Read the Docs build information Build id: 29020 Project: data-analysis-user-documentation Version: latest Commit: 1d08c580114dc27b02339ef338c58c0731988851 Date: 2024-09-17T14:33:42.933467Z State: finished Success: True [rtd-command-info] start-time: 2024-09-17T14:33:44.071927Z, end-time: 2024-09-17T14:33:45.281098Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 http://git.xfel.eu/dataAnalysis/user-documentation . Cloning into '.'... warning: redirecting to https://git.xfel.eu/dataAnalysis/user-documentation.git/ [rtd-command-info] start-time: 2024-09-17T14:33:45.568548Z, end-time: 2024-09-17T14:33:45.694497Z, duration: 0, exit-code: 0 git checkout --force origin/main Note: checking out 'origin/main'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 1d08c58 Merge branch 'patch-jhub' into 'main' [rtd-command-info] start-time: 2024-09-17T14:33:45.782907Z, end-time: 2024-09-17T14:33:45.840795Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2024-09-17T14:33:46.105019Z, end-time: 2024-09-17T14:33:46.186584Z, duration: 0, exit-code: 0 git submodule sync [rtd-command-info] start-time: 2024-09-17T14:33:46.276319Z, end-time: 2024-09-17T14:33:47.326129Z, duration: 1, exit-code: 0 git submodule update --init --force --recursive environments Submodule 'environments' (https://github.com/European-XFEL/environments) registered for path 'environments' Cloning into '/usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/checkouts/latest/environments'... Submodule path 'environments': checked out '54ec502addce1c67c83ceeca84d9578e9187fd30' [rtd-command-info] start-time: 2024-09-17T14:33:48.415325Z, end-time: 2024-09-17T14:33:53.053614Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/envs/latest Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/envs/latest/bin/python3.7 Also creating executable in /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2024-09-17T14:33:53.143900Z, end-time: 2024-09-17T14:33:54.055112Z, duration: 0, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/envs/latest/bin/python -m pip install --upgrade --no-cache-dir pip Requirement already satisfied: pip in /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/envs/latest/lib/python3.7/site-packages (24.0) [rtd-command-info] start-time: 2024-09-17T14:33:54.143167Z, end-time: 2024-09-17T14:34:04.869337Z, duration: 10, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/envs/latest/bin/python -m pip install --upgrade --no-cache-dir jinja2==2.11.3 markupsafe==2.0.1 Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 mkdocs<1.1 Collecting jinja2==2.11.3 Downloading Jinja2-2.11.3-py2.py3-none-any.whl.metadata (3.5 kB) Collecting markupsafe==2.0.1 Downloading MarkupSafe-2.0.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl.metadata (3.2 kB) Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl.metadata (1.5 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl.metadata (3.3 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl.metadata (2.3 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 861.9/861.9 kB 14.5 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl.metadata (4.5 kB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.13-py3-none-any.whl.metadata (3.0 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl.metadata (5.6 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl.metadata (463 bytes) Collecting mkdocs<1.1 Downloading mkdocs-1.0.4-py2.py3-none-any.whl.metadata (1.6 kB) Collecting future (from commonmark==0.8.1) Downloading future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting sphinx>=1.3.1 (from recommonmark==0.5.0) Downloading sphinx-5.3.0-py3-none-any.whl.metadata (6.4 kB) Collecting click>=3.3 (from mkdocs<1.1) Downloading click-8.1.7-py3-none-any.whl.metadata (3.0 kB) Collecting livereload>=2.5.1 (from mkdocs<1.1) Downloading livereload-2.7.0-py3-none-any.whl.metadata (2.1 kB) Collecting Markdown>=2.3.1 (from mkdocs<1.1) Downloading Markdown-3.4.4-py3-none-any.whl.metadata (6.9 kB) Collecting PyYAML>=3.10 (from mkdocs<1.1) Downloading PyYAML-6.0.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting tornado>=5.0 (from mkdocs<1.1) Downloading tornado-6.2-cp37-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB) Collecting importlib-metadata (from click>=3.3->mkdocs<1.1) Downloading importlib_metadata-6.7.0-py3-none-any.whl.metadata (4.9 kB) Collecting sphinxcontrib-applehelp (from sphinx>=1.3.1->recommonmark==0.5.0) Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl.metadata (1.4 kB) Collecting sphinxcontrib-devhelp (from sphinx>=1.3.1->recommonmark==0.5.0) Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl.metadata (1.4 kB) Collecting sphinxcontrib-jsmath (from sphinx>=1.3.1->recommonmark==0.5.0) Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl.metadata (1.4 kB) Collecting sphinxcontrib-htmlhelp>=2.0.0 (from sphinx>=1.3.1->recommonmark==0.5.0) Downloading sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl.metadata (1.6 kB) Collecting sphinxcontrib-serializinghtml>=1.1.5 (from sphinx>=1.3.1->recommonmark==0.5.0) Downloading sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl.metadata (1.5 kB) Collecting sphinxcontrib-qthelp (from sphinx>=1.3.1->recommonmark==0.5.0) Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl.metadata (1.4 kB) INFO: pip is looking at multiple versions of sphinx to determine which version is compatible with other requirements. 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/tmp/pip-ephem-wheel-cache-la_zio3m/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Successfully built mock Installing collected packages: snowballstemmer, pytz, Pygments, mock, docutils, zipp, urllib3, typing-extensions, tornado, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, setuptools, PyYAML, pillow, packaging, markupsafe, imagesize, idna, future, charset-normalizer, certifi, babel, alabaster, requests, livereload, jinja2, importlib-metadata, commonmark, sphinx, Markdown, click, recommonmark, mkdocs Attempting uninstall: setuptools Found existing installation: setuptools 68.0.0 Uninstalling setuptools-68.0.0: Successfully uninstalled setuptools-68.0.0 Successfully installed Markdown-3.4.4 PyYAML-6.0.1 Pygments-2.3.1 alabaster-0.7.13 babel-2.14.0 certifi-2024.8.30 charset-normalizer-3.3.2 click-8.1.7 commonmark-0.8.1 docutils-0.14 future-1.0.0 idna-3.10 imagesize-1.4.1 importlib-metadata-6.7.0 jinja2-2.11.3 livereload-2.7.0 markupsafe-2.0.1 mkdocs-1.0.4 mock-1.0.1 packaging-24.0 pillow-5.4.1 pytz-2024.2 recommonmark-0.5.0 requests-2.31.0 setuptools-41.0.1 snowballstemmer-2.2.0 sphinx-5.1.1 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.5 tornado-6.2 typing-extensions-4.7.1 urllib3-2.0.7 zipp-3.15.0 [rtd-command-info] start-time: 2024-09-17T14:34:04.960509Z, end-time: 2024-09-17T14:34:16.807271Z, duration: 11, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/envs/latest/bin/python -m pip install --exists-action=w --no-cache-dir -r requirements.txt Collecting mkdocs>=1.5.0 (from -r requirements.txt (line 1)) Downloading mkdocs-1.5.3-py3-none-any.whl.metadata (6.2 kB) Collecting mkdocs-material~=8.5.10 (from -r requirements.txt (line 2)) Downloading 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mkdocs-gen-files~=0.5.0 (from -r requirements.txt (line 9)) Downloading mkdocs_gen_files-0.5.0-py3-none-any.whl.metadata (2.9 kB) Collecting mkdocs-monorepo-plugin~=1.0.5 (from -r requirements.txt (line 10)) Downloading mkdocs_monorepo_plugin-1.0.5-py3-none-any.whl.metadata (1.2 kB) Requirement already satisfied: click>=7.0 in /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/envs/latest/lib/python3.7/site-packages (from mkdocs>=1.5.0->-r requirements.txt (line 1)) (8.1.7) Collecting ghp-import>=1.0 (from mkdocs>=1.5.0->-r requirements.txt (line 1)) Downloading ghp_import-2.1.0-py3-none-any.whl.metadata (7.2 kB) Requirement already satisfied: importlib-metadata>=4.3 in /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/envs/latest/lib/python3.7/site-packages (from mkdocs>=1.5.0->-r requirements.txt (line 1)) (6.7.0) Requirement already satisfied: jinja2>=2.11.1 in 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mkdocs-literate-nav, mkdocs-gen-files, mkdocs-autorefs, mkdocstrings, mkdocstrings-python Attempting uninstall: urllib3 Found existing installation: urllib3 2.0.7 Uninstalling urllib3-2.0.7: Successfully uninstalled urllib3-2.0.7 Attempting uninstall: pygments Found existing installation: Pygments 2.3.1 Uninstalling Pygments-2.3.1: Successfully uninstalled Pygments-2.3.1 Attempting uninstall: jinja2 Found existing installation: Jinja2 2.11.3 Uninstalling Jinja2-2.11.3: Successfully uninstalled Jinja2-2.11.3 Attempting uninstall: mkdocs Found existing installation: mkdocs 1.0.4 Uninstalling mkdocs-1.0.4: Successfully uninstalled mkdocs-1.0.4 Successfully installed cached-property-1.5.2 colorama-0.4.6 ghp-import-2.1.0 griffe-0.30.1 jinja2-3.1.4 karabo_bridge-0.7.0 mergedeep-1.3.4 mkdocs-1.5.3 mkdocs-autorefs-0.4.1 mkdocs-gen-files-0.5.0 mkdocs-literate-nav-0.5.0 mkdocs-material-8.5.11 mkdocs-material-extensions-1.2 mkdocs-monorepo-plugin-1.0.5 mkdocs-redirects-1.2.1 mkdocs-section-index-0.3.8 mkdocstrings-0.22.0 mkdocstrings-python-1.1.2 msgpack-1.0.5 msgpack-numpy-0.4.8 numpy-1.21.6 pathspec-0.11.2 platformdirs-4.0.0 pygments-2.17.2 pymdown-extensions-10.2.1 python-dateutil-2.9.0.post0 python-slugify-8.0.4 pyyaml-env-tag-0.1 pyzmq-26.2.0 six-1.16.0 text-unidecode-1.3 urllib3-1.26.20 watchdog-3.0.0 [rtd-command-info] start-time: 2024-09-17T14:34:17.052293Z, end-time: 2024-09-17T14:34:17.113094Z, duration: 0, exit-code: 0 cat mkdocs.yml docs_dir: /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/checkouts/latest/docs extra: social: - icon: fontawesome/brands/github link: https://github.com/European-XFEL extra_css: - stylesheets/extra.css - http://rtd.xfel.eu/static/css/badge_only.css - http://rtd.xfel.eu/static/css/readthedocs-doc-embed.css extra_javascript: - readthedocs-data.js - http://rtd.xfel.eu/static/core/js/readthedocs-doc-embed.js - http://rtd.xfel.eu/static/javascript/readthedocs-analytics.js google_analytics: null hooks: - git_submodule_update.py markdown_extensions: - abbr - admonition - attr_list - codehilite - def_list - footnotes - md_in_html - pymdownx.details - pymdownx.emoji - pymdownx.snippets: auto_append: - docs/includes/glossary.md url_download: true - pymdownx.superfences - pymdownx.tabbed: alternate_style: true - pymdownx.tasklist - tables - toc: permalink: "\xB6" nav: - index.md - Overview: overview.md - Accounts and Access: accounts.md - Data Files: data-files.md - Online Analysis: online.md - Offline Analysis (Maxwell): offline.md - Software: software/index.md - Software Environments: '!include ./environments/mkdocs.yml' - Jupyter Hub: jhub.md - Usecases: usecases.md - Resources: resources.md - Newsletters: newsletters.md - Changelog: changelog.md - Citations: citations.md plugins: - search - gen-files: scripts: - ./environments/docs/gen_environments.py - ./environments/docs/gen_modules.py - ./environments/docs/gen_recipes.py - literate-nav - mkdocstrings - monorepo - redirects: redirect_maps: citations.html.md: citations.md computing.html.md: accounts.md datafiles.html.md: data-files.md jhub.html.md: jhub.md online.html.md: online.md overview.html.md: overview.md resources.html.md: resources.md software.html.md: software/index.md usecases.html.md: usecases.md repo_url: https://git.xfel.eu/dataAnalysis/user-documentation site_description: Data Analysis User Documentation for EuXFEL site_name: EuXFEL Data Analysis User Documentation site_url: https://rtd.xfel.eu/docs/data-analysis-user-documentation/en/latest/ theme: custom_dir: docs/overrides features: - announce.dismiss - content.tabs.link - navigation.indexes - navigation.top - navigation.tracking - navigation.instant - search.highlight - search.share - search.suggest - toc.follow - toc.integrate font: code: Roboto Mono text: Roboto logo: assets/logo.jpeg name: material palette: language: en scheme: preference [rtd-command-info] start-time: 2024-09-17T14:34:17.201198Z, end-time: 2024-09-17T14:34:24.236245Z, duration: 7, exit-code: 0 /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/envs/latest/bin/python -m mkdocs build --clean --site-dir _build/html --config-file mkdocs.yml INFO - git_submodule_update: Running `git submodule update --remote` Submodule path 'environments': checked out 'c44661518af638ad79185377c0664426ded1cc16' INFO - Cleaning site directory INFO - Building documentation to directory: /usr/src/app/checkouts/readthedocs.org/user_builds/data-analysis-user-documentation/checkouts/latest/_build/html INFO - The following pages exist in the docs directory, but are not included in the "nav" configuration: - includes/glossary.md - software/extra-xwiz.md - software/hdf5-virtualise.md - software/karabo-bridge.md INFO - Doc file 'newsletters.md' contains an unrecognized relative link '../euxfel-software-environments/', it was left as is. Did you mean 'euxfel-software-environments/index.md'? INFO - Doc file 'newsletters.md' contains an unrecognized relative link '../euxfel-software-environments/', it was left as is. Did you mean 'euxfel-software-environments/index.md'? INFO - Doc file 'newsletters.md' contains an unrecognized relative link '../euxfel-software-environments/environments/#module-system', it was left as is. Did you mean 'euxfel-software-environments/environments.md#module-system'? INFO - Doc file 'newsletters.md' contains an unrecognized relative link '../euxfel-software-environments/environments/#using-our-python-environments', it was left as is. Did you mean 'euxfel-software-environments/environments.md#using-our-python-environments'? INFO - Doc file 'newsletters.md' contains an unrecognized relative link '../euxfel-software-environments/environments/#creating-your-own-environments', it was left as is. Did you mean 'euxfel-software-environments/environments.md#creating-your-own-environments'? INFO - Doc file 'newsletters.md' contains an unrecognized relative link '../euxfel-software-environments/environments/#faq', it was left as is. Did you mean 'euxfel-software-environments/environments.md#faq'? INFO - Doc file 'offline.md' contains an unrecognized relative link '../euxfel-software-environments/', it was left as is. Did you mean 'euxfel-software-environments/index.md'? INFO - Doc file 'offline.md' contains an unrecognized relative link '../euxfel-software-environments/', it was left as is. Did you mean 'euxfel-software-environments/index.md'? INFO - Doc file 'software/index.md' contains an unrecognized relative link '../euxfel-software-environments/', it was left as is. Did you mean '../euxfel-software-environments/index.md'? INFO - Doc file 'software/index.md' contains an unrecognized relative link '../euxfel-software-environments/environments#module-system', it was left as is. Did you mean '../euxfel-software-environments/environments.md#module-system'? INFO - Doc file 'software/index.md' contains an unrecognized relative link '../euxfel-software-environments/environments#module-system', it was left as is. Did you mean '../euxfel-software-environments/environments.md#module-system'? INFO - Doc file 'software/index.md' contains an unrecognized relative link '../euxfel-software-environments/', it was left as is. Did you mean '../euxfel-software-environments/index.md'? INFO - Documentation built in 6.22 seconds