underfull \hbox (badness 10000) in paragraph at lines 872--874 []\T1/txtt/m/n/10 tearDownClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 872--874 \T1/qtm/m/it/10 box_scs.test.test_utils.TestDataAccess class Underfull \hbox (badness 10000) in paragraph at lines 874--876 []\T1/txtt/m/n/10 test_centroid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 874--876 \T1/qtm/m/it/10 box_scs.test.test_hrixs.TestHRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 876--878 []\T1/txtt/m/n/10 test_constant() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 876--878 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox Overfull \hbox (2.86227pt too wide) in paragraph at lines 878--880 []\T1/txtt/m/n/10 test_create() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.te st.test_dssc_cls.TestDSSC Underfull \hbox (badness 10000) in paragraph at lines 880--882 []\T1/txtt/m/n/10 test_extractBunchPattern() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 to ol- Underfull \hbox (badness 10000) in paragraph at lines 882--884 []\T1/txtt/m/n/10 test_getparam() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 882--884 \T1/qtm/m/it/10 box_scs.test.test_hrixs.TestHRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 884--886 []\T1/txtt/m/n/10 test_integration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 884--886 \T1/qtm/m/it/10 box_scs.test.test_hrixs.TestHRIXS method\T1/qtm/m/n/10 ), Overfull \hbox (5.7323pt too wide) in paragraph at lines 886--888 []\T1/txtt/m/n/10 test_isppl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.tes t.test_misc.TestDataAccess Underfull \hbox (badness 10000) in paragraph at lines 888--890 []\T1/txtt/m/n/10 test_issase1() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 890--892 []\T1/txtt/m/n/10 test_issase3() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 892--894 []\T1/txtt/m/n/10 test_knife_edge_base() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- Overfull \hbox (3.03224pt too wide) in paragraph at lines 894--896 []\T1/txtt/m/n/10 test_load() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.test .test_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 896--898 []\T1/txtt/m/n/10 test_loadbinnedarray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 896--898 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 898--900 []\T1/txtt/m/n/10 test_normalization_all() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool - Underfull \hbox (badness 10000) in paragraph at lines 898--900 \T1/qtm/m/it/10 box_scs.test.test_dssc_cls.TestDSSC method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 900--902 []\T1/txtt/m/n/10 test_openrun() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 900--902 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 902--904 []\T1/txtt/m/n/10 test_openrunpath() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 902--904 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 904--906 []\T1/txtt/m/n/10 test_prepare_arrays_nans() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 906--908 []\T1/txtt/m/n/10 test_prepare_arrays_range() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 908--910 []\T1/txtt/m/n/10 test_prepare_arrays_size() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 910--912 []\T1/txtt/m/n/10 test_processing_quick() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 910--912 \T1/qtm/m/it/10 box_scs.test.test_dssc_cls.TestDSSC method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 912--914 []\T1/txtt/m/n/10 test_pulsePatternInfo() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- [176] Underfull \hbox (badness 10000) in paragraph at lines 914--916 []\T1/txtt/m/n/10 test_range_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 916--918 []\T1/txtt/m/n/10 test_rundir1() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 918--920 []\T1/txtt/m/n/10 test_rundir2() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 920--922 []\T1/txtt/m/n/10 test_rundir3() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 922--924 []\T1/txtt/m/n/10 test_use_xgm_tim() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 922--924 \T1/qtm/m/it/10 box_scs.test.test_dssc_cls.TestDSSC method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 931--932 []\T1/txtt/m/n/10 THRESHOLD \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.hrixs.hRIXS at- [177] Underfull \hbox (badness 10000) in paragraph at lines 1031--1032 []\T1/txtt/m/n/10 use_gpu() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.boz.parameters Underfull \hbox (badness 5519) in paragraph at lines 1032--1033 []\T1/txtt/m/n/10 use_gpu() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 1058--1060 []\T1/txtt/m/n/10 xgm_filter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.fccd.FastCCD [178]) (./scs-toolbox.aux) Package rerunfilecheck Warning: File `scs-toolbox.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}{ /usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on scs-toolbox.pdf (182 pages, 776867 bytes). Transcript written on scs-toolbox.log. Latexmk: Index file 'scs-toolbox.idx' was written Latexmk: References changed. Latexmk: Log file says output to 'scs-toolbox.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'scs-toolbox.aux' 'scs-toolbox.out' 'scs-toolbox.toc' ------------ Run number 3 of rule 'pdflatex' ------------ Latexmk: applying rule 'pdflatex'... ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="scs-toolbox" "SCSToolbox.tex"' ------------ This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./SCSToolbox.tex LaTeX2e <2017-04-15> Babel <3.18> and hyphenation patterns for 84 language(s) loaded. (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (./sphinxlatexgraphics.sty) (./sphinxpackageboxes.sty) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz)) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty)) (./sphinxlatexnumfig.sty (/usr/share/texlive/texmf-dist/tex/latex/carlisle/remreset.sty)) (./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (./nbsphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file scs-toolbox.idx (./scs-toolbox.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./scs-toolbox.out) (./scs-toolbox.out) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./scs-toolbox.toc) [1] [2] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [1] [2] Chapter 2. [3 <./metadata.png>] [4] Chapter 3. (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) [5] [6] [7] [8] [9] [10] [11 <./sview.png>] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] Underfull \hbox (badness 10000) in paragraph at lines 2192--2192 []|[][]\T1/txtt/m/sl/10 check_peak_params[][]\T1/qtm/m/n/10 (run, mnemonic[, ra w_trace, Underfull \hbox (badness 10000) in paragraph at lines 2192--2192 []|[][]\T1/txtt/m/sl/10 get_digitizer_peaks[][]\T1/qtm/m/n/10 (run[, mnemon-ics , Underfull \hbox (badness 10000) in paragraph at lines 2192--2192 []|[][]\T1/txtt/m/sl/10 check_peak_params[][]\T1/qtm/m/n/10 (run, mnemonic[, ra w_trace, Underfull \hbox (badness 10000) in paragraph at lines 2192--2192 []|[][]\T1/txtt/m/sl/10 get_digitizer_peaks[][]\T1/qtm/m/n/10 (run[, mnemon-ics , [22] [23] [24] [25] [26] [27] [28] [29] Underfull \hbox (badness 10000) in paragraph at lines 3247--3247 []|[][]\T1/txtt/m/sl/10 get_xgm_formatted[][]\T1/qtm/m/n/10 (run_obj, xgm_name, Underfull \hbox (badness 10000) in paragraph at lines 3247--3247 []|[][]\T1/txtt/m/sl/10 get_xgm_formatted[][]\T1/qtm/m/n/10 (run_obj, xgm_name, [30] [31] Underfull \hbox (badness 5817) in paragraph at lines 3498--3498 []|[][]\T1/txtt/m/sl/10 plot_xgm_threshold[][]\T1/qtm/m/n/10 (xgm[, xgm_min, xg m_max, Underfull \hbox (badness 5817) in paragraph at lines 3498--3498 []|[][]\T1/txtt/m/sl/10 plot_xgm_threshold[][]\T1/qtm/m/n/10 (xgm[, xgm_min, xg m_max, [32] Underfull \hbox (badness 10000) in paragraph at lines 3570--3570 []|[][]\T1/txtt/m/sl/10 process_dssc_data[][]\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, Underfull \hbox (badness 10000) in paragraph at lines 3570--3570 []|[][]\T1/txtt/m/sl/10 process_dssc_data[][]\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|[][]\T1/txtt/m/sl/10 check_peak_params[][]\T1/qtm/m/n/10 (run, mnemonic[, ra w_trace, Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|[][]\T1/txtt/m/sl/10 get_digitizer_peaks[][]\T1/qtm/m/n/10 (run[, mnemon-ics , Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|[][]\T1/txtt/m/sl/10 get_xgm_formatted[][]\T1/qtm/m/n/10 (run_obj, xgm_name, Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|[][]\T1/txtt/m/sl/10 process_dssc_data[][]\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|[][]\T1/txtt/m/sl/10 check_peak_params[][]\T1/qtm/m/n/10 (run, mnemonic[, ra w_trace, Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|[][]\T1/txtt/m/sl/10 get_digitizer_peaks[][]\T1/qtm/m/n/10 (run[, mnemon-ics , Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|[][]\T1/txtt/m/sl/10 get_xgm_formatted[][]\T1/qtm/m/n/10 (run_obj, xgm_name, Underfull \hbox (badness 10000) in paragraph at lines 5810--5810 []|[][]\T1/txtt/m/sl/10 process_dssc_data[][]\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 8683--8683 []|[][]\T1/txtt/m/sl/10 get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, Underfull \hbox (badness 10000) in paragraph at lines 8683--8683 []|[][]\T1/txtt/m/sl/10 get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, [69] [70] [71] Underfull \hbox (badness 10000) in paragraph at lines 9106--9106 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, Underfull \hbox (badness 10000) in paragraph at lines 9106--9106 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, [72] [73] Underfull \hbox (badness 10000) in paragraph at lines 9517--9517 []|[][]\T1/txtt/m/sl/10 get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, Underfull \hbox (badness 10000) in paragraph at lines 9517--9517 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, Underfull \hbox (badness 10000) in paragraph at lines 9517--9517 []|[][]\T1/txtt/m/sl/10 get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, Underfull \hbox (badness 10000) in paragraph at lines 9517--9517 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, [74] [75] [76] [77] [78] [79] [80] [81] Underfull \hbox (badness 10000) in paragraph at lines 10642--10642 []|[][]\T1/txtt/m/sl/10 inspect_histogram[][]\T1/qtm/m/n/10 (arr[, arr_dark, ma sk, ex- Underfull \hbox (badness 10000) in paragraph at lines 10642--10642 []|[][]\T1/txtt/m/sl/10 compute_flat_field_correction[][]\T1/qtm/m/n/10 (rois, params[, Underfull \hbox (badness 7362) in paragraph at lines 10642--10642 []|[][]\T1/txtt/m/sl/10 process[][]\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, mask, Underfull \hbox (badness 10000) in paragraph at lines 10642--10642 []|[][]\T1/txtt/m/sl/10 inspect_histogram[][]\T1/qtm/m/n/10 (arr[, arr_dark, ma sk, ex- Underfull \hbox (badness 10000) in paragraph at lines 10642--10642 []|[][]\T1/txtt/m/sl/10 compute_flat_field_correction[][]\T1/qtm/m/n/10 (rois, params[, Underfull \hbox (badness 7362) in paragraph at lines 10642--10642 []|[][]\T1/txtt/m/sl/10 process[][]\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, mask, [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] Underfull \hbox (badness 10000) in paragraph at lines 12063--12065 []|[][]\T1/txtt/m/sl/10 inspect_histogram[][]\T1/qtm/m/n/10 (arr[, arr_dark, ma sk, ex- Underfull \hbox (badness 10000) in paragraph at lines 12091--12093 []|[][]\T1/txtt/m/sl/10 compute_flat_field_correction[][]\T1/qtm/m/n/10 (rois, params[, Underfull \hbox (badness 7362) in paragraph at lines 12231--12233 []|[][]\T1/txtt/m/sl/10 process[][]\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, mask, [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] Underfull \hbox (badness 5970) in paragraph at lines 15459--15462 []\T1/txtt/bx/n/10 extract_bam \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 bool\T1/qtm/m/n /10 ) ^^U If True, ex-tracts the val-ues from BAM vari-ables (e.g. [118] [119] [120] [121] Underfull \hbox (badness 10000) in paragraph at lines 16028--16030 []|[][]\T1/txtt/m/sl/10 check_peak_params[][]\T1/qtm/m/n/10 (run, mnemonic[, ra w_trace, Underfull \hbox (badness 10000) in paragraph at lines 16035--16037 []|[][]\T1/txtt/m/sl/10 get_digitizer_peaks[][]\T1/qtm/m/n/10 (run[, mnemon-ics , Underfull \hbox (badness 10000) in paragraph at lines 16112--16114 []|[][]\T1/txtt/m/sl/10 get_xgm_formatted[][]\T1/qtm/m/n/10 (run_obj, xgm_name, Underfull \hbox (badness 10000) in paragraph at lines 16140--16142 []|[][]\T1/txtt/m/sl/10 process_dssc_data[][]\T1/qtm/m/n/10 (proposal, run_nr, mod-ule, Underfull \hbox (badness 10000) in paragraph at lines 16238--16240 []|[][]\T1/txtt/m/sl/10 get_sase_pId[][]\T1/qtm/m/n/10 (run[, loc, run_mnemonic s, bpt, [122] Underfull \hbox (badness 10000) in paragraph at lines 16315--16317 []|[][]\T1/txtt/m/sl/10 fluenceCalibration[][]\T1/qtm/m/n/10 (hwp, power_mW, np ulses, Underfull \hbox (badness 10000) in paragraph at lines 16385--16387 []|[][]\T1/txtt/m/sl/10 inspect_histogram[][]\T1/qtm/m/n/10 (arr[, arr_dark, ma sk, ex- Underfull \hbox (badness 10000) in paragraph at lines 16413--16415 []|[][]\T1/txtt/m/sl/10 compute_flat_field_correction[][]\T1/qtm/m/n/10 (rois, params[, Underfull \hbox (badness 7362) in paragraph at lines 16553--16555 []|[][]\T1/txtt/m/sl/10 process[][]\T1/qtm/m/n/10 (Fmodel, arr_dark, arr, tid, rois, mask, [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] Underfull \hbox (badness 5970) in paragraph at lines 19643--19646 []\T1/txtt/bx/n/10 extract_bam \T1/qtm/m/n/10 (\T1/txtt/m/sl/10 bool\T1/qtm/m/n /10 ) ^^U If True, ex-tracts the val-ues from BAM vari-ables (e.g. [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] Underfull \hbox (badness 10000) in paragraph at lines 21984--21985 []\T1/txtt/m/n/10 toolbox_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 , [165] (./scs-toolbox.ind [166] Overfull \hbox (82.43233pt too wide) in paragraph at lines 18--20 []\T1/txtt/m/n/10 __call__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/txtt/m/n/10 __del__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 24--26 []\T1/txtt/m/n/10 __del__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 27--29 []\T1/txtt/m/n/10 __str__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.boz.parameters Underfull \hbox (badness 5519) in paragraph at lines 29--30 []\T1/txtt/m/n/10 __str__() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 31--33 []\T1/txtt/m/n/10 _bin_metadata() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. detectors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 33--35 []\T1/txtt/m/n/10 _bin_metadata() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 33--35 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 37--39 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 37--39 \T1/qtm/m/it/10 box_scs.AzimuthalIntegratorDSSC method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 39--41 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 39--41 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 41--43 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 41--43 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegratorDSSC Underfull \hbox (badness 10000) in paragraph at lines 43--45 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (49.47249pt too wide) in paragraph at lines 43--45 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 45--47 []\T1/txtt/m/n/10 _calc_dist_array() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (73.36249pt too wide) in paragraph at lines 45--47 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegratorDSSC Underfull \hbox (badness 10000) in paragraph at lines 47--49 []\T1/txtt/m/n/10 _calc_indices() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 49--51 []\T1/txtt/m/n/10 _calc_indices() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 49--51 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 51--53 []\T1/txtt/m/n/10 _calc_indices() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (49.47249pt too wide) in paragraph at lines 51--53 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 55--57 []\T1/txtt/m/n/10 _calc_polar_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 55--57 \T1/qtm/m/it/10 box_scs.detectors.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 57--59 []\T1/txtt/m/n/10 _calc_polar_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Overfull \hbox (49.47249pt too wide) in paragraph at lines 57--59 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 62--64 []\T1/txtt/m/n/10 _centroid_ed_map() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 62--64 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 65--67 []\T1/txtt/m/n/10 _centroid_map() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. detectors.MaranaX Underfull \hbox (badness 10000) in paragraph at lines 67--69 []\T1/txtt/m/n/10 _centroid_map() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 67--69 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 69--70 []\T1/txtt/m/n/10 _centroid_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 70--72 []\T1/txtt/m/n/10 _centroid_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .detectors.MaranaX Underfull \hbox (badness 10000) in paragraph at lines 72--74 []\T1/txtt/m/n/10 _centroid_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 72--74 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), [167] Underfull \hbox (badness 10000) in paragraph at lines 77--79 []\T1/txtt/m/n/10 _centroid_tb_map() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 77--79 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 5189) in paragraph at lines 79--80 []\T1/txtt/m/n/10 _histogram_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_sc s.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 80--82 []\T1/txtt/m/n/10 _histogram_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_sc s.detectors.MaranaX Underfull \hbox (badness 10000) in paragraph at lines 82--84 []\T1/txtt/m/n/10 _histogram_task() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 82--84 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 84--86 []\T1/txtt/m/n/10 _mnemo_to_prop() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .MaranaX static Underfull \hbox (badness 10000) in paragraph at lines 86--88 []\T1/txtt/m/n/10 _mnemo_to_prop() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .detectors.MaranaX Underfull \hbox (badness 10000) in paragraph at lines 88--90 []\T1/txtt/m/n/10 _mnemo_to_prop() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 88--90 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX static Underfull \hbox (badness 10000) in paragraph at lines 92--94 []\T1/txtt/m/n/10 _with_values() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule too l- Underfull \hbox (badness 10000) in paragraph at lines 97--99 []\T1/txtt/m/n/10 add_attributes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 97--99 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 99--101 []\T1/txtt/m/n/10 add_attributes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 99--101 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 101--102 []\T1/txtt/m/n/10 add_attributes() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 104--105 []\T1/txtt/m/n/10 add_binner() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 106--108 []\T1/txtt/m/n/10 add_dataArray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 106--108 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 108--110 []\T1/txtt/m/n/10 add_dataArray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 108--110 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 110--111 []\T1/txtt/m/n/10 add_dataArray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 112--113 []\T1/txtt/m/n/10 aggregate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 115--117 []\T1/txtt/m/n/10 aggregate_ds() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.hrixs.hRIXS Underfull \hbox (badness 5475) in paragraph at lines 118--119 []\T1/txtt/m/n/10 aggregator() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 119--120 []\T1/txtt/m/n/10 aggregator() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 122--124 []\T1/txtt/m/n/10 aggregators \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS at- Underfull \hbox (badness 10000) in paragraph at lines 127--129 []\T1/txtt/m/n/10 align_ol_to_fel_pId() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 131--132 []\T1/txtt/m/n/10 average_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 136--138 []\T1/txtt/m/n/10 AzimuthalIntegrator \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in tool- Underfull \hbox (badness 10000) in paragraph at lines 136--138 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 139--141 []\T1/txtt/m/n/10 AzimuthalIntegratorDSSC \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in tool- Underfull \hbox (badness 10000) in paragraph at lines 141--143 []\T1/txtt/m/n/10 AzimuthalIntegratorDSSC \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in tool- Underfull \hbox (badness 10000) in paragraph at lines 141--143 \T1/qtm/m/it/10 box_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 149--150 []\T1/txtt/m/n/10 binning() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.fccd.FastCCD Underfull \hbox (badness 5985) in paragraph at lines 153--154 []\T1/txtt/m/n/10 BL_POLY_DEG \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.Viking at-tribute\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 154--156 []\T1/txtt/m/n/10 BL_POLY_DEG \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 157--159 []\T1/txtt/m/n/10 BL_SIGNAL_RANGE \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. detectors.Viking at- [168] Underfull \hbox (badness 10000) in paragraph at lines 165--166 []\T1/txtt/m/n/10 calc_q() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.Azimuth alIntegrator method\T1/qtm/m/n/10 ), Overfull \hbox (71.93236pt too wide) in paragraph at lines 166--168 []\T1/txtt/m/n/10 calc_q() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detecto rs.azimuthal_integrator.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 168--170 []\T1/txtt/m/n/10 calc_q() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detecto rs.AzimuthalIntegrator Underfull \hbox (badness 10000) in paragraph at lines 171--173 []\T1/txtt/m/n/10 calibrate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 176--177 []\T1/txtt/m/n/10 calibrate_xgm() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Underfull \hbox (badness 10000) in paragraph at lines 178--179 []\T1/txtt/m/n/10 centroid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 179--180 []\T1/txtt/m/n/10 centroid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.hrixs.MaranaX Underfull \hbox (badness 10000) in paragraph at lines 183--185 []\T1/txtt/m/n/10 centroid_from_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 183--185 \T1/qtm/m/it/10 box_scs.detectors.hrixs.MaranaX method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 185--187 []\T1/txtt/m/n/10 centroid_from_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 189--191 []\T1/txtt/m/n/10 centroid_one() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 193--195 []\T1/txtt/m/n/10 centroid_two() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 199--200 []\T1/txtt/m/n/10 check_peak_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 200--202 []\T1/txtt/m/n/10 check_peak_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 202--204 []\T1/txtt/m/n/10 cleanup_tmp_dir() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 204--206 []\T1/txtt/m/n/10 collect_fastccd_file() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 204--206 \T1/qtm/m/it/10 box_scs.detectors.fccd.FastCCD method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 206--208 []\T1/txtt/m/n/10 combine_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 206--208 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 208--210 []\T1/txtt/m/n/10 combine_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 208--210 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 210--211 []\T1/txtt/m/n/10 combine_files() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 220--221 []\T1/txtt/m/n/10 create_dssc_bins() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 221--223 []\T1/txtt/m/n/10 create_dssc_bins() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 223--225 []\T1/txtt/m/n/10 create_pulsemask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 223--225 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 225--227 []\T1/txtt/m/n/10 create_pulsemask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 225--227 \T1/qtm/m/it/10 box_scs.detectors.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 227--228 []\T1/txtt/m/n/10 create_pulsemask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_s cs.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 233--235 []\T1/txtt/m/n/10 dask_load_persistently() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool - Underfull \hbox (badness 10000) in paragraph at lines 233--235 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 235--237 []\T1/txtt/m/n/10 dask_load_persistently() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool - Underfull \hbox (badness 10000) in paragraph at lines 241--243 []\T1/txtt/m/n/10 define_scan() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.de tectors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 245--247 []\T1/txtt/m/n/10 degToRelPower() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Underfull \hbox (badness 10000) in paragraph at lines 249--251 []\T1/txtt/m/n/10 delayToPosition() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- [169] Underfull \hbox (badness 10000) in paragraph at lines 254--256 []\T1/txtt/m/n/10 DETECTOR_FIELDS \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. detectors.hRIXS at- Underfull \hbox (badness 10000) in paragraph at lines 256--258 []\T1/txtt/m/n/10 DETECTOR_FIELDS \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs. detectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 275--277 []\T1/txtt/m/n/10 e_per_counts() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 284--286 []\T1/txtt/m/n/10 extractBunchPattern() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 292--293 []\T1/txtt/m/n/10 ff_refine_crit() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 302--303 []\T1/txtt/m/n/10 find_curvature() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .detectors.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 310--312 []\T1/txtt/m/n/10 find_rois_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 312--314 []\T1/txtt/m/n/10 find_rois_from_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 316--317 []\T1/txtt/m/n/10 flat_field_guess() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_s cs.parameters Underfull \hbox (badness 10000) in paragraph at lines 317--319 []\T1/txtt/m/n/10 flat_field_guess() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 317--319 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 323--325 []\T1/txtt/m/n/10 fluenceCalibration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 326--327 []\T1/txtt/m/n/10 from_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 328--330 []\T1/txtt/m/n/10 from_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 339--341 []\T1/txtt/m/n/10 get_bam() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 343--345 []\T1/txtt/m/n/10 get_bam_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 345--347 []\T1/txtt/m/n/10 get_camera_gain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_sc s.detectors.Viking [170] Underfull \hbox (badness 10000) in paragraph at lines 347--349 []\T1/txtt/m/n/10 get_camera_gain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 347--349 \T1/qtm/m/it/10 box_scs.detectors.viking.Viking method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 350--352 []\T1/txtt/m/n/10 get_camera_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_ scs.detectors.Viking Underfull \hbox (badness 10000) in paragraph at lines 352--354 []\T1/txtt/m/n/10 get_camera_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 352--354 \T1/qtm/m/it/10 box_scs.detectors.viking.Viking method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 354--355 []\T1/txtt/m/n/10 get_camera_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_ scs.Viking method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 356--358 []\T1/txtt/m/n/10 get_data_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 358--360 []\T1/txtt/m/n/10 get_data_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 361--363 []\T1/txtt/m/n/10 get_dig_avg_trace() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 363--365 []\T1/txtt/m/n/10 get_dig_avg_trace() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 366--368 []\T1/txtt/m/n/10 get_digitizer_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 368--370 []\T1/txtt/m/n/10 get_digitizer_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 371--373 []\T1/txtt/m/n/10 get_flat_field() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 371--373 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 373--375 []\T1/txtt/m/n/10 get_flat_field() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .routines.parameters Underfull \hbox (badness 10000) in paragraph at lines 376--377 []\T1/txtt/m/n/10 get_Fnl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.boz.parameters Underfull \hbox (badness 5519) in paragraph at lines 377--378 []\T1/txtt/m/n/10 get_Fnl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 378--380 []\T1/txtt/m/n/10 get_info() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 380--381 []\T1/txtt/m/n/10 get_info() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 384--386 []\T1/txtt/m/n/10 get_laser_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 387--389 []\T1/txtt/m/n/10 get_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routi nes.boz.parameters Underfull \hbox (badness 6220) in paragraph at lines 391--393 []\T1/txtt/m/n/10 get_mask_idx() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.r outines.boz.parameters Underfull \hbox (badness 10000) in paragraph at lines 393--395 []\T1/txtt/m/n/10 get_mask_idx() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.r outines.parameters Underfull \hbox (badness 5475) in paragraph at lines 395--396 []\T1/txtt/m/n/10 get_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 396--398 []\T1/txtt/m/n/10 get_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 399--401 []\T1/txtt/m/n/10 get_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 405--407 []\T1/txtt/m/n/10 get_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 409--411 []\T1/txtt/m/n/10 get_pes_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 415--416 []\T1/txtt/m/n/10 get_roi_pixel_pos() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 416--418 []\T1/txtt/m/n/10 get_roi_pixel_pos() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 420--422 []\T1/txtt/m/n/10 get_sase_pId() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule too l- Underfull \hbox (badness 10000) in paragraph at lines 422--424 []\T1/txtt/m/n/10 get_tim_binned() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 422--424 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 429--431 []\T1/txtt/m/n/10 get_tim_peaks() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Underfull \hbox (badness 10000) in paragraph at lines 432--433 []\T1/txtt/m/n/10 get_undulator_config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- Underfull \hbox (badness 10000) in paragraph at lines 433--435 []\T1/txtt/m/n/10 get_undulator_config() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- [171] Underfull \hbox (badness 10000) in paragraph at lines 439--441 []\T1/txtt/m/n/10 get_xgm_binned() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 439--441 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 445--446 []\T1/txtt/m/n/10 get_xgm_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 446--448 []\T1/txtt/m/n/10 get_xgm_formatted() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 453--455 []\T1/txtt/m/n/10 histogram_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 462--463 []\T1/txtt/m/n/10 inspect_correction() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 463--465 []\T1/txtt/m/n/10 inspect_correction() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 466--468 []\T1/txtt/m/n/10 inspect_correction_sk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 468--470 []\T1/txtt/m/n/10 inspect_correction_sk() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 473--474 []\T1/txtt/m/n/10 inspect_flat_field_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 474--476 []\T1/txtt/m/n/10 inspect_flat_field_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 476--478 []\T1/txtt/m/n/10 inspect_flat_field_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 482--483 []\T1/txtt/m/n/10 inspect_histogram() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 483--485 []\T1/txtt/m/n/10 inspect_histogram() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 487--488 []\T1/txtt/m/n/10 inspect_nl_fit() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 489--491 []\T1/txtt/m/n/10 inspect_plane_fitting() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 491--493 []\T1/txtt/m/n/10 inspect_plane_fitting() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mo d-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 497--498 []\T1/txtt/m/n/10 inspect_saturation() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 498--500 []\T1/txtt/m/n/10 inspect_saturation() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 501--502 []\T1/txtt/m/n/10 integrate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 503--505 []\T1/txtt/m/n/10 integrate() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 509--511 []\T1/txtt/m/n/10 is_ppl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 513--515 []\T1/txtt/m/n/10 is_pulse_at() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 517--519 []\T1/txtt/m/n/10 is_sase_1() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 521--523 []\T1/txtt/m/n/10 is_sase_3() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- [172] Underfull \hbox (badness 10000) in paragraph at lines 530--532 []\T1/txtt/m/n/10 knife_edge() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 533--535 []\T1/txtt/m/n/10 knife_edge_base() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 538--540 []\T1/txtt/m/n/10 list_suites() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 541--543 []\T1/txtt/m/n/10 list_suites() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 548--550 []\T1/txtt/m/n/10 load() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routines. boz.parameters class Underfull \hbox (badness 10000) in paragraph at lines 551--553 []\T1/txtt/m/n/10 load_binned() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.de tectors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 554--555 []\T1/txtt/m/n/10 load_dark() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 556--558 []\T1/txtt/m/n/10 load_dark() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.viking.Viking Underfull \hbox (badness 10000) in paragraph at lines 562--564 []\T1/txtt/m/n/10 load_dssc_info() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 566--568 []\T1/txtt/m/n/10 load_dssc_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 568--570 []\T1/txtt/m/n/10 load_gain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 572--574 []\T1/txtt/m/n/10 load_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 574--576 []\T1/txtt/m/n/10 load_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 578--580 []\T1/txtt/m/n/10 load_tim() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 580--581 []\T1/txtt/m/n/10 load_tim() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 584--586 []\T1/txtt/m/n/10 load_xarray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 586--588 []\T1/txtt/m/n/10 load_xgm() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.dssc.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 588--589 []\T1/txtt/m/n/10 load_xgm() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 605--607 []\T1/txtt/m/n/10 mnemonics_for_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 612--613 []| \T1/txtt/m/n/10 toolbox_scs.base.tests.test_knife_edge\T1/qtm/m/n/10 , Overfull \hbox (13.12186pt too wide) in paragraph at lines 615--616 []| \T1/txtt/m/n/10 toolbox_scs.detectors.azimuthal_integrator\T1/qtm/m/n/10 , [173] Underfull \hbox (badness 10000) in paragraph at lines 631--632 []| \T1/txtt/m/n/10 toolbox_scs.misc.bunch_pattern_external\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 668--669 []\T1/txtt/m/n/10 normalize() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 672--674 []\T1/txtt/m/n/10 npulses_has_changed() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 676--678 []\T1/txtt/m/n/10 NUM_MAX_HITS \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.MaranaX at- Underfull \hbox (badness 10000) in paragraph at lines 684--685 []\T1/txtt/m/n/10 open_run() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 689--690 []\T1/txtt/m/n/10 parabola() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detec tors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 702--704 []\T1/txtt/m/n/10 plane_fitting_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- Underfull \hbox (badness 10000) in paragraph at lines 704--706 []\T1/txtt/m/n/10 plane_fitting_domain() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- Underfull \hbox (badness 10000) in paragraph at lines 706--708 []\T1/txtt/m/n/10 plot_azimuthal_int() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 706--708 \T1/qtm/m/it/10 box_scs.detectors.fccd.FastCCD method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 708--710 []\T1/txtt/m/n/10 plot_azimuthal_line_cut() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 too l- Underfull \hbox (badness 10000) in paragraph at lines 708--710 \T1/qtm/m/it/10 box_scs.detectors.fccd.FastCCD method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 710--712 []\T1/txtt/m/n/10 plot_binner() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 712--714 []\T1/txtt/m/n/10 plot_binner_hist() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 714--716 []\T1/txtt/m/n/10 plot_FastCCD() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 716--718 []\T1/txtt/m/n/10 plot_hist_processed() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 718--720 []\T1/txtt/m/n/10 plot_scan() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.dete ctors.fccd.FastCCD Underfull \hbox (badness 10000) in paragraph at lines 722--724 []\T1/txtt/m/n/10 plot_xgm_threshold() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 726--728 []\T1/txtt/m/n/10 positionToDelay() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- [174] Underfull \hbox (badness 10000) in paragraph at lines 731--733 []\T1/txtt/m/n/10 process_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 731--733 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 733--735 []\T1/txtt/m/n/10 process_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.d etectors.DSSCBinner Underfull \hbox (badness 10000) in paragraph at lines 735--736 []\T1/txtt/m/n/10 process_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.D SSCBinner method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 737--738 []\T1/txtt/m/n/10 process_dssc_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 738--740 []\T1/txtt/m/n/10 process_dssc_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ul e tool- Underfull \hbox (badness 10000) in paragraph at lines 742--743 []\T1/txtt/m/n/10 process_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule t ool- Underfull \hbox (badness 10000) in paragraph at lines 743--745 []\T1/txtt/m/n/10 process_one_module() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 755--757 []\T1/txtt/m/n/10 pulsePatternInfo() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 761--763 []\T1/txtt/m/n/10 quickmask_DSSC_ASIC() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 763--765 []\T1/txtt/m/n/10 quickmask_DSSC_ASIC() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod- ule tool- Underfull \hbox (badness 10000) in paragraph at lines 770--772 []\T1/txtt/m/n/10 reflectivity() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule too l- Underfull \hbox (badness 7012) in paragraph at lines 772--774 []\T1/txtt/m/n/10 removePolyBaseline() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box _scs.detectors.Viking Underfull \hbox (badness 10000) in paragraph at lines 774--776 []\T1/txtt/m/n/10 removePolyBaseline() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 774--776 \T1/qtm/m/it/10 box_scs.detectors.viking.Viking method\T1/qtm/m/n/10 ), Underfull \hbox (badness 6188) in paragraph at lines 786--787 []\T1/txtt/m/n/10 save() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detectors .fccd.FastCCD method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 791--793 []\T1/txtt/m/n/10 save_attributes_h5() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 793--795 []\T1/txtt/m/n/10 save_attributes_h5() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-u le tool- Underfull \hbox (badness 10000) in paragraph at lines 795--797 []\T1/txtt/m/n/10 save_formatted_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 795--797 \T1/qtm/m/it/10 box_scs.detectors.dssc.DSSCFormatter Underfull \hbox (badness 10000) in paragraph at lines 797--799 []\T1/txtt/m/n/10 save_formatted_data() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 797--799 \T1/qtm/m/it/10 box_scs.detectors.DSSCFormatter method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 803--805 []\T1/txtt/m/n/10 save_xarray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool - Underfull \hbox (badness 10000) in paragraph at lines 806--808 []\T1/txtt/m/n/10 set_flat_field() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 806--808 \T1/qtm/m/it/10 box_scs.routines.boz.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 808--810 []\T1/txtt/m/n/10 set_flat_field() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs .routines.parameters Underfull \hbox (badness 10000) in paragraph at lines 811--812 []\T1/txtt/m/n/10 set_Fnl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.boz.parameters Underfull \hbox (badness 5519) in paragraph at lines 812--813 []\T1/txtt/m/n/10 set_Fnl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 814--816 []\T1/txtt/m/n/10 set_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routi nes.boz.parameters Underfull \hbox (badness 5475) in paragraph at lines 817--818 []\T1/txtt/m/n/10 set_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 818--820 []\T1/txtt/m/n/10 set_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.hrixs.hRIXS Underfull \hbox (badness 10000) in paragraph at lines 821--823 []\T1/txtt/m/n/10 set_params() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.viking.Viking [175] Underfull \hbox (badness 10000) in paragraph at lines 825--827 []\T1/txtt/m/n/10 setUp() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.test.tes t_misc.TestDataAccess Underfull \hbox (badness 10000) in paragraph at lines 827--829 []\T1/txtt/m/n/10 setUp() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.test.tes t_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 829--831 []\T1/txtt/m/n/10 setUp() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.test.tes t_utils.TestDataAccess Underfull \hbox (badness 10000) in paragraph at lines 831--833 []\T1/txtt/m/n/10 setup_tmp_dir() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule to ol- Overfull \hbox (5.7323pt too wide) in paragraph at lines 835--837 []\T1/txtt/m/n/10 setUpClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.tes t.test_misc.TestDataAccess Overfull \hbox (8.28223pt too wide) in paragraph at lines 837--839 []\T1/txtt/m/n/10 setUpClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.tes t.test_top_level.TestToolbox Overfull \hbox (4.6323pt too wide) in paragraph at lines 839--841 []\T1/txtt/m/n/10 setUpClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.tes t.test_utils.TestDataAccess Underfull \hbox (badness 6526) in paragraph at lines 864--866 []\T1/txtt/m/n/10 tearDown() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.test. test_utils.TestDataAccess Underfull \hbox (badness 10000) in paragraph at lines 866--868 []\T1/txtt/m/n/10 tearDownClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 866--868 \T1/qtm/m/it/10 box_scs.test.test_dssc_cls.TestDSSC class Underfull \hbox (badness 10000) in paragraph at lines 868--870 []\T1/txtt/m/n/10 tearDownClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 868--870 \T1/qtm/m/it/10 box_scs.test.test_misc.TestDataAccess class Underfull \hbox (badness 10000) in paragraph at lines 870--872 []\T1/txtt/m/n/10 tearDownClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 870--872 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox class Underfull \hbox (badness 10000) in paragraph at lines 872--874 []\T1/txtt/m/n/10 tearDownClass() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 872--874 \T1/qtm/m/it/10 box_scs.test.test_utils.TestDataAccess class Underfull \hbox (badness 10000) in paragraph at lines 874--876 []\T1/txtt/m/n/10 test_centroid() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 874--876 \T1/qtm/m/it/10 box_scs.test.test_hrixs.TestHRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 876--878 []\T1/txtt/m/n/10 test_constant() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 876--878 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox Overfull \hbox (2.86227pt too wide) in paragraph at lines 878--880 []\T1/txtt/m/n/10 test_create() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.te st.test_dssc_cls.TestDSSC Underfull \hbox (badness 10000) in paragraph at lines 880--882 []\T1/txtt/m/n/10 test_extractBunchPattern() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 to ol- Underfull \hbox (badness 10000) in paragraph at lines 882--884 []\T1/txtt/m/n/10 test_getparam() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 882--884 \T1/qtm/m/it/10 box_scs.test.test_hrixs.TestHRIXS method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 884--886 []\T1/txtt/m/n/10 test_integration() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 884--886 \T1/qtm/m/it/10 box_scs.test.test_hrixs.TestHRIXS method\T1/qtm/m/n/10 ), Overfull \hbox (5.7323pt too wide) in paragraph at lines 886--888 []\T1/txtt/m/n/10 test_isppl() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.tes t.test_misc.TestDataAccess Underfull \hbox (badness 10000) in paragraph at lines 888--890 []\T1/txtt/m/n/10 test_issase1() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 890--892 []\T1/txtt/m/n/10 test_issase3() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 892--894 []\T1/txtt/m/n/10 test_knife_edge_base() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod -ule tool- Overfull \hbox (3.03224pt too wide) in paragraph at lines 894--896 []\T1/txtt/m/n/10 test_load() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.test .test_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 896--898 []\T1/txtt/m/n/10 test_loadbinnedarray() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 896--898 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 898--900 []\T1/txtt/m/n/10 test_normalization_all() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool - Underfull \hbox (badness 10000) in paragraph at lines 898--900 \T1/qtm/m/it/10 box_scs.test.test_dssc_cls.TestDSSC method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 900--902 []\T1/txtt/m/n/10 test_openrun() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 900--902 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 902--904 []\T1/txtt/m/n/10 test_openrunpath() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 902--904 \T1/qtm/m/it/10 box_scs.test.test_top_level.TestToolbox Underfull \hbox (badness 10000) in paragraph at lines 904--906 []\T1/txtt/m/n/10 test_prepare_arrays_nans() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 906--908 []\T1/txtt/m/n/10 test_prepare_arrays_range() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 908--910 []\T1/txtt/m/n/10 test_prepare_arrays_size() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 910--912 []\T1/txtt/m/n/10 test_processing_quick() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 910--912 \T1/qtm/m/it/10 box_scs.test.test_dssc_cls.TestDSSC method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 912--914 []\T1/txtt/m/n/10 test_pulsePatternInfo() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- [176] Underfull \hbox (badness 10000) in paragraph at lines 914--916 []\T1/txtt/m/n/10 test_range_mask() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule tool- Underfull \hbox (badness 10000) in paragraph at lines 916--918 []\T1/txtt/m/n/10 test_rundir1() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 918--920 []\T1/txtt/m/n/10 test_rundir2() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 920--922 []\T1/txtt/m/n/10 test_rundir3() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 922--924 []\T1/txtt/m/n/10 test_use_xgm_tim() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool- Underfull \hbox (badness 10000) in paragraph at lines 922--924 \T1/qtm/m/it/10 box_scs.test.test_dssc_cls.TestDSSC method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 931--932 []\T1/txtt/m/n/10 THRESHOLD \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.detect ors.hrixs.hRIXS at- [177] Underfull \hbox (badness 10000) in paragraph at lines 1031--1032 []\T1/txtt/m/n/10 use_gpu() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.boz.parameters Underfull \hbox (badness 5519) in paragraph at lines 1032--1033 []\T1/txtt/m/n/10 use_gpu() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.routin es.parameters method\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 1058--1060 []\T1/txtt/m/n/10 xgm_filter() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 tool-box_scs.det ectors.fccd.FastCCD [178]) (./scs-toolbox.aux) ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ec.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ts1.enc}{ /usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on scs-toolbox.pdf (182 pages, 776935 bytes). Transcript written on scs-toolbox.log. Latexmk: Index file 'scs-toolbox.idx' was written Latexmk: Log file says output to 'scs-toolbox.pdf' Latexmk: All targets (scs-toolbox.pdf) are up-to-date [rtd-command-info] start-time: 2024-07-15T08:34:41.955938Z, end-time: 2024-07-15T08:34:42.012209Z, duration: 0, exit-code: 0 mv -f /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/checkouts/latest/doc/_build/latex/scs-toolbox.pdf /usr/src/app/checkouts/readthedocs.org/user_builds/scs-toolbox/artifacts/latest/sphinx_pdf/scs-toolbox.pdf