Read the Docs build information Build id: 7369 Project: data-analysis-user-documentation Version: latest Commit: 4c7f99cbd36c58a188ec06bffb15f905d81fcb87 Date: 2018-06-20T07:55:47.428064Z State: finished Success: True [rtd-command-info] start-time: 2018-06-20T12:56:01.479000Z, end-time: 2018-06-20T12:56:07.798000Z, duration: 6, exit-code: 0 python3 -mvirtualenv --no-site-packages --no-download /user_builds/data-analysis-user-documentation/envs/latest Using base prefix '/usr' New python executable in /user_builds/data-analysis-user-documentation/envs/latest/bin/python3 Not overwriting existing python script /user_builds/data-analysis-user-documentation/envs/latest/bin/python (you must use /user_builds/data-analysis-user-documentation/envs/latest/bin/python3) Installing setuptools, pip, wheel...done. Overwriting /user_builds/data-analysis-user-documentation/envs/latest/bin/activate.fish with new content [rtd-command-info] start-time: 2018-06-20T12:56:07.858000Z, end-time: 2018-06-20T12:57:16.008000Z, duration: 68, exit-code: 0 python /user_builds/data-analysis-user-documentation/envs/latest/bin/pip install --use-wheel -U --cache-dir /user_builds/data-analysis-user-documentation/.cache/pip sphinx==1.3.5 Pygments==2.1.3 setuptools==20.1.1 docutils==0.12 mkdocs==0.15.0 mock==1.0.1 pillow==2.6.1 git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext sphinx-rtd-theme==0.1.9 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.5.4 recommonmark==0.1.1 Collecting sphinx==1.3.5 Downloading https://files.pythonhosted.org/packages/ff/91/45883bc962bda1be7e78039b41cc15e1eb3327ec75679eedd067b5d07bd5/Sphinx-1.3.5-py2.py3-none-any.whl (1.5MB) Collecting Pygments==2.1.3 Downloading https://files.pythonhosted.org/packages/9e/d0/d692085518c6a2dc875fe421c866fb6a08e0d9796ca507803c1e545fa116/Pygments-2.1.3-py2.py3-none-any.whl (755kB) Collecting setuptools==20.1.1 Using cached https://files.pythonhosted.org/packages/e8/82/3b5455f74bf9ac0757d09c625b7741e6fc284d7519cffc3babb6c5173cf5/setuptools-20.1.1-py2.py3-none-any.whl Collecting docutils==0.12 Downloading https://files.pythonhosted.org/packages/c7/16/29d8de2404c5b90243b51f91315b3ce375169ceb48a68aeec0862e0143c4/docutils-0.12-py3-none-any.whl (508kB) Collecting mkdocs==0.15.0 Downloading https://files.pythonhosted.org/packages/a7/10/c839adfd209aba3a5905d4a766ea354a1d03a414d6d437e10988574de70a/mkdocs-0.15.0-py2.py3-none-any.whl (966kB) Collecting mock==1.0.1 Downloading https://files.pythonhosted.org/packages/a2/52/7edcd94f0afb721a2d559a5b9aae8af4f8f2c79bc63fdbe8a8a6c9b23bbe/mock-1.0.1.tar.gz (818kB) Collecting pillow==2.6.1 Downloading https://files.pythonhosted.org/packages/9f/53/9dafa3a48ffa25f4e22f40df880b58b99ad53648f0990caf09b1824d5db2/Pillow-2.6.1.tar.gz (7.3MB) Collecting readthedocs-sphinx-ext from git+https://github.com/rtfd/readthedocs-sphinx-ext.git@0.6-alpha#egg=readthedocs-sphinx-ext Cloning https://github.com/rtfd/readthedocs-sphinx-ext.git (to 0.6-alpha) to /tmp/pip-build-hst7fjal/readthedocs-sphinx-ext Collecting sphinx-rtd-theme==0.1.9 Downloading https://files.pythonhosted.org/packages/97/d9/e27ef5a2b6b92d2cf29724c25daf0683adacc43ab5ad15dc0e9b69b464f8/sphinx_rtd_theme-0.1.9-py3-none-any.whl (693kB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading https://files.pythonhosted.org/packages/6e/71/c3648cc2f675063dbe2d669004a59e4a5120172713a1de3c3b14144d4b31/alabaster-0.7.11-py2.py3-none-any.whl Collecting commonmark==0.5.4 Downloading https://files.pythonhosted.org/packages/4d/93/3808cbcebe94d205f55a9a32857df733a603339d32c46cd32669d808d964/CommonMark-0.5.4.tar.gz (120kB) Collecting recommonmark==0.1.1 Downloading https://files.pythonhosted.org/packages/cb/65/0c893f1be31b8892ddd491ff05a9d539459ac07b9b1c9804034589ad7eb2/recommonmark-0.1.1-py2.py3-none-any.whl Collecting snowballstemmer>=1.1 (from sphinx==1.3.5) Downloading https://files.pythonhosted.org/packages/d4/6c/8a935e2c7b54a37714656d753e4187ee0631988184ed50c0cf6476858566/snowballstemmer-1.2.1-py2.py3-none-any.whl (64kB) Collecting babel!=2.0,>=1.3 (from sphinx==1.3.5) Using cached https://files.pythonhosted.org/packages/b8/ad/c6f60602d3ee3d92fbed87675b6fb6a6f9a38c223343ababdb44ba201f10/Babel-2.6.0-py2.py3-none-any.whl Collecting Jinja2>=2.3 (from sphinx==1.3.5) Downloading https://files.pythonhosted.org/packages/7f/ff/ae64bacdfc95f27a016a7bed8e8686763ba4d277a78ca76f32659220a731/Jinja2-2.10-py2.py3-none-any.whl (126kB) Collecting six>=1.4 (from sphinx==1.3.5) Downloading https://files.pythonhosted.org/packages/67/4b/141a581104b1f6397bfa78ac9d43d8ad29a7ca43ea90a2d863fe3056e86a/six-1.11.0-py2.py3-none-any.whl Collecting mkdocs-bootswatch>=0.1.0 (from mkdocs==0.15.0) Downloading https://files.pythonhosted.org/packages/6c/48/ecdb1ef7c4e2751c516b815342e320f2b7cc9e09a87df6c0125d06dff0a6/mkdocs_bootswatch-0.5.0-py2.py3-none-any.whl (6.4MB) Collecting PyYAML>=3.10 (from mkdocs==0.15.0) Downloading https://files.pythonhosted.org/packages/4a/85/db5a2df477072b2902b0eb892feb37d88ac635d36245a72a6a69b23b383a/PyYAML-3.12.tar.gz (253kB) Collecting livereload>=2.3.2 (from mkdocs==0.15.0) Using cached https://files.pythonhosted.org/packages/dd/b4/213daced3ff1b4e02a1f700748e20e9a7481f5bfef57d11ae9babfd4aa2f/livereload-2.5.2-py2.py3-none-any.whl Collecting Markdown>=2.3.1 (from mkdocs==0.15.0) Downloading https://files.pythonhosted.org/packages/6d/7d/488b90f470b96531a3f5788cf12a93332f543dbab13c423a5e7ce96a0493/Markdown-2.6.11-py2.py3-none-any.whl (78kB) Collecting tornado>=4.1 (from mkdocs==0.15.0) Downloading https://files.pythonhosted.org/packages/cf/d1/3be271ae5eba9fb59df63c9891fdc7d8044b999e8ac145994cdbfd2ae66a/tornado-5.0.2.tar.gz (506kB) Collecting mkdocs-bootstrap>=0.1.1 (from mkdocs==0.15.0) Downloading https://files.pythonhosted.org/packages/10/5f/ffc731f23073d85a95cb24cc764cfc9a2924cdda6f91161d6b6dea15b5dd/mkdocs_bootstrap-0.2.0-py2.py3-none-any.whl (701kB) Collecting click>=4.0 (from mkdocs==0.15.0) Downloading https://files.pythonhosted.org/packages/34/c1/8806f99713ddb993c5366c362b2f908f18269f8d792aff1abfd700775a77/click-6.7-py2.py3-none-any.whl (71kB) Collecting requests (from readthedocs-sphinx-ext) Using cached https://files.pythonhosted.org/packages/65/47/7e02164a2a3db50ed6d8a6ab1d6d60b69c4c3fdf57a284257925dfc12bda/requests-2.19.1-py2.py3-none-any.whl Collecting nilsimsa>=0.3.7 (from readthedocs-sphinx-ext) Downloading https://files.pythonhosted.org/packages/e9/e4/be3c435d1f553800ccd69a5bb5b1c5b08e38a47e623d87b4c9208a6eebc7/nilsimsa-0.3.8.tar.gz (276kB) Collecting pytz>=0a (from babel!=2.0,>=1.3->sphinx==1.3.5) Downloading https://files.pythonhosted.org/packages/dc/83/15f7833b70d3e067ca91467ca245bae0f6fe56ddc7451aa0dc5606b120f2/pytz-2018.4-py2.py3-none-any.whl (510kB) Collecting MarkupSafe>=0.23 (from Jinja2>=2.3->sphinx==1.3.5) Downloading https://files.pythonhosted.org/packages/4d/de/32d741db316d8fdb7680822dd37001ef7a448255de9699ab4bfcbdf4172b/MarkupSafe-1.0.tar.gz Collecting backports_abc>=0.4 (from tornado>=4.1->mkdocs==0.15.0) Downloading https://files.pythonhosted.org/packages/7d/56/6f3ac1b816d0cd8994e83d0c4e55bc64567532f7dc543378bd87f81cebc7/backports_abc-0.5-py2.py3-none-any.whl Collecting chardet<3.1.0,>=3.0.2 (from requests->readthedocs-sphinx-ext) Downloading https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl (133kB) Collecting urllib3<1.24,>=1.21.1 (from requests->readthedocs-sphinx-ext) Using cached https://files.pythonhosted.org/packages/bd/c9/6fdd990019071a4a32a5e7cb78a1d92c53851ef4f56f62a3486e6a7d8ffb/urllib3-1.23-py2.py3-none-any.whl Collecting certifi>=2017.4.17 (from requests->readthedocs-sphinx-ext) Downloading https://files.pythonhosted.org/packages/7c/e6/92ad559b7192d846975fc916b65f667c7b8c3a32bea7372340bfe9a15fa5/certifi-2018.4.16-py2.py3-none-any.whl (150kB) Collecting idna<2.8,>=2.5 (from requests->readthedocs-sphinx-ext) Using cached https://files.pythonhosted.org/packages/4b/2a/0276479a4b3caeb8a8c1af2f8e4355746a97fab05a372e4a2c6a6b876165/idna-2.7-py2.py3-none-any.whl Building wheels for collected packages: mock, pillow, commonmark, PyYAML, tornado, nilsimsa, MarkupSafe Running setup.py bdist_wheel for mock: started Running setup.py bdist_wheel for mock: finished with status 'done' Stored in directory: /user_builds/data-analysis-user-documentation/.cache/pip/wheels/7e/72/92/744b532c779242b57aab4bcba80c312b30c069bbd60025e7e6 Running setup.py bdist_wheel for pillow: started Running setup.py bdist_wheel for pillow: finished with status 'done' Stored in directory: /user_builds/data-analysis-user-documentation/.cache/pip/wheels/de/0e/6b/556798d1ac8762a076ddff5b20f65b2e6cc2ae13b0e683c263 Running setup.py bdist_wheel for commonmark: started Running setup.py bdist_wheel for commonmark: finished with status 'done' Stored in directory: /user_builds/data-analysis-user-documentation/.cache/pip/wheels/a0/f4/35/019d917f6875107ade3aad634c982f5c6b604c5631cddf20ac Running setup.py bdist_wheel for PyYAML: started Running setup.py bdist_wheel for PyYAML: finished with status 'done' Stored in directory: /user_builds/data-analysis-user-documentation/.cache/pip/wheels/03/05/65/bdc14f2c6e09e82ae3e0f13d021e1b6b2481437ea2f207df3f Running setup.py bdist_wheel for tornado: started Running setup.py bdist_wheel for tornado: finished with status 'done' Stored in directory: /user_builds/data-analysis-user-documentation/.cache/pip/wheels/29/8c/cf/6a5a8f6e35d877c0cb72b109d21c34981504897ce9a605e599 Running setup.py bdist_wheel for nilsimsa: started Running setup.py bdist_wheel for nilsimsa: finished with status 'done' Stored in directory: /user_builds/data-analysis-user-documentation/.cache/pip/wheels/64/48/61/8d7f0b227d16d55bdad76e3181b6a76eb00bbbd147305da14d Running setup.py bdist_wheel for MarkupSafe: started Running setup.py bdist_wheel for MarkupSafe: finished with status 'done' Stored in directory: /user_builds/data-analysis-user-documentation/.cache/pip/wheels/33/56/20/ebe49a5c612fffe1c5a632146b16596f9e64676768661e4e46 Successfully built mock pillow commonmark PyYAML tornado nilsimsa MarkupSafe Installing collected packages: docutils, alabaster, snowballstemmer, pytz, babel, sphinx-rtd-theme, MarkupSafe, Jinja2, six, Pygments, sphinx, setuptools, mkdocs-bootswatch, PyYAML, backports-abc, tornado, livereload, Markdown, mkdocs-bootstrap, click, mkdocs, mock, pillow, chardet, urllib3, certifi, idna, requests, nilsimsa, readthedocs-sphinx-ext, commonmark, recommonmark Found existing installation: setuptools 28.8.0 Uninstalling setuptools-28.8.0: Successfully uninstalled setuptools-28.8.0 Running setup.py install for readthedocs-sphinx-ext: started Running setup.py install for readthedocs-sphinx-ext: finished with status 'done' Successfully installed Jinja2-2.10 Markdown-2.6.11 MarkupSafe-1.0 PyYAML-3.12 Pygments-2.1.3 alabaster-0.7.11 babel-2.6.0 backports-abc-0.5 certifi-2018.4.16 chardet-3.0.4 click-6.7 commonmark-0.5.4 docutils-0.12 idna-2.7 livereload-2.5.2 mkdocs-0.15.0 mkdocs-bootstrap-0.2.0 mkdocs-bootswatch-0.5.0 mock-1.0.1 nilsimsa-0.3.8 pillow-2.6.1 pytz-2018.4 readthedocs-sphinx-ext-0.5.4 recommonmark-0.1.1 requests-2.19.1 setuptools-20.1.1 six-1.11.0 snowballstemmer-1.2.1 sphinx-1.3.5 sphinx-rtd-theme-0.1.9 tornado-5.0.2 urllib3-1.23 You are using pip version 9.0.1, however version 10.0.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2018-06-20T12:57:16.070000Z, end-time: 2018-06-20T12:57:38.529000Z, duration: 22, exit-code: 0 python /user_builds/data-analysis-user-documentation/envs/latest/bin/pip install --exists-action=w --cache-dir /user_builds/data-analysis-user-documentation/.cache/pip -rsource/requirements.txt Obtaining karabo_bridge from git+git://github.com/European-XFEL/karabo-bridge-py.git#egg=karabo_bridge (from -r source/requirements.txt (line 1)) Cloning git://github.com/European-XFEL/karabo-bridge-py.git to /user_builds/data-analysis-user-documentation/envs/latest/src/karabo-bridge Collecting msgpack>=0.5.4 (from karabo_bridge->-r source/requirements.txt (line 1)) Downloading https://files.pythonhosted.org/packages/f3/b6/9affbea179c3c03a0eb53515d9ce404809a122f76bee8fc8c6ec9497f51f/msgpack-0.5.6.tar.gz (138kB) Collecting msgpack-numpy (from karabo_bridge->-r source/requirements.txt (line 1)) Downloading https://files.pythonhosted.org/packages/0f/04/357bc3313277ae5aa5336b845c6bdac203fad3880af01f7a0d36c71057ef/msgpack_numpy-0.4.3-py2.py3-none-any.whl Collecting numpy (from karabo_bridge->-r source/requirements.txt (line 1)) Downloading https://files.pythonhosted.org/packages/6a/69/24b5d5c2466df479ed42f970a61eb570f57d8a20bd79e44ec39ee37ded12/numpy-1.14.5-cp34-cp34m-manylinux1_x86_64.whl (12.1MB) Collecting pyzmq>=17.0.0 (from karabo_bridge->-r source/requirements.txt (line 1)) Downloading https://files.pythonhosted.org/packages/a1/d8/2ee889a0420e507ade1564c2271e972abd16b5122229c934e68d2ecf7c6c/pyzmq-17.0.0-cp34-cp34m-manylinux1_x86_64.whl (3.1MB) Building wheels for collected packages: msgpack Running setup.py bdist_wheel for msgpack: started Running setup.py bdist_wheel for msgpack: finished with status 'done' Stored in directory: /user_builds/data-analysis-user-documentation/.cache/pip/wheels/f0/02/4c/525b56fce78c415eb8066f6554f9de02792df26b8f882f6d65 Successfully built msgpack Installing collected packages: msgpack, numpy, msgpack-numpy, pyzmq, karabo-bridge Running setup.py develop for karabo-bridge Successfully installed karabo-bridge msgpack-0.5.6 msgpack-numpy-0.4.3 numpy-1.14.5 pyzmq-17.0.0 You are using pip version 9.0.1, however version 10.0.1 is available. You should consider upgrading via the 'pip install --upgrade pip' command. [rtd-command-info] start-time: 2018-06-20T12:57:40.134000Z, end-time: 2018-06-20T12:57:40.161000Z, duration: 0, exit-code: 0 cat conf.py #!/usr/bin/env python3 # -*- coding: utf-8 -*- # # User documentation documentation build configuration file, created by # sphinx-quickstart on Mon Jun 26 08:59:34 2017. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # # import os # import sys # sys.path.insert(0, os.path.abspath('.')) # -- General configuration ------------------------------------------------ # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.intersphinx', 'sphinx.ext.todo', 'sphinx.ext.autodoc', 'sphinx.ext.napoleon', ] # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: # # source_suffix = ['.rst', '.md'] source_suffix = '.rst' # The encoding of source files. # # source_encoding = 'utf-8-sig' # The master toctree document. master_doc = 'index' # General information about the project. project = 'User Documentation' copyright = 'European XFEL' author = 'Hans Fangohr, Sandor Brockhauser and others from CAS and ITDM at XFEL' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. version = '1.0' # The full version, including alpha/beta/rc tags. release = '1.0' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: # # today = '' # # Else, today_fmt is used as the format for a strftime call. # # today_fmt = '%B %d, %Y' # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # The reST default role (used for this markup: `text`) to use for all # documents. # # default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. # # add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). # # add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. # # show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # A list of ignored prefixes for module index sorting. # modindex_common_prefix = [] # If true, keep warnings as "system message" paragraphs in the built documents. # keep_warnings = False # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = True # If true, figures, tables and code-blocks are automatically numbered if # they have a caption. At same time, the numref role is enabled. For now, # it works only with the HTML builder and LaTeX builder. Default is False. numfig = True # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # html_theme = 'default' # Theme options are theme-specific and customize the look and feel of a theme # further. For a list of options available for each theme, see the # documentation. # # html_theme_options = {} # Add any paths that contain custom themes here, relative to this directory. # html_theme_path = [] # The name for this set of Sphinx documents. # " v documentation" by default. # # html_title = 'Karabo Commissioning Guidelines v1.4.7' # A shorter title for the navigation bar. Default is the same as html_title. # # html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. # # html_logo = None # The name of an image file (relative to this directory) to use as a favicon of # the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. # # html_favicon = None # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the documentation. # # html_extra_path = [] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # # html_last_updated_fmt = None # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. # # html_use_smartypants = True # Custom sidebar templates, maps document names to template names. # # html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. # # html_additional_pages = {} # If false, no module index is generated. # # html_domain_indices = True # If false, no index is generated. # # html_use_index = True # If true, the index is split into individual pages for each letter. # # html_split_index = False # If true, links to the reST sources are added to the pages. # # html_show_sourcelink = True # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # # html_show_sphinx = True # If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. # # html_show_copyright = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. # # html_use_opensearch = '' # This is the file name suffix for HTML files (e.g. ".xhtml"). # html_file_suffix = None # Language to be used for generating the HTML full-text search index. # Sphinx supports the following languages: # 'da', 'de', 'en', 'es', 'fi', 'fr', 'h', 'it', 'ja' # 'nl', 'no', 'pt', 'ro', 'r', 'sv', 'tr', 'zh' # # html_search_language = 'en' # A dictionary with options for the search language support, empty by default. # 'ja' uses this config value. # 'zh' user can custom change `jieba` dictionary path. # # html_search_options = {'type': 'default'} # The name of a javascript file (relative to the configuration directory) that # implements a search results scorer. If empty, the default will be used. # # html_search_scorer = 'scorer.js' # -- Options for HTMLHelp output ------------------------------------------ # Output file base name for HTML help builder. htmlhelp_basename = 'Userdocumentationdoc' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'Userdocumentation.tex', 'User Documentation', 'European XFEL', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # latex_logo = "_templates/european-xfel-logo_cmyk.eps" # For "manual" documents, if this is true, then toplevel headings are parts, # not chapters. # # latex_use_parts = False # If true, show page references after internal links. # # latex_show_pagerefs = False # If true, show URL addresses after external links. # # latex_show_urls = False # Documents to append as an appendix to all manuals. # # latex_appendices = [] # It false, will not define \strong, \code, itleref, \crossref ... but only # \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added # packages. # # latex_keep_old_macro_names = True # If false, no module index is generated. # # latex_domain_indices = True # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'userdocumentation', 'User documentation Documentation', [author], 1) ] # If true, show URL addresses after external links. # # man_show_urls = False # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'Userdocumentation', 'User documentation Documentation', author, 'Userdocumentation', 'One line description of project.', 'Miscellaneous'), ] # Documents to append as an appendix to all manuals. # # texinfo_appendices = [] # If false, no module index is generated. # # texinfo_domain_indices = True # How to display URL addresses: 'footnote', 'no', or 'inline'. # # texinfo_show_urls = 'footnote' # If true, do not generate a @detailmenu in the "Top" node's menu. # # texinfo_no_detailmenu = False # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'https://docs.python.org/': None} # We have trouble with some of the links in link check # (see https://git.xfel.eu/gitlab/dataAnalysis/user-documentation/issues/2) # -> we ignore the links for which the link check fails on CI linkcheck_ignore = ['https://in.xfel.eu/elog/', 'https://max-display.desy.de:3443', 'https://confluence.desy.de/display/IS/Docker+containers+on+Maxwell', 'https://confluence.desy.de/display/IS/Alphabetical+List+of+Packages', 'https://in.xfel.eu/metadata/proposals/30/runs'] ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # import sys import os.path from six import string_types from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix else: SUFFIX = source_suffix[0] else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') html_static_path.append('/rtd_root/readthedocs/templates/sphinx/_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = False if 'html_theme' in globals(): if html_theme in ['default']: # Allow people to bail with a hack of having an html_style if not 'html_style' in globals(): import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True else: import sphinx_rtd_theme html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} if 'html_theme_path' in globals(): html_theme_path.append(sphinx_rtd_theme.get_html_theme_path()) else: html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] using_rtd_theme = True if globals().get('websupport2_base_url', False): websupport2_base_url = 'https://readthedocs.org/websupport' if 'http' not in settings.MEDIA_URL: websupport2_static_url = '/static/' else: websupport2_static_url = '/media//static' #Add project information to the template context. context = { 'using_theme': using_rtd_theme, 'html_theme': html_theme, 'current_version': "latest", 'MEDIA_URL': "/media/", 'PRODUCTION_DOMAIN': "exflrtd.desy.de", 'versions': [ ("latest", "/en/latest/"), ], 'downloads': [ ("pdf", "//exflrtd.desy.de/projects/data-analysis-user-documentation/downloads/pdf/latest/"), ("htmlzip", "//exflrtd.desy.de/projects/data-analysis-user-documentation/downloads/htmlzip/latest/"), ("epub", "//exflrtd.desy.de/projects/data-analysis-user-documentation/downloads/epub/latest/"), ], 'subprojects': [ ], 'slug': 'data-analysis-user-documentation', 'name': u'Data Analysis User Documentation', 'rtd_language': u'en', 'canonical_url': 'http://exflrtd.desy.de/docs/data-analysis-user-documentation/en/latest/', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/source/', 'api_host': 'https://readthedocs.org', 'github_user': 'None', 'github_repo': 'None', 'github_version': 'master', 'display_github': False, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'master', 'display_bitbucket': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-1', 'commit': '4c7f99cb', } if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): extensions.append("readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] [rtd-command-info] start-time: 2018-06-20T12:57:40.443000Z, end-time: 2018-06-20T12:57:46.291000Z, duration: 5, exit-code: 0 python /user_builds/data-analysis-user-documentation/envs/latest/bin/sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html Running Sphinx v1.3.5 making output directory... loading translations [en]... done loading intersphinx inventory from https://docs.python.org/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocs]: targets for 11 source files that are out of date updating environment: 11 added, 0 changed, 0 removed reading sources... [ 9%] changes reading sources... [ 18%] computing reading sources... [ 27%] datafiles reading sources... [ 36%] index reading sources... [ 45%] karabo_bridge/cpp-client reading sources... [ 54%] karabo_bridge/protocol reading sources... [ 63%] karabo_bridge/py-client reading sources... [ 72%] online reading sources... [ 81%] overview reading sources... [ 90%] resources reading sources... [100%] software looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 9%] changes writing output... [ 18%] computing writing output... [ 27%] datafiles writing output... [ 36%] index writing output... [ 45%] karabo_bridge/cpp-client writing output... [ 54%] karabo_bridge/protocol writing output... [ 63%] karabo_bridge/py-client writing output... [ 72%] online writing output... [ 81%] overview writing output... [ 90%] resources writing output... [100%] software generating indices... genindex py-modindex writing additional pages... search copying images... [ 33%] _images/data_flow_cal.jpeg copying images... [ 66%] _images/lpd2tile_gui.png copying images... [100%] _images/h5.png copying static files... WARNING: html_static_path entry '/rtd_root/readthedocs/templates/sphinx/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 1 warning. Copying readthedocs-dynamic-include.js_t... done Copying readthedocs-data.js_t... done Copying searchtools.js_t... done [rtd-command-info] start-time: 2018-06-20T12:57:48.136000Z, end-time: 2018-06-20T12:57:51.770000Z, duration: 3, exit-code: 0 python /user_builds/data-analysis-user-documentation/envs/latest/bin/sphinx-build -T -b json -d _build/doctrees-json -D language=en . _build/json Running Sphinx v1.3.5 making output directory... loading translations [en]... done loading pickled environment... failed: build environment version not current loading intersphinx inventory from https://docs.python.org/objects.inv... building [mo]: targets for 0 po files that are out of date building [json]: targets for 11 source files that are out of date updating environment: 11 added, 0 changed, 0 removed reading sources... [ 9%] changes reading sources... [ 18%] computing reading sources... [ 27%] datafiles reading sources... [ 36%] index reading sources... 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[ 66%] _images/data_flow_cal.jpeg copying images... [100%] _images/lpd2tile_gui.png copying static files... WARNING: html_static_path entry '/rtd_root/readthedocs/templates/sphinx/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 1 warning. [rtd-command-info] start-time: 2018-06-20T12:57:52.941000Z, end-time: 2018-06-20T12:57:56.064000Z, duration: 3, exit-code: 0 python /user_builds/data-analysis-user-documentation/envs/latest/bin/sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia Running Sphinx v1.3.5 making output directory... loading translations [en]... done loading pickled environment... failed: build environment version not current loading intersphinx inventory from https://docs.python.org/objects.inv... building [mo]: targets for 0 po files that are out of date building [readthedocssinglehtmllocalmedia]: all documents updating environment: 11 added, 0 changed, 0 removed reading sources... [ 9%] changes reading sources... [ 18%] computing reading sources... [ 27%] datafiles reading sources... [ 36%] index reading sources... [ 45%] karabo_bridge/cpp-client reading sources... [ 54%] karabo_bridge/protocol reading sources... 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[rtd-command-info] start-time: 2018-06-20T12:57:57.195000Z, end-time: 2018-06-20T12:58:00.210000Z, duration: 3, exit-code: 0 python /user_builds/data-analysis-user-documentation/envs/latest/bin/sphinx-build -b latex -D language=en -d _build/doctrees . _build/latex Running Sphinx v1.3.5 making output directory... loading translations [en]... done loading pickled environment... failed: build environment version not current loading intersphinx inventory from https://docs.python.org/objects.inv... building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 11 added, 0 changed, 0 removed reading sources... [ 9%] changes reading sources... [ 18%] computing reading sources... [ 27%] datafiles reading sources... [ 36%] index reading sources... [ 45%] karabo_bridge/cpp-client reading sources... [ 54%] karabo_bridge/protocol reading sources... [ 63%] karabo_bridge/py-client reading sources... [ 72%] online reading sources... [ 81%] overview reading sources... [ 90%] resources reading sources... [100%] software looking for now-outdated files... none found pickling environment... done checking consistency... done processing Userdocumentation.tex... index overview online karabo_bridge/py-client karabo_bridge/cpp-client karabo_bridge/protocol datafiles computing software resources changes resolving references... writing... done copying images... _images/h5.png _images/lpd2tile_gui.png _images/data_flow_cal.jpeg copying TeX support files... done build succeeded. [rtd-command-info] start-time: 2018-06-20T12:58:00.278000Z, end-time: 2018-06-20T12:58:01.970000Z, duration: 1, exit-code: 0 pdflatex -interaction=nonstopmode /user_builds/data-analysis-user-documentation/checkouts/latest/source/_build/latex/Userdocumentation.tex This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (/user_builds/data-analysis-user-documentation/checkouts/latest/source/_build/l atex/Userdocumentation.tex LaTeX2e <2014/05/01> Babel <3.9l> and hyphenation patterns for 2 languages loaded. 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[19] Underfull \hbox (badness 10000) in paragraph at lines 1299--1302 \T1/ptm/m/n/10 Desy pro-vides a set of ap-pli-ca-tions on the Maxwell clus-ter. The list is avail-able here: [20] [21] LaTeX Warning: Hyper reference `computing:queue' on page 22 undefined on input line 1506. Underfull \hbox (badness 6016) in paragraph at lines 1528--1530 []\T1/ptm/m/n/10 Then open a browser win-dow on your ma-chine \T1/pcr/m/n/10 CO MP \T1/ptm/m/n/10 and ask it to con-nect to port 8432 [22] LaTeX Warning: Hyper reference `computing:from-outside-the-desy-network' on pag e 23 undefined on input line 1584. [23] [24] Chapter 5. LaTeX Warning: Hyper reference `computing:offline-cluster' on page 25 undefined on input line 1658. LaTeX Warning: Hyper reference `computing:online-cluster' on page 25 undefined on input line 1658. [25] [26] Chapter 6. Underfull \hbox (badness 10000) in paragraph at lines 1701--1704 []\T1/ptm/m/n/10 We ad-vise fu-ture users to get knowl-edge about the \T1/ptm/m /it/10 Sci-en-tific Data Pol-icy of Eu-ro-pean XFEL\T1/ptm/m/n/10 : [27] [28] Chapter 7. [29] [30] Underfull \hbox (badness 10000) in paragraph at lines 1765--1769 []\T1/ptm/m/n/10 Kuster, Markus, et al. ``De-tec-tors and cal-i-bra-tion con-ce pt for the Eu- Underfull \hbox (badness 10000) in paragraph at lines 1765--1769 \T1/ptm/m/n/10 ro-pean XFEL.'' Syn-chrotron ra-di-a-tion news 27.4 (2014): 35-3 8. Avail-able on-line: [31] [32] LaTeX Warning: Reference `karabo_bridge/py-client:module-karabo_bridge' on page 33 undefined on input line 1776. [33] No file Userdocumentation.ind. (./Userdocumentation.aux) Package rerunfilecheck Warning: File `Userdocumentation.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on Userdocumentation.pdf (37 pages, 829164 bytes). Transcript written on Userdocumentation.log. [rtd-command-info] start-time: 2018-06-20T12:58:02.040000Z, end-time: 2018-06-20T12:58:02.087000Z, duration: 0, exit-code: 0 makeindex -s python.ist Userdocumentation.idx This is makeindex, version 2.15 [TeX Live 2015/dev] (kpathsea + Thai support). Scanning style file ./python.ist......done (6 attributes redefined, 0 ignored). Scanning input file Userdocumentation.idx....done (3 entries accepted, 0 rejected). Sorting entries....done (4 comparisons). Generating output file Userdocumentation.ind....done (15 lines written, 0 warnings). Output written in Userdocumentation.ind. Transcript written in Userdocumentation.ilg. [rtd-command-info] start-time: 2018-06-20T12:58:02.145000Z, end-time: 2018-06-20T12:58:03.137000Z, duration: 0, exit-code: 0 pdflatex -interaction=nonstopmode /user_builds/data-analysis-user-documentation/checkouts/latest/source/_build/latex/Userdocumentation.tex This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2015/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (/user_builds/data-analysis-user-documentation/checkouts/latest/source/_build/l atex/Userdocumentation.tex LaTeX2e <2014/05/01> Babel <3.9l> and hyphenation patterns for 2 languages loaded. 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[1] [2] Underfull \hbox (badness 10000) in paragraph at lines 137--139 []\T1/ptm/m/n/10 The doc-u-men-ta-tion is avail-able on-line at [][]https://in. xfel.eu/readthedocs/docs/data-analysis-user- [1] [2] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [3] [4 <./data_flow_cal.jpeg>] [5] [6] Chapter 2. [7 <./lpd2tile_gui.png>] [8] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [9] [10] [11] [12] Chapter 3. LaTeX Warning: Float too large for page by 3.28264pt on input line 753. [13] [14 <./h5.png>] Overfull \hbox (38.91792pt too wide) in paragraph at lines 789--853 [][] [15] [16] Chapter 4. [17] [18] Overfull \hbox (159.38287pt too wide) in paragraph at lines 1201--1206 []\T1/ptm/m/n/10 To share files be-tween the on-line and the of-fline clus-ter, the \T1/pcr/m/n/10 /gpfs/exfel/exp///p/usr [19] Underfull \hbox (badness 10000) in paragraph at lines 1299--1302 \T1/ptm/m/n/10 Desy pro-vides a set of ap-pli-ca-tions on the Maxwell clus-ter. The list is avail-able here: [20] [21] Underfull \hbox (badness 6016) in paragraph at lines 1528--1530 []\T1/ptm/m/n/10 Then open a browser win-dow on your ma-chine \T1/pcr/m/n/10 CO MP \T1/ptm/m/n/10 and ask it to con-nect to port 8432 [22] [23] [24] Chapter 5. [25] [26] Chapter 6. Underfull \hbox (badness 10000) in paragraph at lines 1701--1704 []\T1/ptm/m/n/10 We ad-vise fu-ture users to get knowl-edge about the \T1/ptm/m /it/10 Sci-en-tific Data Pol-icy of Eu-ro-pean XFEL\T1/ptm/m/n/10 : [27] [28] Chapter 7. [29] [30] Underfull \hbox (badness 10000) in paragraph at lines 1765--1769 []\T1/ptm/m/n/10 Kuster, Markus, et al. ``De-tec-tors and cal-i-bra-tion con-ce pt for the Eu- Underfull \hbox (badness 10000) in paragraph at lines 1765--1769 \T1/ptm/m/n/10 ro-pean XFEL.'' Syn-chrotron ra-di-a-tion news 27.4 (2014): 35-3 8. Avail-able on-line: [31] [32] [33] (./Userdocumentation.ind [34] [35]) (./Userdocumentation.aux) Package rerunfilecheck Warning: File `Userdocumentation.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on Userdocumentation.pdf (39 pages, 836614 bytes). Transcript written on Userdocumentation.log. 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